transformer.pth is not accessible by md5sum and phamer.py is unable to find it

[PB-Shinde]

I downloaded the transformer.pth from google drive link provided, and extracted it in ./database/ folder. Then used md5sum command to check which showed the following error.

md5sum: transformer.pth: Is a directory
transformer.pth: FAILED open or read
md5sum: WARNING: 1 listed file could not be read

so I opened the folder it had folder named "/archive" and inside it had 1 folder named "/data" and 2 files named data.pkl, version.
so i went ahead with the phamer

(phn) drkksharma@drkksharma-OptiPlex-9020:~/phamer$ python PhaMer_preprocessing.py --contigs test_contigs.fa
Using parallelized prodigal...
Running prodigal...

---------------------------------Diamond BLASTp---------------------------------
Creating Diamond database and running Diamond...
Creating Diamond database...
Running Diamond...
(phn) drkksharma@drkksharma-OptiPlex-9020:~/phamer$ python PhaMer.py --out example_prediction.csv
running with cpu
cannot find pre-trained model

this is the error i received, and after much trial error i found that error was on the line number 100 of file PhaMer.py
more precisely with the loading the pretrained model.
My issue is, is there some issue with script or the transformer.pth. please clarify.

[KennthShang]

Hi，

I am sorry that this was caused by the issue with the google drive.

Please try to download the pre-trained model again with the updated guidelines

Or you can run the command below to download it:

gdown  --id 11QsvDJQwRBO-LWAXrA07N5WpxHcQJv8Y

Also, please make sure the file is located in the database folder.

Best,
Jiayu