diff --git a/R/genophenogram.R b/R/genophenogram.R index 511570a..a0d12e7 100644 --- a/R/genophenogram.R +++ b/R/genophenogram.R @@ -161,10 +161,10 @@ genophenogram <- function(wt.aa, pos, mut.aa, score, syn.med, stop.med, syn.top <- syn.med+(syn.med-stop.med) cm <- colmap( valStops=c(stop.med, neutral.bottom, neutral.top, syn.top), - colStops=c("royalblue3","white","white","firebrick3") + colStops=c("mediumorchid4","white","white","green4") ) cols <- cm(score) - # colRamp <- colorRampPalette(c("royalblue3","white","firebrick3"))(11) + # colRamp <- colorRampPalette(c("mediumorchid4","white","green4"))(11) # scoreToColIdx <- function(score) sapply(score,function(s) { # if (is.na(s)) { # NA @@ -435,11 +435,11 @@ genophenogram.nc <- function(wt.nc, pos, mut.nc, score, syn.med, stop.med, syn.top <- syn.med+(syn.med-stop.med) cm <- colmap( valStops=c(stop.med, neutral.bottom, neutral.top, syn.top), - colStops=c("royalblue3","white","white","firebrick3") + colStops=c("mediumorchid4","white","white","green4") ) cols <- cm(score) - # colRamp <- colorRampPalette(c("royalblue3","white","firebrick3"))(11) + # colRamp <- colorRampPalette(c("mediumorchid4","white","green4"))(11) # scoreToColIdx <- function(score) sapply(score,function(s) { # if (is.na(s)) { # NA