diff --git a/pyproject.toml b/pyproject.toml index f6d9382..3a61d0d 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -6,6 +6,7 @@ build-backend = "setuptools.build_meta" [project] name = "arroyoSAS" version = "0.1.0" +requires-python = ">=3.11,<3.12" description = "A package to perform computations and suggestions during a time-resolved GISAXS experiment." authors = [{ name = "Dylan McReynolds", email = "dmcreynolds@lbl.gov" }] dependencies = [ @@ -23,7 +24,7 @@ dependencies = [ "websockets", "zarr", "transformers", - "tiled[client]", + "tiled[all]", "redis"] [project.optional-dependencies] diff --git a/src/_test/test_tiled_websocket_bluesky.py b/src/_test/test_tiled_websocket_bluesky.py index 4509b0f..56c673c 100644 --- a/src/_test/test_tiled_websocket_bluesky.py +++ b/src/_test/test_tiled_websocket_bluesky.py @@ -8,6 +8,7 @@ import numpy as np import pytest +from arroyosas.schemas import RawFrameEvent, SASStart from arroyosas.tiled.tiled_websocket_bluesky import TiledClientListener, tiled_ws_listener_factory @@ -85,110 +86,141 @@ def test_log_message_to_json_no_current_dir(self, listener): # No file created, no error def test_on_new_run_creates_subscription(self, listener, mock_tiled_client): - data = {"key": "run_uid_123"} - with ( - patch("arroyosas.tiled.tiled_websocket_bluesky.Subscription") as mock_sub_cls, - patch.object(listener, "publish_start"), - ): - mock_sub = MagicMock() - mock_sub_cls.return_value = mock_sub - listener.on_new_run(MagicMock(), data) - - mock_sub_cls.assert_called_once() - mock_sub.add_callback.assert_called_once_with(listener.on_streams_namespace) - mock_sub.start.assert_called_once() + update = MagicMock() + update.key = "run_uid_123" + update.subscription = MagicMock() + update.model_dump.return_value = {"key": "run_uid_123"} + + run_node = MagicMock() + run_sub = MagicMock() + run_sub.child_created = MagicMock() + run_node.subscribe.return_value = run_sub + update.child.return_value = run_node + + with patch.object(listener, "publish_start") as mock_publish_start: + listener.on_new_run(update) + + run_node.subscribe.assert_called_once_with(start=0) + run_sub.child_created.add_callback.assert_called_once_with(listener.on_streams_namespace) + run_sub.start.assert_called_once() + mock_publish_start.assert_called_once_with(run_node, {"key": "run_uid_123"}) def test_on_new_run_calls_publish_start(self, listener): - data = {"key": "run_001"} - with ( - patch("arroyosas.tiled.tiled_websocket_bluesky.Subscription") as mock_sub_cls, - patch.object(listener, "publish_start") as mock_pub, - ): - mock_sub_cls.return_value = MagicMock() - listener.on_new_run(MagicMock(), data) - mock_pub.assert_called_once_with(data) + update = MagicMock() + update.key = "run_001" + update.subscription = MagicMock() + update.model_dump.return_value = {"key": "run_001"} + + run_node = MagicMock() + run_sub = MagicMock() + run_sub.child_created = MagicMock() + run_node.subscribe.return_value = run_sub + update.child.return_value = run_node + + with patch.object(listener, "publish_start") as mock_pub: + listener.on_new_run(update) + + mock_pub.assert_called_once_with(run_node, {"key": "run_001"}) def test_on_streams_namespace(self, listener, mock_tiled_client): - sub = MagicMock() - sub.segments = ["run_uid_123"] - with patch("arroyosas.tiled.tiled_websocket_bluesky.Subscription") as mock_sub_cls: - mock_sub = MagicMock() - mock_sub_cls.return_value = mock_sub - listener.on_streams_namespace(sub, {"key": "streams"}) - mock_sub.add_callback.assert_called_once_with(listener.on_new_stream) + update = MagicMock() + update.key = "streams" + update.subscription = MagicMock() + update.model_dump.return_value = {"key": "streams"} + + streams_node = MagicMock() + streams_sub = MagicMock() + streams_sub.child_created = MagicMock() + streams_node.subscribe.return_value = streams_sub + update.child.return_value = streams_node + + listener.on_streams_namespace(update) + + streams_node.subscribe.assert_called_once_with(start=0) + streams_sub.child_created.add_callback.assert_called_once_with(listener.on_new_stream) def test_on_new_stream(self, listener): - sub = MagicMock() - sub.segments = ["run_uid", "streams"] - with patch("arroyosas.tiled.tiled_websocket_bluesky.Subscription") as mock_sub_cls: - mock_sub = MagicMock() - mock_sub_cls.return_value = mock_sub - listener.on_new_stream(sub, {"key": "primary"}) - mock_sub.add_callback.assert_called_once_with(listener.on_node_in_stream) + update = MagicMock() + update.key = "primary" + update.subscription = MagicMock() + update.model_dump.return_value = {"key": "primary"} + + stream_node = MagicMock() + stream_sub = MagicMock() + stream_sub.child_created = MagicMock() + stream_node.subscribe.return_value = stream_sub + update.child.return_value = stream_node + + listener.on_new_stream(update) + + stream_node.subscribe.assert_called_once_with(start=0) + stream_sub.child_created.add_callback.assert_called_once_with(listener.on_node_in_stream) def test_on_node_in_stream_matching_target(self, listener): - sub = MagicMock() - sub.segments = ["run_uid", "streams", "primary"] - data = {"key": "img", "sequence": 0} - - with ( - patch("arroyosas.tiled.tiled_websocket_bluesky.Subscription") as mock_sub_cls, - patch.object(listener, "publish_event") as mock_pub, - ): - mock_sub = MagicMock() - mock_sub_cls.return_value = mock_sub - listener.on_node_in_stream(sub, data) - mock_pub.assert_called_once_with(sub, data) # ← was publish_event(data) + update = MagicMock() + update.key = "img" + update.subscription = MagicMock() + update.model_dump.return_value = {"key": "img", "sequence": 0} + + data_node = MagicMock() + data_sub = MagicMock() + data_sub.new_data = MagicMock() + data_node.subscribe.return_value = data_sub + update.child.return_value = data_node + + listener.on_node_in_stream(update) + + data_node.subscribe.assert_called_once_with(start=0) + data_sub.new_data.add_callback.assert_called_once_with(listener.on_event) + data_sub.start.assert_called_once() def test_on_node_in_stream_non_matching_target(self, listener): - sub = MagicMock() - sub.segments = ["run_uid", "streams", "primary"] - data = {"key": "other_key", "sequence": 0} + update = MagicMock() + update.key = "other_key" + update.subscription = MagicMock() + update.model_dump.return_value = {"key": "other_key", "sequence": 0} + + listener.on_node_in_stream(update) - with ( - patch("arroyosas.tiled.tiled_websocket_bluesky.Subscription"), - patch.object(listener, "publish_event") as mock_pub, - ): - listener.on_node_in_stream(sub, data) - mock_pub.assert_not_called() + update.child.assert_not_called() def test_on_event(self, listener): - sub = MagicMock() - data = {"key": "event_1", "sequence": 5} + update = MagicMock() + update.subscription = MagicMock() + update.model_dump.return_value = {"sequence": 5} listener.create_run_folder("run_on_event") - listener.on_event(sub, data) + with patch.object(listener, "publish_event") as mock_publish_event: + listener.on_event(update) + # With create_run_logs=True, should log to JSON log_files = list(Path(listener.current_run_dir).glob("on_event_*.json")) assert len(log_files) == 1 + mock_publish_event.assert_called_once_with(update) def test_publish_start(self, listener): - # publish_start calls SASStart(data=data) which fails validation (missing fields) - # The exception propagates from send_to_operator -> asyncio.run data = {"key": "run_001"} - with patch.object(listener, "send_to_operator"): - # The actual call will raise ValidationError; just verify send_to_operator is called - # (it's called even if message construction fails inside send_to_operator) - try: - listener.publish_start(data) - except Exception: - pass - # send_to_operator is called with whatever SASStart produces (or raises) - # The important thing is publish_start calls send_to_operator - - def test_publish_event(self, listener, mock_tiled_client): # ← add mock_tiled_client - sub = MagicMock() - sub.segments = ["run_uid", "streams", "primary"] - data = {"key": "img", "sequence": 7} - - data_node = MagicMock() - data_node.__getitem__ = MagicMock(return_value=np.zeros((5, 5))) - mock_tiled_client.__getitem__ = MagicMock(return_value=data_node) + run_node = MagicMock() + run_node.metadata = {"run_name": "Run 1", "width": 5, "height": 7, "data_type": "uint16"} with patch.object(listener, "send_to_operator") as mock_send: - listener.publish_event(sub, data) # ← pass sub + listener.publish_start(run_node, data) mock_send.assert_called_once() - from arroyosas.schemas import RawFrameEvent + msg = mock_send.call_args[0][0] + assert isinstance(msg, SASStart) + assert msg.run_id == "run_001" + assert msg.run_name == "Run 1" + assert msg.width == 5 + assert msg.height == 7 + assert msg.data_type == "uint16" + + def test_publish_event(self, listener): + update = MagicMock() + update.data.return_value = np.zeros((5, 5)) + update.sequence = 7 + with patch.object(listener, "send_to_operator") as mock_send: + listener.publish_event(update) + mock_send.assert_called_once() msg = mock_send.call_args[0][0] assert isinstance(msg, RawFrameEvent) assert msg.frame_number == 7 diff --git a/src/arroyosas/tiled/tiled_websocket_bluesky.py b/src/arroyosas/tiled/tiled_websocket_bluesky.py index dc8014e..c800434 100644 --- a/src/arroyosas/tiled/tiled_websocket_bluesky.py +++ b/src/arroyosas/tiled/tiled_websocket_bluesky.py @@ -4,13 +4,13 @@ import os import time from collections import defaultdict -from typing import Any, Dict +from typing import Any, Dict, TypeAlias # import numpy as np from arroyopy.listener import Listener from tiled.client import from_uri from tiled.client.base import BaseClient -from tiled.client.stream import Subscription +from tiled.client.stream import LiveArrayData, LiveArrayRef, LiveChildCreated from arroyosas.schemas import ( # SASStop,; SerializableNumpyArrayModel, RawFrameEvent, @@ -21,6 +21,9 @@ logger = logging.getLogger(__name__) +ChildCreatedEvent: TypeAlias = LiveChildCreated +FrameDataEvent: TypeAlias = LiveArrayData | LiveArrayRef + class TiledClientListener(Listener): """ @@ -35,12 +38,14 @@ def __init__( self, tiled_client: BaseClient, stream_name: str, + raw_data_path: str = None, target: str = "img", create_run_logs: bool = True, log_dir: str = "tiled_logs", ): self.tiled_client = tiled_client self.stream_name = stream_name + self.raw_data_path = raw_data_path self.target = target self.create_run_logs = create_run_logs if not os.path.exists(log_dir): @@ -49,70 +54,79 @@ def __init__( self.current_run_dir = None self.event_counters = defaultdict(int) # Track sequence numbers for each event type - def on_new_run(self, sub: Subscription, data: Dict[str, Any]): + def on_new_run(self, event: ChildCreatedEvent) -> None: """ Handle new run events by creating a subscription for the run. """ - uid = data["key"] + uid = event.key logger.debug(f"New run {uid}") if logger.isEnabledFor(logging.DEBUG) else None # Create new folder for this run if self.create_run_logs: self.create_run_folder(uid) - self.log_message_to_json("on_new_run", sub, data) + self.log_message_to_json("on_new_run", event.subscription, event.model_dump()) # Subscribe to the run - run_sub = Subscription(self.tiled_client.context, [uid], start=0) - run_sub.add_callback(self.on_streams_namespace) + run_node = event.child() + run_sub = run_node.subscribe(start=0) + run_sub.child_created.add_callback(self.on_streams_namespace) run_sub.start() # Publish start event - self.publish_start(data) + self.publish_start(run_node, {"key": uid}) - def on_streams_namespace(self, sub, data): + def on_streams_namespace(self, event: ChildCreatedEvent) -> None: """ Handle new streams namespace events by subscribing to the 'streams' segment. For example, this might be the creation of 'baseline' or 'primary' streams. """ - logger.debug(data) if logger.isEnabledFor(logging.DEBUG) else None + logger.debug(event) if logger.isEnabledFor(logging.DEBUG) else None + + if event.key != "streams": + return # Log the event if self.create_run_logs: - self.log_message_to_json("on_streams_namespace", sub, data) + self.log_message_to_json("on_streams_namespace", event.subscription, event.model_dump()) - streams_sub = Subscription(self.tiled_client.context, sub.segments + ["streams"], start=0) - streams_sub.add_callback(self.on_new_stream) + streams_sub = event.child().subscribe(start=0) + streams_sub.child_created.add_callback(self.on_new_stream) streams_sub.start() - def on_new_stream(self, sub, data): + def on_new_stream(self, event: ChildCreatedEvent) -> None: """ Handle new stream """ - logger.debug(data) if logger.isEnabledFor(logging.DEBUG) else None - stream_name = data["key"] + logger.debug(event) if logger.isEnabledFor(logging.DEBUG) else None + stream_name = event.key (logger.info(f"new stream {stream_name}") if logger.isEnabledFor(logging.INFO) else None) + if stream_name != self.stream_name: + return + if self.create_run_logs: - self.log_message_to_json("on_new_stream", sub, data) + self.log_message_to_json("on_new_stream", event.subscription, event.model_dump()) - stream_sub = Subscription(self.tiled_client.context, sub.segments + [stream_name], start=0) - stream_sub.add_callback(self.on_node_in_stream) + stream_sub = event.child().subscribe(start=0) + stream_sub.child_created.add_callback(self.on_node_in_stream) stream_sub.start() - def on_event(self, sub: Subscription, data: Dict[str, Any]) -> None: + def on_event(self, event: FrameDataEvent) -> None: """ Handle new event """ - logger.info(data) if logger.isEnabledFor(logging.INFO) else None + logger.info(event) if logger.isEnabledFor(logging.INFO) else None if self.create_run_logs: - self.log_message_to_json("on_event", sub, data) + self.log_message_to_json("on_event", event.subscription, event.model_dump()) + + self.publish_event(event) - def on_node_in_stream(self, sub, data): - logger.debug(data) if logger.isEnabledFor(logging.DEBUG) else None - key = data["key"] + def on_node_in_stream(self, event: ChildCreatedEvent) -> None: + logger.debug(event) if logger.isEnabledFor(logging.DEBUG) else None + key = event.key if self.create_run_logs: - self.log_message_to_json("on_node_in_stream", sub, data) + self.log_message_to_json("on_node_in_stream", event.subscription, event.model_dump()) # Log what we're comparing for debugging (logger.info(f"Checking key '{key}' against target '{self.target}'") if logger.isEnabledFor(logging.INFO) else None) @@ -127,11 +141,9 @@ def on_node_in_stream(self, sub, data): (logger.info(f"Key '{key}' matches target '{self.target}', proceeding") if logger.isEnabledFor(logging.INFO) else None) - stream_sub = Subscription(self.tiled_client.context, sub.segments + [key], start=0) - # stream_sub.add_callback(print) - stream_sub.add_callback(self.on_event) + stream_sub = event.child().subscribe(start=0) + stream_sub.new_data.add_callback(self.on_event) stream_sub.start() - self.publish_event(sub, data) # ← pass sub async def start(self) -> None: """Start the listener by calling _start method.""" @@ -141,10 +153,9 @@ async def start(self) -> None: def _start(self) -> None: """Subscribe to the socket at the provided base segments level""" - node = self.tiled_client - catalog_sub = Subscription(node.context) - catalog_sub.add_callback(self.on_new_run) - # catalog_sub.add_callback(self.test) + node = self.tiled_client[self.raw_data_path] + catalog_sub = node.subscribe() + catalog_sub.child_created.add_callback(self.on_new_run) catalog_sub.start() print("I'm running") @@ -156,23 +167,29 @@ async def stop(self) -> None: def send_to_operator(self, message: SASMessage) -> None: asyncio.run(self.publish(message)) - def publish_start(self, data: Dict[str, Any]) -> None: + def publish_start(self, run_node: BaseClient, data: Dict[str, Any]) -> None: + metadata = getattr(run_node, "metadata", {}) or {} + base_url = getattr(self.tiled_client.context, "base_url", "") start = SASStart( - data=data, # Include any relevant data for the start event + run_id=data["key"], + run_name=metadata.get("run_name", data["key"]), + width=metadata.get("width", 0), + height=metadata.get("height", 0), + data_type=metadata.get("data_type", ""), + tiled_url=str(base_url), ) self.send_to_operator(start) - def publish_event(self, sub: Subscription, data: Dict[str, Any]) -> None: # ← add sub + def publish_event(self, event: FrameDataEvent) -> None: """ Publish an event to the operator. """ - data_node = self.tiled_client["/".join(sub.segments + [data["key"]])] # ← read from tiled - event = RawFrameEvent( - image=SerializableNumpyArrayModel(array=data_node[:]), # ← was None - frame_number=data.get("sequence", 0), + message = RawFrameEvent( + image=SerializableNumpyArrayModel(array=event.data()), + frame_number=event.sequence, tiled_url="", # Placeholder for actual URL if needed ) - self.send_to_operator(event) + self.send_to_operator(message) def print_event(self, event_name: str, data: Dict[str, Any]) -> None: """Print event information - placeholder method""" @@ -221,12 +238,25 @@ def tiled_ws_listener_factory( uri: str, stream_name: str, operator=None, + raw_data_path: str = None, target: str = "img", create_run_logs: bool = True, log_dir: str = "tiled_logs", api_key: str = None, ) -> TiledClientListener: if api_key is None: - api_key = os.environ.get("TILED_LIVE_API_KEY") + api_key = os.environ.get("TILED_LIVE_API_KEY") or os.environ.get("TILED_API_KEY") client = from_uri(uri, api_key=api_key) - return TiledClientListener(client, stream_name, target, create_run_logs, log_dir) + return TiledClientListener( + tiled_client=client, + stream_name=stream_name, + raw_data_path=raw_data_path, + target=target, + create_run_logs=create_run_logs, + log_dir=log_dir, + ) + + +if __name__ == "__main__": + listener = tiled_ws_listener_factory("https://tiled.nsls2.bnl.gov", "primary", raw_data_path="smi/migration") + asyncio.run(listener.start()) diff --git a/src/arroyosas/tiled/tiled_ws_test.py b/src/arroyosas/tiled/tiled_ws_test.py new file mode 100644 index 0000000..b5a5c55 --- /dev/null +++ b/src/arroyosas/tiled/tiled_ws_test.py @@ -0,0 +1,28 @@ +import sys + +from tiled.client import from_uri +from tiled.client.stream import LiveChildCreated + + +def on_child_created(event: LiveChildCreated) -> None: + print(f"child_created key={event.key} seq={event.sequence}") + + +def main() -> None: + uri = sys.argv[1] if len(sys.argv) > 1 else 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