diff --git a/docs/assets/infographic.svg b/docs/assets/infographic.svg new file mode 100644 index 0000000..fb3e5bd --- /dev/null +++ b/docs/assets/infographic.svg @@ -0,0 +1,100 @@ + + + + + + + Research Data & Workflow Journey + From study intake to analysis output with governed access + + + + + + + + + INTAKE + Study Files + & Metadata + + + + GOVERN + Access & + Policy + + + + ORGANIZE + Projects & + Teams + + + + EXECUTE + Reproducible + Workflows + + + + ANALYZE + Outputs & + Audit Trails + + + + + + + + + + + + + + + + + + + + + + TOOLS + + + git-drs + + + syfon + + + funnel + + + forge + + + grip + + + sifter + + + data-client + + + + Data Flow + + Researcher Flow + + + + + diff --git a/docs/index.md b/docs/index.md index 40513f1..97acd13 100644 --- a/docs/index.md +++ b/docs/index.md @@ -4,7 +4,7 @@ body_class: home business-home hide: - navigation - toc -lead: "CALYPR gives academic and biomedical research programs a governed operating layer for data access, reproducible compute, metadata integration, and model-ready assets." +lead: "CALYPR is a research data management platform for translational teams." personas: - data-steward - platform-engineer @@ -29,10 +29,10 @@ related_tools:
-

Governed research operations

-

Run biomedical research programs with policy, provenance, and speed.

+

For translational researchers

+

Explore data, manage projects, and run reproducible workflows in one platform.

- CALYPR helps academic and translational teams govern sensitive data access, run reproducible workflows, connect metadata, and package model-ready assets across cloud, on-prem, and federated environments. + CALYPR helps translational teams move from study intake to analysis output with governed data access, project-level controls, and execution history you can audit.

Explore products @@ -40,89 +40,63 @@ related_tools: Match a use case
-
-

Why teams choose CALYPR

- +
+ CALYPR research data and workflow journey — from study intake to analysis output
-
-

Proof points

-

Built on standards your bioinformatics and platform teams can verify.

-
-
-

Open standards foundation

-

Data access on GA4GH DRS, execution through GA4GH TES, and metadata structures aligned to FHIR-oriented research workflows.

-
-
-

Research-ready governance

-

Policy boundaries, controlled transfer paths, and durable provenance designed for institutional review, audits, and multi-team collaboration.

-
-
-

Practical adoption path

-

Start with one operating failure—data intake, compute reproducibility, metadata quality, or model handoff—and expand without replacing every workflow at once.

+
+

Task walkthroughs

+

Common research tasks, demonstrated with synthetic projects.

+
+
+

Explore and organize research data

+

TRX-101 Lung Response Cohort

+

Browse study files and metadata, then filter assets by cohort and assay type before analysis kickoff.

+ Research project view for data exploration and project management
-
-
- -
-

Choose your starting point

-

Different stakeholders can evaluate CALYPR from their own decision lens.

-
-

Program leaders and PIs

-

Show funding boards and collaborators a governed operating model that improves delivery confidence without slowing scientific teams.

- +

Manage project collaborators and access

+

TRX-204 AML Multi-site Registry

+

Review project member context and enforce role-based access before exposing new datasets to partner labs.

+ Project profile and member management view
-

Bioinformatics and workflow teams

-

Keep analyses reproducible across environments while preserving lineage from source data through workflow outputs and model artifacts.

- +

Integrate new data drops

+

TRX-318 Immunotherapy Biomarker Study

+

Upload files from collaborating sites and register each drop with provenance and project metadata.

+ File upload workflow for governed data integration
-

Platform, data, and compliance teams

-

Implement policy-aware data operations, validated metadata, and controlled transfer services with standards-based interoperability.

- +

Execute workflows and retrieve outputs

+

TRX-101 Lung Response Cohort

+

Run a reproducible workflow, monitor status, and download artifacts for reporting and downstream modeling.

+ Workflow output download view for execution results
-