From c1d5c6e75955f1b734976c61b548d52563e7fc82 Mon Sep 17 00:00:00 2001 From: David Landa Marban Date: Mon, 17 Aug 2026 13:30:50 +0200 Subject: [PATCH] Improving the cli parsing --- docs/pycopm.core.pycopm.html | 6 +-- docs/pycopm.utils.coarsening.html | 2 +- docs/pycopm.utils.generate_decks.html | 2 +- docs/pycopm.utils.input_values.html | 2 +- docs/pycopm.utils.refinement.html | 2 +- docs/searchindex.js | 2 +- src/pycopm/core/pycopm.py | 75 +++++++++++++-------------- src/pycopm/utils/coarsening.py | 13 +++-- src/pycopm/utils/generate_decks.py | 3 +- src/pycopm/utils/input_values.py | 67 ++++++++++++------------ src/pycopm/utils/refinement.py | 13 +++-- tests/scripts/docs_check_outputs.sh | 56 ++++++++++---------- tests/test_8_dual.py | 1 - 13 files changed, 123 insertions(+), 121 deletions(-) diff --git a/docs/pycopm.core.pycopm.html b/docs/pycopm.core.pycopm.html index 836ba88..60a532e 100644 --- a/docs/pycopm.core.pycopm.html +++ b/docs/pycopm.core.pycopm.html @@ -99,7 +99,7 @@ file-generation details are implemented in the utility modules.

-pycopm.core.pycopm._check_cmdargs(cmdargs: dict[str, str]) → None
+pycopm.core.pycopm._check_cmdargs(cmdargs: Namespace) → None

Validate command-line arguments and incompatible operations.

The checks cover input type, Flow availability, coarsening and refinement syntax, aggregation methods, vicinity selections, transformations, and @@ -140,7 +140,7 @@

-pycopm.core.pycopm._parse_arguments(argv: Sequence[str] | None = None) → dict[str, str]
+pycopm.core.pycopm._parse_arguments(argv: list[str] | None = None) → Namespace

Parse supported command-line arguments.

Unknown arguments are left unprocessed for compatibility with external launchers.

@@ -159,7 +159,7 @@
-pycopm.core.pycopm.main(argv: Sequence[str] | None = None) → None
+pycopm.core.pycopm.main(argv: list[str] | None = None) → None

Run the deck-based or TOML-based pycopm workflow.

OPM .DATA decks can be coarsened, refined, transformed, or reduced to a submodel. TOML configurations generate coarsened Norne or Drogon cases diff --git a/docs/pycopm.utils.coarsening.html b/docs/pycopm.utils.coarsening.html index 28d8be0..0eaa530 100644 --- a/docs/pycopm.utils.coarsening.html +++ b/docs/pycopm.utils.coarsening.html @@ -426,7 +426,7 @@

-pycopm.utils.coarsening.create_coarsening_maps(dck: ConfigViaDeck, cmdargs) → CoarseningMaps
+pycopm.utils.coarsening.create_coarsening_maps(dck: ConfigViaDeck, cmdargs: Namespace) → CoarseningMaps

Create axis mappings and assign original cells to coarse cells.

Parameters:
diff --git a/docs/pycopm.utils.generate_decks.html b/docs/pycopm.utils.generate_decks.html index 0c1a0ca..d89b903 100644 --- a/docs/pycopm.utils.generate_decks.html +++ b/docs/pycopm.utils.generate_decks.html @@ -136,7 +136,7 @@
-pycopm.utils.generate_decks.create_deck(dck: ConfigViaDeck, cmdargs) → None
+pycopm.utils.generate_decks.create_deck(dck: ConfigViaDeck, cmdargs: Namespace) → None

Generate a modified OPM deck and its include files.

The selected workflow can preprocess the input deck, coarsen or refine the grid, extract a vicinity submodel, transform coordinates, and optionally run diff --git a/docs/pycopm.utils.input_values.html b/docs/pycopm.utils.input_values.html index 7fc6995..2725597 100644 --- a/docs/pycopm.utils.input_values.html +++ b/docs/pycopm.utils.input_values.html @@ -89,7 +89,7 @@

Create configuration objects from command-line arguments and TOML files.

-pycopm.utils.input_values.create_deck_config(cmdargs: dict[str, str]) → ConfigViaDeck
+pycopm.utils.input_values.create_deck_config(cmdargs: Namespace) → ConfigViaDeck

Create a deck configuration from parsed command arguments.

Parameters:
diff --git a/docs/pycopm.utils.refinement.html b/docs/pycopm.utils.refinement.html index 830b9b5..dca11e1 100644 --- a/docs/pycopm.utils.refinement.html +++ b/docs/pycopm.utils.refinement.html @@ -138,7 +138,7 @@
-pycopm.utils.refinement.create_refinement_maps(dck: ConfigViaDeck, cmdargs) → RefinementMaps
+pycopm.utils.refinement.create_refinement_maps(dck: ConfigViaDeck, cmdargs: Namespace) → RefinementMaps

Create axis refinement maps and update output dimensions.

A refinement value of n divides an original interval into n + 1 intervals.

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\ No newline at end of file diff --git a/src/pycopm/core/pycopm.py b/src/pycopm/core/pycopm.py index cb0aa19..45ce19c 100644 --- a/src/pycopm/core/pycopm.py +++ b/src/pycopm/core/pycopm.py @@ -22,7 +22,6 @@ import shutil import subprocess import time -from collections.abc import Sequence from pathlib import Path from pycopm.utils.coarsening import coarsen_and_write_properties, create_coarsening_map @@ -32,7 +31,7 @@ from pycopm.utils.runs_executer import generate_postprocessing_plots, run_simulations -def main(argv: Sequence[str] | None = None) -> None: +def main(argv: list[str] | None = None) -> None: """Run the deck-based or TOML-based pycopm workflow. OPM ``.DATA`` decks can be coarsened, refined, transformed, or reduced to @@ -125,8 +124,8 @@ def main(argv: Sequence[str] | None = None) -> None: start_time = time.monotonic() cmdargs = _parse_arguments(argv) _check_cmdargs(cmdargs) - output_folder = Path(cmdargs["output_directory"]).expanduser().resolve() - input_file = cmdargs["input_deck_path"] + output_folder = Path(cmdargs.output_directory).expanduser().resolve() + input_file = cmdargs.input_deck_path output_folder.mkdir(parents=True, exist_ok=True) # Process a DATA deck by coarsening, refining, extracting, or transforming it @@ -143,11 +142,9 @@ def main(argv: Sequence[str] | None = None) -> None: input_file, str(output_folder), resource_directory, - int(cmdargs["significant_digits"]), - ) - cfg.flow_command = _check_flow( - cmdargs["flow_command"], cfg.flow_command, input_file + int(cmdargs.significant_digits), ) + cfg.flow_command = _check_flow(cmdargs.flow_command, cfg.flow_command, input_file) print(f"\npycopm is generating the input files for {cfg.model_name}, please wait.") for folder in ["preprocessing", "parameters", "jobs", "observations"]: @@ -182,7 +179,7 @@ def main(argv: Sequence[str] | None = None) -> None: generate_postprocessing_plots(cfg, time.monotonic() - start_time, number_tables) -def _parse_arguments(argv: Sequence[str] | None = None) -> dict[str, str]: +def _parse_arguments(argv: list[str] | None = None) -> argparse.Namespace: """Parse supported command-line arguments. Unknown arguments are left unprocessed for compatibility with external @@ -429,10 +426,10 @@ def _parse_arguments(argv: Sequence[str] | None = None) -> dict[str, str]: help="Set the number of significant digits used when writing floating-point values, or 0 " "to use machine precision", ) - return vars(parser.parse_known_args(argv)[0]) + return parser.parse_args(argv) -def _check_cmdargs(cmdargs: dict[str, str]) -> None: +def _check_cmdargs(cmdargs: argparse.Namespace) -> None: """Validate command-line arguments and incompatible operations. The checks cover input type, Flow availability, coarsening and refinement @@ -448,7 +445,7 @@ def _check_cmdargs(cmdargs: dict[str, str]) -> None: ------ SystemExit If an argument is invalid or an incompatible combination is requested.""" - input_file = cmdargs["input_deck_path"] + input_file = cmdargs.input_deck_path # Select the workflow from the input filename extension if not input_file.endswith((".DATA", ".toml")): print( @@ -456,7 +453,7 @@ def _check_cmdargs(cmdargs: dict[str, str]) -> None: "valid extensions are .DATA or .toml\n" ) raise SystemExit(1) - if not cmdargs["output_directory"]: + if not cmdargs.output_directory: print("\nInvalid value for '-o', the output folder cannot be empty.\n") raise SystemExit(1) # Only -i, -o, -f, and -precision apply to TOML configuration files @@ -491,7 +488,7 @@ def _check_cmdargs(cmdargs: dict[str, str]) -> None: invalid_options = [ option for option, (name, default) in data_options.items() - if cmdargs[name] != default + if getattr(cmdargs, name) != default ] if invalid_options: print( @@ -503,11 +500,11 @@ def _check_cmdargs(cmdargs: dict[str, str]) -> None: return # Verify the complete Flow command, including any launcher and arguments try: - flow_arguments = shlex.split(cmdargs["flow_command"]) + flow_arguments = shlex.split(cmdargs.flow_command) except ValueError: flow_arguments = [] if not flow_arguments: - print(f"\nInvalid OPM flow command '-f {cmdargs['flow_command']}'.\n") + print(f"\nInvalid OPM flow command '-f {cmdargs.flow_command}'.\n") raise SystemExit(1) try: flow_result = subprocess.run( @@ -520,20 +517,20 @@ def _check_cmdargs(cmdargs: dict[str, str]) -> None: flow_result = None if flow_result is None or flow_result.returncode != 0: print( - f"\nThe OPM flow executable '-f {cmdargs['flow_command']}' " + f"\nThe OPM flow executable '-f {cmdargs.flow_command}' " "is not available or not working.\n" ) raise SystemExit(1) - coarsening = cmdargs["coarsening"] - x_coarsening = cmdargs["x_coarsening"] - y_coarsening = cmdargs["y_coarsening"] - z_coarsening = cmdargs["z_coarsening"] - refinement = cmdargs["refinement"] - x_refinement = cmdargs["x_refinement"] - y_refinement = cmdargs["y_refinement"] - z_refinement = cmdargs["z_refinement"] - vicinity = cmdargs["vicinity_specification"] - transformation = cmdargs["grid_transformation"] + coarsening = cmdargs.coarsening + x_coarsening = cmdargs.x_coarsening + y_coarsening = cmdargs.y_coarsening + z_coarsening = cmdargs.z_coarsening + refinement = cmdargs.refinement + x_refinement = cmdargs.x_refinement + y_refinement = cmdargs.y_refinement + z_refinement = cmdargs.z_refinement + vicinity = cmdargs.vicinity_specification + transformation = cmdargs.grid_transformation directional_coarsening = any([x_coarsening, y_coarsening, z_coarsening]) directional_refinement = any([x_refinement, y_refinement, z_refinement]) has_coarsening = bool(coarsening or directional_coarsening) @@ -636,7 +633,7 @@ def _check_cmdargs(cmdargs: dict[str, str]) -> None: ] z_groups = z_coarsening.split(",") if ":" in z_coarsening else [] for option, name, valid_methods in aggregation_options: - value = cmdargs[name].strip() + value = getattr(cmdargs, name).strip() methods = value.split(",") if value else [] if any(method not in valid_methods for method in methods): print( @@ -658,30 +655,30 @@ def _check_cmdargs(cmdargs: dict[str, str]) -> None: raise SystemExit(1) # Options controlling property aggregation require coarsening if not has_coarsening: - if cmdargs["active_cell_methods"] != "mode": + if cmdargs.active_cell_methods != "mode": print("\nInvalid combination, '-a' can only be used with coarsening.\n") raise SystemExit(1) - if cmdargs["discrete_aggregation_method"] != "mode": + if cmdargs.discrete_aggregation_method != "mode": print("\nInvalid combination, '-n' can only be used with coarsening.\n") raise SystemExit(1) - if cmdargs["continuous_aggregation_method"]: + if cmdargs.continuous_aggregation_method: print("\nInvalid combination, '-s' can only be used with coarsening.\n") raise SystemExit(1) - if cmdargs["transmissibility_coarsening_method"] != "0": + if cmdargs.transmissibility_coarsening_method != "0": print("\nInvalid combination, '-t' can only be used with coarsening.\n") raise SystemExit(1) - if cmdargs["jump_thresholds"]: + if cmdargs.jump_thresholds: print("\nInvalid combination, '-j' can only be used with coarsening.\n") raise SystemExit(1) - if cmdargs["dual_porosity_criterion"]: + if cmdargs.dual_porosity_criterion: print("\nInvalid combination, '-dual' can only be used with coarsening.\n") raise SystemExit(1) # Fluid-in-place correction is not supported for extracted submodels - if vicinity and cmdargs["correct_fluid_in_place"] == "1": + if vicinity and cmdargs.correct_fluid_in_place == "1": print("\nInvalid combination, '-q' cannot be used with '-v'.\n") raise SystemExit(1) # Validate pore-volume correction combinations - pore_volume_correction = cmdargs["pore_volume_correction"] + pore_volume_correction = cmdargs.pore_volume_correction if pore_volume_correction == "1" and not (has_coarsening or vicinity): print("\nInvalid combination, '-p 1' requires coarsening or '-v'.\n") raise SystemExit(1) @@ -692,7 +689,7 @@ def _check_cmdargs(cmdargs: dict[str, str]) -> None: ) raise SystemExit(1) # Validate the jump thresholds - jump_thresholds = cmdargs["jump_thresholds"] + jump_thresholds = cmdargs.jump_thresholds if jump_thresholds: try: jump_values = [float(value.strip()) for value in jump_thresholds.split(",")] @@ -705,7 +702,7 @@ def _check_cmdargs(cmdargs: dict[str, str]) -> None: ) raise SystemExit(1) # Validate requested input-model indices - requested_ijk = cmdargs["requested_ijk"] + requested_ijk = cmdargs.requested_ijk if requested_ijk and not re.fullmatch( r"[1-9]\d*\s*,\s*[1-9]\d*\s*,\s*[1-9]\d*", requested_ijk, @@ -789,7 +786,7 @@ def _check_cmdargs(cmdargs: dict[str, str]) -> None: ) raise SystemExit(1) # Validate the dual-porosity criterion - dual_porosity_criterion = cmdargs["dual_porosity_criterion"] + dual_porosity_criterion = cmdargs.dual_porosity_criterion dual_criterion_pattern = re.compile( rf"[A-Za-z][A-Za-z0-9_]*\s*(?:<=|>=|==|!=|<|>)\s*{number}" r"(?:\s*,\s*vertical\s+TF\s*=\s*0)?", diff --git a/src/pycopm/utils/coarsening.py b/src/pycopm/utils/coarsening.py index 67832bd..f3ea625 100644 --- a/src/pycopm/utils/coarsening.py +++ b/src/pycopm/utils/coarsening.py @@ -7,6 +7,7 @@ The module supports deck-based coarsening and the TOML workflows used to generate reduced Norne and Drogon models.""" +import argparse import csv import re import sys @@ -98,7 +99,9 @@ class CoarseningMaps: dual_defaults: dict[str, float] = field(default_factory=dict) -def create_coarsening_maps(dck: ConfigViaDeck, cmdargs) -> CoarseningMaps: +def create_coarsening_maps( + dck: ConfigViaDeck, cmdargs: argparse.Namespace +) -> CoarseningMaps: """Create axis mappings and assign original cells to coarse cells. Parameters @@ -114,11 +117,11 @@ def create_coarsening_maps(dck: ConfigViaDeck, cmdargs) -> CoarseningMaps: CoarseningMaps Axis mappings, cell groups, and dual-porosity masks.""" cijk, refs = parse_axis_modifications( - cmdargs["coarsening"], + cmdargs.coarsening, [ - cmdargs["x_coarsening"], - cmdargs["y_coarsening"], - cmdargs["z_coarsening"], + cmdargs.x_coarsening, + cmdargs.y_coarsening, + cmdargs.z_coarsening, ], ) matrix_mask = np.ones(dck.original_porv.size) diff --git a/src/pycopm/utils/generate_decks.py b/src/pycopm/utils/generate_decks.py index f5ac3bc..1fc9b35 100644 --- a/src/pycopm/utils/generate_decks.py +++ b/src/pycopm/utils/generate_decks.py @@ -4,6 +4,7 @@ """Coordinate coarsening, refinement, submodel extraction, and grid transformations.""" +import argparse import csv import subprocess import sys @@ -51,7 +52,7 @@ ) -def create_deck(dck: ConfigViaDeck, cmdargs) -> None: +def create_deck(dck: ConfigViaDeck, cmdargs: argparse.Namespace) -> None: """Generate a modified OPM deck and its include files. The selected workflow can preprocess the input deck, coarsen or refine the diff --git a/src/pycopm/utils/input_values.py b/src/pycopm/utils/input_values.py index 09611b4..a696557 100644 --- a/src/pycopm/utils/input_values.py +++ b/src/pycopm/utils/input_values.py @@ -4,6 +4,7 @@ """Create configuration objects from command-line arguments and TOML files.""" +import argparse import tomllib from pathlib import Path @@ -14,7 +15,7 @@ from pycopm.config.config import ConfigViaDeck, ConfigViaTOML -def create_deck_config(cmdargs: dict[str, str]) -> ConfigViaDeck: +def create_deck_config(cmdargs: argparse.Namespace) -> ConfigViaDeck: """Create a deck configuration from parsed command arguments. Parameters @@ -26,46 +27,42 @@ def create_deck_config(cmdargs: dict[str, str]) -> ConfigViaDeck: ------- ConfigViaDeck Configuration for a deck-based workflow.""" - input_path = Path(cmdargs["input_deck_path"]) - return ConfigViaDeck( - output_directory=str(Path(cmdargs["output_directory"]).expanduser().resolve()), - flow_command=cmdargs["flow_command"], - input_deck_name=input_path.stem, - input_deck_path=str(input_path.with_suffix("")), - active_cell_methods=cmdargs["active_cell_methods"].split(","), - discrete_aggregation_method=cmdargs["discrete_aggregation_method"].split(","), - continuous_aggregation_method=cmdargs["continuous_aggregation_method"].split( - "," - ), - jump_thresholds=cmdargs["jump_thresholds"].split(","), - output_deck_name=cmdargs["output_deck_name"], - execution_mode=cmdargs["execution_mode"], - include_prefix=cmdargs["include_prefix"], - requested_ijk=[cmdargs["requested_ijk"]], - completion_removal_level=int(cmdargs["completion_removal_level"]), - deck_encoding=cmdargs["deck_encoding"], - pore_volume_correction=int(cmdargs["pore_volume_correction"]), - correct_fluid_in_place=int(cmdargs["correct_fluid_in_place"]), + output_directory=str(Path(cmdargs.output_directory).expanduser().resolve()), + flow_command=cmdargs.flow_command, + input_deck_name=Path(cmdargs.input_deck_path).stem, + input_deck_path=str(Path(cmdargs.input_deck_path).with_suffix("")), + active_cell_methods=cmdargs.active_cell_methods.split(","), + discrete_aggregation_method=cmdargs.discrete_aggregation_method.split(","), + continuous_aggregation_method=cmdargs.continuous_aggregation_method.split(","), + jump_thresholds=cmdargs.jump_thresholds.split(","), + output_deck_name=cmdargs.output_deck_name, + execution_mode=cmdargs.execution_mode, + include_prefix=cmdargs.include_prefix, + requested_ijk=[cmdargs.requested_ijk], + completion_removal_level=int(cmdargs.completion_removal_level), + deck_encoding=cmdargs.deck_encoding, + pore_volume_correction=int(cmdargs.pore_volume_correction), + correct_fluid_in_place=int(cmdargs.correct_fluid_in_place), transmissibility_coarsening_method=int( - cmdargs["transmissibility_coarsening_method"] + cmdargs.transmissibility_coarsening_method ), - vicinity_specification=cmdargs["vicinity_specification"], - grid_transformation=cmdargs["grid_transformation"], - write_explicit_solution=int(cmdargs["write_explicit_solution"]) == 1, - dual_porosity_criterion=cmdargs["dual_porosity_criterion"], - significant_digits=int(cmdargs["significant_digits"]), + vicinity_specification=cmdargs.vicinity_specification, + grid_transformation=cmdargs.grid_transformation, + write_explicit_solution=int(cmdargs.write_explicit_solution) == 1, + dual_porosity_criterion=cmdargs.dual_porosity_criterion, + significant_digits=int(cmdargs.significant_digits), refinement_enabled=bool( - cmdargs["x_refinement"] - or cmdargs["y_refinement"] - or cmdargs["z_refinement"] - or cmdargs["refinement"] + cmdargs.x_refinement + or cmdargs.y_refinement + or cmdargs.z_refinement + or cmdargs.refinement ), coarsening_enabled=bool( - cmdargs["x_coarsening"] - or cmdargs["y_coarsening"] - or cmdargs["z_coarsening"] - or cmdargs["coarsening"] + cmdargs.x_coarsening + or cmdargs.y_coarsening + or cmdargs.z_coarsening + or cmdargs.coarsening ), ) diff --git a/src/pycopm/utils/refinement.py b/src/pycopm/utils/refinement.py index e2139ee..c6b2a25 100644 --- a/src/pycopm/utils/refinement.py +++ b/src/pycopm/utils/refinement.py @@ -4,6 +4,7 @@ """Refine a corner-point grid and its reservoir properties.""" +import argparse import sys from contextlib import nullcontext from dataclasses import dataclass @@ -35,7 +36,9 @@ class RefinementMaps: refined_cell_counts: NDArray -def create_refinement_maps(dck: ConfigViaDeck, cmdargs) -> RefinementMaps: +def create_refinement_maps( + dck: ConfigViaDeck, cmdargs: argparse.Namespace +) -> RefinementMaps: """Create axis refinement maps and update output dimensions. A refinement value of ``n`` divides an original interval into ``n + 1`` @@ -54,11 +57,11 @@ def create_refinement_maps(dck: ConfigViaDeck, cmdargs) -> RefinementMaps: RefinementMaps Axis values and the number of subdivisions per original cell.""" cijk, refs = parse_axis_modifications( - cmdargs["refinement"], + cmdargs.refinement, [ - cmdargs["x_refinement"], - cmdargs["y_refinement"], - cmdargs["z_refinement"], + cmdargs.x_refinement, + cmdargs.y_refinement, + cmdargs.z_refinement, ], ) values = [] diff --git a/tests/scripts/docs_check_outputs.sh b/tests/scripts/docs_check_outputs.sh index e69afe8..0d3e433 100644 --- a/tests/scripts/docs_check_outputs.sh +++ b/tests/scripts/docs_check_outputs.sh @@ -1,42 +1,44 @@ -files=( - "test_outputs/docs_via_deck_dual_coarsening/dual_pressure-0pressure_i,1,k_t2.png" - "test_outputs/docs_via_deck_drogon/drogon_pycopm_comparison.png" - "test_outputs/docs_via_deck_drogon/drogon_generic_plopm.png" - "test_outputs/docs_via_deck_drogon/sgas.gif" - "test_outputs/docs_via_deck_norne/norne_plopm.png" - "test_outputs/docs_config_views/index_plopm.png" - "test_outputs/docs_via_deck_smeaheia/smeaheia.png" - "test_outputs/docs_via_deck_spe10/spe10_plopm.png" - "test_outputs/docs_via_deck_hello_world/hello_world_3_submodel_refined_rotated.png" - "test_outputs/docs_via_deck_hello_world/hello_world_1_left.png" - "test_outputs/docs_via_deck_hello_world/hello_world_3_submodel.png" - "test_outputs/docs_via_deck_hello_world/hello_world_2.png" - "test_outputs/docs_via_deck_hello_world/hello_world_1_right.png" - "test_outputs/docs_via_deck_hello_world/hello_world_3_submodel_refined.png" - "test_outputs/docs_via_config_drogon/drogon_coarser_plopm.png" - "test_outputs/docs_theory_refinements/refinement_plopm.png" - "test_outputs/docs_theory_coarsening/coarsening_plopm.png" - "test_outputs/docs_theory_submodels/submodel_plopm.png" - "test_outputs/docs_theory_submodels/submodel_porv_plopm.png" - "test_outputs/docs_theory_submodels/submodelwell_plopm.png" - "test_outputs/docs_theory_transformations/transformation_plopm.png" -) +files=" +test_outputs/docs_via_deck_dual_coarsening/dual_pressure-0pressure_i,1,k_t2.png +test_outputs/docs_via_deck_drogon/drogon_pycopm_comparison.png +test_outputs/docs_via_deck_drogon/drogon_generic_plopm.png +test_outputs/docs_via_deck_drogon/sgas.gif +test_outputs/docs_via_deck_norne/norne_plopm.png +test_outputs/docs_config_views/index_plopm.png +test_outputs/docs_via_deck_smeaheia/smeaheia.png +test_outputs/docs_via_deck_spe10/spe10_plopm.png +test_outputs/docs_via_deck_hello_world/hello_world_3_submodel_refined_rotated.png +test_outputs/docs_via_deck_hello_world/hello_world_1_left.png +test_outputs/docs_via_deck_hello_world/hello_world_3_submodel.png +test_outputs/docs_via_deck_hello_world/hello_world_2.png +test_outputs/docs_via_deck_hello_world/hello_world_1_right.png +test_outputs/docs_via_deck_hello_world/hello_world_3_submodel_refined.png +test_outputs/docs_via_config_drogon/drogon_coarser_plopm.png +test_outputs/docs_theory_refinements/refinement_plopm.png +test_outputs/docs_theory_coarsening/coarsening_plopm.png +test_outputs/docs_theory_submodels/submodel_plopm.png +test_outputs/docs_theory_submodels/submodel_porv_plopm.png +test_outputs/docs_theory_submodels/submodelwell_plopm.png +test_outputs/docs_theory_transformations/transformation_plopm.png +" missing_file="test_outputs/missing_docs_files.txt" missing=0 rm -f "$missing_file" -for f in "${files[@]}"; do - if [[ ! -f "$f" ]]; then +printf '%s\n' "$files" | while IFS= read -r f; do + [ -z "$f" ] && continue + if [ ! -f "$f" ]; then echo "$f" >> "$missing_file" - ((missing++)) fi done -if (( missing == 0 )); then +if [ "$missing" -eq 0 ]; then echo "All figures and files exist." + return 0 else echo "$missing figure(s) or file(s) missing." echo "See $missing_file" + return 1 fi diff --git a/tests/test_8_dual.py b/tests/test_8_dual.py index e89ab19..b993075 100644 --- a/tests/test_8_dual.py +++ b/tests/test_8_dual.py @@ -129,7 +129,6 @@ def test_8_dual(flow, tmp_path, monkeypatch, deck, z_range, dual_expr, expected) "DUAL", "-dual", dual_expr, - "D", "-t", "1" if z_range == "1:2,3:4" and dual_expr == "poro <= 0.1" else "2", "-m",