diff --git a/.badgery.yaml b/.badgery.yaml
index f22752fa..99bcdc1c 100644
--- a/.badgery.yaml
+++ b/.badgery.yaml
@@ -5,19 +5,18 @@ cards:
   - group: Tests
     type: gh_action
     title: Code/package tests (GitHub)
-    file: test.yaml
+    file: test.yml
     enabled: true
-
   - group: Tests
     type: gh_action
     title: Tutorial tests (GitHub)
-    file: tutorial-tests.yaml
+    file: tutorial-tests.yml
     enabled: true
 
   - group: Tests
     type: gh_action
     title: Package tests (PyPI)
-    file: pypi-test.yaml
+    file: pypi-test.yml
     enabled: true
 
   - group: Code Quality
@@ -60,15 +59,14 @@ cards:
     title: Docstring coverage (interrogate)
     report: reports/{branch}/coverage-docstring.txt
     enabled: true
-
   - group: Build & Release
     type: gh_action
     title: Publishing (PyPI)
-    workflow: pypi-publish.yaml
+    workflow: pypi-publish.yml
     enabled: true
 
   - group: Build & Release
     type: gh_action
     title: Docs build/deployment
-    workflow: docs.yaml
+    workflow: docs.yml
     enabled: true
diff --git a/.copier-answers.yml b/.copier-answers.yml
new file mode 100644
index 00000000..778744fa
--- /dev/null
+++ b/.copier-answers.yml
@@ -0,0 +1,27 @@
+# WARNING: Do not edit this file manually.
+# Any changes will be overwritten by Copier.
+_commit: v0.10.1-25-ga5301e9
+_src_path: gh:easyscience/templates
+app_docs_url: https://easyscience.github.io/diffraction-app
+app_doi: 10.5281/zenodo.18163581
+app_package_name: easydiffraction_app
+app_python: '3.13'
+app_repo_name: diffraction-app
+home_page_url: https://easyscience.github.io/diffraction
+home_repo_name: diffraction
+lib_docs_url: https://easyscience.github.io/diffraction-lib
+lib_doi: 10.5281/zenodo.18163581
+lib_package_name: easydiffraction
+lib_python_max: '3.13'
+lib_python_min: '3.11'
+lib_repo_name: diffraction-lib
+project_contact_email: support@easydiffraction.org
+project_copyright_years: 2021-2026
+project_extended_description: A software for calculating neutron powder diffraction
+    patterns based on a structural model and refining its parameters against experimental
+    data
+project_name: EasyDiffraction
+project_short_description: Diffraction data analysis
+project_shortcut: ED
+project_type: both
+template_type: lib
diff --git a/.github/actions/download-artifact/action.yml b/.github/actions/download-artifact/action.yml
new file mode 100644
index 00000000..e4fd62f5
--- /dev/null
+++ b/.github/actions/download-artifact/action.yml
@@ -0,0 +1,50 @@
+name: 'Download artifact'
+description: 'Generic wrapper for actions/download-artifact'
+inputs:
+  name:
+    description: 'Name of the artifact to download'
+    required: true
+
+  path:
+    description: 'Destination path'
+    required: false
+    default: '.'
+
+  pattern:
+    description: 'Glob pattern to match artifact names (optional)'
+    required: false
+    default: ''
+
+  merge-multiple:
+    description: 'Merge multiple artifacts into the same directory'
+    required: false
+    default: 'false'
+
+  github-token:
+    description: 'GitHub token for cross-repo download (optional)'
+    required: false
+    default: ''
+
+  repository:
+    description: 'owner/repo for cross-repo download (optional)'
+    required: false
+    default: ''
+
+  run-id:
+    description: 'Workflow run ID for cross-run download (optional)'
+    required: false
+    default: ''
+
+runs:
+  using: 'composite'
+  steps:
+    - name: Download artifact
+      uses: actions/download-artifact@v4
+      with:
+        name: ${{ inputs.name }}
+        path: ${{ inputs.path }}
+        pattern: ${{ inputs.pattern }}
+        merge-multiple: ${{ inputs.merge-multiple }}
+        github-token: ${{ inputs.github-token }}
+        repository: ${{ inputs.repository }}
+        run-id: ${{ inputs.run-id }}
diff --git a/.github/actions/github-script/action.yml b/.github/actions/github-script/action.yml
new file mode 100644
index 00000000..ab32da56
--- /dev/null
+++ b/.github/actions/github-script/action.yml
@@ -0,0 +1,19 @@
+name: 'GitHub Script'
+description: 'Wrapper for actions/github-script'
+inputs:
+  script:
+    description: 'JavaScript to run'
+    required: true
+
+  github-token:
+    description: 'GitHub token (defaults to github.token)'
+    required: false
+    default: ${{ github.token }}
+
+runs:
+  using: 'composite'
+  steps:
+    - uses: actions/github-script@v8
+      with:
+        script: ${{ inputs.script }}
+        github-token: ${{ inputs.github-token }}
diff --git a/.github/actions/setup-easyscience-bot/action.yml b/.github/actions/setup-easyscience-bot/action.yml
new file mode 100644
index 00000000..4b28eaf8
--- /dev/null
+++ b/.github/actions/setup-easyscience-bot/action.yml
@@ -0,0 +1,40 @@
+name: 'Setup EasyScience bot for pushing'
+description: 'Create GitHub App token and configure git identity + origin remote'
+inputs:
+  app-id:
+    description: 'GitHub App ID'
+    required: true
+  private-key:
+    description: 'GitHub App private key (PEM)'
+    required: true
+  repositories:
+    description: 'Additional repositories to grant access to (newline-separated)'
+    required: false
+    default: ''
+
+outputs:
+  token:
+    description: 'Installation access token'
+    value: ${{ steps.app-token.outputs.token }}
+
+runs:
+  using: 'composite'
+  steps:
+    - name: Create GitHub App installation token
+      id: app-token
+      uses: actions/create-github-app-token@v2
+      with:
+        app-id: ${{ inputs.app-id }}
+        private-key: ${{ inputs.private-key }}
+        repositories: ${{ inputs.repositories }}
+
+    - name: Configure git for pushing
+      shell: bash
+      run: |
+        git config user.name "easyscience[bot]"
+        git config user.email "${{ inputs.app-id }}+easyscience[bot]@users.noreply.github.com"
+
+    - name: Configure origin remote to use the bot token
+      shell: bash
+      run: |
+        git remote set-url origin https://x-access-token:${{ steps.app-token.outputs.token }}@github.com/${{ github.repository }}.git
diff --git a/.github/actions/setup-pixi/action.yml b/.github/actions/setup-pixi/action.yml
new file mode 100644
index 00000000..167ee623
--- /dev/null
+++ b/.github/actions/setup-pixi/action.yml
@@ -0,0 +1,44 @@
+name: 'Setup Pixi Environment'
+description: 'Sets up pixi with common configuration'
+inputs:
+  environments:
+    description: 'Pixi environments to setup'
+    required: false
+    default: 'default'
+  activate-environment:
+    description: 'Environment to activate'
+    required: false
+    default: 'default'
+  run-install:
+    description: 'Whether to run pixi install'
+    required: false
+    default: 'true'
+  locked:
+    description: 'Whether to run pixi install --locked'
+    required: false
+    default: 'false'
+  frozen:
+    description: 'Whether to run pixi install --frozen'
+    required: false
+    default: 'true'
+  cache:
+    description: 'Whether to use cache'
+    required: false
+    default: 'false'
+  post-cleanup:
+    description: 'Whether to run post cleanup'
+    required: false
+    default: 'false'
+
+runs:
+  using: 'composite'
+  steps:
+    - uses: prefix-dev/setup-pixi@v0.9.4
+      with:
+        environments: ${{ inputs.environments }}
+        activate-environment: ${{ inputs.activate-environment }}
+        run-install: ${{ inputs.run-install }}
+        locked: ${{ inputs.locked }}
+        frozen: ${{ inputs.frozen }}
+        cache: ${{ inputs.cache }}
+        post-cleanup: ${{ inputs.post-cleanup }}
diff --git a/.github/actions/upload-artifact/action.yml b/.github/actions/upload-artifact/action.yml
new file mode 100644
index 00000000..825ac396
--- /dev/null
+++ b/.github/actions/upload-artifact/action.yml
@@ -0,0 +1,49 @@
+name: 'Upload artifact'
+description: 'Generic wrapper for actions/upload-artifact'
+inputs:
+  name:
+    description: 'Artifact name'
+    required: true
+
+  path:
+    description: 'File(s)/dir(s)/glob(s) to upload (newline-separated)'
+    required: true
+
+  include-hidden-files:
+    description: 'Include hidden files'
+    required: false
+    default: 'true'
+
+  if-no-files-found:
+    description: 'warn | error | ignore'
+    required: false
+    default: 'error'
+
+  compression-level:
+    description: '0-9 (0 = no compression)'
+    required: false
+    default: '0'
+
+  retention-days:
+    description: 'Retention in days (optional)'
+    required: false
+    default: ''
+
+  overwrite:
+    description: 'Overwrite an existing artifact with the same name'
+    required: false
+    default: 'false'
+
+runs:
+  using: 'composite'
+  steps:
+    - name: Upload artifact
+      uses: actions/upload-artifact@v4
+      with:
+        name: ${{ inputs.name }}
+        path: ${{ inputs.path }}
+        include-hidden-files: ${{ inputs.include-hidden-files }}
+        if-no-files-found: ${{ inputs.if-no-files-found }}
+        compression-level: ${{ inputs.compression-level }}
+        retention-days: ${{ inputs.retention-days }}
+        overwrite: ${{ inputs.overwrite }}
diff --git a/.github/actions/upload-codecov/action.yml b/.github/actions/upload-codecov/action.yml
new file mode 100644
index 00000000..37d6298a
--- /dev/null
+++ b/.github/actions/upload-codecov/action.yml
@@ -0,0 +1,42 @@
+name: 'Upload coverage to Codecov'
+description: 'Generic wrapper for codecov/codecov-action@v5'
+
+inputs:
+  name:
+    description: 'Codecov upload name'
+    required: true
+
+  flags:
+    description: 'Codecov flags'
+    required: false
+    default: ''
+
+  files:
+    description: 'Coverage report files'
+    required: true
+
+  fail_ci_if_error:
+    description: 'Fail CI if upload fails'
+    required: false
+    default: 'true'
+
+  verbose:
+    description: 'Enable verbose output'
+    required: false
+    default: 'true'
+
+  token:
+    description: 'Codecov token'
+    required: true
+
+runs:
+  using: composite
+  steps:
+    - uses: codecov/codecov-action@v5
+      with:
+        name: ${{ inputs.name }}
+        flags: ${{ inputs.flags }}
+        files: ${{ inputs.files }}
+        fail_ci_if_error: ${{ inputs.fail_ci_if_error }}
+        verbose: ${{ inputs.verbose }}
+        token: ${{ inputs.token }}
diff --git a/.github/configs/pages-deployment.json b/.github/configs/pages-deployment.json
new file mode 100644
index 00000000..c0d3fbee
--- /dev/null
+++ b/.github/configs/pages-deployment.json
@@ -0,0 +1,6 @@
+{
+  "source": {
+    "branch": "gh-pages",
+    "path": "/"
+  }
+}
diff --git a/.github/configs/rulesets-develop.json b/.github/configs/rulesets-develop.json
new file mode 100644
index 00000000..04489e52
--- /dev/null
+++ b/.github/configs/rulesets-develop.json
@@ -0,0 +1,37 @@
+{
+  "name": "develop branch",
+  "target": "branch",
+  "enforcement": "active",
+  "conditions": {
+    "ref_name": {
+      "include": ["refs/heads/develop"],
+      "exclude": []
+    }
+  },
+  "bypass_actors": [
+    {
+      "actor_id": 2476259,
+      "actor_type": "Integration",
+      "bypass_mode": "always"
+    }
+  ],
+  "rules": [
+    {
+      "type": "non_fast_forward"
+    },
+    {
+      "type": "deletion"
+    },
+    {
+      "type": "pull_request",
+      "parameters": {
+        "allowed_merge_methods": ["squash"],
+        "dismiss_stale_reviews_on_push": false,
+        "require_code_owner_review": false,
+        "require_last_push_approval": false,
+        "required_approving_review_count": 0,
+        "required_review_thread_resolution": false
+      }
+    }
+  ]
+}
diff --git a/.github/configs/rulesets-gh-pages.json b/.github/configs/rulesets-gh-pages.json
new file mode 100644
index 00000000..ebf38928
--- /dev/null
+++ b/.github/configs/rulesets-gh-pages.json
@@ -0,0 +1,19 @@
+{
+  "name": "gh-pages branch",
+  "target": "branch",
+  "enforcement": "active",
+  "conditions": {
+    "ref_name": {
+      "include": ["refs/heads/gh-pages"],
+      "exclude": []
+    }
+  },
+  "rules": [
+    {
+      "type": "non_fast_forward"
+    },
+    {
+      "type": "deletion"
+    }
+  ]
+}
diff --git a/.github/configs/rulesets-master.json b/.github/configs/rulesets-master.json
new file mode 100644
index 00000000..f658a5c6
--- /dev/null
+++ b/.github/configs/rulesets-master.json
@@ -0,0 +1,30 @@
+{
+  "name": "master branch",
+  "target": "branch",
+  "enforcement": "active",
+  "conditions": {
+    "ref_name": {
+      "include": ["~DEFAULT_BRANCH"],
+      "exclude": []
+    }
+  },
+  "rules": [
+    {
+      "type": "non_fast_forward"
+    },
+    {
+      "type": "deletion"
+    },
+    {
+      "type": "pull_request",
+      "parameters": {
+        "allowed_merge_methods": ["merge"],
+        "dismiss_stale_reviews_on_push": false,
+        "require_code_owner_review": false,
+        "require_last_push_approval": false,
+        "required_approving_review_count": 0,
+        "required_review_thread_resolution": false
+      }
+    }
+  ]
+}
diff --git a/.github/copilot-instructions.md b/.github/copilot-instructions.md
index 58e7d29d..d29a15d1 100644
--- a/.github/copilot-instructions.md
+++ b/.github/copilot-instructions.md
@@ -2,8 +2,8 @@
 
 ## Project Context
 
-- Python library for crystallographic diffraction analysis, such as refinement
-  of the structural model against experimental data.
+- Python library for crystallographic diffraction analysis, such as
+  refinement of the structural model against experimental data.
 - Support for
   - sample_form: powder and single crystal
   - beam_mode: time-of-flight and constant wavelength
@@ -13,124 +13,140 @@
   - `cryspy` for Bragg diffraction
   - `crysfml` for Bragg diffraction
   - `pdffit2` for Total scattering
-- Follow CIF naming conventions where possible. In some places, we deviate for
-  better API design, but we try to keep the spirit of the CIF names.
+- Follow CIF naming conventions where possible. In some places, we
+  deviate for better API design, but we try to keep the spirit of the
+  CIF names.
 - Reusing the concept of datablocks and categories from CIF. We have
   `DatablockItem` (structure or experiment) and `DatablockCollection`
-  (collection of structures or experiments), as well as `CategoryItem` (single
-  categories in CIF) and `CategoryCollection` (loop categories in CIF).
+  (collection of structures or experiments), as well as `CategoryItem`
+  (single categories in CIF) and `CategoryCollection` (loop categories
+  in CIF).
 - Metadata via frozen dataclasses: `TypeInfo`, `Compatibility`,
   `CalculatorSupport`.
-- The API is designed for scientists who use EasyDiffraction as a final product
-  in a user-friendly, intuitive way. The target users are not software
-  developers and may have little or no Python experience. The design is not
-  oriented toward developers building their own tooling on top of the library,
-  although experienced developers will find their own way. Prioritize
-  discoverability, clear error messages, and safe defaults so that
-  non-programmers are not stuck by standard API conventions.
-- This project must be developed to be as error-free as possible, with the same
-  rigour applied to critical software (e.g. nuclear-plant control systems).
-  Every code path must be tested, edge cases must be handled explicitly, and
-  silent failures are not acceptable.
+- The API is designed for scientists who use EasyDiffraction as a final
+  product in a user-friendly, intuitive way. The target users are not
+  software developers and may have little or no Python experience. The
+  design is not oriented toward developers building their own tooling on
+  top of the library, although experienced developers will find their
+  own way. Prioritize discoverability, clear error messages, and safe
+  defaults so that non-programmers are not stuck by standard API
+  conventions.
+- This project must be developed to be as error-free as possible, with
+  the same rigour applied to critical software (e.g. nuclear-plant
+  control systems). Every code path must be tested, edge cases must be
+  handled explicitly, and silent failures are not acceptable.
 
 ## Code Style
 
-- Use snake_case for functions and variables, PascalCase for classes, and
-  UPPER_SNAKE_CASE for constants.
+- Use snake_case for functions and variables, PascalCase for classes,
+  and UPPER_SNAKE_CASE for constants.
 - Use `from __future__ import annotations` in every module.
 - Type-annotate all public function signatures.
-- Docstrings on all public classes and methods (Google style).
+- Docstrings on all public classes and methods (numpy style).
 - Prefer flat over nested, explicit over clever.
-- Write straightforward code; do not add defensive checks for unlikely edge
-  cases.
+- Write straightforward code; do not add defensive checks for unlikely
+  edge cases.
 - Prefer composition over deep inheritance.
-- One class per file when the class is substantial; group small related classes.
-- Avoid `**kwargs`; use explicit keyword arguments for clarity, autocomplete,
-  and typo detection.
-- Do not use string-based dispatch (e.g. `getattr(self, f'_{name}')`) to route
-  to attributes or methods. Instead, write explicit named methods (e.g.
-  `_set_sample_form`, `_set_beam_mode`). This keeps the code greppable,
-  autocomplete-friendly, and type-safe.
-- Public parameters and descriptors are either **editable** (property with both
-  getter and setter) or **read-only** (property with getter only). If internal
-  code needs to mutate a read-only property, add a private `_set_<name>` method
-  instead of exposing a public setter.
+- One class per file when the class is substantial; group small related
+  classes.
+- Avoid `**kwargs`; use explicit keyword arguments for clarity,
+  autocomplete, and typo detection.
+- Do not use string-based dispatch (e.g. `getattr(self, f'_{name}')`) to
+  route to attributes or methods. Instead, write explicit named methods
+  (e.g. `_set_sample_form`, `_set_beam_mode`). This keeps the code
+  greppable, autocomplete-friendly, and type-safe.
+- Public parameters and descriptors are either **editable** (property
+  with both getter and setter) or **read-only** (property with getter
+  only). If internal code needs to mutate a read-only property, add a
+  private `_set_<name>` method instead of exposing a public setter.
 
 ## Architecture
 
-- Eager imports at the top of the module by default. Use lazy imports (inside a
-  method body) only when necessary to break circular dependencies or to keep
-  `core/` free of heavy utility imports on rarely-called paths (e.g. `help()`).
+- Eager imports at the top of the module by default. Use lazy imports
+  (inside a method body) only when necessary to break circular
+  dependencies or to keep `core/` free of heavy utility imports on
+  rarely-called paths (e.g. `help()`).
 - No `pkgutil` / `importlib` auto-discovery patterns.
 - No background/daemon threads.
 - No monkey-patching or runtime class mutation.
 - Do not use `__all__` in modules; instead, rely on explicit imports in
   `__init__.py` to control the public API.
-- Do not use redundant `import X as X` aliases in `__init__.py`. Use plain
-  `from module import X`.
-- Concrete classes use `@Factory.register` decorators. To trigger registration,
-  each package's `__init__.py` must explicitly import every concrete class (e.g.
-  `from .chebyshev import ChebyshevPolynomialBackground`). When adding a new
-  concrete class, always add its import to the corresponding `__init__.py`.
-- Switchable categories (those whose implementation can be swapped at runtime
-  via a factory) follow a fixed naming convention on the owner (experiment,
-  structure, or analysis): `<category>` (read-only property), `<category>_type`
-  (getter + setter), `show_supported_<category>_types()`,
-  `show_current_<category>_type()`. The owner class owns the type setter and the
-  show methods; the show methods delegate to `Factory.show_supported(...)`
-  passing context. Every factory-created category must have this full API, even
-  if only one implementation exists today.
-- Categories are flat siblings within their owner (datablock or analysis). A
-  category must never be a child of another category of a different type.
-  Categories can reference each other via IDs, but not via parent-child nesting.
-- Every finite, closed set of values (factory tags, experiment axes, category
-  descriptors with enumerated choices) must use a `(str, Enum)` class. Internal
-  code compares against enum members, never raw strings.
+- Do not use redundant `import X as X` aliases in `__init__.py`. Use
+  plain `from module import X`.
+- Concrete classes use `@Factory.register` decorators. To trigger
+  registration, each package's `__init__.py` must explicitly import
+  every concrete class (e.g.
+  `from .chebyshev import ChebyshevPolynomialBackground`). When adding a
+  new concrete class, always add its import to the corresponding
+  `__init__.py`.
+- Switchable categories (those whose implementation can be swapped at
+  runtime via a factory) follow a fixed naming convention on the owner
+  (experiment, structure, or analysis): `<category>` (read-only
+  property), `<category>_type` (getter + setter),
+  `show_supported_<category>_types()`, `show_current_<category>_type()`.
+  The owner class owns the type setter and the show methods; the show
+  methods delegate to `Factory.show_supported(...)` passing context.
+  Every factory-created category must have this full API, even if only
+  one implementation exists today.
+- Categories are flat siblings within their owner (datablock or
+  analysis). A category must never be a child of another category of a
+  different type. Categories can reference each other via IDs, but not
+  via parent-child nesting.
+- Every finite, closed set of values (factory tags, experiment axes,
+  category descriptors with enumerated choices) must use a `(str, Enum)`
+  class. Internal code compares against enum members, never raw strings.
 - Keep `core/` free of domain logic — only base classes and utilities.
-- Don't introduce a new abstraction until there is a concrete second use case.
+- Don't introduce a new abstraction until there is a concrete second use
+  case.
 - Don't add dependencies without asking.
 
 ## Changes
 
-- Before implementing any structural or design change (new categories, new
-  factories, switchable-category wiring, new datablocks, CIF serialisation
-  changes), read `docs/architecture/architecture.md` to understand the current
-  design choices and conventions. Follow the documented patterns (factory
-  registration, switchable-category naming, metadata classification, etc.) to
-  stay consistent with the rest of the codebase. For localised bug fixes or test
-  updates, the rules in this file are sufficient.
-- The project is in beta; do not keep legacy code or add deprecation warnings.
-  Instead, update tests and tutorials to follow the current API.
+- Before implementing any structural or design change (new categories,
+  new factories, switchable-category wiring, new datablocks, CIF
+  serialisation changes), read `docs/architecture/architecture.md` to
+  understand the current design choices and conventions. Follow the
+  documented patterns (factory registration, switchable-category naming,
+  metadata classification, etc.) to stay consistent with the rest of the
+  codebase. For localised bug fixes or test updates, the rules in this
+  file are sufficient.
+- The project is in beta; do not keep legacy code or add deprecation
+  warnings. Instead, update tests and tutorials to follow the current
+  API.
 - Minimal diffs: don't rewrite working code just to reformat it.
-- Never remove or replace existing functionality as part of a new change without
-  explicit confirmation. If a refactor would drop features, options, or
-  configurations, highlight every removal and wait for approval.
-- Fix only what's asked; flag adjacent issues as comments, don't fix them
-  silently.
-- Don't add new features or refactor existing code unless explicitly asked.
+- Never remove or replace existing functionality as part of a new change
+  without explicit confirmation. If a refactor would drop features,
+  options, or configurations, highlight every removal and wait for
+  approval.
+- Fix only what's asked; flag adjacent issues as comments, don't fix
+  them silently.
+- Don't add new features or refactor existing code unless explicitly
+  asked.
 - Do not remove TODOs or comments unless the change fully resolves them.
 - When renaming, grep the entire project (code, tests, tutorials, docs).
-- Every change should be atomic and self-contained, small enough to be described
-  by a single commit message. Make one change, suggest the commit message, then
-  stop and wait for confirmation before starting the next change.
+- Every change should be atomic and self-contained, small enough to be
+  described by a single commit message. Make one change, suggest the
+  commit message, then stop and wait for confirmation before starting
+  the next change.
 - When in doubt, ask for clarification before making changes.
 
 ## Workflow
 
-- All open issues, design questions, and planned improvements are tracked in
-  `docs/architecture/issues_open.md`, ordered by priority. When an issue is
-  fully implemented, move it from that file to
+- All open issues, design questions, and planned improvements are
+  tracked in `docs/architecture/issues_open.md`, ordered by priority.
+  When an issue is fully implemented, move it from that file to
   `docs/architecture/issues_closed.md`. When the resolution affects the
   architecture, update the relevant sections of
   `docs/architecture/architecture.md`.
-- After changes, run linting and formatting fixes with `pixi run fix`. Do not
-  check what was auto-fixed, just accept the fixes and move on.
+- After changes, run linting and formatting fixes with `pixi run fix`.
+  Do not check what was auto-fixed, just accept the fixes and move on.
 - After changes, run unit tests with `pixi run unit-tests`.
-- After changes, run integration tests with `pixi run integration-tests`.
+- After changes, run integration tests with
+  `pixi run integration-tests`.
 - After changes, run tutorial tests with `pixi run script-tests`.
-- Suggest a concise commit message (as a code block) after each change (less
-  than 72 characters, imperative mood, without prefixing with the type of
-  change). E.g.:
+- Suggest a concise commit message (as a code block) after each change
+  (less than 72 characters, imperative mood, without prefixing with the
+  type of change). E.g.:
   - Add ChebyshevPolynomialBackground class
   - Implement background_type setter on Experiment
   - Standardize switchable-category naming convention
diff --git a/.github/scripts/backmerge-conflict-issue.js b/.github/scripts/backmerge-conflict-issue.js
new file mode 100644
index 00000000..f6bd98b5
--- /dev/null
+++ b/.github/scripts/backmerge-conflict-issue.js
@@ -0,0 +1,69 @@
+module.exports = async ({ github, context, core }) => {
+  // Repo context
+  const owner = context.repo.owner
+  const repo = context.repo.repo
+
+  // Link to the exact workflow run that detected the conflict
+  const runUrl = `${context.serverUrl}/${owner}/${repo}/actions/runs/${context.runId}`
+
+  // We use a *stable title* so we can find/reuse the same "conflict tracker" issue
+  // instead of creating a new issue on every failed run.
+  const title = 'Backmerge conflict: master → develop'
+
+  // Comment/issue body includes the run URL so maintainers can jump straight to logs.
+  const body = [
+    'Automatic backmerge failed due to merge conflicts.',
+    '',
+    `Workflow run: ${runUrl}`,
+    '',
+    'Manual resolution required.',
+  ].join('\n')
+
+  // Label applied to the tracker issue (assumed to already exist in the repo).
+  const label = '[bot] backmerge'
+
+  // Search issues by title across *open and closed* issues.
+  // Why: if the conflict was resolved previously and the issue was closed,
+  // we prefer to reopen it and append a new comment instead of creating duplicates.
+  const q = `repo:${owner}/${repo} is:issue in:title "${title}"`
+  const search = await github.rest.search.issuesAndPullRequests({
+    q,
+    per_page: 10,
+  })
+
+  // Pick the first exact-title match (search can return partial matches).
+  const existing = search.data.items.find((i) => i.title === title)
+
+  if (existing) {
+    // If a tracker issue exists, reuse it:
+    // - reopen it if needed
+    // - add a comment with the new run URL
+    if (existing.state === 'closed') {
+      await github.rest.issues.update({
+        owner,
+        repo,
+        issue_number: existing.number,
+        state: 'open',
+      })
+    }
+
+    await github.rest.issues.createComment({
+      owner,
+      repo,
+      issue_number: existing.number,
+      body,
+    })
+
+    core.notice(`Conflict issue updated: #${existing.number}`)
+    return
+  }
+
+  // No tracker issue exists yet -> create the first one.
+  await github.rest.issues.create({
+    owner,
+    repo,
+    title,
+    body,
+    labels: [label],
+  })
+}
diff --git a/.github/workflows/backmerge.yaml b/.github/workflows/backmerge.yaml
deleted file mode 100644
index f69b5379..00000000
--- a/.github/workflows/backmerge.yaml
+++ /dev/null
@@ -1,66 +0,0 @@
-# This workflow automatically merges `master` into `develop` whenever a new version tag is pushed (v*).
-#
-# Key points:
-# - Directly merges master into develop without creating a PR.
-# - Skips CI on the merge commit using [skip ci] in the commit message.
-# - The code being merged has already been tested as part of the release process.
-# - This ensures develop stays up-to-date with release changes (version bumps, etc.).
-#
-# Required repo config:
-# https://github.com/organizations/easyscience/settings/secrets/actions
-# https://github.com/organizations/easyscience/settings/variables/actions
-# - Actions secret:   EASYSCIENCE_APP_KEY  (GitHub App private key PEM)
-# - Actions variable: EASYSCIENCE_APP_ID   (GitHub App ID)
-# The GitHub App must be added to the develop branch ruleset bypass list.
-
-name: Backmerge (master -> develop)
-
-on:
-  push:
-    tags: ['v*']
-
-permissions:
-  contents: write
-
-jobs:
-  backmerge:
-    runs-on: ubuntu-latest
-
-    steps:
-      - name: Create GitHub App installation token
-        id: app-token
-        uses: actions/create-github-app-token@v2
-        with:
-          app-id: ${{ vars.EASYSCIENCE_APP_ID }}
-          private-key: ${{ secrets.EASYSCIENCE_APP_KEY }}
-
-      - name: Checkout repository
-        uses: actions/checkout@v5
-        with:
-          fetch-depth: 0
-          token: ${{ steps.app-token.outputs.token }}
-
-      - name: Configure git for pushing
-        run: |
-          git config user.name "easyscience[bot]"
-          git config user.email "${{ vars.EASYSCIENCE_APP_ID }}+easyscience[bot]@users.noreply.github.com"
-
-      - name: Merge master into develop
-        run: |
-          set -euo pipefail
-
-          TAG='${{ github.ref_name }}'
-
-          # Ensure local develop branch exists and is up-to-date with origin
-          git fetch origin develop:develop
-          # Switch to develop branch
-          git checkout develop
-
-          # Merge master into develop (no fast-forward to preserve history)
-          # Use [skip ci] to avoid triggering CI - the code was already tested on master
-          git merge origin/master --no-ff -m "Backmerge: ${TAG} from master into develop [skip ci]"
-
-          # Push the merge commit to develop
-          git push origin develop
-
-          echo "✅ Successfully merged master (${TAG}) into develop"
diff --git a/.github/workflows/backmerge.yml b/.github/workflows/backmerge.yml
new file mode 100644
index 00000000..47b3384a
--- /dev/null
+++ b/.github/workflows/backmerge.yml
@@ -0,0 +1,109 @@
+# This workflow automatically merges `master` into `develop` whenever a
+# new version release with a tag is published. It can also be triggered
+# manually via workflow_dispatch for cases where an automatic backmerge
+# is needed outside of the standard release process.
+# If a merge conflict occurs, the workflow creates an issue to notify
+# maintainers for manual resolution.
+
+name: Backmerge (master → develop)
+
+on:
+  release:
+    types: [published, prereleased]
+  workflow_dispatch:
+
+permissions:
+  contents: write
+  issues: write
+
+concurrency:
+  group: backmerge-master-into-develop
+  cancel-in-progress: false
+
+jobs:
+  backmerge:
+    runs-on: ubuntu-latest
+    timeout-minutes: 10
+
+    steps:
+      - name: Checkout repository (for local actions)
+        uses: actions/checkout@v5
+
+      - name: Setup easyscience[bot]
+        id: bot
+        uses: ./.github/actions/setup-easyscience-bot
+        with:
+          app-id: ${{ vars.EASYSCIENCE_APP_ID }}
+          private-key: ${{ secrets.EASYSCIENCE_APP_KEY }}
+          repositories: ${{ github.event.repository.name }}
+
+      - name: Checkout repository (with bot token)
+        uses: actions/checkout@v5
+        with:
+          fetch-depth: 0
+          token: ${{ steps.bot.outputs.token }}
+
+      - name: Configure git identity
+        run: |
+          git config user.name "easyscience[bot]"
+          git config user.email "${{ vars.EASYSCIENCE_APP_ID }}+easyscience[bot]@users.noreply.github.com"
+
+      - name: Set merge message
+        run: |
+          if [[ "${{ github.event_name }}" == "workflow_dispatch" ]]; then
+            MESSAGE="Backmerge: master into develop (manual) [skip ci]"
+          else
+            TAG="${{ github.event.release.tag_name }}"
+            MESSAGE="Backmerge: master (${TAG}) into develop [skip ci]"
+          fi
+
+          echo "MESSAGE=$MESSAGE" >> "$GITHUB_ENV"
+          echo "message=$MESSAGE" >> "$GITHUB_OUTPUT"
+          echo "📝 Merge message: $MESSAGE" | tee -a "$GITHUB_STEP_SUMMARY"
+
+      - name: Prepare branches
+        run: |
+          git fetch origin master develop
+          git checkout -B develop origin/develop
+
+      - name: Check if develop is already up-to-date
+        id: up_to_date
+        run: |
+          if git merge-base --is-ancestor origin/master develop; then
+            echo "value=true" >> "$GITHUB_OUTPUT"
+            echo "ℹ️ Develop is already up-to-date with master" | tee -a "$GITHUB_STEP_SUMMARY"
+          else
+            echo "value=false" >> "$GITHUB_OUTPUT"
+          fi
+
+      - name: Try merge master into develop
+        id: merge
+        if: steps.up_to_date.outputs.value == 'false'
+        continue-on-error: true
+        run: |
+          if ! git merge origin/master --no-ff -m "${MESSAGE}"; then
+            echo "conflict=true" >> "$GITHUB_OUTPUT"
+            echo "❌ Backmerge conflict detected." | tee -a "$GITHUB_STEP_SUMMARY"
+            git status --porcelain || true
+            exit 0
+          fi
+
+          echo "conflict=false" >> "$GITHUB_OUTPUT"
+          echo "✅ Merge commit created." | tee -a "$GITHUB_STEP_SUMMARY"
+
+      - name: Push to develop (if merge succeeded)
+        if:
+          steps.up_to_date.outputs.value == 'false' && steps.merge.outputs.conflict ==
+          'false'
+        run: |
+          git push origin develop
+          echo "🚀 Backmerge successful: master → develop" | tee -a "$GITHUB_STEP_SUMMARY"
+
+      - name: Create issue (if merge failed with conflicts)
+        if: steps.merge.outputs.conflict == 'true'
+        uses: ./.github/actions/github-script
+        with:
+          github-token: ${{ steps.bot.outputs.token }}
+          script: |
+            const run = require('./.github/scripts/backmerge-conflict-issue.js')
+            await run({ github, context, core })
diff --git a/.github/workflows/cleanup.yaml b/.github/workflows/cleanup.yml
similarity index 88%
rename from .github/workflows/cleanup.yaml
rename to .github/workflows/cleanup.yml
index eef184db..7305679b 100644
--- a/.github/workflows/cleanup.yaml
+++ b/.github/workflows/cleanup.yml
@@ -22,8 +22,8 @@ on:
         default: 6
       delete_workflow_pattern:
         description:
-          'The name or filename of the workflow. if not set then it will target
-          all workflows.'
+          'The name or filename of the workflow. if not set then it will target all
+          workflows.'
         required: false
       delete_workflow_by_state_pattern:
         description:
@@ -40,8 +40,8 @@ on:
           - disabled_manually
       delete_run_by_conclusion_pattern:
         description:
-          'Remove workflow by conclusion: action_required, cancelled, failure,
-          skipped, success'
+          'Remove workflow by conclusion: action_required, cancelled, failure, skipped,
+          success'
         required: true
         default: 'All'
         type: choice
@@ -53,8 +53,13 @@ on:
           - skipped
           - success
       dry_run:
-        description: 'Only log actions, do not perform any delete operations.'
+        description: 'Only log actions, do not perform any delete operations (dry run).'
         required: false
+        default: 'false'
+        type: choice
+        options:
+          - 'false'
+          - 'true'
 
 jobs:
   del-runs:
@@ -71,8 +76,7 @@ jobs:
           repository: ${{ github.repository }}
           retain_days: ${{ github.event.inputs.days }}
           keep_minimum_runs: ${{ github.event.inputs.minimum_runs }}
-          delete_workflow_pattern:
-            ${{ github.event.inputs.delete_workflow_pattern }}
+          delete_workflow_pattern: ${{ github.event.inputs.delete_workflow_pattern }}
           delete_workflow_by_state_pattern:
             ${{ github.event.inputs.delete_workflow_by_state_pattern }}
           delete_run_by_conclusion_pattern:
diff --git a/.github/workflows/coverage.yaml b/.github/workflows/coverage.yml
similarity index 50%
rename from .github/workflows/coverage.yaml
rename to .github/workflows/coverage.yml
index 96ae3386..cd9ff1e0 100644
--- a/.github/workflows/coverage.yaml
+++ b/.github/workflows/coverage.yml
@@ -3,6 +3,8 @@ name: Coverage checks
 on:
   # Trigger the workflow on push
   push:
+    # Do not run on version tags (those are handled by other workflows)
+    tags-ignore: ['v*']
   # Trigger the workflow on pull request
   pull_request:
   # Allows you to run this workflow manually from the Actions tab
@@ -16,8 +18,7 @@ permissions:
 # Allow only one concurrent workflow, skipping runs queued between the run
 # in-progress and latest queued. And cancel in-progress runs.
 concurrency:
-  group:
-    ${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }}
+  group: ${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }}
   cancel-in-progress: true
 
 # Set the environment variables to be used in all jobs defined in this workflow
@@ -34,18 +35,7 @@ jobs:
         uses: actions/checkout@v5
 
       - name: Set up pixi
-        uses: prefix-dev/setup-pixi@v0.9.3
-        with:
-          environments: default
-          activate-environment: default
-          run-install: true
-          frozen: true
-          cache: false
-          post-cleanup: false
-
-      - name: Install and setup development dependencies
-        shell: bash
-        run: pixi run dev
+        uses: ./.github/actions/setup-pixi
 
       - name: Run docstring coverage
         run: pixi run docstring-coverage
@@ -59,34 +49,21 @@ jobs:
         uses: actions/checkout@v5
 
       - name: Set up pixi
-        uses: prefix-dev/setup-pixi@v0.9.3
-        with:
-          environments: default
-          activate-environment: default
-          run-install: true
-          frozen: true
-          cache: false
-          post-cleanup: false
-
-      - name: Install and setup development dependencies
-        shell: bash
-        run: pixi run dev
+        uses: ./.github/actions/setup-pixi
 
       - name: Run unit tests with coverage
         run: pixi run unit-tests-coverage --cov-report=xml:coverage-unit.xml
 
       - name: Upload unit tests coverage to Codecov
         if: ${{ !cancelled() }}
-        uses: codecov/codecov-action@v5
+        uses: ./.github/actions/upload-codecov
         with:
           name: unit-tests-job
           flags: unittests
           files: ./coverage-unit.xml
-          fail_ci_if_error: true
-          verbose: true
           token: ${{ secrets.CODECOV_TOKEN }}
 
-  # Job 3: Run integration tests with coverage and upload to Codecov
+  # Job 2: Run integration tests with coverage and upload to Codecov
   integration-tests-coverage:
     runs-on: ubuntu-latest
 
@@ -95,53 +72,23 @@ jobs:
         uses: actions/checkout@v5
 
       - name: Set up pixi
-        uses: prefix-dev/setup-pixi@v0.9.3
-        with:
-          environments: default
-          activate-environment: default
-          run-install: true
-          frozen: true
-          cache: false
-          post-cleanup: false
-
-      - name: Install and setup development dependencies
-        shell: bash
-        run: pixi run dev
+        uses: ./.github/actions/setup-pixi
 
       - name: Run integration tests with coverage
         run:
-          pixi run integration-tests-coverage
-          --cov-report=xml:coverage-integration.xml
+          pixi run integration-tests-coverage --cov-report=xml:coverage-integration.xml
 
       - name: Upload integration tests coverage to Codecov
         if: ${{ !cancelled() }}
-        uses: codecov/codecov-action@v5
+        uses: ./.github/actions/upload-codecov
         with:
           name: integration-tests-job
           flags: integration
           files: ./coverage-integration.xml
-          fail_ci_if_error: true
-          verbose: true
           token: ${{ secrets.CODECOV_TOKEN }}
 
-  # Job 4: Trigger dashboard build
-  dashboard-build-trigger:
+  # Job 4: Build and publish dashboard (reusable workflow)
+  run-reusable-workflows:
     needs: [docstring-coverage, unit-tests-coverage, integration-tests-coverage] # depend on the previous jobs
-
-    runs-on: ubuntu-latest
-
-    steps:
-      - name: Check-out repository
-        uses: actions/checkout@v5
-
-      - name: Trigger dashboard build
-        uses: actions/github-script@v7
-        with:
-          github-token: ${{ secrets.GITHUB_TOKEN }}
-          script: |
-            await github.rest.actions.createWorkflowDispatch({
-              owner: context.repo.owner,
-              repo: context.repo.repo,
-              workflow_id: "dashboard.yaml",
-              ref: "${{ env.CI_BRANCH }}"
-            });
+    uses: ./.github/workflows/dashboard.yml
+    secrets: inherit
diff --git a/.github/workflows/dashboard.yaml b/.github/workflows/dashboard.yml
similarity index 66%
rename from .github/workflows/dashboard.yaml
rename to .github/workflows/dashboard.yml
index 71d64401..5159f71b 100644
--- a/.github/workflows/dashboard.yaml
+++ b/.github/workflows/dashboard.yml
@@ -4,12 +4,8 @@ on:
   workflow_dispatch:
   workflow_call:
 
-# Allow only one concurrent workflow, skipping runs queued between the run
-# in-progress and latest queued. And cancel in-progress runs.
-concurrency:
-  group:
-    ${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }}
-  cancel-in-progress: true
+permissions:
+  contents: read
 
 # Set the environment variables to be used in all jobs defined in this workflow
 env:
@@ -24,78 +20,83 @@ jobs:
     runs-on: ubuntu-latest
 
     steps:
-      # Create GitHub App token for pushing to external dashboard repo.
-      # The 'repositories' parameter is required to grant access to repos
-      # other than the one where the workflow is running.
-      - name: Create GitHub App installation token
-        id: app-token
-        uses: actions/create-github-app-token@v2
-        with:
-          app-id: ${{ vars.EASYSCIENCE_APP_ID }}
-          private-key: ${{ secrets.EASYSCIENCE_APP_KEY }}
-          repositories: |
-            ${{ github.event.repository.name }}
-            dashboard
-
       - name: Checkout repository
         uses: actions/checkout@v5
         with:
           fetch-depth: 0
 
       - name: Set up pixi
-        uses: prefix-dev/setup-pixi@v0.9.3
-        with:
-          environments: default
-          activate-environment: default
-          run-install: true
-          frozen: true
-          cache: false
-          post-cleanup: false
-
-      - name: Install and setup development dependencies
+        uses: ./.github/actions/setup-pixi
+
+      - name: Install badgery
         shell: bash
-        run: |
-          pixi run dev
-          pixi add --pypi --git https://github.com/enhantica/badgery badgery
+        run: pixi add --pypi --git https://github.com/enhantica/badgery badgery
 
       - name: Run docstring coverage and code complexity/maintainability checks
         run: |
-          for BRANCH in ${{ env.DEFAULT_BRANCH }} ${{ env.DEVELOP_BRANCH }} ${{ env.CI_BRANCH }}; do
-            echo "=== Processing branch $BRANCH ==="
+          for BRANCH in $DEFAULT_BRANCH $DEVELOP_BRANCH $CI_BRANCH; do
+            echo
+            echo "🔹🔸🔹🔸🔹 Processing branch $BRANCH 🔹🔸🔹🔸🔹"
             if [ -d "../$BRANCH" ]; then
               echo "Branch $BRANCH already processed, skipping"
               continue
             fi
+
             git worktree add ../$BRANCH origin/$BRANCH
             mkdir -p reports/$BRANCH
+
             echo "Docstring coverage for branch $BRANCH"
             pixi run interrogate -c pyproject.toml --fail-under=0 ../$BRANCH/src > reports/$BRANCH/coverage-docstring.txt
+
             echo "Cyclomatic complexity for branch $BRANCH"
             pixi run radon cc -s -j ../$BRANCH/src > reports/$BRANCH/cyclomatic-complexity.json
+
             echo "Maintainability index for branch $BRANCH"
             pixi run radon mi -j ../$BRANCH/src > reports/$BRANCH/maintainability-index.json
+
             echo "Raw metrics for branch $BRANCH"
             pixi run radon raw -s -j ../$BRANCH/src > reports/$BRANCH/raw-metrics.json
           done
 
       - name: Generate dashboard HTML
         run: >
-          pixi run python -m badgery --config .badgery.yaml --repo ${{
-          github.repository }} --branch ${{ env.CI_BRANCH }} --output index.html
+          pixi run python -m badgery --config .badgery.yaml --repo ${{ github.repository
+          }} --branch ${{ env.CI_BRANCH }} --output index.html
 
       - name: Prepare publish directory
         run: |
           mkdir -p _dashboard_publish/${{ env.REPO_NAME }}/${{ env.CI_BRANCH }}
           cp index.html _dashboard_publish/${{ env.REPO_NAME }}/${{ env.CI_BRANCH }}
 
+      # Create GitHub App token for pushing to external dashboard repo.
+      # The 'repositories' parameter is required to grant access to repos
+      # other than the one where the workflow is running.
+      - name: Setup easyscience[bot]
+        id: bot
+        uses: ./.github/actions/setup-easyscience-bot
+        with:
+          app-id: ${{ vars.EASYSCIENCE_APP_ID }}
+          private-key: ${{ secrets.EASYSCIENCE_APP_KEY }}
+          repositories: |
+            ${{ github.event.repository.name }}
+            dashboard
+
+      # Publish to external dashboard repository with retry logic.
+      # Retry is needed to handle transient GitHub API/authentication issues
+      # that occasionally cause 403 errors when multiple workflows push concurrently.
+      # Uses personal_token (not github_token) as GITHUB_TOKEN cannot access external repos.
       - name: Publish to main branch of ${{ github.repository }}
-        uses: peaceiris/actions-gh-pages@v3
+        uses: Wandalen/wretry.action@v3.8.0
         with:
-          external_repository: ${{ env.REPO_OWNER }}/dashboard
-          publish_branch: ${{ env.DEFAULT_BRANCH }}
-          personal_token: ${{ steps.app-token.outputs.token }}
-          publish_dir: ./_dashboard_publish
-          keep_files: true
+          attempt_limit: 3
+          attempt_delay: 15000 # 15 seconds between retries
+          action: peaceiris/actions-gh-pages@v4
+          with: |
+            publish_dir: ./_dashboard_publish
+            keep_files: true
+            external_repository: ${{ env.REPO_OWNER }}/dashboard
+            publish_branch: master
+            personal_token: ${{ steps.bot.outputs.token }}
 
       - name: Add dashboard link to summary
         run: |
diff --git a/.github/workflows/docs.yaml b/.github/workflows/docs.yml
similarity index 66%
rename from .github/workflows/docs.yaml
rename to .github/workflows/docs.yml
index f9bddf67..66b06e1d 100644
--- a/.github/workflows/docs.yaml
+++ b/.github/workflows/docs.yml
@@ -14,16 +14,16 @@
 name: Docs build and deployment
 
 on:
-  # Trigger the workflow on pull request
-  pull_request:
-    # Selected branches
-    branches: [master, main, develop]
   # Trigger the workflow on push
   push:
     # Selected branches
-    branches: [master, main, develop]
+    branches: [develop] # master and main are already verified in PR
     # Runs on creating a new tag starting with 'v', e.g. 'v1.0.3'
     tags: ['v*']
+  # Trigger the workflow on pull request
+  pull_request:
+    # Selected branches
+    branches: [master, main, develop]
   # Allows you to run this workflow manually from the Actions tab
   workflow_dispatch:
 
@@ -53,11 +53,7 @@ jobs:
   # Single job that builds and deploys documentation.
   # Uses macOS runner for consistent Plotly chart rendering.
   build-deploy-docs:
-    strategy:
-      matrix:
-        os: [macos-14]
-
-    runs-on: ${{ matrix.os }}
+    runs-on: ubuntu-latest # macos-latest
 
     permissions:
       contents: write # Required for pushing to the gh-pages branch
@@ -83,22 +79,11 @@ jobs:
           fi
           echo "RELEASE_VERSION=${RELEASE_VERSION}" >> "$GITHUB_ENV"
           echo "DOCS_VERSION=${DOCS_VERSION}" >> "$GITHUB_ENV"
-          echo "DEPLOYMENT_URL=https://easyscience.github.io/${{ github.event.repository.name }}/${DOCS_VERSION}" >> "$GITHUB_ENV"
-
-      # Create GitHub App token for pushing to gh-pages as easyscience[bot].
-      - name: Create GitHub App installation token
-        id: app-token
-        uses: actions/create-github-app-token@v2
-        with:
-          app-id: ${{ vars.EASYSCIENCE_APP_ID }}
-          private-key: ${{ secrets.EASYSCIENCE_APP_KEY }}
 
       # Check out the repository source code.
       # Note: The gh-pages branch is fetched separately later for mike deployment.
-      - name: Check-out repository
+      - name: Checkout repository
         uses: actions/checkout@v5
-        with:
-          token: ${{ steps.app-token.outputs.token }}
 
       # Activate dark mode to create documentation with Plotly charts in dark mode
       # Need a better solution to automatically switch the chart colour theme based on the mkdocs material switcher
@@ -114,83 +99,53 @@ jobs:
       # Set up the pixi package manager and install dependencies from pixi.toml.
       # Uses frozen lockfile to ensure reproducible builds.
       - name: Set up pixi
-        uses: prefix-dev/setup-pixi@v0.9.3
-        with:
-          environments: default
-          activate-environment: default
-          run-install: true
-          frozen: true
-          cache: false
-          post-cleanup: false
-
-      # Install additional development dependencies (e.g., pre-commit hooks, dev tools).
-      - name: Install and setup development dependencies
-        shell: bash
-        run: pixi run dev
-
-      # Clone shared documentation assets and branding resources from external repositories.
-      # These contain common MkDocs configuration, templates, stylesheets, and images.
-      - name: Clone easyscience/assets-docs and easyscience/assets-branding
-        run: |
-          cd ..
-          git clone https://github.com/easyscience/assets-docs.git
-          git clone https://github.com/easyscience/assets-branding.git
-
-      # Copy assets from the cloned repositories into the docs/ directory.
-      # This includes stylesheets, images, templates, and other shared resources.
-      - name: Add files from cloned repositories
-        run: pixi run docs-assets
-
-      # Convert Python scripts in the tutorials/ directory to Jupyter notebooks.
-      # This step also strips any existing output from the notebooks and prepares
-      # them for documentation.
-      - name: Convert tutorial scripts to notebooks
-        run: pixi run notebook-prepare
-
-      # Pre-import the main package to trigger Matplotlib font cache building.
-      # This avoids "Matplotlib is building the font cache" messages during notebook execution.
+        uses: ./.github/actions/setup-pixi
+      # Pre-import the main package to exclude info messages from the docs
+      # E.g., Matplotlib may print messages to stdout/stderr when first
+      # imported. This step allows to avoid "Matplotlib is building the font
+      # cache" messages during notebook execution.
       - name: Pre-build site step
         run: pixi run python -c "import easydiffraction"
 
+      # Prepare the Jupyter notebooks for documentation (strip output, etc.).
+      - name: Prepare notebooks
+        run: pixi run notebook-prepare
+
       # Execute all Jupyter notebooks to generate output cells (plots, tables, etc.).
       # Uses multiple cores for parallel execution to speed up the process.
       - name: Run notebooks
-        #  if: false # Temporarily disabled to speed up the docs build
+        # if: false # Temporarily disabled to speed up the docs build
         run: pixi run notebook-exec
 
-      # Move the executed notebooks to docs/tutorials/ directory
-      # so they can be included in the documentation site.
-      - name: Move notebooks to docs/tutorials
-        run: pixi run docs-notebooks
-
-      # Create the mkdocs.yml configuration file
-      # The file is created by merging two files:
-      # - assets-docs/mkdocs.yml - the common configuration (theme, plugins, etc.)
-      # - docs/mkdocs.yml - the project-specific configuration (project name, TOC, etc.)
-      - name: Create mkdocs.yml file
-        run: pixi run docs-config
-
       # Build the static files for the documentation site for local inspection
       # Input: docs/ directory containing the Markdown files
       # Output: site/ directory containing the generated HTML files
       - name: Build site for local check
-        run: pixi run docs-local
+        run: pixi run docs-build-local
 
       # Upload the static files from the site/ directory to be used for
       # local check
       - name: Upload built site as artifact
-        uses: actions/upload-artifact@v4
+        uses: ./.github/actions/upload-artifact
+        with:
+          name: site-local_easydiffraction-lib-${{ env.RELEASE_VERSION }}
+          path: docs/site/
+
+      # Create GitHub App token for pushing to gh-pages as easyscience[bot].
+      - name: Setup easyscience[bot]
+        id: bot
+        uses: ./.github/actions/setup-easyscience-bot
         with:
-          name: site-local_edl-${{ env.RELEASE_VERSION }}
-          path: site/
-          if-no-files-found: 'error'
-          compression-level: 0
+          app-id: ${{ vars.EASYSCIENCE_APP_ID }}
+          private-key: ${{ secrets.EASYSCIENCE_APP_KEY }}
 
-      # Configure git user for mike to commit and push to gh-pages branch.
+      # Configure git identity and remote URL so mike pushes as easyscience[bot].
       - name: Configure git for pushing
         run: |
+          set -euo pipefail
           git config user.name "easyscience[bot]"
           git config user.email "${{ vars.EASYSCIENCE_APP_ID }}+easyscience[bot]@users.noreply.github.com"
+          git remote set-url origin "https://x-access-token:${{ steps.bot.outputs.token }}@github.com/${{ github.repository }}.git"
 
       # Fetch the gh-pages branch to ensure mike has the latest remote state.
       # This is required because the checkout step only fetches the source branch,
@@ -206,10 +161,24 @@ jobs:
       # Also sets 'latest' as the default version for the version selector.
       - name: Rebuild and deploy docs with mike
         run: |
+          # Exit on error (-e), undefined vars (-u), and pipeline failures (pipefail)
+          set -euo pipefail
+
+          REPO_NAME="${{ github.event.repository.name }}"
+          BASE_URL="https://easyscience.github.io/${REPO_NAME}"
+
+          # Deploy the release version and update the "latest" alias
           if [[ "${IS_RELEASE_TAG}" == "true" ]]; then
-            pixi run docs-deploy "${RELEASE_VERSION#v}" latest
+            pixi run docs-deploy-pre "${RELEASE_VERSION#v}" latest
+            pixi run docs-set-default-pre latest
+            DEPLOYMENT_URL="${BASE_URL}/latest"
+
+          # Deploy/update the "dev" alias (or whatever your convention is)
           else
-            pixi run docs-deploy dev
+            pixi run docs-deploy-pre dev
+            DEPLOYMENT_URL="${BASE_URL}/dev"
+
           fi
-          pixi run docs-set-default latest
-          echo "🔗 deployment url [${{ env.DEPLOYMENT_URL }}](${{ env.DEPLOYMENT_URL }})" >> $GITHUB_STEP_SUMMARY
+
+          # Add links to the action summary page for easy access
+          echo "🔗 deployment url [${DEPLOYMENT_URL}](${DEPLOYMENT_URL})" >> "${GITHUB_STEP_SUMMARY}"
diff --git a/.github/workflows/issues-labels.yml b/.github/workflows/issues-labels.yml
new file mode 100644
index 00000000..3a60cdd7
--- /dev/null
+++ b/.github/workflows/issues-labels.yml
@@ -0,0 +1,42 @@
+# Verifies if an issue has at least one of the `[scope]` and one of the
+# `[priority]` labels. If not, the bot adds labels with a warning emoji
+# to indicate that those labels need to be added.
+
+name: Issue labels check
+
+on:
+  issues:
+    types: [opened, labeled, unlabeled]
+
+permissions:
+  issues: write
+
+jobs:
+  check-labels:
+    runs-on: ubuntu-latest
+
+    steps:
+      - name: Setup easyscience[bot]
+        id: bot
+        uses: ./.github/actions/setup-easyscience-bot
+        with:
+          app-id: ${{ vars.EASYSCIENCE_APP_ID }}
+          private-key: ${{ secrets.EASYSCIENCE_APP_KEY }}
+
+      - name: Check for required [scope] label
+        uses: trstringer/require-label-prefix@v1
+        with:
+          secret: ${{ steps.bot.outputs.token }}
+          prefix: '[scope]'
+          labelSeparator: ' '
+          addLabel: true
+          defaultLabel: '[scope] ⚠️ label needed'
+
+      - name: Check for required [priority] label
+        uses: trstringer/require-label-prefix@v1
+        with:
+          secret: ${{ steps.bot.outputs.token }}
+          prefix: '[priority]'
+          labelSeparator: ' '
+          addLabel: true
+          defaultLabel: '[priority] ⚠️ label needed'
diff --git a/.github/workflows/lint-format.yml b/.github/workflows/lint-format.yml
new file mode 100644
index 00000000..f1135fa5
--- /dev/null
+++ b/.github/workflows/lint-format.yml
@@ -0,0 +1,124 @@
+# The workflow checks
+#  - the validity of pyproject.toml,
+#  - the presence and correctness of SPDX license headers,
+#  - linting and formatting of Python code,
+#  - linting and formatting of docstrings in Python code,
+#  - formatting of non-Python files (like markdown and toml).
+#  - linting of Python code in Jupyter notebooks (for library template).
+#
+# A summary of the checks is added to the GitHub Actions summary.
+
+name: Lint and format checks
+
+on:
+  # Trigger the workflow on push
+  push:
+    branches-ignore: [master, main] # Already verified in PR
+    # Do not run this workflow on creating a new tag starting with
+    # 'v', e.g. 'v1.0.3' (see publish-pypi.yml)
+    tags-ignore: ['v*']
+  # Trigger the workflow on pull request
+  pull_request:
+  # Allows you to run this workflow manually from the Actions tab
+  workflow_dispatch:
+
+# Allow only one concurrent workflow, skipping runs queued between the run
+# in-progress and latest queued. And cancel in-progress runs.
+concurrency:
+  group: ${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }}
+  cancel-in-progress: true
+
+permissions:
+  contents: read
+
+# Set the environment variables to be used in all jobs defined in this workflow
+env:
+  CI_BRANCH: ${{ github.head_ref || github.ref_name }}
+
+jobs:
+  lint-format:
+    runs-on: ubuntu-latest
+
+    steps:
+      - name: Checkout repository
+        uses: actions/checkout@v5
+
+      - name: Set up pixi
+        uses: ./.github/actions/setup-pixi
+
+      - name: Run post-install developer steps
+        run: pixi run post-install
+
+      - name: Check validity of pyproject.toml
+        id: pyproject
+        continue-on-error: true
+        shell: bash
+        run: pixi run pyproject-check
+
+      - name: Check SPDX license headers
+        id: license_headers
+        continue-on-error: true
+        shell: bash
+        run: pixi run license-check
+
+      - name: Check linting of Python code
+        id: py_lint
+        continue-on-error: true
+        shell: bash
+        run: pixi run py-lint-check
+
+      - name: Check formatting of Python code
+        id: py_format
+        continue-on-error: true
+        shell: bash
+        run: pixi run py-format-check
+
+      - name: Check linting of docstrings in Python code
+        id: docstring_lint
+        continue-on-error: true
+        shell: bash
+        run: pixi run docstring-lint-check
+
+      - name: Check formatting of non-Python files (md, toml, etc.)
+        id: nonpy_format
+        continue-on-error: true
+        shell: bash
+        run: pixi run nonpy-format-check
+
+      - name: Check linting of Python code in Jupyter notebooks (ipynb)
+        id: notebook_lint
+        continue-on-error: true
+        shell: bash
+        run: pixi run notebook-lint-check
+
+      # Add summary
+      - name: Add quality checks summary
+        if: always()
+        shell: bash
+        run: |
+          {
+            echo "## 🧪 Checks Summary"
+            echo ""
+            echo "| Check | Status |"
+            echo "|-------|--------|"
+            echo "| pyproject.toml   | ${{ steps.pyproject.outcome == 'success' && '✅' || '❌' }} |"
+            echo "| license headers  | ${{ steps.license_headers.outcome == 'success' && '✅'  || '❌' }} |"
+            echo "| py lint          | ${{ steps.py_lint.outcome == 'success' && '✅' || '❌' }} |"
+            echo "| py format        | ${{ steps.py_format.outcome == 'success' && '✅' || '❌' }} |"
+            echo "| docstring lint   | ${{ steps.docstring_lint.outcome == 'success' && '✅' || '❌' }} |"
+            echo "| nonpy format     | ${{ steps.nonpy_format.outcome == 'success' && '✅' || '❌' }} |"
+            echo "| notebooks lint   | ${{ steps.notebook_lint.outcome == 'success' && '✅' || '❌' }} |"
+          } >> "$GITHUB_STEP_SUMMARY"
+
+      # Fail job if any check failed
+      - name: Fail job if any check failed
+        if: |
+          steps.pyproject.outcome == 'failure'
+          || steps.license_headers.outcome == 'failure'
+          || steps.py_lint.outcome == 'failure'
+          || steps.py_format.outcome == 'failure'
+          || steps.docstring_lint.outcome == 'failure'
+          || steps.nonpy_format.outcome == 'failure'
+          || steps.notebook_lint.outcome == 'failure'
+        shell: bash
+        run: exit 1
diff --git a/.github/workflows/labels.yaml b/.github/workflows/pr-labels.yml
similarity index 70%
rename from .github/workflows/labels.yaml
rename to .github/workflows/pr-labels.yml
index 1e8bd846..642cd318 100644
--- a/.github/workflows/labels.yaml
+++ b/.github/workflows/pr-labels.yml
@@ -1,7 +1,16 @@
 # Verifies if a pull request has at least one label from a set of valid
 # labels before it can be merged.
+#
+# NOTE:
+# This workflow may be triggered twice in quick succession when a PR is
+# created:
+#   1) `opened`  — when the pull request is initially created
+#   2) `labeled` — if labels are added immediately after creation
+# (e.g. by manual labeling, another workflow, or GitHub App).
+#
+# These are separate GitHub events, so two workflow runs can be started.
 
-name: PR label checks
+name: PR labels check
 
 on:
   pull_request_target:
@@ -11,15 +20,17 @@ permissions:
   pull-requests: read
 
 jobs:
-  require-label:
+  check-labels:
     runs-on: ubuntu-latest
+
     steps:
-      - name: Validate required labels
+      - name: Check for valid labels
         run: |
           PR_LABELS=$(echo '${{ toJson(github.event.pull_request.labels.*.name) }}' | jq -r '.[]')
+
           echo "Current PR labels: $PR_LABELS"
           VALID_LABELS=(
-            "[maintainer] auto-pull-request"
+            "[bot] release"
             "[scope] bug"
             "[scope] documentation"
             "[scope] enhancement"
diff --git a/.github/workflows/pypi-publish.yaml b/.github/workflows/pypi-publish.yaml
deleted file mode 100644
index 7767f8d2..00000000
--- a/.github/workflows/pypi-publish.yaml
+++ /dev/null
@@ -1,43 +0,0 @@
-# Builds a Python package and publish it to PyPI when a new tag is
-# created.
-
-name: PyPI publishing
-
-on:
-  # Runs on creating a new tag starting with 'v', e.g. 'v1.0.3'
-  push:
-    tags: ['v*']
-  # Allows you to run this workflow manually from the Actions tab
-  workflow_dispatch:
-
-jobs:
-  pypi-publish:
-    runs-on: ubuntu-latest
-
-    steps:
-      - name: Check-out repository
-        uses: actions/checkout@v5
-        with:
-          fetch-depth: '0' # full history with tags to get the version number by versioningit
-
-      - name: Set up pixi
-        uses: prefix-dev/setup-pixi@v0.9.3
-        with:
-          environments: default
-          activate-environment: default
-          run-install: true
-          frozen: true
-          cache: false
-          post-cleanup: false
-
-      - name: Install and setup development dependencies
-        shell: bash
-        run: pixi run dev
-
-      - name: Create Python package
-        run: pixi run python -m build
-
-      - name: Publish distribution 📦 to PyPI
-        uses: pypa/gh-action-pypi-publish@release/v1
-        with:
-          password: ${{ secrets.PYPI_PASSWORD }}
diff --git a/.github/workflows/pypi-publish.yml b/.github/workflows/pypi-publish.yml
new file mode 100644
index 00000000..e9986cac
--- /dev/null
+++ b/.github/workflows/pypi-publish.yml
@@ -0,0 +1,46 @@
+# Builds a Python package and publish it to PyPI when a new tag is
+# created.
+
+name: PyPI publishing
+
+on:
+  # Runs on creating a new tag starting with 'v', e.g. 'v1.0.3'
+  push:
+    tags: ['v*']
+  # Allows you to run this workflow manually from the Actions tab
+  workflow_dispatch:
+
+jobs:
+  pypi-publish:
+    runs-on: ubuntu-latest
+
+    permissions:
+      contents: read
+      id-token: write # IMPORTANT: this permission is mandatory for trusted publishing
+
+    steps:
+      - name: Check-out repository
+        uses: actions/checkout@v5
+        with:
+          fetch-depth: 0 # full history with tags to get the version number by versioningit
+
+      - name: Set up pixi
+        uses: ./.github/actions/setup-pixi
+
+      # Build the Python package (to dist/ folder)
+      - name: Create Python package
+        run: pixi run default-build
+
+      # Publish the package to PyPI (from dist/ folder)
+      # Instead of publishing with personal access token, we use
+      # GitHub Actions OIDC to get a short-lived token from PyPI.
+      # New publisher must be previously configured in PyPI at
+      # https://pypi.org/manage/project/easydiffraction/settings/publishing/
+      # Use the following data:
+      # Owner: easyscience
+      # Repository name: diffraction-lib
+      # Workflow name: pypi-publish.yml
+      - name: Publish to PyPI
+        uses: pypa/gh-action-pypi-publish@release/v1
+        with:
+          packages-dir: 'dist'
diff --git a/.github/workflows/pypi-test.yaml b/.github/workflows/pypi-test.yaml
deleted file mode 100644
index e083846e..00000000
--- a/.github/workflows/pypi-test.yaml
+++ /dev/null
@@ -1,97 +0,0 @@
-name: PyPI package tests
-
-on:
-  # Run daily, at 00:00.
-  schedule:
-    - cron: '0 0 * * *'
-  # Allows you to run this workflow manually from the Actions tab
-  workflow_dispatch:
-
-# Allow only one concurrent workflow, skipping runs queued between the run
-# in-progress and latest queued. And cancel in-progress runs.
-concurrency:
-  group:
-    ${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }}
-  cancel-in-progress: true
-
-# Set the environment variables to be used in all jobs defined in this workflow
-env:
-  CI_BRANCH: ${{ github.head_ref || github.ref_name }}
-  DEFAULT_BRANCH: ${{ github.event.repository.default_branch }}
-
-jobs:
-  # Job 1: Test installation from PyPI on multiple OS
-  pypi-package-tests:
-    strategy:
-      matrix:
-        os: [ubuntu-latest, windows-latest, macos-latest]
-
-    runs-on: ${{ matrix.os }}
-
-    steps:
-      - name: Set up pixi
-        uses: prefix-dev/setup-pixi@v0.9.3
-        with:
-          run-install: false
-          cache: false
-          post-cleanup: false
-
-      - name:
-          Download the pixi configuration file from the ${{ env.CI_BRANCH}}
-          branch
-        shell: bash
-        run: |
-          curl -LO https://raw.githubusercontent.com/easyscience/diffraction-lib/${CI_BRANCH}/pixi.toml
-
-      - name: Download the tests from the ${{ env.DEFAULT_BRANCH }} branch
-        shell: bash
-        run: |
-          curl -LO https://github.com/easyscience/diffraction-lib/archive/refs/heads/${DEFAULT_BRANCH}.zip
-          unzip ${DEFAULT_BRANCH}.zip -d .
-          mkdir -p tests
-          cp -r diffraction-lib-${DEFAULT_BRANCH}/tests/* tests/
-          cp diffraction-lib-${DEFAULT_BRANCH}/pytest.ini .
-          rm -rf ${DEFAULT_BRANCH}.zip diffraction-lib-${DEFAULT_BRANCH}
-
-      - name: Create the environment and install dependencies
-        run: pixi install
-
-      - name: Run unit tests to verify the installation
-        run: pixi run unit-tests
-
-      - name: Run integration tests to verify the installation
-        run: pixi run integration-tests
-
-      # Github token to avoid hitting the unauthenticated API rate limit
-      - name: List and fetch the EasyDiffraction tutorials
-        env:
-          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
-        run: |
-          pixi run easydiffraction --version
-          pixi run easydiffraction list-tutorials
-          pixi run easydiffraction download-all-tutorials
-
-      - name: Test tutorials as notebooks
-        run: pixi run notebook-tests
-
-  # Job 2: Trigger dashboard build
-  dashboard-build-trigger:
-    needs: pypi-package-tests
-
-    runs-on: ubuntu-latest
-
-    steps:
-      - name: Check-out repository
-        uses: actions/checkout@v5
-
-      - name: Trigger dashboard build
-        uses: actions/github-script@v7
-        with:
-          github-token: ${{ secrets.GITHUB_TOKEN }}
-          script: |
-            await github.rest.actions.createWorkflowDispatch({
-              owner: context.repo.owner,
-              repo: context.repo.repo,
-              workflow_id: "dashboard.yaml",
-              ref: "${{ env.CI_BRANCH }}"
-            });
diff --git a/.github/workflows/pypi-test.yml b/.github/workflows/pypi-test.yml
new file mode 100644
index 00000000..6493e64f
--- /dev/null
+++ b/.github/workflows/pypi-test.yml
@@ -0,0 +1,80 @@
+name: PyPI package tests
+
+on:
+  # Run daily, at 00:00.
+  schedule:
+    - cron: '0 0 * * *'
+  # Allows you to run this workflow manually from the Actions tab
+  workflow_dispatch:
+
+# Allow only one concurrent workflow, skipping runs queued between the run
+# in-progress and latest queued. And cancel in-progress runs.
+concurrency:
+  group: ${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }}
+  cancel-in-progress: true
+
+permissions:
+  contents: read
+
+# Set the environment variables to be used in all jobs defined in this workflow
+env:
+  CI_BRANCH: ${{ github.head_ref || github.ref_name }}
+  DEFAULT_BRANCH: ${{ github.event.repository.default_branch }}
+
+jobs:
+  # Job 1: Test installation from PyPI on multiple OS
+  pypi-package-tests:
+    strategy:
+      matrix:
+        os: [ubuntu-latest, windows-latest, macos-latest]
+
+    runs-on: ${{ matrix.os }}
+
+    steps:
+      - name: Checkout repository
+        uses: actions/checkout@v5
+
+      - name: Set up pixi
+        uses: ./.github/actions/setup-pixi
+        with:
+          environments: ''
+          activate-environment: ''
+          run-install: false
+          frozen: false
+
+      - name: Init pixi project
+        run: pixi init easydiffraction
+
+      - name: Add Python 3.13 from Conda
+        working-directory: easydiffraction
+        run: pixi add "python=3.13"
+
+      - name: Add other Conda dependencies
+        working-directory: easydiffraction
+        run: pixi add gsl
+
+      - name: Add easydiffraction from PyPI
+        working-directory: easydiffraction
+        run: pixi add --pypi "easydiffraction"
+
+      - name: Add dev dependencies from PyPI
+        working-directory: easydiffraction
+        run: pixi add --pypi pytest pytest-xdist
+
+      - name: Add Pixi task as a shortcut
+        working-directory: easydiffraction
+        run: pixi task add easydiffraction "python -m easydiffraction"
+
+      - name: Run unit tests to verify the installation
+        working-directory: easydiffraction
+        run: pixi run python -m pytest ../tests/unit/ --color=yes -v
+
+      - name: Run integration tests to verify the installation
+        working-directory: easydiffraction
+        run: pixi run python -m pytest ../tests/integration/ --color=yes -n auto
+
+  # Job 2: Build and publish dashboard (reusable workflow)
+  run-reusable-workflows:
+    needs: pypi-package-tests # depend on previous job
+    uses: ./.github/workflows/dashboard.yml
+    secrets: inherit
diff --git a/.github/workflows/quality.yaml b/.github/workflows/quality.yaml
deleted file mode 100644
index a3c1b72a..00000000
--- a/.github/workflows/quality.yaml
+++ /dev/null
@@ -1,123 +0,0 @@
-# The workflow is divided into several steps to ensure code quality:
-#    - Check the validity of pyproject.toml
-#    - Check code linting
-#    - Check code formatting
-#    - Check formatting of docstrings in the code
-#    - Check formatting of Markdown, YAML, TOML, etc. files
-
-name: Code quality checks
-
-on:
-  # Trigger the workflow on push
-  push:
-    # Every branch
-    branches: ['**']
-    # Do not run this workflow on creating a new tag starting with
-    # 'v', e.g. 'v1.0.3' (see publish-pypi.yml)
-    tags-ignore: ['v*']
-  # Trigger the workflow on pull request
-  pull_request:
-  # Allows you to run this workflow manually from the Actions tab
-  workflow_dispatch:
-
-# Allow only one concurrent workflow, skipping runs queued between the run
-# in-progress and latest queued. And cancel in-progress runs.
-concurrency:
-  group:
-    ${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }}
-  cancel-in-progress: true
-
-# Set the environment variables to be used in all jobs defined in this workflow
-env:
-  CI_BRANCH: ${{ github.head_ref || github.ref_name }}
-
-jobs:
-  code-quality:
-    runs-on: ubuntu-latest
-
-    steps:
-      - name: Checkout repository
-        uses: actions/checkout@v5
-
-      - name: Set up pixi
-        uses: prefix-dev/setup-pixi@v0.9.3
-        with:
-          environments: default
-          activate-environment: default
-          run-install: true
-          frozen: true
-          cache: false
-          post-cleanup: false
-
-      - name: Install and setup development dependencies
-        shell: bash
-        run: pixi run dev
-
-      # Check the validity of pyproject.toml
-      - name: Check validity of pyproject.toml
-        id: check_pyproject
-        continue-on-error: true
-        shell: bash
-        run: pixi run pyproject-check
-
-      # Check code linting with Ruff in the project root
-      - name: Check code linting
-        id: check_code_linting
-        continue-on-error: true
-        shell: bash
-        run: pixi run py-lint-check
-
-      # Check code formatting with Ruff in the project root
-      - name: Check code formatting
-        id: check_code_formatting
-        continue-on-error: true
-        shell: bash
-        run: pixi run py-format-check
-
-      # Check formatting of docstrings in the code with docformatter
-      - name: Check formatting of docstrings in the code
-        id: check_docs_formatting
-        continue-on-error: true
-        shell: bash
-        run: pixi run docs-format-check
-
-      # Check formatting of MD, YAML, TOML, etc. files with Prettier in
-      # the project root
-      - name: Check formatting of MD, YAML, TOML, etc. files
-        id: check_others_formatting
-        continue-on-error: true
-        shell: bash
-        run: pixi run nonpy-format-check
-
-      # Check formatting of Jupyter Notebooks in the tutorials folder
-      - name: Convert tutorial scripts to notebooks and check formatting
-        id: check_notebooks_formatting
-        continue-on-error: true
-        shell: bash
-        run: |
-          pixi run notebook-prepare
-          pixi run notebook-format-check
-
-      # Add summary
-      - name: Add quality checks summary
-        if: always()
-        shell: bash
-        run: |
-          {
-            echo "## 🧪 Code Quality Checks Summary"
-            echo ""
-            echo "| Check | Status |"
-            echo "|-------|--------|"
-            echo "| pyproject.toml   | ${{ steps.check_pyproject.outcome == 'success' && '✅' || '❌' }} |"
-            echo "| py lint          | ${{ steps.check_code_linting.outcome == 'success' && '✅' || '❌' }} |"
-            echo "| py format        | ${{ steps.check_code_formatting.outcome == 'success' && '✅' || '❌' }} |"
-            echo "| docstring format | ${{ steps.check_docs_formatting.outcome == 'success' && '✅' || '❌' }} |"
-            echo "| nonpy format     | ${{ steps.check_others_formatting.outcome == 'success' && '✅' || '❌' }} |"
-            echo "| notebooks format | ${{ steps.check_notebooks_formatting.outcome == 'success' && '✅' || '❌' }} |"
-          } >> "$GITHUB_STEP_SUMMARY"
-
-      # Fail job requirement
-      - name: Fail job if any check failed
-        if: failure()
-        shell: bash
-        run: exit 1
diff --git a/.github/workflows/release-notes.yaml b/.github/workflows/release-notes.yml
similarity index 81%
rename from .github/workflows/release-notes.yaml
rename to .github/workflows/release-notes.yml
index 73006ff2..cb3e28d6 100644
--- a/.github/workflows/release-notes.yaml
+++ b/.github/workflows/release-notes.yml
@@ -25,18 +25,14 @@ jobs:
           fetch-depth: 0 # full history with tags to get the version number
 
       - name: Set up pixi
-        uses: prefix-dev/setup-pixi@v0.9.3
-        with:
-          environments: default
-          activate-environment: default
-          run-install: true
-          frozen: true
-          cache: false
-          post-cleanup: false
+        uses: ./.github/actions/setup-pixi
 
-      - name: Install and setup development dependencies
-        shell: bash
-        run: pixi run dev
+      - name: Setup easyscience[bot]
+        id: bot
+        uses: ./.github/actions/setup-easyscience-bot
+        with:
+          app-id: ${{ vars.EASYSCIENCE_APP_ID }}
+          private-key: ${{ secrets.EASYSCIENCE_APP_KEY }}
 
       - name: Drafts the next release notes
         id: draft
@@ -61,9 +57,8 @@ jobs:
                 labels: ['[scope] bug']
               - title: 'Changed'
                 labels: ['[scope] maintenance', '[scope] documentation']
-
         env:
-          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+          GITHUB_TOKEN: ${{ steps.bot.outputs.token }}
 
       - name: Create GitHub draft release
         uses: softprops/action-gh-release@v2
@@ -73,4 +68,4 @@ jobs:
           name: ${{ steps.draft.outputs.release_name }}
           body: ${{ steps.draft.outputs.release_notes }}
         env:
-          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+          GITHUB_TOKEN: ${{ steps.bot.outputs.token }}
diff --git a/.github/workflows/release-pr.yaml b/.github/workflows/release-pr.yaml
deleted file mode 100644
index eda67884..00000000
--- a/.github/workflows/release-pr.yaml
+++ /dev/null
@@ -1,57 +0,0 @@
-# This workflow creates an automated release PR from `develop` into `master`.
-#
-# Usage:
-#   - Triggered manually via workflow_dispatch.
-#   - Creates a PR titled "Release: merge develop into master".
-#   - Adds the label "[maintainer] auto-pull-request" so it is excluded from changelogs.
-#   - The PR body makes clear that this is automation only (no review needed).
-#
-# Required repo config:
-# https://github.com/organizations/easyscience/settings/secrets/actions
-# https://github.com/organizations/easyscience/settings/variables/actions
-# - Actions secret:   EASYSCIENCE_APP_KEY  (GitHub App private key PEM)
-# - Actions variable: EASYSCIENCE_APP_ID   (GitHub App ID)
-
-name: Release PR (develop -> master)
-
-on:
-  # Allows you to run this workflow manually from the Actions tab
-  workflow_dispatch:
-
-permissions:
-  contents: read
-  pull-requests: write
-
-# Set the environment variables to be used in all jobs defined in this workflow
-env:
-  DEFAULT_BRANCH: ${{ github.event.repository.default_branch }}
-
-jobs:
-  create-pull-request:
-    runs-on: ubuntu-latest
-    steps:
-      - name: Create GitHub App installation token
-        id: app-token
-        uses: actions/create-github-app-token@v2
-        with:
-          app-id: ${{ vars.EASYSCIENCE_APP_ID }}
-          private-key: ${{ secrets.EASYSCIENCE_APP_KEY }}
-
-      - name: Checkout develop branch
-        uses: actions/checkout@v5
-        with:
-          ref: develop
-          token: ${{ steps.app-token.outputs.token }}
-
-      - name: Create PR from develop to ${{ env.DEFAULT_BRANCH }}
-        run: |
-          gh pr create \
-            --base ${{ env.DEFAULT_BRANCH }} \
-            --head develop \
-            --title "Release: merge develop into ${{ env.DEFAULT_BRANCH }}" \
-            --label "[maintainer] auto-pull-request" \
-            --body "This PR is created automatically to trigger the release pipeline. It merges the accumulated changes from \`develop\` into \`${{ env.DEFAULT_BRANCH }}\`.
-
-            It is labeled \`[maintainer] auto-pull-request\` and is excluded from release notes and version bump logic."
-        env:
-          GH_TOKEN: ${{ steps.app-token.outputs.token }}
diff --git a/.github/workflows/release-pr.yml b/.github/workflows/release-pr.yml
new file mode 100644
index 00000000..7e6fda49
--- /dev/null
+++ b/.github/workflows/release-pr.yml
@@ -0,0 +1,55 @@
+# This workflow creates an automated release PR from a source branch into the default branch.
+#
+# Usage:
+#   - Triggered manually via workflow_dispatch.
+#   - Creates a PR titled "Release: merge <source> into <default>".
+#   - Adds the label "[bot] release" so it is excluded from changelogs.
+#   - The PR body makes clear that this is automation only (no review needed).
+
+name: 'Release PR (develop → master)'
+
+on:
+  workflow_dispatch:
+    inputs:
+      source_branch:
+        description: 'Source branch to create PR from'
+        required: false
+        default: 'develop'
+        type: string
+
+permissions:
+  contents: read
+  pull-requests: write
+
+env:
+  DEFAULT_BRANCH: ${{ github.event.repository.default_branch }}
+  SOURCE_BRANCH: ${{ inputs.source_branch || 'develop' }}
+
+jobs:
+  create-pull-request:
+    runs-on: ubuntu-latest
+    steps:
+      - name: Checkout ${{ env.SOURCE_BRANCH }} branch
+        uses: actions/checkout@v5
+        with:
+          ref: ${{ env.SOURCE_BRANCH }}
+
+      - name: Setup easyscience[bot]
+        id: bot
+        uses: ./.github/actions/setup-easyscience-bot
+        with:
+          app-id: ${{ vars.EASYSCIENCE_APP_ID }}
+          private-key: ${{ secrets.EASYSCIENCE_APP_KEY }}
+
+      - name: Create PR from ${{ env.SOURCE_BRANCH }} to ${{ env.DEFAULT_BRANCH }}
+        env:
+          GH_TOKEN: ${{ steps.bot.outputs.token }}
+        run: |
+          gh pr create \
+            --base ${{ env.DEFAULT_BRANCH }} \
+            --head ${{ env.SOURCE_BRANCH }} \
+            --title "Release: merge ${{ env.SOURCE_BRANCH }} into ${{ env.DEFAULT_BRANCH }}" \
+            --label "[bot] release" \
+            --body "This PR is created automatically to trigger the release pipeline. It merges the accumulated changes from \`${{ env.SOURCE_BRANCH }}\` into \`${{ env.DEFAULT_BRANCH }}\`.
+
+            ⚠️ It is labeled \`[bot] release\` and is excluded from release notes and version bump logic."
diff --git a/.github/workflows/security.yaml b/.github/workflows/security.yaml
deleted file mode 100644
index b837b879..00000000
--- a/.github/workflows/security.yaml
+++ /dev/null
@@ -1,39 +0,0 @@
-# Integrates a collection of open source static analysis tools with
-# GitHub code scanning.
-# https://github.com/github/ossar-action
-
-name: Security scans
-
-on:
-  # Trigger the workflow on pull request
-  pull_request:
-  # Allows you to run this workflow manually from the Actions tab
-  workflow_dispatch:
-
-jobs:
-  scan-security-ossar:
-    # OSSAR runs on windows-latest.
-    # ubuntu-latest and macos-latest support coming soon
-    runs-on: windows-latest
-
-    steps:
-      - name: Checkout repository
-        uses: actions/checkout@v5
-        with:
-          # We must fetch at least the immediate parents so that if this is
-          # a pull request then we can checkout the head.
-          fetch-depth: 2
-
-      # If this run was triggered by a pull request event, then checkout
-      # the head of the pull request instead of the merge commit.
-      - run: git checkout HEAD^2
-        if: ${{ github.event_name == 'pull_request' }}
-
-      - name: Run open source static analysis tools
-        uses: github/ossar-action@main
-        id: ossar
-
-      - name: Upload results to Security tab
-        uses: github/codeql-action/upload-sarif@v3
-        with:
-          sarif_file: ${{ steps.ossar.outputs.sarifFile }}
diff --git a/.github/workflows/security.yml b/.github/workflows/security.yml
new file mode 100644
index 00000000..9b34cccf
--- /dev/null
+++ b/.github/workflows/security.yml
@@ -0,0 +1,93 @@
+# Code scanning (CodeQL) for vulnerabilities and insecure coding patterns.
+#
+# What this workflow does
+# - Runs GitHub CodeQL analysis and uploads results to your repository's Security tab.
+# - Triggers on PRs (so findings appear as PR checks) and on pushes to `develop`.
+# - Runs on a weekly schedule.
+#
+# Where to find results on GitHub
+# - Repository → Security → Code scanning alerts
+#   (You can filter by tool = CodeQL and by branch.)
+#
+# Where to configure on GitHub
+# - Repository → Settings → Advanced Security
+#   Enable "GitHub Advanced Security" (if available) and configure CodeQL there.
+# - Repository → Security → Code scanning alerts
+#   This page shows findings produced by this workflow.
+#
+# Notes about the scheduled run
+# - Scheduled workflows are triggered from the repository's *default branch*.
+#   If your default branch is `master` but you want the scheduled scan to analyze
+#   `develop`, this workflow checks out `develop` explicitly for scheduled runs.
+#
+# References
+# - CodeQL Action: https://github.com/github/codeql-action
+# - Advanced setup docs: https://docs.github.com/en/code-security/code-scanning
+
+name: Security scans with CodeQL
+
+on:
+  # Run on pull requests so results show up as PR checks and code
+  # scanning alerts.
+  pull_request:
+    branches: [master, main, develop]
+
+  # Run on pushes (e.g., after merging PRs).
+  push:
+    branches: [master, main, develop]
+
+  # Run weekly. (Cron is in UTC.)
+  schedule:
+    - cron: '0 3 * * 1'
+
+permissions:
+  contents: read
+  security-events: write
+
+jobs:
+  codeql:
+    name: Code scanning
+    runs-on: ubuntu-latest
+
+    strategy:
+      fail-fast: false
+      matrix:
+        # Keep this list tight to avoid noise and speed up runs.
+        language: [python, actions]
+
+    steps:
+      # Scheduled workflows run from the default branch.
+      # We explicitly analyze `develop` on the schedule to keep the scan
+      # focused on the active dev branch.
+      - name: Checkout repository (scheduled → develop)
+        if: ${{ github.event_name == 'schedule' }}
+        uses: actions/checkout@v5
+        with:
+          ref: develop
+
+      - name: Checkout repository
+        if: ${{ github.event_name != 'schedule' }}
+        uses: actions/checkout@v5
+
+      - name: Initialize CodeQL
+        uses: github/codeql-action/init@v4
+        with:
+          languages: ${{ matrix.language }}
+
+      - name: Perform CodeQL Analysis
+        uses: github/codeql-action/analyze@v4
+
+  print-link:
+    name: Print results link
+    runs-on: ubuntu-latest
+
+    needs: codeql
+    permissions: {} # no special perms needed just to print links
+
+    steps:
+      - name: Add Code Scanning link to job summary
+        run: |
+          echo "## 🔎 CodeQL Results" >> $GITHUB_STEP_SUMMARY
+          echo "" >> $GITHUB_STEP_SUMMARY
+          echo "View Code Scanning alerts here:" >> $GITHUB_STEP_SUMMARY
+          echo "${{ github.server_url }}/${{ github.repository }}/security/code-scanning" >> $GITHUB_STEP_SUMMARY
diff --git a/.github/workflows/test-trigger.yaml b/.github/workflows/test-trigger.yml
similarity index 61%
rename from .github/workflows/test-trigger.yaml
rename to .github/workflows/test-trigger.yml
index dedfbd91..ecf6b40c 100644
--- a/.github/workflows/test-trigger.yaml
+++ b/.github/workflows/test-trigger.yml
@@ -7,6 +7,9 @@ on:
   # Allows you to run this workflow manually from the Actions tab
   workflow_dispatch:
 
+permissions:
+  contents: read
+
 jobs:
   code-tests-trigger:
     runs-on: ubuntu-latest
@@ -17,14 +20,21 @@ jobs:
         with:
           ref: develop
 
+      - name: Setup easyscience[bot]
+        id: bot
+        uses: ./.github/actions/setup-easyscience-bot
+        with:
+          app-id: ${{ vars.EASYSCIENCE_APP_ID }}
+          private-key: ${{ secrets.EASYSCIENCE_APP_KEY }}
+
       - name: Dispatch code tests workflow
-        uses: actions/github-script@v7
+        uses: ./.github/actions/github-script
         with:
-          github-token: ${{ secrets.GITHUB_TOKEN }}
+          github-token: ${{ steps.bot.outputs.token }}
           script: |
             await github.rest.actions.createWorkflowDispatch({
               owner: context.repo.owner,
               repo: context.repo.repo,
-              workflow_id: "test.yaml",
+              workflow_id: "test.yml",
               ref: "develop"
             });
diff --git a/.github/workflows/test.yaml b/.github/workflows/test.yaml
deleted file mode 100644
index 11b06f14..00000000
--- a/.github/workflows/test.yaml
+++ /dev/null
@@ -1,259 +0,0 @@
-# This is the main workflow for testing the code before and after
-# packaging it.
-# The workflow is divided into three jobs:
-# 1. env-prepare:
-#    - Prepare the environment for testing
-# 2. source-test:
-#    - Test the code base against the latest code in the repository
-#    - Create the Python package
-#    - Upload the Python package for the next job
-# 3. package-test:
-#    - Download the Python package (including extra files) from the previous job
-#    - Install the downloaded Python package
-#    - Test the code base against the installed package
-# 4. dashboard-build-trigger:
-#    - Trigger the dashboard build workflow to update the code quality
-#      metrics on the dashboard
-
-name: Code and package tests
-
-on:
-  # Trigger the workflow on push
-  push:
-    # Every branch
-    branches: ['**']
-    # But do not run this workflow on creating a new tag starting with
-    # 'v', e.g. 'v1.0.3' (see publish-pypi.yml)
-    tags-ignore: ['v*']
-  # Trigger the workflow on pull request
-  pull_request:
-    branches: ['**']
-  # Allows you to run this workflow manually from the Actions tab
-  workflow_dispatch:
-
-# Need permissions to trigger the dashboard build workflow
-permissions:
-  actions: write
-  contents: read
-
-# Allow only one concurrent workflow, skipping runs queued between the run
-# in-progress and latest queued. And cancel in-progress runs.
-concurrency:
-  group:
-    ${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }}
-  cancel-in-progress: true
-
-# Set the environment variables to be used in all jobs defined in this workflow
-env:
-  CI_BRANCH: ${{ github.head_ref || github.ref_name }}
-
-jobs:
-  # Job 1: Prepare environment
-  env-prepare:
-    runs-on: [ubuntu-latest]
-
-    outputs:
-      pytest-marks: ${{ steps.set-mark.outputs.pytest_marks }}
-
-    steps:
-      # Determine if integration tests should be run fully or only the fast ones
-      # (to save time on branches other than master and develop)
-      - name: Set mark for integration tests
-        id: set-mark
-        run: |
-          if [[ "${{ env.CI_BRANCH }}" == "master" || "${{ env.CI_BRANCH }}" == "develop" ]]; then
-            echo "pytest_marks=" >> $GITHUB_OUTPUT
-          else
-            echo "pytest_marks=-m fast" >> $GITHUB_OUTPUT
-          fi
-
-  # Job 2: Test code
-  source-test:
-    needs: env-prepare # depend on previous job
-
-    strategy:
-      fail-fast: false
-      matrix:
-        os: [ubuntu-24.04, macos-14, windows-2022]
-
-    runs-on: ${{ matrix.os }}
-
-    env:
-      PIXI_ENVS: 'py311-dev py313-dev'
-
-    steps:
-      - name: Checkout repository
-        uses: actions/checkout@v5
-        with:
-          fetch-depth: '0' # full history with tags to get the version number by versioningit
-
-      - name: Set up pixi
-        uses: prefix-dev/setup-pixi@v0.9.3
-        with:
-          environments: ${{ env.PIXI_ENVS }}
-          run-install: true
-          frozen: true
-          cache: false
-          post-cleanup: false
-
-      - name: Install and setup development dependencies
-        shell: bash
-        run: |
-          for env in ${{ env.PIXI_ENVS }}; do
-            echo "🔹🔸🔹🔸🔹   Current env: $env   🔹🔸🔹🔸🔹"
-            pixi run --environment $env dev
-            echo "PYTHONPATH:"
-            pixi run printenv PYTHONPATH || true
-            pixi run --environment $env easydiffraction --version
-          done
-
-      - name: Run unit tests
-        shell: bash
-        run: |
-          for env in ${{ env.PIXI_ENVS }}; do
-            echo "🔹🔸🔹🔸🔹   Current env: $env   🔹🔸🔹🔸🔹"
-            pixi run --environment $env unit-tests
-          done
-
-      - name:
-          Run integration tests ${{ needs.env-prepare.outputs.pytest-marks }}
-        shell: bash
-        run: |
-          for env in ${{ env.PIXI_ENVS }}; do
-            echo "🔹🔸🔹🔸🔹   Current env: $env   🔹🔸🔹🔸🔹"
-            pixi run --environment $env integration-tests ${{ needs.env-prepare.outputs.pytest-marks }}
-          done
-
-      # Delete all local tags when not on a tagged commit to force versioningit
-      # to fall back to the configured default-tag, which is '999.0.0' in our case.
-      # This is needed for testing the package in the next job, as its version
-      # must be higher than the PyPI version for pip to prefer the local version.
-      - name: Force using versioningit default tag (non tagged release)
-        if: startsWith(github.ref , 'refs/tags/v') != true
-        run: git tag --delete $(git tag)
-
-      - name: Create Python package
-        shell: bash
-        run: |
-          for env in ${{ env.PIXI_ENVS }}; do
-            echo "🔹🔸🔹🔸🔹   Current env: $env   🔹🔸🔹🔸🔹"
-            pixi run -e $env dist-build
-            env_prefix="${env%%-*}"
-            echo "📦 Moving built wheel to dist/$env_prefix/"
-            pixi run mkdir -p dist/$env_prefix
-            pixi run mv dist/*.whl dist/$env_prefix/
-          done
-
-      - name: Remove local easydiffraction from pixi.toml
-        shell: bash
-        run: pixi remove --pypi easydiffraction
-
-      - name: Remove Python cache files before uploading
-        shell: bash
-        run: pixi run clean-pycache
-
-      # More than one file/dir need to be specified in 'path', to preserve the
-      # structure of the dist/ directory, not only its contents.
-      - name: Upload Python package for the next job
-        uses: actions/upload-artifact@v4
-        with:
-          name: edl_${{ matrix.os }}_${{ runner.arch }}
-          path: |
-            dist/
-            tests/
-            pytest.ini
-            pixi.toml
-            pixi.lock
-          if-no-files-found: 'error'
-          compression-level: 0
-
-  # Job 3: Test the package
-  package-test:
-    needs: [env-prepare, source-test] # depend on previous jobs
-
-    strategy:
-      fail-fast: false
-      matrix:
-        os: [ubuntu-24.04, macos-14, windows-2022]
-
-    runs-on: ${{ matrix.os }}
-
-    env:
-      PIXI_ENVS: 'py311-dev py313-dev'
-
-    steps:
-      - name:
-          Download zipped Python package (incl. extra files) from previous job
-        uses: actions/download-artifact@v4
-        with: # name or path are taken from the upload step of the previous job
-          name: edl_${{ matrix.os }}_${{ runner.arch }}
-          path: . # directory to extract downloaded zipped artifacts
-
-      - name: Set up pixi
-        uses: prefix-dev/setup-pixi@v0.9.3
-        with:
-          environments: ${{ env.PIXI_ENVS }}
-          run-install: true
-          frozen: true
-          cache: false
-          post-cleanup: false
-
-      - name: Install and setup development dependencies
-        shell: bash
-        run: |
-          for env in ${{ env.PIXI_ENVS }}; do
-            echo "🔹🔸🔹🔸🔹   Current env: $env   🔹🔸🔹🔸🔹"
-            pixi run --environment $env wheel
-          done
-
-      - name: Install easydiffraction package from the built wheel
-        shell: bash
-        run: |
-          for env in ${{ env.PIXI_ENVS }}; do
-            echo "🔹🔸🔹🔸🔹   Current env: $env   🔹🔸🔹🔸🔹"
-            env_prefix="${env%%-*}"
-            echo "📦 Looking for wheel in dist/$env_prefix/"
-            whl_path="$(find dist/${env_prefix} -name '*.whl' | head -1)"
-            echo "📦 Installing easydiffraction from: $whl_path"
-            pixi run --environment $env python -m uv pip install "${whl_path}[all]" --reinstall-package easydiffraction
-            pixi run --environment $env easydiffraction --version
-          done
-
-      - name: Run unit tests
-        shell: bash
-        run: |
-          for env in ${{ env.PIXI_ENVS }}; do
-            echo "🔹🔸🔹🔸🔹   Current env: $env   🔹🔸🔹🔸🔹"
-            pixi run --environment $env unit-tests
-          done
-
-      - name:
-          Run integration tests ${{ needs.env-prepare.outputs.pytest-marks }}
-        shell: bash
-        run: |
-          for env in ${{ env.PIXI_ENVS }}; do
-            echo "🔹🔸🔹🔸🔹   Current env: $env   🔹🔸🔹🔸🔹"
-            pixi run --environment $env integration-tests ${{ needs.env-prepare.outputs.pytest-marks }}
-          done
-
-  # Job 4: Trigger dashboard build
-  dashboard-build-trigger:
-    needs: [source-test, package-test] # depend on previous jobs
-
-    runs-on: ubuntu-latest
-
-    steps:
-      - name: Check-out repository
-        uses: actions/checkout@v5
-
-      - name: Trigger dashboard build
-        uses: actions/github-script@v7
-        with:
-          github-token: ${{ secrets.GITHUB_TOKEN }}
-          script: |
-            await github.rest.actions.createWorkflowDispatch({
-              owner: context.repo.owner,
-              repo: context.repo.repo,
-              workflow_id: "dashboard.yaml",
-              ref: "${{ env.CI_BRANCH }}"
-            });
diff --git a/.github/workflows/test.yml b/.github/workflows/test.yml
new file mode 100644
index 00000000..745c0b03
--- /dev/null
+++ b/.github/workflows/test.yml
@@ -0,0 +1,279 @@
+# This is the main workflow for testing the code before and after
+# packaging it.
+# The workflow is divided into three jobs:
+# 1. env-prepare:
+#    - Prepare the environment for testing
+# 2. source-test:
+#    - Test the code base against the latest code in the repository
+#    - Create the Python package
+#    - Upload the Python package for the next job
+# 3. package-test:
+#    - Download the Python package (including extra files) from the previous job
+#    - Install the downloaded Python package
+#    - Test the code base against the installed package
+# 4. dashboard-build-trigger:
+#    - Trigger the dashboard build workflow to update the code quality
+#      metrics on the dashboard
+
+name: Code and package tests
+
+on:
+  # Trigger the workflow on push
+  push:
+    branches-ignore: [master, main] # Already verified in PR
+    # But do not run this workflow on creating a new tag starting with
+    # 'v', e.g. 'v1.0.3' (see publish-pypi.yml)
+    tags-ignore: ['v*']
+  # Trigger the workflow on pull request
+  pull_request:
+    branches: ['**']
+  # Allows you to run this workflow manually from the Actions tab
+  workflow_dispatch:
+
+# Need permissions to trigger the dashboard build workflow
+permissions:
+  actions: write
+  contents: read
+
+# Allow only one concurrent workflow, skipping runs queued between the run
+# in-progress and latest queued. And cancel in-progress runs.
+concurrency:
+  group: ${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }}
+  cancel-in-progress: true
+
+# Set the environment variables to be used in all jobs defined in this workflow
+env:
+  CI_BRANCH: ${{ github.head_ref || github.ref_name }}
+  PY_VERSIONS: '3.11 3.13'
+  PIXI_ENVS: 'py-311-env py-313-env'
+
+jobs:
+  # Job 1: Set up environment variables
+  env-prepare:
+    runs-on: [ubuntu-latest]
+
+    outputs:
+      pytest-marks: ${{ steps.set-mark.outputs.pytest_marks }}
+
+    steps:
+      # Determine if integration tests should be run fully or only the fast ones
+      # (to save time on branches other than master and develop)
+      - name: Set mark for integration tests
+        id: set-mark
+        run: |
+          if [[ "${{ env.CI_BRANCH }}" == "master" || "${{ env.CI_BRANCH }}" == "develop" ]]; then
+            echo "pytest_marks=" >> $GITHUB_OUTPUT
+          else
+            echo "pytest_marks=-m fast" >> $GITHUB_OUTPUT
+          fi
+
+  # Job 2: Test code
+  source-test:
+    needs: env-prepare # depend on previous job
+
+    strategy:
+      fail-fast: false
+      matrix:
+        os: [ubuntu-24.04, macos-15, windows-2022]
+
+    runs-on: ${{ matrix.os }}
+
+    steps:
+      - name: Checkout repository
+        uses: actions/checkout@v5
+
+      - name: Set up pixi
+        uses: ./.github/actions/setup-pixi
+        with:
+          environments: ${{ env.PIXI_ENVS }}
+
+      - name: Run unit tests
+        shell: bash
+        run: |
+          set -euo pipefail
+
+          for py_ver in $PY_VERSIONS; do
+            echo
+            echo "🔹🔸🔹🔸🔹 Python: $py_ver 🔹🔸🔹🔸🔹"
+
+            env="py-$(echo $py_ver | tr -d .)-env" # Converts 3.11 -> py-311-env
+
+            echo "Running tests in environment: $env"
+            pixi run --environment $env unit-tests
+          done
+
+      - name: Run integration tests ${{ needs.env-prepare.outputs.pytest-marks }}
+        shell: bash
+        run: |
+          set -euo pipefail
+
+          for py_ver in $PY_VERSIONS; do
+            echo
+            echo "🔹🔸🔹🔸🔹 Python: $py_ver 🔹🔸🔹🔸🔹"
+
+            env="py-$(echo $py_ver | tr -d .)-env" # Converts 3.11 -> py-311-env
+
+            echo "Running tests in environment: $env"
+            pixi run --environment $env integration-tests ${{ needs.env-prepare.outputs.pytest-marks }}
+          done
+
+      # Delete all local tags when not on a tagged commit to force versioningit
+      # to fall back to the configured default-tag, which is '999.0.0' in our case.
+      # This is needed for testing the package in the next job, as its version
+      # must be higher than the PyPI version for pip to prefer the local version.
+      - name: Force using versioningit default tag (non tagged release)
+        if: startsWith(github.ref , 'refs/tags/v') != true
+        run: git tag --delete $(git tag)
+
+      - name: Build package wheels for all Python versions
+        shell: bash
+        run: |
+          set -euo pipefail
+
+          for py_ver in $PY_VERSIONS; do
+            echo
+            echo "🔹🔸🔹🔸🔹 Python: $py_ver 🔹🔸🔹🔸🔹"
+
+            env="py-$(echo $py_ver | tr -d .)-env" # Converts 3.11 -> py-311-env
+
+            echo "Building wheel in environment: $env"
+            pixi run --environment $env dist-build
+
+            echo "Moving built wheel to dist/py$py_ver/"
+            pixi run mkdir -p dist/py$py_ver
+            pixi run mv dist/*.whl dist/py$py_ver/
+          done
+
+      - name: Remove Python cache files before uploading
+        shell: bash
+        run: pixi run clean-pycache
+
+      # More than one file/dir need to be specified in 'path', to preserve the
+      # structure of the dist/ directory, not only its contents.
+      - name: Upload package (incl. extras) for next job
+        uses: ./.github/actions/upload-artifact
+        with:
+          name: easydiffraction_${{ matrix.os }}_${{ runner.arch }}
+          path: dist/
+
+  # Job 3: Test the package
+  package-test:
+    needs: source-test # depend on previous job
+
+    strategy:
+      fail-fast: false
+      matrix:
+        os: [ubuntu-24.04, macos-15, windows-2022]
+
+    runs-on: ${{ matrix.os }}
+
+    steps:
+      - name: Checkout repository
+        uses: actions/checkout@v5
+
+      - name: Download package (incl. extras) from previous job
+        uses: ./.github/actions/download-artifact
+        with:
+          # name and path should be taken from the upload step of the previous job
+          name: easydiffraction_${{ matrix.os }}_${{ runner.arch }}
+          path: dist/
+
+      - name: Set up pixi
+        uses: ./.github/actions/setup-pixi
+        with:
+          environments: ''
+          activate-environment: ''
+          run-install: false
+          frozen: false
+
+      - name: Install easydiffraction from the built wheel
+        shell: bash
+        run: |
+          set -euo pipefail
+
+          for py_ver in $PY_VERSIONS; do
+            echo
+            echo "🔹🔸🔹🔸🔹 Python: $py_ver 🔹🔸🔹🔸🔹"
+
+            echo "Initializing pixi project"
+            pixi init easydiffraction_py$py_ver
+            cd easydiffraction_py$py_ver
+
+            echo "Setting macOS 14.0 as minimum required"
+            pixi project system-requirements add macos 14.0
+
+            echo "Adding Python $py_ver"
+            pixi add "python=$py_ver"
+
+            echo "Adding GNU Scientific Library (required by diffpy.pdffit2)"
+            pixi add gsl
+
+            # diffpy.pdffit2 wheel links @rpath/libc++.1.dylib, which must be
+            # present in the conda env lib/ dir on macOS (Python propagates its
+            # own @loader_path/../lib/ rpath to loaded extensions). Added as
+            # platform-specific deps so this is a no-op on Linux/Windows.
+            echo "Adding libc++ for macOS (required by diffpy.pdffit2)"
+            pixi add --platform osx-arm64 libcxx
+            pixi add --platform osx-64 libcxx
+
+            echo "Looking for wheel in ../dist/py$py_ver/"
+            ls -l "../dist/py$py_ver/"
+
+            whl_path=(../dist/"py$py_ver"/*.whl)
+            if [[ ! -f "${whl_path[0]}" ]]; then
+              echo "❌ No wheel found in ../dist/py$py_ver/"
+              exit 1
+            fi
+
+            whl_url="file://$(python -c 'import os,sys; print(os.path.abspath(sys.argv[1]))' "${whl_path[0]}")"
+
+            echo "Adding easydiffraction from: $whl_url"
+            pixi add --pypi "easydiffraction[dev] @ ${whl_url}"
+
+            echo "Exiting pixi project directory"
+            cd ..
+          done
+
+      - name: Run unit tests
+        shell: bash
+        run: |
+          set -euo pipefail
+
+          for py_ver in $PY_VERSIONS; do
+            echo
+            echo "🔹🔸🔹🔸🔹 Python: $py_ver 🔹🔸🔹🔸🔹"
+
+            echo "Entering pixi project directory easydiffraction_py$py_ver"
+            cd easydiffraction_py$py_ver
+
+            echo "Running tests"
+            pixi run python -m pytest ../tests/unit/ --color=yes -v
+
+            echo "Exiting pixi project directory"
+            cd ..
+          done
+
+      - name: Run integration tests ${{ needs.env-prepare.outputs.pytest-marks }}
+        shell: bash
+        run: |
+          set -euo pipefail
+
+          for py_ver in $PY_VERSIONS; do
+            echo
+            echo "🔹🔸🔹🔸🔹 Python: $py_ver 🔹🔸🔹🔸🔹"
+
+            echo "Entering pixi project directory easydiffraction_py$py_ver"
+            cd easydiffraction_py$py_ver
+
+            echo "Running tests"
+            pixi run python -m pytest ../tests/integration/ --color=yes -n auto -v ${{ needs.env-prepare.outputs.pytest-marks }}
+
+            echo "Exiting pixi project directory"
+            cd ..
+          done
+
+  # Job 4: Build and publish dashboard (reusable workflow)
+  run-reusable-workflows:
+    needs: package-test # depend on previous job
+    uses: ./.github/workflows/dashboard.yml
+    secrets: inherit
diff --git a/.github/workflows/tutorial-tests-colab.yaml b/.github/workflows/tutorial-tests-colab.yaml
index 08e2e2b6..35c4a753 100644
--- a/.github/workflows/tutorial-tests-colab.yaml
+++ b/.github/workflows/tutorial-tests-colab.yaml
@@ -7,8 +7,7 @@ on:
 # Allow only one concurrent workflow, skipping runs queued between the run in-progress and latest queued.
 # And cancel in-progress runs.
 concurrency:
-  group:
-    ${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }}
+  group: ${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }}
   cancel-in-progress: true
 
 jobs:
@@ -37,10 +36,10 @@ jobs:
 
       - name: Install Python dependencies
         run:
-          python -m pip install 'easydiffraction[visualization]' nbconvert
-          nbmake pytest pytest-xdist
+          python -m pip install 'easydiffraction[visualization]' nbconvert nbmake pytest
+          pytest-xdist
 
       - name: Check if Jupyter Notebooks run without errors
         run: >
-          python -m pytest --nbmake docs/tutorials/ --nbmake-timeout=600
-          --color=yes -n=auto
+          python -m pytest --nbmake docs/tutorials/ --nbmake-timeout=600 --color=yes
+          -n=auto
diff --git a/.github/workflows/tutorial-tests-trigger.yaml b/.github/workflows/tutorial-tests-trigger.yml
similarity index 61%
rename from .github/workflows/tutorial-tests-trigger.yaml
rename to .github/workflows/tutorial-tests-trigger.yml
index ea32eef2..1bc27f4f 100644
--- a/.github/workflows/tutorial-tests-trigger.yaml
+++ b/.github/workflows/tutorial-tests-trigger.yml
@@ -7,6 +7,9 @@ on:
   # Allows you to run this workflow manually from the Actions tab
   workflow_dispatch:
 
+permissions:
+  contents: read
+
 jobs:
   tutorial-tests-trigger:
     runs-on: ubuntu-latest
@@ -17,14 +20,21 @@ jobs:
         with:
           ref: develop
 
+      - name: Setup easyscience[bot]
+        id: bot
+        uses: ./.github/actions/setup-easyscience-bot
+        with:
+          app-id: ${{ vars.EASYSCIENCE_APP_ID }}
+          private-key: ${{ secrets.EASYSCIENCE_APP_KEY }}
+
       - name: Dispatch tutorial tests workflow
-        uses: actions/github-script@v7
+        uses: ./.github/actions/github-script
         with:
-          github-token: ${{ secrets.GITHUB_TOKEN }}
+          github-token: ${{ steps.bot.outputs.token }}
           script: |
             await github.rest.actions.createWorkflowDispatch({
               owner: context.repo.owner,
               repo: context.repo.repo,
-              workflow_id: "tutorial-tests.yaml",
+              workflow_id: "tutorial-tests.yml",
               ref: "develop"
             });
diff --git a/.github/workflows/tutorial-tests.yaml b/.github/workflows/tutorial-tests.yml
similarity index 55%
rename from .github/workflows/tutorial-tests.yaml
rename to .github/workflows/tutorial-tests.yml
index 301b43d3..4c9244d0 100644
--- a/.github/workflows/tutorial-tests.yaml
+++ b/.github/workflows/tutorial-tests.yml
@@ -4,7 +4,7 @@ on:
   # Trigger the workflow on push
   push:
     # Selected branches
-    branches: [master, main, develop]
+    branches: [develop] # master and main are already verified in PR
   # Trigger the workflow on pull request
   pull_request:
     branches: ['**']
@@ -15,11 +15,13 @@ on:
   # Allows you to run this workflow manually from the Actions tab
   workflow_dispatch:
 
+permissions:
+  contents: read
+
 # Allow only one concurrent workflow, skipping runs queued between the run
 # in-progress and latest queued. And cancel in-progress runs.
 concurrency:
-  group:
-    ${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }}
+  group: ${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }}
   cancel-in-progress: true
 
 # Set the environment variables to be used in all jobs defined in this workflow
@@ -41,24 +43,13 @@ jobs:
         uses: actions/checkout@v5
 
       - name: Set up pixi
-        uses: prefix-dev/setup-pixi@v0.9.3
-        with:
-          environments: default
-          activate-environment: default
-          run-install: true
-          frozen: true
-          cache: false
-          post-cleanup: false
-
-      - name: Install and setup development dependencies
-        shell: bash
-        run: pixi run dev
+        uses: ./.github/actions/setup-pixi
 
       - name: Test tutorials as python scripts
         shell: bash
         run: pixi run script-tests
 
-      - name: Convert tutorial scripts to notebooks
+      - name: Prepare notebooks
         shell: bash
         run: pixi run notebook-prepare
 
@@ -66,24 +57,8 @@ jobs:
         shell: bash
         run: pixi run notebook-tests
 
-  # Job 2: Trigger dashboard build
-  dashboard-build-trigger:
-    needs: tutorial-tests
-
-    runs-on: ubuntu-latest
-
-    steps:
-      - name: Check-out repository
-        uses: actions/checkout@v5
-
-      - name: Trigger dashboard build
-        uses: actions/github-script@v7
-        with:
-          github-token: ${{ secrets.GITHUB_TOKEN }}
-          script: |
-            await github.rest.actions.createWorkflowDispatch({
-              owner: context.repo.owner,
-              repo: context.repo.repo,
-              workflow_id: "dashboard.yaml",
-              ref: "${{ env.CI_BRANCH }}"
-            });
+  # Job 2: Build and publish dashboard (reusable workflow)
+  run-reusable-workflows:
+    needs: tutorial-tests # depend on previous job
+    uses: ./.github/workflows/dashboard.yml
+    secrets: inherit
diff --git a/.gitignore b/.gitignore
index 2c43d2b8..6dc595c7 100644
--- a/.gitignore
+++ b/.gitignore
@@ -1,20 +1,19 @@
 # Python
-__pycache__
-.venv
+__pycache__/
+.venv/
 .coverage
 .pyc
 
-# PyTest
-.pytest_cache
-
-# MyPy
-.mypy_cache
-
 # Pixi
-.pixi
+.pixi/
 
-# Ruff
-.ruff_cache
+# PyInstaller
+dist/
+build/
+*.spec
+
+# MkDocs
+docs/site/
 
 # Jupyter Notebooks
 .ipynb_checkpoints
@@ -24,16 +23,10 @@ node_modules/
 
 # QtCreator
 *.autosave
-
-# QtCreator Qml
 *.qmlproject.user
 *.qmlproject.user.*
-
-# QtCreator Python
 *.pyproject.user
 *.pyproject.user.*
-
-# QtCreator CMake
 CMakeLists.txt.user*
 
 # PyCharm
@@ -46,3 +39,8 @@ CMakeLists.txt.user*
 .DS_Store
 *.app
 *.dmg
+
+# Misc
+.cache/
+*.log
+*.zip
diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
index c3d471cd..9a3855f4 100644
--- a/.pre-commit-config.yaml
+++ b/.pre-commit-config.yaml
@@ -1,57 +1,61 @@
 repos:
   - repo: local
     hooks:
-      # -----------------
-      # Pre-commit checks
-      # -----------------
+      # -------------
+      # Manual checks
+      # -------------
       - id: pixi-pyproject-check
         name: pixi run pyproject-check
         entry: pixi run pyproject-check
         language: system
         pass_filenames: false
-        stages: [pre-commit]
+        stages: [manual]
 
-      - id: pixi-py-lint-check-staged
-        name: pixi run py-lint-check-staged
-        entry: pixi run py-lint-check-pre
+      - id: license-headers-check
+        name: pixi run license-check
+        entry: pixi run license-check
         language: system
         pass_filenames: false
-        stages: [pre-commit]
+        stages: [manual]
 
-      - id: pixi-py-format-check-staged
-        name: pixi run py-format-check-staged
-        entry: pixi run py-format-check-pre
+      - id: pixi-py-lint-check
+        name: pixi run py-lint-check
+        entry: pixi run py-lint-check
         language: system
         pass_filenames: false
-        stages: [pre-commit]
+        stages: [manual]
 
-      - id: pixi-nonpy-format-check-modified
-        name: pixi run nonpy-format-check-modified
-        entry: pixi run nonpy-format-check-modified
+      - id: pixi-py-format-check
+        name: pixi run py-format-check
+        entry: pixi run py-format-check
         language: system
         pass_filenames: false
-        stages: [pre-commit]
+        stages: [manual]
 
-      - id: pixi-docs-format-check
-        name: pixi run docs-format-check
-        entry: pixi run docs-format-check
+      - id: pixi-docstring-lint-check
+        name: pixi run docstring-lint-check
+        entry: pixi run docstring-lint-check
         language: system
         pass_filenames: false
-        stages: [pre-commit]
+        stages: [manual]
 
-      # ----------------
-      # Pre-push checks
-      # ----------------
       - id: pixi-nonpy-format-check
         name: pixi run nonpy-format-check
         entry: pixi run nonpy-format-check
         language: system
         pass_filenames: false
-        stages: [pre-push]
+        stages: [manual]
+
+      - id: pixi-notebook-lint-check
+        name: pixi run notebook-lint-check
+        entry: pixi run notebook-lint-check
+        language: system
+        pass_filenames: false
+        stages: [manual]
 
       - id: pixi-unit-tests
         name: pixi run unit-tests
         entry: pixi run unit-tests
         language: system
         pass_filenames: false
-        stages: [pre-push]
+        stages: [manual]
diff --git a/.prettierignore b/.prettierignore
index 4bd61611..a08c3c48 100644
--- a/.prettierignore
+++ b/.prettierignore
@@ -1,6 +1,32 @@
+# Git
+.git/
+
+# Copier
+.copier-answers*.yml
+
 # Pixi
 .pixi
 pixi.lock
 
+# MkDocs
+docs/overrides/
+docs/site/
+docs/docs/assets/
+
+# Python
+.pytest_cache/
+
 # MyPy
-.mypy_cache
+.mypy_cache/
+
+# Ruff
+.ruff_cache/
+
+# Node
+node_modules
+
+# Misc
+.benchmarks
+.cache
+deps/
+tmp/
diff --git a/CONTRIBUTING.md b/CONTRIBUTING.md
index f05c041f..e8dc420f 100644
--- a/CONTRIBUTING.md
+++ b/CONTRIBUTING.md
@@ -1,94 +1,446 @@
-# Contributing
+# Contributing to EasyDiffraction
 
-When contributing, please first discuss the change you wish to make via issue,
-email, or any other method with the owners of this repository before making a
-change.
+Thank you for your interest in contributing to **EasyDiffraction**!
 
-Please note we have a code of conduct, please follow it in all your interactions
-with the project.
+This guide explains how you can:
 
-## Pull Request Process
+- Report issues
+- Contribute code
+- Improve documentation
+- Suggest enhancements
+- Interact with the EasyScience community
 
-1. Ensure any install or build dependencies are removed before the end of the
-   layer when doing a build.
-2. Update the README.md with details of changes to the interface, this includes
-   new environment variables, exposed ports, useful file locations and container
-   parameters.
-3. Increase the version numbers in any example files and the README.md to the
-   new version that this Pull Request would represent. The versioning scheme we
-   use is [SemVer](http://semver.org/).
-4. You may merge the Pull Request in once you have the sign-off of two other
-   developers, or if you do not have permission to do that, you may request the
-   second reviewer to merge it for you.
+Whether you are an experienced developer or contributing for the first
+time, this document walks you through the entire process step by step.
 
-## Code of Conduct
+Please make sure you follow the EasyScience organization-wide
+[Code of Conduct](https://github.com/easyscience/.github/blob/master/CODE_OF_CONDUCT.md).
 
-### Our Pledge
+---
 
-In the interest of fostering an open and welcoming environment, we as
-contributors and maintainers pledge to make participation in our project and our
-community a harassment-free experience for everyone, regardless of age, body
-size, disability, ethnicity, gender identity and expression, level of
-experience, nationality, personal appearance, race, religion, or sexual identity
-and orientation.
+## Table of Contents
 
-### Our Standards
+- [How to Interact With This Project](#how-to-interact-with-this-project)
+- [1. Understanding the Development Model](#1-understanding-the-development-model)
+- [2. Getting the Code](#2-getting-the-code)
+- [3. Setting Up the Development Environment](#3-setting-up-the-development-environment)
+- [4. Creating a Branch](#4-creating-a-branch)
+- [5. Implementing Your Changes](#5-implementing-your-changes)
+- [6. Code Quality Checks](#6-code-quality-checks)
+- [7. Opening a Pull Request](#7-opening-a-pull-request)
+- [8. Continuous Integration (CI)](#8-continuous-integration-ci)
+- [9. Code Review](#9-code-review)
+- [10. Documentation Contributions](#10-documentation-contributions)
+- [11. Reporting Issues](#11-reporting-issues)
+- [12. Security Issues](#12-security-issues)
+- [13. Releases](#13-releases)
 
-Examples of behavior that contributes to creating a positive environment
-include:
+---
 
-- Being respectful of differing viewpoints and experiences
-- Gracefully accepting constructive criticism
-- Focusing on what is best for the community
+## How to Interact With This Project
 
-Examples of unacceptable behavior by participants include:
+If you are not planning to contribute code, you may want to:
 
-- Trolling, insulting/derogatory comments, and personal or political attacks
-- Public or private harassment
-- Publishing others' private information, such as a physical or electronic
-  address, without explicit permission
-- Other conduct which could reasonably be considered inappropriate in a
-  professional setting
+- 🐞 Report a bug — see [Reporting Issues](#11-reporting-issues)
+- 🛡 Report a security issue — see
+  [Security Issues](#12-security-issues)
+- 💬 Ask a question or start a discussion at
+  [Project Discussions](https://github.com/easyscience/diffraction-lib/discussions)
 
-### Our Responsibilities
+If you plan to contribute code or documentation, continue below.
 
-Project maintainers are responsible for clarifying the standards of acceptable
-behavior and are expected to take appropriate and fair corrective action in
-response to any instances of unacceptable behavior.
+---
 
-Project maintainers have the right and responsibility to remove, edit, or reject
-comments, commits, code, wiki edits, issues, and other contributions that are
-not aligned to this Code of Conduct, or to ban temporarily or permanently any
-contributor for other behaviors that they deem inappropriate, threatening,
-offensive, or harmful.
+## 1. Understanding the Development Model
 
-### Scope
+Before you start coding, it is important to understand how development
+works in this project.
 
-This Code of Conduct applies both within project spaces and in public spaces
-when an individual is representing the project or its community. Examples of
-representing a project or community include using an official project e-mail
-address, posting via an official social media account, or acting as an appointed
-representative at an online or offline event. Representation of a project may be
-further defined and clarified by project maintainers.
+### Branching Strategy
 
-### Enforcement
+We use the following branches:
 
-Instances of abusive, harassing, or otherwise unacceptable behavior may be
-reported by contacting the project team at suport@easydiffraction.org. All
-complaints will be reviewed and investigated and will result in a response that
-is deemed necessary and appropriate to the circumstances. The project team is
-obligated to maintain confidentiality with regard to the reporter of an
-incident. Further details of specific enforcement policies may be posted
-separately.
+- `master` — stable releases only
+- `develop` — active development branch
+- Short-lived branches — feature or fix branches created for a single
+  contribution and deleted after merge
 
-Project maintainers who do not follow or enforce the Code of Conduct in good
-faith may face temporary or permanent repercussions as determined by other
-members of the project's leadership.
+> [!IMPORTANT]
+>
+> All normal contributions must target the `develop` branch.
+>
+> - Do **not** open Pull Requests against `master`
+> - Always create your branch from `develop`
+> - Always target `develop` when opening a Pull Request
 
-### Attribution
+See ADR easyscience/.github#12 for more details on the branching
+strategy.
 
-This Code of Conduct is adapted from the [Contributor Covenant][homepage],
-version 1.4, available at [http://contributor-covenant.org/version/1/4][version]
+---
 
-[homepage]: http://contributor-covenant.org
-[version]: http://contributor-covenant.org/version/1/4/
+## 2. Getting the Code
+
+### 2.1. If You Are an External Contributor
+
+If you are not a core maintainer of this repository, follow these steps.
+
+1. Open the repository page:
+   `https://github.com/easyscience/diffraction-lib`
+
+2. Click the **Fork** button (top-right corner). This creates your own
+   copy of the repository.
+
+3. Clone your fork locally:
+
+   ```bash
+   git clone https://github.com/<your-username>/diffraction-lib.git
+   cd diffraction-lib
+   ```
+
+4. Add the original repository as `upstream`:
+
+   ```bash
+   git remote add upstream https://github.com/easyscience/diffraction-lib.git
+   ```
+
+5. Switch to the `develop` branch and update it:
+
+   ```bash
+   git fetch upstream
+   git checkout develop
+   git pull upstream develop
+   ```
+
+If you have contributed before, make sure your local `develop` branch is
+up to date before starting new work. You can update it with:
+
+```bash
+git fetch upstream
+git pull upstream develop
+```
+
+This ensures you are working on the latest version of the project.
+
+### 2.2. If You Are a Core Team Member
+
+Core team members can create branches directly in this repository and
+therefore do not need to fork it, but the rest of the workflow remains
+the same.
+
+---
+
+## 3. Setting Up the Development Environment
+
+You need:
+
+- Git
+- Pixi
+
+EasyScience projects use **Pixi** to manage the development environment.
+
+To install Pixi, follow the official instructions:
+https://pixi.prefix.dev/latest/installation/
+
+You do **not** need to manually install Python. Pixi automatically:
+
+- Creates the correct Python environment
+- Installs all required dependencies
+- Installs development tools (linters, formatters, test tools)
+
+Set up the environment:
+
+```bash
+pixi install
+pixi run post-install  # Install additional tooling
+```
+
+After this step, your development environment is ready.
+
+See ADR easyscience/.github#63 for more details about using Pixi for
+development.
+
+---
+
+## 4. Creating a Branch
+
+Never work directly on `develop`.
+
+Create a new branch:
+
+```bash
+git checkout -b my-change develop
+```
+
+> [!IMPORTANT]
+>
+> Use a clear and descriptive name, for example:
+>
+> - `improve-solver-speed`
+> - `fix-boundary-condition`
+> - `add-tutorial-example`
+
+Clear branch names make reviews and history easier to understand.
+
+---
+
+## 5. Implementing Your Changes
+
+While developing, make small, logical commits with clear messages.
+
+Example:
+
+```bash
+git add .
+git commit -m "Improve performance of time integrator for large systems"
+```
+
+---
+
+## 6. Code Quality Checks
+
+> [!IMPORTANT]
+>
+> When adding new functionality or making changes, make sure to add or
+> update the following as needed:
+>
+> - 📘 docstrings
+> - 🧪 unit tests
+
+Before opening a Pull Request, always run:
+
+```bash
+pixi run check
+```
+
+This command:
+
+- Validates the pyproject.toml file
+- Checks for licence headers in code files
+- Identifies linting and formatting issues in Python code
+- Checks docstring linting and formatting issues in Python code
+- Detects formatting issues in non-Python files (MD, YAML, TOML etc.)
+- Checks linting issues in Jupyter notebooks (if applicable)
+- Runs unit tests
+
+A successful run should look like this:
+
+```bash
+pixi run pyproject-check.......................Passed
+pixi run license-check.........................Passed
+pixi run py-lint-check.........................Passed
+pixi run py-format-check.......................Passed
+pixi run docstring-lint-check..................Passed
+pixi run nonpy-format-check....................Passed
+pixi run notebook-lint-check...................Passed
+pixi run unit-tests............................Passed
+```
+
+If something fails, read the error message carefully and fix the issue.
+
+You can run individual checks, for example, to run only unit tests:
+
+```bash
+pixi run unit-tests
+```
+
+or to run only Python linting checks:
+
+```bash
+pixi run py-lint-check
+```
+
+Some formatting issues can be fixed automatically:
+
+```bash
+pixi run fix
+```
+
+If everything is correctly formatted, you will see:
+
+```text
+✅ All auto-formatting steps completed successfully!
+```
+
+This indicates that the auto-formatting pipeline completed successfully.
+If you do not see this message and no error messages appear, try running
+the command again.
+
+If errors are reported, resolve them and re-run:
+
+```bash
+pixi run check
+```
+
+> [!IMPORTANT]
+>
+> All checks must pass before your Pull Request can be merged.
+
+If you are unsure how to fix an issue, ask for help in your Pull Request
+discussion.
+
+---
+
+## 7. Opening a Pull Request
+
+Push your branch:
+
+```bash
+git push origin my-change
+```
+
+On GitHub:
+
+- Click **Compare & Pull Request**
+- Ensure the base branch is `develop`
+- Write a clear and concise title
+- Add a description explaining what changed and why
+- Add the required `[scope]` label
+
+### Pull Request Title
+
+> [!IMPORTANT]
+>
+> The PR title appears in release notes and changelogs. It should be
+> concise and informative.
+
+Good examples:
+
+- Improve performance of time integrator for large systems
+- Fix incorrect boundary condition handling in solver
+- Add adaptive step-size control to ODE solver
+- Add tutorial for custom model configuration
+- Refactor solver API for improved readability
+
+### Required `[scope]` Label
+
+> [!IMPORTANT]
+>
+> Each Pull Request must include a `[scope]` label, which is used for
+> automatically suggesting version bumps when preparing a new release.
+
+The available scopes are:
+
+| Label                   | Description                                                             |
+| ----------------------- | ----------------------------------------------------------------------- |
+| `[scope] bug`           | Bug report or fix (major.minor.**PATCH**)                               |
+| `[scope] documentation` | Documentation-only changes (major.minor.patch.**POST**)                 |
+| `[scope] enhancement`   | Adds or improves features (major.**MINOR**.patch)                       |
+| `[scope] maintenance`   | Code/tooling cleanup without feature or bug fix (major.minor.**PATCH**) |
+| `[scope] significant`   | Breaking or major changes (**MAJOR**.minor.patch)                       |
+
+See ADR easyscience/.github#33 for more details on the standardized
+labeling scheme.
+
+---
+
+## 8. Continuous Integration (CI)
+
+After opening a Pull Request:
+
+- Automated checks run automatically
+- You will see green checkmarks or red crosses
+
+If checks fail:
+
+1. Open the failing check
+2. Read the logs
+3. Fix the issue locally
+4. Run `pixi run check`
+5. Push your changes
+
+The Pull Request updates automatically.
+
+---
+
+## 9. Code Review
+
+All Pull Requests are reviewed by at least one core team member.
+
+Code review is collaborative and aims to improve quality.
+
+Do not take comments personally — they are meant to help.
+
+To update your PR:
+
+```bash
+git add .
+git commit -m "Address review comments"
+git push
+```
+
+---
+
+## 10. Documentation Contributions
+
+> [!IMPORTANT]
+>
+> If your change affects user-facing functionality, update the project
+> documentation accordingly — specifically the `nav:` (navigation)
+> structure in `mkdocs.yml` and the relevant documentation Markdown
+> files in `docs/docs/`.
+>
+> ```text
+> 📁 docs
+> ├── 📁 docs        - Markdown files for documentation
+> │   └── ...
+> └── 📄 mkdocs.yml  - Configuration file (navigation, theme, etc.)
+> ```
+
+This may include:
+
+- API documentation
+- Examples
+- Tutorials
+- Jupyter notebooks
+
+Preview documentation locally:
+
+```bash
+pixi run docs-serve
+```
+
+Open the URL shown in the terminal to review your changes.
+
+---
+
+## 11. Reporting Issues
+
+If you find a bug but cannot work on a fix, please consider opening an
+issue.
+
+When reporting an issue, it helps to:
+
+- Search existing issues first.
+- Provide clear reproduction steps.
+- Include logs, screenshots, and environment details.
+
+Clear and detailed reports help maintainers investigate and resolve
+issues more effectively.
+
+---
+
+## 12. Security Issues
+
+> [!IMPORTANT]
+>
+> Please do **not** report security vulnerabilities publicly.
+
+If you discover a potential vulnerability, please contact the
+maintainers privately so the issue can be investigated and addressed
+responsibly.
+
+---
+
+## 13. Releases
+
+Once your contribution is merged into `develop`, it will eventually be
+included in the next stable release.
+
+When enough changes have accumulated in `develop`, core team members
+merge `develop` into `master` to prepare a new release. The release is
+then tagged and published on GitHub and PyPI.
+
+---
+
+Thank you for contributing to EasyDiffraction and the EasyScience
+ecosystem!
diff --git a/DEVELOPMENT.md b/DEVELOPMENT.md
deleted file mode 100644
index 2acffeb3..00000000
--- a/DEVELOPMENT.md
+++ /dev/null
@@ -1,150 +0,0 @@
-# Development
-
-This is an example of a workflow that describes the development process.
-
-## Installation and setup with Pixi
-
-- Install Pixi by following the instructions on the
-  [official Pixi Installation Guide](https://pixi.sh/latest/installation).
-- Clone repositories with assets for building documentation
-  ```bash
-  git clone https://github.com/easyscience/assets-docs.git
-  git clone https://github.com/easyscience/assets-branding.git
-  ```
-- Clone EasyDiffraction library repository
-  ```bash
-  git clone https://github.com/easyscience/diffraction-lib
-  ```
-- Go to the cloned directory
-  ```bash
-  cd diffraction-lib
-  ```
-- Create the environment defined in `pixi.toml` and install all necessary
-  dependencies:
-  ```bash
-  pixi install
-  ```
-- Install and setup development dependencies
-  ```bash
-  pixi run dev
-  ```
-
-## Making changes
-
-- Checkout/switch to the `develop` branch
-  ```bash
-  git checkout develop
-  ```
-- Create a new branch from the `develop` one
-  ```bash
-  git checkout -b new-feature
-  ```
-- Make changes in the code
-  ```bash
-  ...
-  ```
-
-## Checking code quality and testing
-
-### Pre-commit checks
-
-- Check code quality (configuration is in `pyproject.toml` and
-  `prettierrc.toml`)
-  ```bash
-  pixi run pre-commit-check
-  ```
-- Fix some code quality issues automatically
-  ```bash
-  pixi run pre-commit-fix
-  ```
-
-### Pre-push checks
-
-- Run tests and checks before pushing changes
-  ```bash
-  pixi run pre-push
-  ```
-
-### Individual tests and checks (if needed)
-
-- Check coverage by tests and docstrings
-  ```bash
-  pixi run cov
-  ```
-- Run unit tests
-  ```bash
-  pixi run unit-tests
-  ```
-- Run integration tests
-  ```bash
-  pixi run integration-tests
-  ```
-- Test tutorials as python scripts
-  ```bash
-  pixi run script-tests
-  ```
-- Convert tutorial scripts to notebooks
-  ```bash
-  pixi run notebook-prepare
-  ```
-- Test tutorials as notebooks
-  ```bash
-  pixi run notebook-tests
-  ```
-
-## Building and checking documentation with MkDocs
-
-- Move notebooks to docs/tutorials
-  ```bash
-  pixi run docs-notebooks
-  ```
-- Add extra files to build documentation (from `../assets-docs/` and
-  `../assets-branding/` directories)
-  ```bash
-  pixi run docs-assets
-  ```
-- Create mkdocs.yml file
-  ```bash
-  pixi run docs-config
-  ```
-- Build documentation
-  ```bash
-  pixi run docs-build
-  ```
-- Test the documentation locally (built in the `site/` directory). E.g., on
-  macOS, open the site in the default browser via the terminal
-  ```bash
-  open http://127.0.0.1:8000
-  ```
-- Clean up after checking documentation
-  ```bash
-  pixi run docs-clean
-  ```
-
-## Committing and pushing changes
-
-- Commit changes
-  ```bash
-  git add .
-  git commit -m "Add new feature"
-  ```
-- Push the new branch to a remote repository
-  ```bash
-  git push -u origin new-feature
-  ```
-- Create a pull request on
-  [EasyScience GitHub repository](https://github.com/easyscience/diffraction-lib/pulls)
-  and request a review from team members
-- Add one of the required labels:
-  - `[maintainer] auto-pull-request`
-  - `[scope] bug`
-  - `[scope] documentation`
-  - `[scope] enhancement`
-  - `[scope] maintenance`
-  - `[scope] significant`
-- After approval, merge the pull request into the `develop` branch using "Squash
-  and merge" option
-- Delete the branch remotely
-  ```bash
-  git push origin --delete new-feature
-  ```
diff --git a/LICENSE b/LICENSE
index 4debe9f4..c4e3e48e 100644
--- a/LICENSE
+++ b/LICENSE
@@ -1,6 +1,6 @@
 BSD 3-Clause License
 
-Copyright (c) 2021-2025 EasyDiffraction Python Library contributors <https://github.com/easyscience/diffraction-lib>
+Copyright (c) 2021-2026 EasyScience contributors.
 
 Redistribution and use in source and binary forms, with or without
 modification, are permitted provided that the following conditions are met:
diff --git a/README.md b/README.md
index 6278d78f..a9fccc67 100644
--- a/README.md
+++ b/README.md
@@ -9,45 +9,45 @@
   </picture>
 </p>
 
-**EasyDiffraction** is a Python package for calculating neutron powder
-diffraction patterns based on a structural model and refining its parameters
-against experimental data.
+**EasyDiffraction** is a software for calculating neutron powder
+diffraction patterns based on a structural model and refining its
+parameters against experimental data.
 
-**EasyDiffraction** is built upon the [EasyScience] framework, which provides
-essential tools for developing scientific libraries and applications.
+<!-- HOME REPOSITORY SECTION -->
 
-## Useful Links
-
-- [Main Website] - Learn more about EasyDiffraction.
-- [Documentation] - Access the full documentation.
-- [Discussions] - Ask questions or share ideas.
-- [Issue Tracker] - Report bugs or request new features.
-- [Source Code] - Explore the source code repository.
-
-## Contributing
+**EasyDiffraction** is developed both as a Python library and as a
+cross-platform desktop application.
 
-We welcome contributions! Our vision is for **EasyDiffraction** to be a
-community-driven, open-source project supported by a diverse group of
-contributors.
+Here, we focus on the Python library. For the graphical user interface
+(GUI), please see the corresponding
+[GUI resources](https://github.com/easyscience/diffraction-app).
 
-The project is currently maintained by the [European Spallation Source (ESS)].
+License:
+[BSD 3-Clause](https://github.com/easyscience/diffraction-lib/blob/master/LICENSE)
 
-If you'd like to contribute, please refer to our [Contributing Guidelines] for
-information about our code of conduct and instructions on submitting pull
-requests.
-
-## License
-
-**EasyDiffraction** is licensed under the [BSD 3-Clause License].
+## Useful Links
 
-<!-- prettier-ignore-start -->
-[BSD 3-Clause License]: https://github.com/easyscience/diffraction-lib/blob/master/LICENSE
-[Contributing Guidelines]: https://github.com/easyscience/diffraction-lib/blob/master/CONTRIBUTING.md
-[EasyScience]: https://easyscience.software
-[European Spallation Source (ESS)]: https://ess.eu
-[Main Website]: https://easydiffraction.org
-[Documentation]: https://docs.easydiffraction.org/lib
-[Discussions]: https://github.com/easyscience/diffraction-lib/discussions
-[Issue Tracker]: https://github.com/easyscience/diffraction-lib/issues
-[Source Code]: https://github.com/easyscience/diffraction-lib
-<!-- prettier-ignore-end -->
+### For Users
+
+- 📖
+  [Documentation](https://easyscience.github.io/diffraction-lib/latest)
+- 🚀
+  [Getting Started](https://easyscience.github.io/diffraction-lib/latest/introduction)
+- 🧪
+  [Tutorials](https://easyscience.github.io/diffraction-lib/latest/tutorials)
+- 💬
+  [Get in Touch](https://easyscience.github.io/diffraction-lib/latest/introduction/#get-in-touch)
+- 🧾
+  [Citation](https://easyscience.github.io/diffraction-lib/latest/introduction/#citation)
+
+### For Contributors
+
+- 🧑‍💻 [Source Code](https://github.com/easyscience/diffraction-lib)
+- 🐞
+  [Issue Tracker](https://github.com/easyscience/diffraction-lib/issues)
+- 💡
+  [Discussions](https://github.com/easyscience/diffraction-lib/discussions)
+- 🤝
+  [Contributing Guide](https://github.com/easyscience/diffraction-lib/blob/master/CONTRIBUTING.md)
+- 🛡
+  [Code of Conduct](https://github.com/easyscience/.github/blob/master/CODE_OF_CONDUCT.md)
diff --git a/codecov.yml b/codecov.yml
index ffe29da9..f62b13ab 100644
--- a/codecov.yml
+++ b/codecov.yml
@@ -11,8 +11,3 @@ coverage:
       default:
         # Require patch coverage but with threshold
         threshold: 1%
-
-ignore:
-  # Vendored third-party code - not our code to test
-  - 'src/easydiffraction/utils/_vendored/**'
-  - 'src/easydiffraction/utils/_vendored/jupyter_dark_detect/**'
diff --git a/docs/architecture/architecture.md b/docs/architecture/architecture.md
index 3770f3ea..884ed4f1 100644
--- a/docs/architecture/architecture.md
+++ b/docs/architecture/architecture.md
@@ -8,11 +8,11 @@
 
 ## 1. Overview
 
-EasyDiffraction is a Python library for crystallographic diffraction analysis
-(Rietveld refinement, pair-distribution-function fitting, etc.). It models the
-domain using **CIF-inspired abstractions** — datablocks, categories, and
-parameters — while providing a high-level, user-friendly API through a single
-`Project` façade.
+EasyDiffraction is a Python library for crystallographic diffraction
+analysis (Rietveld refinement, pair-distribution-function fitting,
+etc.). It models the domain using **CIF-inspired abstractions** —
+datablocks, categories, and parameters — while providing a high-level,
+user-friendly API through a single `Project` façade.
 
 ### 1.1 Supported Experiment Dimensions
 
@@ -25,8 +25,8 @@ Every experiment is fully described by four orthogonal axes:
 | Beam mode       | constant wavelength, time-of-flight | `BeamModeEnum`       |
 | Radiation probe | neutron, X-ray                      | `RadiationProbeEnum` |
 
-> **Planned extensions:** 1D / 2D data dimensionality, polarised / unpolarised
-> neutron beam.
+> **Planned extensions:** 1D / 2D data dimensionality, polarised /
+> unpolarised neutron beam.
 
 ### 1.2 Calculation Engines
 
@@ -56,50 +56,56 @@ GuardedBase                            # Controlled attribute access, parent lin
 └── DatablockItem                      # CIF data block  (e.g. Structure, Experiment)
 ```
 
-`CollectionBase` provides a unified dict-like API over an ordered item list with
-name-based indexing. All key operations — `__getitem__`, `__setitem__`,
-`__delitem__`, `__contains__`, `remove()` — resolve keys through a single
-`_key_for(item)` method that returns `category_entry_name` for category items or
-`datablock_entry_name` for datablock items. Subclasses `CategoryCollection` and
+`CollectionBase` provides a unified dict-like API over an ordered item
+list with name-based indexing. All key operations — `__getitem__`,
+`__setitem__`, `__delitem__`, `__contains__`, `remove()` — resolve keys
+through a single `_key_for(item)` method that returns
+`category_entry_name` for category items or `datablock_entry_name` for
+datablock items. Subclasses `CategoryCollection` and
 `DatablockCollection` inherit this consistently.
 
 ### 2.2 GuardedBase — Controlled Attribute Access
 
-`GuardedBase` is the root ABC. It enforces that only **declared `@property`
-attributes** are accessible publicly:
+`GuardedBase` is the root ABC. It enforces that only **declared
+`@property` attributes** are accessible publicly:
 
-- **`__getattr__`** rejects any attribute not declared as a `@property` on the
-  class hierarchy. Shows diagnostics with closest-match suggestions on typos.
+- **`__getattr__`** rejects any attribute not declared as a `@property`
+  on the class hierarchy. Shows diagnostics with closest-match
+  suggestions on typos.
 - **`__setattr__`** distinguishes:
   - **Private** (`_`-prefixed) — always allowed, no diagnostics.
-  - **Read-only public** (property without setter) — blocked with a clear error.
-  - **Writable public** (property with setter) — goes through the property
-    setter, which is where validation happens.
-  - **Unknown** — blocked with diagnostics showing allowed writable attrs.
-- **Parent linkage** — when a `GuardedBase` child is assigned to another, the
-  child's `_parent` is set automatically, forming an implicit ownership tree.
-- **Identity** — every instance gets an `_identity: Identity` object for lazy
-  CIF-style name resolution (`datablock_entry_name`, `category_code`,
-  `category_entry_name`) by walking the `_parent` chain.
-
-**Key design rule:** if a parameter has a public setter, it is writable for the
-user. If only a getter — it is read-only. If internal code needs to set it, a
-private method (underscore prefix) is used. See § 2.2.1 below for the full
-pattern.
+  - **Read-only public** (property without setter) — blocked with a
+    clear error.
+  - **Writable public** (property with setter) — goes through the
+    property setter, which is where validation happens.
+  - **Unknown** — blocked with diagnostics showing allowed writable
+    attrs.
+- **Parent linkage** — when a `GuardedBase` child is assigned to
+  another, the child's `_parent` is set automatically, forming an
+  implicit ownership tree.
+- **Identity** — every instance gets an `_identity: Identity` object for
+  lazy CIF-style name resolution (`datablock_entry_name`,
+  `category_code`, `category_entry_name`) by walking the `_parent`
+  chain.
+
+**Key design rule:** if a parameter has a public setter, it is writable
+for the user. If only a getter — it is read-only. If internal code needs
+to set it, a private method (underscore prefix) is used. See § 2.2.1
+below for the full pattern.
 
 #### 2.2.1 Public Property Convention — Editable vs Read-Only
 
-Every public parameter or descriptor exposed on a `GuardedBase` subclass follows
-one of two patterns:
+Every public parameter or descriptor exposed on a `GuardedBase` subclass
+follows one of two patterns:
 
 | Kind          | Getter | Setter | Internal mutation                  |
 | ------------- | ------ | ------ | ---------------------------------- |
 | **Editable**  | yes    | yes    | Via the public setter              |
 | **Read-only** | yes    | no     | Via a private `_set_<name>` method |
 
-**Editable property** — the user can both read and write the value. The setter
-runs through `GuardedBase.__setattr__` and into the property setter, where
-validation happens:
+**Editable property** — the user can both read and write the value. The
+setter runs through `GuardedBase.__setattr__` and into the property
+setter, where validation happens:
 
 ```python
 @property
@@ -113,11 +119,11 @@ def name(self, new: str) -> None:
     self._name = new
 ```
 
-**Read-only property** — the user can read but cannot assign. Any attempt to set
-the attribute is blocked by `GuardedBase.__setattr__` with a clear error
-message. If _internal_ code (factory builders, CIF loaders, etc.) needs to set
-the value, it calls a private `_set_<name>` method instead of exposing a public
-setter:
+**Read-only property** — the user can read but cannot assign. Any
+attempt to set the attribute is blocked by `GuardedBase.__setattr__`
+with a clear error message. If _internal_ code (factory builders, CIF
+loaders, etc.) needs to set the value, it calls a private `_set_<name>`
+method instead of exposing a public setter:
 
 ```python
 @property
@@ -133,12 +139,13 @@ def _set_sample_form(self, value: str) -> None:
 
 **Why this matters:**
 
-- `GuardedBase.__setattr__` uses the presence of a setter to decide writability.
-  Adding a setter "just for internal use" would open the attribute to users.
+- `GuardedBase.__setattr__` uses the presence of a setter to decide
+  writability. Adding a setter "just for internal use" would open the
+  attribute to users.
 - Private `_set_<name>` methods keep the public API surface minimal and
   intention-clear, while remaining greppable and type-safe.
-- The pattern avoids string-based dispatch — every mutator has an explicit named
-  method.
+- The pattern avoids string-based dispatch — every mutator has an
+  explicit named method.
 
 ### 2.3 CategoryItem and CategoryCollection
 
@@ -153,8 +160,8 @@ def _set_sample_form(self, value: str) -> None:
 | Display         | `show()` on concrete subclasses    | `show()` on concrete subclasses           |
 | Building items  | N/A                                | `add(item)`, `create(**kwargs)`           |
 
-**Update priority:** lower values run first. This ensures correct execution
-order within a datablock (e.g. background before data).
+**Update priority:** lower values run first. This ensures correct
+execution order within a datablock (e.g. background before data).
 
 ### 2.4 DatablockItem and DatablockCollection
 
@@ -170,8 +177,9 @@ order within a datablock (e.g. background before data).
 | Dirty flag         | `_need_categories_update`                   | N/A                            |
 
 When any `Parameter.value` is set, it propagates
-`_need_categories_update = True` up to the owning `DatablockItem`. Serialisation
-(`as_cif`) and plotting trigger `_update_categories()` if the flag is set.
+`_need_categories_update = True` up to the owning `DatablockItem`.
+Serialisation (`as_cif`) and plotting trigger `_update_categories()` if
+the flag is set.
 
 ### 2.5 Variable System — Parameters and Descriptors
 
@@ -191,18 +199,19 @@ CIF-bound concrete classes add a `CifHandler` for serialisation:
 | `NumericDescriptor` | `GenericNumericDescriptor` | Read-only or writable number |
 | `Parameter`         | `GenericParameter`         | Fittable numeric value       |
 
-**Initialisation rule:** all Parameters/Descriptors are initialised with their
-default values from `value_spec` (an `AttributeSpec`) **without any validation**
-— we trust internal definitions. Changes go through public property setters,
-which run both type and value validation.
+**Initialisation rule:** all Parameters/Descriptors are initialised with
+their default values from `value_spec` (an `AttributeSpec`) **without
+any validation** — we trust internal definitions. Changes go through
+public property setters, which run both type and value validation.
 
-**Mixin safety:** Parameter/Descriptor classes must not have init arguments so
-they can be used as mixins safely (e.g. `PdTofDataPointMixin`).
+**Mixin safety:** Parameter/Descriptor classes must not have init
+arguments so they can be used as mixins safely (e.g.
+`PdTofDataPointMixin`).
 
 ### 2.6 Validation
 
-`AttributeSpec` bundles `default`, `data_type`, `validator`, `allow_none`.
-Validators include:
+`AttributeSpec` bundles `default`, `data_type`, `validator`,
+`allow_none`. Validators include:
 
 | Validator             | Purpose                                |
 | --------------------- | -------------------------------------- |
@@ -217,13 +226,14 @@ Validators include:
 
 ### 3.1 Experiment Type
 
-An experiment's type is defined by the four enum axes and is **immutable after
-creation**. This avoids the complexity of transforming all internal state when
-the experiment type changes. The type is stored in an `ExperimentType` category
-with four `StringDescriptor`s validated by `MembershipValidator`s. Public
-properties are read-only; factory and CIF-loading code use private setters
-(`_set_sample_form`, `_set_beam_mode`, `_set_radiation_probe`,
-`_set_scattering_type`) during construction only.
+An experiment's type is defined by the four enum axes and is **immutable
+after creation**. This avoids the complexity of transforming all
+internal state when the experiment type changes. The type is stored in
+an `ExperimentType` category with four `StringDescriptor`s validated by
+`MembershipValidator`s. Public properties are read-only; factory and
+CIF-loading code use private setters (`_set_sample_form`,
+`_set_beam_mode`, `_set_radiation_probe`, `_set_scattering_type`) during
+construction only.
 
 ### 3.2 Experiment Hierarchy
 
@@ -245,8 +255,8 @@ Each concrete experiment class carries:
 
 ### 3.3 Category Ownership
 
-Every experiment owns its categories as private attributes with public read-only
-or read-write properties:
+Every experiment owns its categories as private attributes with public
+read-only or read-write properties:
 
 ```python
 # Read-only — user cannot replace the object, only modify its contents
@@ -265,9 +275,10 @@ experiment.excluded_regions_type = 'default'  # triggers ExcludedRegionsFactory.
 experiment.linked_phases_type = 'default'  # triggers LinkedPhasesFactory.create(...)
 ```
 
-**Type switching pattern:** `expt.background_type = 'chebyshev'` rather than
-`expt.background.type = 'chebyshev'`. This keeps the API at the experiment level
-and makes it clear that the entire category object is being replaced.
+**Type switching pattern:** `expt.background_type = 'chebyshev'` rather
+than `expt.background.type = 'chebyshev'`. This keeps the API at the
+experiment level and makes it clear that the entire category object is
+being replaced.
 
 ---
 
@@ -286,8 +297,8 @@ A `Structure` contains three categories:
 - `SpaceGroup` — symmetry information (`CategoryItem`)
 - `AtomSites` — atomic positions collection (`CategoryCollection`)
 
-Symmetry constraints (cell metric, atomic coordinates, ADPs) are applied via the
-`crystallography` module during `_update_categories()`.
+Symmetry constraints (cell metric, atomic coordinates, ADPs) are applied
+via the `crystallography` module during `_update_categories()`.
 
 ---
 
@@ -308,13 +319,13 @@ All factories inherit from `FactoryBase`, which provides:
 | Display            | `show_supported(**filters)`  | Pretty-print table of type + description          |
 | Tag listing        | `supported_tags()`           | List of all registered tags                       |
 
-Each `__init_subclass__` gives every factory its own independent `_registry` and
-`_default_rules`.
+Each `__init_subclass__` gives every factory its own independent
+`_registry` and `_default_rules`.
 
 ### 5.2 Default Rules
 
-`_default_rules` maps frozensets of `(axis_name, enum_value)` tuples to tag
-strings (preferably enum values for type safety):
+`_default_rules` maps frozensets of `(axis_name, enum_value)` tuples to
+tag strings (preferably enum values for type safety):
 
 ```python
 class PeakFactory(FactoryBase):
@@ -333,13 +344,14 @@ class PeakFactory(FactoryBase):
     }
 ```
 
-Resolution uses **largest-subset matching**: the rule whose frozenset is the
-biggest subset of the given conditions wins. `frozenset()` acts as a universal
-fallback.
+Resolution uses **largest-subset matching**: the rule whose frozenset is
+the biggest subset of the given conditions wins. `frozenset()` acts as a
+universal fallback.
 
 ### 5.3 Metadata on Registered Classes
 
-Every `@Factory.register`-ed class carries three frozen dataclass attributes:
+Every `@Factory.register`-ed class carries three frozen dataclass
+attributes:
 
 ```python
 @PeakFactory.register
@@ -365,8 +377,9 @@ class CwlPseudoVoigt(PeakBase, CwlBroadeningMixin):
 
 ### 5.4 Registration Trigger
 
-Concrete classes use `@Factory.register` decorators. To trigger registration,
-each package's `__init__.py` must **explicitly import** every concrete class:
+Concrete classes use `@Factory.register` decorators. To trigger
+registration, each package's `__init__.py` must **explicitly import**
+every concrete class:
 
 ```python
 # datablocks/experiment/categories/background/__init__.py
@@ -397,12 +410,13 @@ from .line_segment import LineSegmentBackground
 | `CalculatorFactory`          | Calculation engines    | `CryspyCalculator`, `CrysfmlCalculator`, `PdffitCalculator` |
 | `MinimizerFactory`           | Minimisers             | `LmfitMinimizer`, `DfolsMinimizer`, …                       |
 
-> **Note:** `ExperimentFactory` and `StructureFactory` are _builder_ factories
-> with `from_cif_path`, `from_cif_str`, `from_data_path`, and `from_scratch`
-> classmethods. `ExperimentFactory` inherits `FactoryBase` and uses `@register`
-> on all four concrete experiment classes; `_resolve_class` looks up the
-> registered class via `default_tag()` + `_supported_map()`. `StructureFactory`
-> is a plain class without `FactoryBase` inheritance (only one structure type
+> **Note:** `ExperimentFactory` and `StructureFactory` are _builder_
+> factories with `from_cif_path`, `from_cif_str`, `from_data_path`, and
+> `from_scratch` classmethods. `ExperimentFactory` inherits
+> `FactoryBase` and uses `@register` on all four concrete experiment
+> classes; `_resolve_class` looks up the registered class via
+> `default_tag()` + `_supported_map()`. `StructureFactory` is a plain
+> class without `FactoryBase` inheritance (only one structure type
 > exists today).
 
 ### 5.6 Tag Naming Convention
@@ -502,9 +516,9 @@ Tags are the user-facing identifiers for selecting types. They must be:
 | `lmfit (least_squares)` | `LmfitMinimizer` (method=`least_squares`) |
 | `dfols`                 | `DfolsMinimizer`                          |
 
-> **Note:** minimizer variant tags (`lmfit (leastsq)`, `lmfit (least_squares)`)
-> are planned but not yet re-implemented after the `FactoryBase` migration. See
-> `issues_open.md` for details.
+> **Note:** minimizer variant tags (`lmfit (leastsq)`,
+> `lmfit (least_squares)`) are planned but not yet re-implemented after
+> the `FactoryBase` migration. See `issues_open.md` for details.
 
 ### 5.7 Metadata Classification — Which Classes Get What
 
@@ -514,16 +528,17 @@ Tags are the user-facing identifiers for selecting types. They must be:
 > `compatibility`, and `calculator_support`.**
 >
 > **If a `CategoryItem` only exists as a child row inside a
-> `CategoryCollection`, it does NOT get these attributes — the collection
-> does.**
+> `CategoryCollection`, it does NOT get these attributes — the
+> collection does.**
 
 #### Rationale
 
-A `LineSegment` item (a single background control point) is never selected,
-created, or queried by a factory. It is always instantiated internally by its
-parent `LineSegmentBackground` collection. The meaningful unit of selection is
-the _collection_, not the item. The user picks "line-segment background" (the
-collection type), not individual line-segment points.
+A `LineSegment` item (a single background control point) is never
+selected, created, or queried by a factory. It is always instantiated
+internally by its parent `LineSegmentBackground` collection. The
+meaningful unit of selection is the _collection_, not the item. The user
+picks "line-segment background" (the collection type), not individual
+line-segment points.
 
 #### Singleton CategoryItems — factory-created (get all three)
 
@@ -601,28 +616,32 @@ collection type), not individual line-segment points.
 
 ### 6.1 Calculator
 
-The calculator performs the actual diffraction computation. It is attached
-per-experiment on the `ExperimentBase` object. Each experiment auto-resolves its
-calculator on first access based on the data category's `calculator_support`
-metadata and `CalculatorFactory._default_rules`. The `CalculatorFactory` filters
-its registry by `engine_imported` (whether the third-party library is available
-in the environment).
+The calculator performs the actual diffraction computation. It is
+attached per-experiment on the `ExperimentBase` object. Each experiment
+auto-resolves its calculator on first access based on the data
+category's `calculator_support` metadata and
+`CalculatorFactory._default_rules`. The `CalculatorFactory` filters its
+registry by `engine_imported` (whether the third-party library is
+available in the environment).
 
 The experiment exposes the standard switchable-category API:
 
-- `calculator` — read-only property (lazy, auto-resolved on first access)
+- `calculator` — read-only property (lazy, auto-resolved on first
+  access)
 - `calculator_type` — getter + setter
-- `show_supported_calculator_types()` — filtered by data category support
+- `show_supported_calculator_types()` — filtered by data category
+  support
 - `show_current_calculator_type()`
 
 ### 6.2 Minimiser
 
-The minimiser drives the optimisation loop. `MinimizerFactory` creates instances
-by tag (e.g. `'lmfit'`, `'dfols'`).
+The minimiser drives the optimisation loop. `MinimizerFactory` creates
+instances by tag (e.g. `'lmfit'`, `'dfols'`).
 
 ### 6.3 Fitter
 
-`Fitter` wraps a minimiser instance and orchestrates the fitting workflow:
+`Fitter` wraps a minimiser instance and orchestrates the fitting
+workflow:
 
 1. Collect `free_parameters` from structures + experiments.
 2. Record start values.
@@ -634,10 +653,12 @@ by tag (e.g. `'lmfit'`, `'dfols'`).
 
 `Analysis` is bound to a `Project` and provides the high-level API:
 
-- Minimiser selection: `current_minimizer`, `show_available_minimizers()`
-- Fit mode: `fit_mode` (`CategoryItem` with a `mode` descriptor validated by
-  `FitModeEnum`); `'single'` fits each experiment independently, `'joint'` fits
-  all simultaneously with weights from `joint_fit_experiments`.
+- Minimiser selection: `current_minimizer`,
+  `show_available_minimizers()`
+- Fit mode: `fit_mode` (`CategoryItem` with a `mode` descriptor
+  validated by `FitModeEnum`); `'single'` fits each experiment
+  independently, `'joint'` fits all simultaneously with weights from
+  `joint_fit_experiments`.
 - Joint-fit weights: `joint_fit_experiments` (`CategoryCollection` of
   per-experiment weight entries); sibling of `fit_mode`, not a child.
 - Parameter tables: `show_all_params()`, `show_fittable_params()`,
@@ -845,26 +866,26 @@ project.experiments['xray_pdf'].peak_profile_type = 'gaussian-damped-sinc'
 
 ### 9.1 Naming and CIF Conventions
 
-- Follow CIF naming conventions where possible. Deviate for better API design
-  when necessary, but keep the spirit of CIF names.
+- Follow CIF naming conventions where possible. Deviate for better API
+  design when necessary, but keep the spirit of CIF names.
 - Reuse the concept of datablocks and categories from CIF.
-- `DatablockItem` = one CIF `data_` block, `DatablockCollection` = set of
-  blocks.
+- `DatablockItem` = one CIF `data_` block, `DatablockCollection` = set
+  of blocks.
 - `CategoryItem` = one CIF category, `CategoryCollection` = CIF loop.
 
 ### 9.2 Immutability of Experiment Type
 
-The experiment type (the four enum axes) can only be set at creation time. It
-cannot be changed afterwards. This avoids the complexity of maintaining
-different state transformations when switching between fundamentally different
-experiment configurations.
+The experiment type (the four enum axes) can only be set at creation
+time. It cannot be changed afterwards. This avoids the complexity of
+maintaining different state transformations when switching between
+fundamentally different experiment configurations.
 
 ### 9.3 Category Type Switching
 
-In contrast to experiment type, categories that have multiple implementations
-(peak profiles, backgrounds, instruments) can be switched at runtime by the
-user. The API pattern uses a type property on the **experiment**, not on the
-category itself:
+In contrast to experiment type, categories that have multiple
+implementations (peak profiles, backgrounds, instruments) can be
+switched at runtime by the user. The API pattern uses a type property on
+the **experiment**, not on the category itself:
 
 ```python
 # ✅ Correct — type property on the experiment
@@ -874,16 +895,16 @@ expt.background_type = 'chebyshev'
 expt.background.type = 'chebyshev'
 ```
 
-This makes it clear that the entire category object is being replaced and
-simplifies maintenance.
+This makes it clear that the entire category object is being replaced
+and simplifies maintenance.
 
 ### 9.4 Switchable-Category Convention
 
-Categories whose concrete implementation can be swapped at runtime (background,
-peak profile, etc.) are called **switchable categories**. **Every category must
-be factory-based** — even if only one implementation exists today. This ensures
-a uniform API, consistent discoverability, and makes adding a second
-implementation trivial.
+Categories whose concrete implementation can be swapped at runtime
+(background, peak profile, etc.) are called **switchable categories**.
+**Every category must be factory-based** — even if only one
+implementation exists today. This ensures a uniform API, consistent
+discoverability, and makes adding a second implementation trivial.
 
 | Facet           | Naming pattern                               | Example                                          |
 | --------------- | -------------------------------------------- | ------------------------------------------------ |
@@ -894,26 +915,31 @@ implementation trivial.
 
 The convention applies universally:
 
-- **Experiment:** `calculator_type`, `background_type`, `peak_profile_type`,
-  `extinction_type`, `linked_crystal_type`, `excluded_regions_type`,
-  `linked_phases_type`, `instrument_type`, `data_type`.
+- **Experiment:** `calculator_type`, `background_type`,
+  `peak_profile_type`, `extinction_type`, `linked_crystal_type`,
+  `excluded_regions_type`, `linked_phases_type`, `instrument_type`,
+  `data_type`.
 - **Structure:** `cell_type`, `space_group_type`, `atom_sites_type`.
 - **Analysis:** `aliases_type`, `constraints_type`, `fit_mode_type`,
   `joint_fit_experiments_type`.
 
 **Design decisions:**
 
-- The **experiment owns** the `_type` setter because switching replaces the
-  entire category object (`self._background = BackgroundFactory.create(...)`).
-- The **experiment owns** the `show_*` methods because they are one-liners that
-  delegate to `Factory.show_supported(...)` and can pass experiment-specific
-  context (e.g. `scattering_type`, `beam_mode` for peak filtering).
-- Concrete category subclasses provide a public `show()` method for displaying
-  the current content (not on the base `CategoryItem`/`CategoryCollection`).
+- The **experiment owns** the `_type` setter because switching replaces
+  the entire category object
+  (`self._background = BackgroundFactory.create(...)`).
+- The **experiment owns** the `show_*` methods because they are
+  one-liners that delegate to `Factory.show_supported(...)` and can pass
+  experiment-specific context (e.g. `scattering_type`, `beam_mode` for
+  peak filtering).
+- Concrete category subclasses provide a public `show()` method for
+  displaying the current content (not on the base
+  `CategoryItem`/`CategoryCollection`).
 
 ### 9.5 Discoverable Supported Options
 
-The user can always discover what is supported for the current experiment:
+The user can always discover what is supported for the current
+experiment:
 
 ```python
 expt.show_supported_peak_profile_types()
@@ -935,36 +961,38 @@ project.analysis.show_supported_joint_fit_experiments_types()
 project.analysis.show_available_minimizers()
 ```
 
-Available calculators are filtered by `engine_imported` (whether the library is
-installed) and by the experiment's data category `calculator_support` metadata.
+Available calculators are filtered by `engine_imported` (whether the
+library is installed) and by the experiment's data category
+`calculator_support` metadata.
 
 ### 9.6 Enums for Finite Value Sets
 
-Every attribute, descriptor, or configuration option that accepts a **finite,
-closed set of values** must be represented by a `(str, Enum)` class. This
-applies to:
+Every attribute, descriptor, or configuration option that accepts a
+**finite, closed set of values** must be represented by a `(str, Enum)`
+class. This applies to:
 
 - Factory tags (§5.6) — e.g. `PeakProfileTypeEnum`, `CalculatorEnum`.
 - Experiment-axis values — e.g. `SampleFormEnum`, `BeamModeEnum`.
 - Category descriptors with enumerated choices — e.g. fit mode
   (`FitModeEnum.SINGLE`, `FitModeEnum.JOINT`).
 
-The enum serves as the **single source of truth** for valid values, their
-user-facing string representations, and their descriptions. Benefits:
+The enum serves as the **single source of truth** for valid values,
+their user-facing string representations, and their descriptions.
+Benefits:
 
-- **Autocomplete and typo safety** — IDEs list valid members; misspellings are
-  caught at assignment time.
-- **Greppable** — searching for `FitModeEnum.JOINT` finds every code path that
-  handles joint fitting.
-- **Type-safe dispatch** — `if mode == FitModeEnum.JOINT:` is checked by type
-  checkers; `if mode == 'joint':` is not.
-- **Consistent validation** — use `MembershipValidator` with the enum members
-  instead of `RegexValidator` with hand-written patterns.
+- **Autocomplete and typo safety** — IDEs list valid members;
+  misspellings are caught at assignment time.
+- **Greppable** — searching for `FitModeEnum.JOINT` finds every code
+  path that handles joint fitting.
+- **Type-safe dispatch** — `if mode == FitModeEnum.JOINT:` is checked by
+  type checkers; `if mode == 'joint':` is not.
+- **Consistent validation** — use `MembershipValidator` with the enum
+  members instead of `RegexValidator` with hand-written patterns.
 
-**Rule:** internal code must compare against enum members, never raw strings.
-User-facing setters accept either the enum member or its string value (because
-`str(EnumMember) == EnumMember.value` for `(str, Enum)`), but internal dispatch
-always uses the enum:
+**Rule:** internal code must compare against enum members, never raw
+strings. User-facing setters accept either the enum member or its string
+value (because `str(EnumMember) == EnumMember.value` for `(str, Enum)`),
+but internal dispatch always uses the enum:
 
 ```python
 # ✅ Correct — compare with enum
@@ -976,10 +1004,10 @@ if self._fit_mode.mode.value == 'joint':
 
 ### 9.7 Flat Category Structure — No Nested Categories
 
-Following CIF conventions, categories are **flat siblings** within their owner
-(datablock or analysis object). A category must never be a child of another
-category of a different type. Categories can reference each other via IDs, but
-the ownership hierarchy is always:
+Following CIF conventions, categories are **flat siblings** within their
+owner (datablock or analysis object). A category must never be a child
+of another category of a different type. Categories can reference each
+other via IDs, but the ownership hierarchy is always:
 
 ```
 Owner (DatablockItem / Analysis)
@@ -999,7 +1027,8 @@ Owner
 **Example — `fit_mode` and `joint_fit_experiments`:** `fit_mode` is a
 `CategoryItem` holding the active strategy (`'single'` or `'joint'`).
 `joint_fit_experiments` is a separate `CategoryCollection` holding
-per-experiment weights. Both are direct children of `Analysis`, not nested:
+per-experiment weights. Both are direct children of `Analysis`, not
+nested:
 
 ```python
 # ✅ Correct — sibling categories on Analysis
@@ -1022,13 +1051,80 @@ npd  0.7
 xrd  0.3
 ```
 
+### 9.8 Property Docstring and Type-Hint Template
+
+Every public property backed by a private `Parameter`,
+`NumericDescriptor`, or `StringDescriptor` attribute must follow the
+template below. The `description` field on the descriptor is the
+**single source of truth**; docstrings and type hints are mechanically
+derived from it.
+
+**Definitions:**
+
+| Symbol    | Meaning                                                                                |
+| --------- | -------------------------------------------------------------------------------------- |
+| `{desc}`  | `description` string without trailing period                                           |
+| `{units}` | `units` string; omit the `({units})` parenthetical when absent/empty                   |
+| `{Type}`  | Descriptor class name: `Parameter`, `NumericDescriptor`, or `StringDescriptor`         |
+| `{ann}`   | Setter value annotation: `float` for numeric descriptors, `str` for string descriptors |
+
+**Template — writable property:**
+
+```python
+@property
+def length_a(self) -> Parameter:
+    """Length of the a axis of the unit cell (Å).
+
+    Reading this property returns the underlying ``Parameter``
+    object. Assigning to it updates the parameter value.
+    """
+    return self._length_a
+
+@length_a.setter
+def length_a(self, value: float) -> None:
+    self._length_a.value = value
+```
+
+**Template — read-only property:**
+
+```python
+@property
+def length_a(self) -> Parameter:
+    """Length of the a axis of the unit cell (Å).
+
+    Reading this property returns the underlying ``Parameter``
+    object.
+    """
+    return self._length_a
+```
+
+**Quick-reference table:**
+
+| Element                | Text                                                                                                           |
+| ---------------------- | -------------------------------------------------------------------------------------------------------------- |
+| Getter summary line    | `"""{desc} ({units}).` (or `"""{desc}.` when unitless)                                                         |
+| Getter body (writable) | `Reading this property returns the underlying ``{Type}`` object. Assigning to it updates the parameter value.` |
+| Getter body (readonly) | `Reading this property returns the underlying ``{Type}`` object.`                                              |
+| Setter docstring       | _(none — not rendered by griffe / MkDocs)_                                                                     |
+| Getter annotation      | `-> {Type}`                                                                                                    |
+| Setter annotation      | `value: {ann}` and `-> None`                                                                                   |
+
+**Notes:**
+
+- Getter docstrings have **no** `Args:` or `Returns:` sections.
+- Setters have **no** docstring.
+- Avoid markdown emphasis (`*a*`) in docstrings; use plain text to stay
+  in sync with the `description` field.
+- The CI tool `pixi run param-consistency-check` validates compliance;
+  `pixi run param-consistency-fix` auto-fixes violations.
+
 ---
 
 ## 10. Issues
 
 - **Open:** [`issues_open.md`](issues_open.md) — prioritised backlog.
-- **Closed:** [`issues_closed.md`](issues_closed.md) — resolved items for
-  reference.
+- **Closed:** [`issues_closed.md`](issues_closed.md) — resolved items
+  for reference.
 
 When a resolution affects the architecture described above, the relevant
 sections of this document are updated accordingly.
diff --git a/docs/architecture/issues_closed.md b/docs/architecture/issues_closed.md
index bc8ea19b..a67edcbe 100644
--- a/docs/architecture/issues_closed.md
+++ b/docs/architecture/issues_closed.md
@@ -6,26 +6,29 @@ Issues that have been fully resolved. Kept for historical reference.
 
 ## Dirty-Flag Guard Was Disabled
 
-**Resolution:** added `_set_value_from_minimizer()` on `GenericDescriptorBase`
-that writes `_value` directly (no validation) but sets the dirty flag on the
-parent `DatablockItem`. Both `LmfitMinimizer` and `DfolsMinimizer` now use it.
-The guard in `DatablockItem._update_categories()` is enabled and skips redundant
-updates on the user-facing path (CIF export, plotting). During fitting the guard
-is bypassed (`called_by_minimizer=True`) because experiment calculations depend
-on structure parameters owned by a different `DatablockItem`.
+**Resolution:** added `_set_value_from_minimizer()` on
+`GenericDescriptorBase` that writes `_value` directly (no validation)
+but sets the dirty flag on the parent `DatablockItem`. Both
+`LmfitMinimizer` and `DfolsMinimizer` now use it. The guard in
+`DatablockItem._update_categories()` is enabled and skips redundant
+updates on the user-facing path (CIF export, plotting). During fitting
+the guard is bypassed (`called_by_minimizer=True`) because experiment
+calculations depend on structure parameters owned by a different
+`DatablockItem`.
 
 ---
 
 ## Move Calculator from Global to Per-Experiment
 
-**Resolution:** removed the global calculator from `Analysis`. Each experiment
-now owns its calculator, auto-resolved on first access from
-`CalculatorFactory._default_rules` (maps `scattering_type` → default tag) and
-filtered by the data category's `calculator_support` metadata (e.g. `PdCwlData`
-→ `{CRYSPY}`, `TotalData` → `{PDFFIT}`). Calculator classes no longer carry
-`compatibility` attributes — limitations are expressed on categories. The
-experiment exposes the standard switchable-category API: `calculator`
-(read-only, lazy), `calculator_type` (getter + setter),
+**Resolution:** removed the global calculator from `Analysis`. Each
+experiment now owns its calculator, auto-resolved on first access from
+`CalculatorFactory._default_rules` (maps `scattering_type` → default
+tag) and filtered by the data category's `calculator_support` metadata
+(e.g. `PdCwlData` → `{CRYSPY}`, `TotalData` → `{PDFFIT}`). Calculator
+classes no longer carry `compatibility` attributes — limitations are
+expressed on categories. The experiment exposes the standard
+switchable-category API: `calculator` (read-only, lazy),
+`calculator_type` (getter + setter),
 `show_supported_calculator_types()`, `show_current_calculator_type()`.
 Tutorials, tests, and docs updated.
 
@@ -33,28 +36,32 @@ Tutorials, tests, and docs updated.
 
 ## Add Universal Factories for All Categories
 
-**Resolution:** converted every category to use the `FactoryBase` pattern. Each
-former single-file category is now a package with `factory.py` (trivial
-`FactoryBase` subclass), `default.py` (concrete class with `@register` +
-`type_info`), and `__init__.py` (re-exports preserving import compatibility).
+**Resolution:** converted every category to use the `FactoryBase`
+pattern. Each former single-file category is now a package with
+`factory.py` (trivial `FactoryBase` subclass), `default.py` (concrete
+class with `@register` + `type_info`), and `__init__.py` (re-exports
+preserving import compatibility).
 
-Experiment categories: `Extinction` → `ShelxExtinction` / `ExtinctionFactory`
-(tag `shelx`), `LinkedCrystal` / `LinkedCrystalFactory` (tag `default`),
-`ExcludedRegions` / `ExcludedRegionsFactory`, `LinkedPhases` /
-`LinkedPhasesFactory`, `ExperimentType` / `ExperimentTypeFactory`.
+Experiment categories: `Extinction` → `ShelxExtinction` /
+`ExtinctionFactory` (tag `shelx`), `LinkedCrystal` /
+`LinkedCrystalFactory` (tag `default`), `ExcludedRegions` /
+`ExcludedRegionsFactory`, `LinkedPhases` / `LinkedPhasesFactory`,
+`ExperimentType` / `ExperimentTypeFactory`.
 
 Structure categories: `Cell` / `CellFactory`, `SpaceGroup` /
 `SpaceGroupFactory`, `AtomSites` / `AtomSitesFactory`.
 
 Analysis categories: `Aliases` / `AliasesFactory`, `Constraints` /
-`ConstraintsFactory`, `JointFitExperiments` / `JointFitExperimentsFactory`.
-
-`ShelxExtinction` and `LinkedCrystal` get the full switchable-category API on
-`ScExperimentBase` (`extinction_type`, `linked_crystal_type` getter+setter,
-`show_supported_*_types()`, `show_current_*_type()`). `ExcludedRegions` and
-`LinkedPhases` get the same API on `PdExperimentBase`. `Cell`, `SpaceGroup`, and
-`AtomSites` get it on `Structure`. `Aliases` and `Constraints` get it on
-`Analysis`. Architecture §3.3, §5.5, §5.7, §9.4, §9.5 updated. Copilot
-instructions updated with universal switchable-category scope and
-architecture-first workflow rule. Unit tests extended with factory tests for
-extinction and linked-crystal.
+`ConstraintsFactory`, `JointFitExperiments` /
+`JointFitExperimentsFactory`.
+
+`ShelxExtinction` and `LinkedCrystal` get the full switchable-category
+API on `ScExperimentBase` (`extinction_type`, `linked_crystal_type`
+getter+setter, `show_supported_*_types()`, `show_current_*_type()`).
+`ExcludedRegions` and `LinkedPhases` get the same API on
+`PdExperimentBase`. `Cell`, `SpaceGroup`, and `AtomSites` get it on
+`Structure`. `Aliases` and `Constraints` get it on `Analysis`.
+Architecture §3.3, §5.5, §5.7, §9.4, §9.5 updated. Copilot instructions
+updated with universal switchable-category scope and architecture-first
+workflow rule. Unit tests extended with factory tests for extinction and
+linked-crystal.
diff --git a/docs/architecture/issues_open.md b/docs/architecture/issues_open.md
index d8bd37a2..05ed175f 100644
--- a/docs/architecture/issues_open.md
+++ b/docs/architecture/issues_open.md
@@ -1,9 +1,10 @@
 # EasyDiffraction — Open Issues
 
-Prioritised list of issues, improvements, and design questions to address. Items
-are ordered by a combination of user impact, blocking potential, and
-implementation readiness. When an item is fully implemented, remove it from this
-file and update `architecture.md` if needed.
+Prioritised list of issues, improvements, and design questions to
+address. Items are ordered by a combination of user impact, blocking
+potential, and implementation readiness. When an item is fully
+implemented, remove it from this file and update `architecture.md` if
+needed.
 
 **Legend:** 🔴 High · 🟡 Medium · 🟢 Low
 
@@ -13,15 +14,16 @@ file and update `architecture.md` if needed.
 
 **Type:** Completeness
 
-`save()` serialises all components to CIF files but `load()` is a stub that
-raises `NotImplementedError`. Users cannot round-trip a project.
+`save()` serialises all components to CIF files but `load()` is a stub
+that raises `NotImplementedError`. Users cannot round-trip a project.
 
 **Why first:** this is the highest-severity gap. Without it the save
-functionality is only half useful — CIF files are written but cannot be read
-back. Tutorials that demonstrate save/load are blocked.
+functionality is only half useful — CIF files are written but cannot be
+read back. Tutorials that demonstrate save/load are blocked.
 
-**Fix:** implement `load()` that reads CIF files from the project directory and
-reconstructs structures, experiments, and analysis settings.
+**Fix:** implement `load()` that reads CIF files from the project
+directory and reconstructs structures, experiments, and analysis
+settings.
 
 **Depends on:** nothing (standalone).
 
@@ -35,11 +37,12 @@ After the `FactoryBase` migration only `'lmfit'` and `'dfols'` remain as
 registered tags. The ability to select a specific lmfit algorithm (e.g.
 `'lmfit (leastsq)'`, `'lmfit (least_squares)'`) raises a `ValueError`.
 
-The root cause is that `FactoryBase` assumes one class ↔ one tag; registering
-the same class twice with different constructor arguments is not supported.
+The root cause is that `FactoryBase` assumes one class ↔ one tag;
+registering the same class twice with different constructor arguments is
+not supported.
 
-**Fix:** decide on an approach (thin subclasses, extended registry, or two-level
-selection) and implement. Thin subclasses is the quickest.
+**Fix:** decide on an approach (thin subclasses, extended registry, or
+two-level selection) and implement. Thin subclasses is the quickest.
 
 **Planned tags:**
 
@@ -58,8 +61,8 @@ selection) and implement. Thin subclasses is the quickest.
 | **B. Extend registry to store `(class, kwargs)` tuples** | No extra classes; factory handles variants natively                    | `_supported_map` changes shape; `TypeInfo` moves from class attribute to registration-time data       |
 | **C. Two-level selection** (`engine` + `algorithm`)      | Clean separation; engine maps to class, algorithm is a constructor arg | More complex API (`current_minimizer = ('lmfit', 'least_squares')`); needs new `FactoryBase` protocol |
 
-**Depends on:** nothing (standalone, but should be decided before more factories
-adopt variants).
+**Depends on:** nothing (standalone, but should be decided before more
+factories adopt variants).
 
 ---
 
@@ -67,13 +70,14 @@ adopt variants).
 
 **Type:** Fragility
 
-`joint_fit_experiments` is created once when `fit_mode` becomes `'joint'`. If
-experiments are added, removed, or renamed afterwards, the weight collection is
-stale. Joint fitting can fail with missing keys or run with incorrect weights.
+`joint_fit_experiments` is created once when `fit_mode` becomes
+`'joint'`. If experiments are added, removed, or renamed afterwards, the
+weight collection is stale. Joint fitting can fail with missing keys or
+run with incorrect weights.
 
-**Fix:** rebuild or validate `joint_fit_experiments` at the start of every joint
-fit. At minimum, `fit()` should assert that the weight keys exactly match
-`project.experiments.names`.
+**Fix:** rebuild or validate `joint_fit_experiments` at the start of
+every joint fit. At minimum, `fit()` should assert that the weight keys
+exactly match `project.experiments.names`.
 
 **Depends on:** nothing.
 
@@ -85,18 +89,20 @@ fit. At minimum, `fit()` should assert that the weight keys exactly match
 
 `ConstraintsHandler` is only synchronised from `analysis.aliases` and
 `analysis.constraints` when the user explicitly calls
-`project.analysis.apply_constraints()`. The normal fit / serialisation path
-calls `constraints_handler.apply()` directly, so newly added or edited aliases
-and constraints can be ignored until that manual sync step happens.
+`project.analysis.apply_constraints()`. The normal fit / serialisation
+path calls `constraints_handler.apply()` directly, so newly added or
+edited aliases and constraints can be ignored until that manual sync
+step happens.
 
-**Why high:** this produces silently incorrect results. A user can define
-constraints, run a fit, and believe they were applied when the active singleton
-still contains stale state from a previous run or no state at all.
+**Why high:** this produces silently incorrect results. A user can
+define constraints, run a fit, and believe they were applied when the
+active singleton still contains stale state from a previous run or no
+state at all.
 
 **Fix:** before any automatic constraint application, always refresh the
-singleton from the current `Aliases` and `Constraints` collections. The sync
-should happen inside `Analysis._update_categories()` or inside the constraints
-category itself, not only in a user-facing helper method.
+singleton from the current `Aliases` and `Constraints` collections. The
+sync should happen inside `Analysis._update_categories()` or inside the
+constraints category itself, not only in a user-facing helper method.
 
 **Depends on:** nothing.
 
@@ -106,10 +112,11 @@ category itself, not only in a user-facing helper method.
 
 **Type:** Consistency
 
-`Analysis` owns categories (`Aliases`, `Constraints`, `JointFitExperiments`) but
-does not extend `DatablockItem`. Its ad-hoc `_update_categories()` iterates over
-a hard-coded list and does not participate in standard category discovery,
-parameter enumeration, or CIF serialisation.
+`Analysis` owns categories (`Aliases`, `Constraints`,
+`JointFitExperiments`) but does not extend `DatablockItem`. Its ad-hoc
+`_update_categories()` iterates over a hard-coded list and does not
+participate in standard category discovery, parameter enumeration, or
+CIF serialisation.
 
 **Fix:** make `Analysis` extend `DatablockItem`, or extract a shared
 `_update_categories()` protocol.
@@ -122,20 +129,22 @@ parameter enumeration, or CIF serialisation.
 
 **Type:** Correctness + Data safety
 
-`Experiment.data_type` currently validates against all registered data tags
-rather than only those compatible with the experiment's `sample_form` /
-`scattering_type` / `beam_mode`. This allows users to switch an experiment to an
-incompatible data collection class. The setter also replaces the existing data
-object with a fresh empty instance, discarding loaded data without warning.
+`Experiment.data_type` currently validates against all registered data
+tags rather than only those compatible with the experiment's
+`sample_form` / `scattering_type` / `beam_mode`. This allows users to
+switch an experiment to an incompatible data collection class. The
+setter also replaces the existing data object with a fresh empty
+instance, discarding loaded data without warning.
 
-**Why high:** the current API can create internally inconsistent experiments and
-silently lose measured data, which is especially dangerous for notebook and
-tutorial workflows.
+**Why high:** the current API can create internally inconsistent
+experiments and silently lose measured data, which is especially
+dangerous for notebook and tutorial workflows.
 
-**Fix:** filter supported data types through `DataFactory.supported_for(...)`
-using the current experiment context, and warn or block when a switch would
-discard existing data. If runtime data-type switching is not a real user need,
-consider making `data` effectively fixed after experiment creation.
+**Fix:** filter supported data types through
+`DataFactory.supported_for(...)` using the current experiment context,
+and warn or block when a switch would discard existing data. If runtime
+data-type switching is not a real user need, consider making `data`
+effectively fixed after experiment creation.
 
 **Depends on:** nothing.
 
@@ -145,16 +154,17 @@ consider making `data` effectively fixed after experiment creation.
 
 **Type:** Fragility
 
-Single-fit mode creates a throw-away `Experiments` collection per experiment,
-manually forces `_parent` via `object.__setattr__`, and passes it to `Fitter`.
-This bypasses `GuardedBase` parent tracking and is fragile.
+Single-fit mode creates a throw-away `Experiments` collection per
+experiment, manually forces `_parent` via `object.__setattr__`, and
+passes it to `Fitter`. This bypasses `GuardedBase` parent tracking and
+is fragile.
 
-**Fix:** make `Fitter.fit()` accept a list of experiment objects (or a single
-experiment) instead of requiring an `Experiments` collection. Or add a
-`fit_single(experiment)` method.
+**Fix:** make `Fitter.fit()` accept a list of experiment objects (or a
+single experiment) instead of requiring an `Experiments` collection. Or
+add a `fit_single(experiment)` method.
 
-**Depends on:** nothing, but simpler after issue 5 (Analysis refactor) clarifies
-the fitting orchestration.
+**Depends on:** nothing, but simpler after issue 5 (Analysis refactor)
+clarifies the fitting orchestration.
 
 ---
 
@@ -162,14 +172,15 @@ the fitting orchestration.
 
 **Type:** API safety
 
-`CategoryCollection.create(**kwargs)` accepts arbitrary keyword arguments and
-applies them via `setattr`. Typos are silently dropped (GuardedBase logs a
-warning but does not raise), so items are created with incorrect defaults.
+`CategoryCollection.create(**kwargs)` accepts arbitrary keyword
+arguments and applies them via `setattr`. Typos are silently dropped
+(GuardedBase logs a warning but does not raise), so items are created
+with incorrect defaults.
 
-**Fix:** concrete collection subclasses (e.g. `AtomSites`, `Background`) should
-override `create()` with explicit parameters for IDE autocomplete and typo
-detection. The base `create(**kwargs)` remains as an internal implementation
-detail.
+**Fix:** concrete collection subclasses (e.g. `AtomSites`, `Background`)
+should override `create()` with explicit parameters for IDE autocomplete
+and typo detection. The base `create(**kwargs)` remains as an internal
+implementation detail.
 
 **Depends on:** nothing.
 
@@ -179,7 +190,8 @@ detail.
 
 **Type:** Design improvement
 
-The four current experiment axes will be extended with at least two more:
+The four current experiment axes will be extended with at least two
+more:
 
 | New axis            | Options                | Enum (proposed)          |
 | ------------------- | ---------------------- | ------------------------ |
@@ -187,12 +199,12 @@ The four current experiment axes will be extended with at least two more:
 | Beam polarisation   | unpolarised, polarised | `PolarisationEnum`       |
 
 These should follow the same `str, Enum` pattern and integrate into
-`Compatibility` (new `FrozenSet` fields), `_default_rules`, and `ExperimentType`
-(new `StringDescriptor`s with `MembershipValidator`s).
+`Compatibility` (new `FrozenSet` fields), `_default_rules`, and
+`ExperimentType` (new `StringDescriptor`s with `MembershipValidator`s).
 
-**Migration path:** existing `Compatibility` objects that don't specify the new
-fields use `frozenset()` (empty = "any"), so all existing classes remain
-compatible without changes.
+**Migration path:** existing `Compatibility` objects that don't specify
+the new fields use `frozenset()` (empty = "any"), so all existing
+classes remain compatible without changes.
 
 **Depends on:** nothing.
 
@@ -202,17 +214,18 @@ compatible without changes.
 
 **Type:** Maintainability
 
-`Project._update_categories(expt_name)` hard-codes the update order (structures
-→ analysis → one experiment). The `_update_priority` system exists on categories
-but is not used across datablocks. The `expt_name` parameter means only one
-experiment is updated per call, inconsistent with joint-fit workflows.
+`Project._update_categories(expt_name)` hard-codes the update order
+(structures → analysis → one experiment). The `_update_priority` system
+exists on categories but is not used across datablocks. The `expt_name`
+parameter means only one experiment is updated per call, inconsistent
+with joint-fit workflows.
 
-**Fix:** consider a project-level `_update_priority` on datablocks, or at
-minimum document the required update order. For joint fitting, all experiments
-should be updateable in a single call.
+**Fix:** consider a project-level `_update_priority` on datablocks, or
+at minimum document the required update order. For joint fitting, all
+experiments should be updateable in a single call.
 
-**Depends on:** benefits from issue 5 (Analysis as DatablockItem) and issue 7
-(fitter refactor).
+**Depends on:** benefits from issue 5 (Analysis as DatablockItem) and
+issue 7 (fitter refactor).
 
 ---
 
@@ -220,17 +233,18 @@ should be updateable in a single call.
 
 **Type:** Maintainability
 
-`_update()` is an optional override with a no-op default. A clearer contract
-would help contributors:
+`_update()` is an optional override with a no-op default. A clearer
+contract would help contributors:
 
-- **Active categories** (those that compute something, e.g. `Background`,
-  `Data`) should have an explicit `_update()` implementation.
+- **Active categories** (those that compute something, e.g.
+  `Background`, `Data`) should have an explicit `_update()`
+  implementation.
 - **Passive categories** (those that only store parameters, e.g. `Cell`,
   `SpaceGroup`) keep the no-op default.
 
 The distinction is already implicit in the code; making it explicit in
-documentation (and possibly via a naming convention or flag) would reduce
-confusion for new contributors.
+documentation (and possibly via a naming convention or flag) would
+reduce confusion for new contributors.
 
 **Depends on:** nothing.
 
@@ -240,10 +254,10 @@ confusion for new contributors.
 
 **Type:** Quality
 
-Ensuring every parameter survives a `save()` → `load()` cycle is critical for
-reproducibility. A systematic integration test that creates a project, populates
-all categories, saves, reloads, and compares all parameter values would
-strengthen confidence in the serialisation layer.
+Ensuring every parameter survives a `save()` → `load()` cycle is
+critical for reproducibility. A systematic integration test that creates
+a project, populates all categories, saves, reloads, and compares all
+parameter values would strengthen confidence in the serialisation layer.
 
 **Depends on:** issue 1 (`Project.load()` implementation).
 
@@ -253,17 +267,18 @@ strengthen confidence in the serialisation layer.
 
 **Type:** Performance
 
-Symmetry constraint application (cell metric, atomic coordinates, ADPs) goes
-through the public `value` setter for each parameter, setting the dirty flag
-repeatedly during what is logically a single batch operation.
+Symmetry constraint application (cell metric, atomic coordinates, ADPs)
+goes through the public `value` setter for each parameter, setting the
+dirty flag repeatedly during what is logically a single batch operation.
 
 No correctness issue — the dirty-flag guard handles this correctly. The
-redundant sets are a minor inefficiency that only matters if profiling shows it
-is a bottleneck.
+redundant sets are a minor inefficiency that only matters if profiling
+shows it is a bottleneck.
 
 **Fix:** introduce a private `_set_value_no_notify()` method on
-`GenericDescriptorBase` for internal batch operations, or a context manager /
-flag on the owning datablock to suppress notifications during a batch.
+`GenericDescriptorBase` for internal batch operations, or a context
+manager / flag on the owning datablock to suppress notifications during
+a batch.
 
 **Depends on:** nothing, but low priority.
 
@@ -273,11 +288,12 @@ flag on the owning datablock to suppress notifications during a batch.
 
 **Type:** Performance
 
-The current dirty-flag approach (`_need_categories_update` on `DatablockItem`)
-triggers a full update of all categories when any parameter changes. This is
-simple and correct. If performance becomes a concern with many categories, a
-more granular approach could track which specific categories are dirty. Only
-implement when profiling proves it is needed.
+The current dirty-flag approach (`_need_categories_update` on
+`DatablockItem`) triggers a full update of all categories when any
+parameter changes. This is simple and correct. If performance becomes a
+concern with many categories, a more granular approach could track which
+specific categories are dirty. Only implement when profiling proves it
+is needed.
 
 **Depends on:** nothing, but low priority.
 
@@ -287,14 +303,16 @@ implement when profiling proves it is needed.
 
 **Type:** Correctness
 
-Joint-fit weights currently allow invalid numeric values such as negatives or an
-all-zero set. The residual code then normalises by the total weight and applies
-`sqrt(weight)`, which can produce division-by-zero or `nan` residuals.
+Joint-fit weights currently allow invalid numeric values such as
+negatives or an all-zero set. The residual code then normalises by the
+total weight and applies `sqrt(weight)`, which can produce
+division-by-zero or `nan` residuals.
 
-**Fix:** require weights to be strictly positive, or at minimum validate that
-all weights are non-negative and their total is greater than zero before
-normalisation. This should fail with a clear user-facing error instead of
-letting invalid floating-point values propagate into the minimiser.
+**Fix:** require weights to be strictly positive, or at minimum validate
+that all weights are non-negative and their total is greater than zero
+before normalisation. This should fail with a clear user-facing error
+instead of letting invalid floating-point values propagate into the
+minimiser.
 
 **Depends on:** related to issue 3, but independent.
 
@@ -304,14 +322,16 @@ letting invalid floating-point values propagate into the minimiser.
 
 **Type:** Completeness
 
-The current architecture moved calculator selection to the experiment level via
-`calculator_type`, but this selection is not written to CIF during `save()` /
-`show_as_cif()`. Reloading or exporting a project therefore loses explicit
-calculator choices and falls back to auto-resolution.
+The current architecture moved calculator selection to the experiment
+level via `calculator_type`, but this selection is not written to CIF
+during `save()` / `show_as_cif()`. Reloading or exporting a project
+therefore loses explicit calculator choices and falls back to
+auto-resolution.
 
-**Fix:** serialise `calculator_type` as part of the experiment or analysis
-state, and make sure `load()` restores it. The saved project should represent
-the exact active calculator configuration, not just a re-derivable default.
+**Fix:** serialise `calculator_type` as part of the experiment or
+analysis state, and make sure `load()` restores it. The saved project
+should represent the exact active calculator configuration, not just a
+re-derivable default.
 
 **Depends on:** issue 1 (`Project.load()` implementation).
 
diff --git a/docs/api-reference/analysis.md b/docs/docs/api-reference/analysis.md
similarity index 100%
rename from docs/api-reference/analysis.md
rename to docs/docs/api-reference/analysis.md
diff --git a/docs/api-reference/core.md b/docs/docs/api-reference/core.md
similarity index 100%
rename from docs/api-reference/core.md
rename to docs/docs/api-reference/core.md
diff --git a/docs/api-reference/crystallography.md b/docs/docs/api-reference/crystallography.md
similarity index 100%
rename from docs/api-reference/crystallography.md
rename to docs/docs/api-reference/crystallography.md
diff --git a/docs/api-reference/datablocks/experiment.md b/docs/docs/api-reference/datablocks/experiment.md
similarity index 100%
rename from docs/api-reference/datablocks/experiment.md
rename to docs/docs/api-reference/datablocks/experiment.md
diff --git a/docs/api-reference/datablocks/structure.md b/docs/docs/api-reference/datablocks/structure.md
similarity index 100%
rename from docs/api-reference/datablocks/structure.md
rename to docs/docs/api-reference/datablocks/structure.md
diff --git a/docs/api-reference/display.md b/docs/docs/api-reference/display.md
similarity index 100%
rename from docs/api-reference/display.md
rename to docs/docs/api-reference/display.md
diff --git a/docs/api-reference/index.md b/docs/docs/api-reference/index.md
similarity index 79%
rename from docs/api-reference/index.md
rename to docs/docs/api-reference/index.md
index 6a6f8be4..351d7f56 100644
--- a/docs/api-reference/index.md
+++ b/docs/docs/api-reference/index.md
@@ -7,19 +7,20 @@ icon: material/code-braces-box
 This section contains the reference detailing the functions and modules
 available in EasyDiffraction:
 
-- [core](core.md) – Contains core utilities and foundational objects used across
-  the package.
-- [crystallography](crystallography.md) – Handles crystallographic calculations,
-  space groups, and symmetry operations.
+- [core](core.md) – Contains core utilities and foundational objects
+  used across the package.
+- [crystallography](crystallography.md) – Handles crystallographic
+  calculations, space groups, and symmetry operations.
 - [utils](utils.md) – Miscellaneous utility functions for formatting,
   decorators, and general helpers.
 - datablocks
-  - [experiments](datablocks/experiment.md) – Manages experimental setups and
-    instrument parameters, as well as the associated diffraction data.
+  - [experiments](datablocks/experiment.md) – Manages experimental
+    setups and instrument parameters, as well as the associated
+    diffraction data.
   - [structures](datablocks/structure.md) – Defines structures, such as
     crystallographic structures, and manages their properties.
 - [display](display.md) – Tools for plotting data and rendering tables.
 - [project](project.md) – Defines the project and manages its state.
-- [analysis](analysis.md) – Provides tools for analyzing diffraction data,
-  including fitting and minimization.
+- [analysis](analysis.md) – Provides tools for analyzing diffraction
+  data, including fitting and minimization.
 - [summary](summary.md) – Provides a summary of the project.
diff --git a/docs/api-reference/io.md b/docs/docs/api-reference/io.md
similarity index 100%
rename from docs/api-reference/io.md
rename to docs/docs/api-reference/io.md
diff --git a/docs/api-reference/project.md b/docs/docs/api-reference/project.md
similarity index 100%
rename from docs/api-reference/project.md
rename to docs/docs/api-reference/project.md
diff --git a/docs/api-reference/summary.md b/docs/docs/api-reference/summary.md
similarity index 100%
rename from docs/api-reference/summary.md
rename to docs/docs/api-reference/summary.md
diff --git a/docs/api-reference/utils.md b/docs/docs/api-reference/utils.md
similarity index 100%
rename from docs/api-reference/utils.md
rename to docs/docs/api-reference/utils.md
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similarity index 100%
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similarity index 100%
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similarity index 100%
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similarity index 100%
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new file mode 100644
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+  --md-footer-fg-color--lighter:    var(--sz-body-text-color--lightmode);        /* E.g. Made with */
+  --md-footer-bg-color:             hsla(0, 0%, 0%, 0.0);                        /* Space with, e.g., Next -> */
+  --md-footer-bg-color--dark:       hsla(0, 0%, 0%, 0.0);                        /* Space with, e.g., © 2022 EasyDiffraction */
+
+  /* Custom colors */
+  --sz-red-color:                   #F44336;
+  --sz-blue-color:                  #03A9F4;
+  --sz-green-color:                 #4CAF50;
+  --sz-orange-color:                #FF9800;
+
+  /* Logo display */
+  --md-footer-logo-dark-mode:       none;
+  --md-footer-logo-light-mode:      block;
+}
+
+/* Dark mode */
+
+/* Default dark mode: https://github.com/squidfunk/mkdocs-material/blob/master/src/assets/stylesheets/palette/_scheme.scss */
+
+[data-md-color-scheme="slate"] {
+
+  /* Primary color shades */
+  --md-primary-fg-color:            var(--sz-body-background-color--darkmode);   /* Navigation background */
+  --md-primary-bg-color:            var(--sz-body-text-color--darkmode);         /* E.g., Header title and icons */
+  --md-primary-bg-color--light:     var(--sz-body-text-color--darkmode);         /* E.g., Header search */
+
+  /* Accent color shades */
+  --md-accent-fg-color:             var(--sz-hovered-link-color--darkmode);      /* E.g., Hovered `a` elements & copy icon in code */
+
+  /* Default color shades */
+  --md-default-fg-color:            var(--sz-body-text-color--darkmode);
+  --md-default-fg-color--light:     var(--sz-body-heading-color--darkmode);      /* E.g., `h1` color & TOC viewed items & `$` in code */
+  --md-default-fg-color--lighter:   var(--sz-body-text-color--darkmode);         /* E.g., `¶` sign near `h1-h8` */
+  --md-default-fg-color--lightest:  var(--sz-body-text-color--darkmode);         /* E.g., Copy icon in code */
+  --md-default-bg-color:            var(--sz-body-background-color--darkmode);
+
+  /* Code color shades */
+  --md-code-bg-color:               var(--sz-code-background-color--darkmode);
+
+  /* Typeset color shades */
+  --md-typeset-color:               var(--sz-body-text-color--darkmode);
+
+  /* Typeset `a` color shades */
+  --md-typeset-a-color:             var(--sz-link-color--darkmode);
+
+  /* Footer color shades */
+  --md-footer-fg-color:             var(--sz-body-text-color--darkmode);         /* E.g., Next -> */
+  --md-footer-fg-color--light:      var(--sz-body-text-color--darkmode);         /* E.g., © 2022 EasyDiffraction, Material for MkDocs */
+  --md-footer-fg-color--lighter:    var(--sz-body-text-color--darkmode);         /* E.g. Made with */
+  --md-footer-bg-color:             hsla(0, 0%, 0%, 0.0);                        /* Space with, e.g., Next -> */
+  --md-footer-bg-color--dark:       hsla(0, 0%, 0%, 0.0);                        /* Space with, e.g., © 2022 EasyDiffraction */
+
+  /* Custom colors */
+  --sz-red-color:                   #EF9A9A;
+  --sz-blue-color:                  #81D4FA;
+  --sz-green-color:                 #A5D6A7;
+  --sz-orange-color:                #FFCC80;
+
+  /* Logo display */
+  --md-footer-logo-dark-mode:       block;
+  --md-footer-logo-light-mode:      none;
+}
+
+/*****************/
+/* Custom styles */
+/*****************/
+
+/* Logo */
+
+#logo_light_mode {
+  display: var(--md-footer-logo-light-mode);
+}
+
+#logo_dark_mode {
+  display: var(--md-footer-logo-dark-mode);
+}
+
+/* Customize default styles of MkDocs Material */
+
+/* Hide navigation title */
+label.md-nav__title[for="__drawer"] {
+  height: 0;
+}
+
+/* Hide site title (first topic) while keeping page title and version selector */
+.md-header__topic:first-child .md-ellipsis {
+  display: none;
+}
+
+/* Increase logo size */
+.md-logo :is(img, svg) {
+  height: 1.8rem !important;
+}
+
+/* Hide GH repo with counts (top right page corner) */
+.md-header__source {
+  display: none;
+}
+
+/* Hide GH repo with counts (navigation bar in mobile view) */
+.md-nav__source {
+  display: none;
+}
+
+/* Ensure all horizontal lines in the navigation list are removed or hidden */
+.md-nav__item {
+  /* Removes any border starting from the second level */
+  border: none !important;
+  /* Modifies the background color to hide the first horizontal line */
+  background-color: var(--md-default-bg-color);
+}
+
+/* Increase TOC (on the right) width */
+.md-nav--secondary {
+  margin-left: -10px;
+  margin-right: -4px;
+}
+
+/* */
+.md-nav__item > .md-nav__link {
+    padding-left: 0.5em; /* Default */
+}
+
+/* Change line height of the tabel cells */
+.md-typeset td,
+.md-typeset th {
+  line-height: 1.25 !important;
+}
+
+/* Change vertical alignment of the icon inside the tabel cells */
+.md-typeset td .twemoji {
+  vertical-align: sub !important;
+}
+
+/* Change the width of the primary sidebar */
+/*
+.md-sidebar--primary {
+  width: 240px;
+}
+*/
+
+/* Change the overall width of the page */
+.md-grid {
+  max-width: 1280px;
+}
+
+/* Needed for mkdocs-jupyter to show download and other buttons on top of the notebook */
+.md-content__button {
+  position: relative !important;
+}
+
+/* Background color of the search input field */
+.md-search__input {
+  background-color: var(--md-code-bg-color) !important;
+}
+
+/* Customize default style of mkdocs-jupyter plugin */
+
+/* Set the width of the notebook to fill 100% and not reduce by the width of .md-content__button's
+Adjust the margins and paddings to fit the defaults in MkDocs Material and do not crop the label in the header
+*/
+.jupyter-wrapper {
+  width: 100% !important;
+  display: flex !important;
+}
+
+.jp-Notebook {
+  padding: 0 !important;
+  margin-top: -3em !important;
+
+  /* Ensure notebook content stretches across the page */
+  width: 100% !important;
+  max-width: 100% !important;
+
+  /* mkdocs-material + some notebook HTML end up as flex */
+  align-items: stretch !important;
+}
+
+.jp-Notebook .jp-Cell {
+  /* Key: flex children often need min-width: 0 to prevent weird shrink */
+  width: 100% !important;
+  max-width: 100% !important;
+  min-width: 0 !important;
+
+  /* Removes jupyter cell paddings */
+  padding-left: 0 !important;
+}
+
+/* Removes jupyter cell prefixes, like In[123]: */
+.prompt,
+.jp-InputPrompt,
+.jp-OutputPrompt {
+  display: none !important;
+}
+
+/* Removes jupyter output cell padding to align with input cell text */
+.jp-RenderedText {
+  padding-left: 0.85em !important;
+}
+
+/* Extra styling the panda dataframes, on top of the style included in the code */
+table.dataframe {
+  float: left;
+  margin-left: 0.75em !important;
+  margin-bottom: 0.5em !important;
+  font-size: var(--jp-code-font-size) !important;
+  color: var(--md-primary-bg-color) !important;
+  /* Allow table cell wrapping in MkDocs-Jupyter outputs */
+  /*
+  table-layout: auto !important;
+  width: auto !important;
+  */
+}
+
+/* Allow wrap for the last column */
+/*
+table.dataframe td:last-child,
+table.dataframe th:last-child {
+  white-space: normal !important;
+  word-break: break-word !important;
+}
+*/
+
+/* Custom styles for the CIF files */
+
+.cif {
+  padding-left: 1em;
+  padding-right: 1em;
+  padding-top: 1px;
+  padding-bottom: 1px;
+  background-color: var(--md-code-bg-color);
+  font-size: small;
+}
+.red {
+  color: var(--sz-red-color);
+}
+.green {
+  color: var(--sz-green-color);
+}
+.blue {
+  color: var(--sz-blue-color);
+}
+.orange {
+  color: var(--sz-orange-color);
+}
+.grey {
+  color: grey;
+}
+
+/**********/
+/* Labels */
+/**********/
+
+.label-cif {
+  padding-top: 0.5ex;
+  padding-bottom: 0.5ex;
+  padding-left: 0.9ex;
+  padding-right: 0.9ex;
+  border-radius: 1ex;
+  color: var(--md-default-fg-color) !important;
+  background-color: var(--md-code-bg-color);
+}
+
+p .label-cif, li .label-cif {
+  vertical-align: 5%;
+  font-size: 12px;
+}
+
+.label-cif:hover {
+  color: white !important;
+}
+
+.label-experiment {
+  padding-top: 0.25ex;
+  padding-bottom: 0.6ex;
+  padding-left: 0.9ex;
+  padding-right: 0.9ex;
+  border-radius: 1ex;
+  color: var(--md-default-fg-color) !important;
+  background-color: rgba(55, 189, 249, 0.1);
+}
+
+p .label-experiment, li .label-experiment {
+  vertical-align: 5%;
+  font-size: 12px;
+}
+
+h1 .label-experiment {
+  padding-top: 0.05ex;
+  padding-bottom: 0.4ex;
+  padding-left: 0.9ex;
+  padding-right: 0.9ex;
+  border-radius: 0.75ex;
+  color: var(--md-default-fg-color) !important;
+  background-color: rgba(55, 189, 249, 0.1);
+}
+
+.label-experiment:hover {
+  color: white !important;
+}
diff --git a/docs/index.md b/docs/docs/index.md
similarity index 53%
rename from docs/index.md
rename to docs/docs/index.md
index a34d3023..73c35423 100644
--- a/docs/index.md
+++ b/docs/docs/index.md
@@ -4,17 +4,18 @@
 
 Here is a brief overview of the main documentation sections:
 
-- [:material-information-slab-circle: Introduction](introduction/index.md) –
-  Provides an overview of EasyDiffraction, including its purpose, licensing,
-  latest release details, and contact information.
-- [:material-cog-box: Installation & Setup](installation-and-setup/index.md) –
-  Guides users through system requirements, environment configuration, and the
-  installation process.
-- [:material-book-open-variant: User Guide](user-guide/index.md) – Covers core
-  concepts, key terminology, workflow steps, and essential parameters for
-  effective use of EasyDiffraction.
+- [:material-information-slab-circle: Introduction](introduction/index.md)
+  – Provides an overview of EasyDiffraction, including its purpose,
+  licensing, latest release details, and contact information.
+- [:material-cog-box: Installation & Setup](installation-and-setup/index.md)
+  – Guides users through system requirements, environment configuration,
+  and the installation process.
+- [:material-book-open-variant: User Guide](user-guide/index.md) –
+  Covers core concepts, key terminology, workflow steps, and essential
+  parameters for effective use of EasyDiffraction.
 - [:material-school: Tutorials](tutorials/index.md) – Offers practical,
-  step-by-step examples demonstrating common workflows and data analysis tasks.
-- [:material-code-braces-box: API Reference](api-reference/index.md) – An
-  auto-generated reference detailing the available functions and modules in
-  EasyDiffraction.
+  step-by-step examples demonstrating common workflows and data analysis
+  tasks.
+- [:material-code-braces-box: API Reference](api-reference/index.md) –
+  An auto-generated reference detailing the available functions and
+  modules in EasyDiffraction.
diff --git a/docs/installation-and-setup/index.md b/docs/docs/installation-and-setup/index.md
similarity index 80%
rename from docs/installation-and-setup/index.md
rename to docs/docs/installation-and-setup/index.md
index 80b64235..0891a55f 100644
--- a/docs/installation-and-setup/index.md
+++ b/docs/docs/installation-and-setup/index.md
@@ -6,16 +6,16 @@ icon: material/cog-box
 
 ## Requirements
 
-EasyDiffraction is a cross-platform Python library compatible with **Python 3.11
-through 3.13**.  
+EasyDiffraction is a cross-platform Python library compatible with
+**Python 3.11 through 3.13**.  
 Make sure Python is installed on your system before proceeding with the
 installation.
 
 ## Environment Setup <small>optional</small> { #environment-setup data-toc-label="Environment Setup" }
 
-We recommend using a **virtual environment** to isolate dependencies and avoid
-conflicts with system-wide packages. If any issues arise, you can simply delete
-and recreate the environment.
+We recommend using a **virtual environment** to isolate dependencies and
+avoid conflicts with system-wide packages. If any issues arise, you can
+simply delete and recreate the environment.
 
 #### Creating and Activating a Virtual Environment:
 
@@ -76,22 +76,23 @@ and recreate the environment.
 
 ### Installing from PyPI <small>recommended</small> { #from-pypi data-toc-label="Installing from PyPI" }
 
-EasyDiffraction is available on **PyPI (Python Package Index)** and can be
-installed using `pip`. We strongly recommend installing it within a virtual
-environment, as described in the [Environment Setup](#environment-setup)
-section.
+EasyDiffraction is available on **PyPI (Python Package Index)** and can
+be installed using `pip`. We strongly recommend installing it within a
+virtual environment, as described in the
+[Environment Setup](#environment-setup) section.
 
 We recommend installing the latest release of EasyDiffraction with the
-`visualization` extras, which include optional dependencies used for simplified
-visualization of charts and tables. This can be especially useful for running
-the Jupyter Notebook examples. To do so, use the following command:
+`visualization` extras, which include optional dependencies used for
+simplified visualization of charts and tables. This can be especially
+useful for running the Jupyter Notebook examples. To do so, use the
+following command:
 
 ```bash
 pip install 'easydiffraction[visualization]'
 ```
 
-If only the core functionality is needed, the library can be installed simply
-with:
+If only the core functionality is needed, the library can be installed
+simply with:
 
 ```bash
 pip install easydiffraction
@@ -117,8 +118,8 @@ pip show easydiffraction
 
 ### Installing from GitHub
 
-Installing unreleased versions is generally not recommended but may be useful
-for testing.
+Installing unreleased versions is generally not recommended but may be
+useful for testing.
 
 To install EasyDiffraction from, e.g., the `develop` branch of GitHub:
 
@@ -134,18 +135,20 @@ pip install 'easydiffraction[visualization] @ git+https://github.com/easyscience
 
 ## How to Run Tutorials
 
-EasyDiffraction includes a collection of **Jupyter Notebook examples** that
-demonstrate key functionality. These tutorials serve as **step-by-step guides**
-to help users understand the diffraction data analysis workflow.
+EasyDiffraction includes a collection of **Jupyter Notebook examples**
+that demonstrate key functionality. These tutorials serve as
+**step-by-step guides** to help users understand the diffraction data
+analysis workflow.
 
 They are available as **static HTML pages** in the
-[:material-school: Tutorials](../tutorials/index.md) section. You can also run
-them interactively in two ways:
+[:material-school: Tutorials](../tutorials/index.md) section. You can
+also run them interactively in two ways:
 
 - **Run Locally** – Download the notebook via the :material-download:
   **Download** button and run it on your computer.
-- **Run Online** – Use the :google-colab: **Open in Google Colab** button to run
-  the tutorial directly in your browser (no setup required).
+- **Run Online** – Use the :google-colab: **Open in Google Colab**
+  button to run the tutorial directly in your browser (no setup
+  required).
 
 !!! note
 
@@ -154,8 +157,9 @@ them interactively in two ways:
 
 ### Run Tutorials Locally
 
-To run tutorials locally, install **Jupyter Notebook** or **JupyterLab**. Here
-are the steps to follow in the case of **Jupyter Notebook**:
+To run tutorials locally, install **Jupyter Notebook** or
+**JupyterLab**. Here are the steps to follow in the case of **Jupyter
+Notebook**:
 
 - Install Jupyter Notebook and IPython kernel:
   ```bash
@@ -177,32 +181,34 @@ are the steps to follow in the case of **Jupyter Notebook**:
   ```bash
   http://localhost:8888/
   ```
-- Open one of the `*.ipynb` files and select the `EasyDiffraction Python kernel`
-  to get started.
+- Open one of the `*.ipynb` files and select the
+  `EasyDiffraction Python kernel` to get started.
 
 ### Run Tutorials via Google Colab
 
-**Google Colab** lets you run Jupyter Notebooks in the cloud without any local
-installation.
+**Google Colab** lets you run Jupyter Notebooks in the cloud without any
+local installation.
 
 To use Google Colab:
 
 - Ensure you have a **Google account**.
-- Go to the **[:material-school: Tutorials](../tutorials/index.md)** section.
-- Click the :google-colab: **Open in Google Colab** button on any tutorial.
+- Go to the **[:material-school: Tutorials](../tutorials/index.md)**
+  section.
+- Click the :google-colab: **Open in Google Colab** button on any
+  tutorial.
 
-This is the fastest way to start experimenting with EasyDiffraction, without
-setting up Python on your system.
+This is the fastest way to start experimenting with EasyDiffraction,
+without setting up Python on your system.
 
 ## Installing with Pixi <small>alternative</small> { #installing-with-pixi data-toc-label="Installing with Pixi" }
 
-[Pixi](https://pixi.sh) is a modern package and environment manager for Python
-and Conda-compatible packages. It simplifies dependency management, environment
-isolation, and reproducibility.
+[Pixi](https://pixi.sh) is a modern package and environment manager for
+Python and Conda-compatible packages. It simplifies dependency
+management, environment isolation, and reproducibility.
 
 The following simple steps provide an alternative setup method for
-EasyDiffraction using Pixi, replacing the traditional virtual environment
-approach.
+EasyDiffraction using Pixi, replacing the traditional virtual
+environment approach.
 
 <!-- prettier-ignore-start -->
 
diff --git a/docs/introduction/index.md b/docs/docs/introduction/index.md
similarity index 90%
rename from docs/introduction/index.md
rename to docs/docs/introduction/index.md
index 2996386b..a2b42b59 100644
--- a/docs/introduction/index.md
+++ b/docs/docs/introduction/index.md
@@ -8,21 +8,22 @@ icon: material/information-slab-circle
 
 **EasyDiffraction** is scientific software for calculating diffraction
 patterns  
-based on structural models and refining model parameters against experimental
-data.
+based on structural models and refining model parameters against
+experimental data.
 
-It is available as both a cross-platform desktop application and a Python
-library.
+It is available as both a cross-platform desktop application and a
+Python library.
 
-This documentation covers the usage of the EasyDiffraction Python library.  
+This documentation covers the usage of the EasyDiffraction Python
+library.  
 For the graphical user interface (GUI) version, refer to the
 [GUI documentation](https://docs.easydiffraction.org/app).
 
 ## EasyScience
 
 EasyDiffraction is developed using the
-[EasyScience framework](https://easyscience.software), which provides tools
-for  
+[EasyScience framework](https://easyscience.software), which provides
+tools for  
 building modular and flexible scientific libraries and applications.
 
 ## License
@@ -35,27 +36,28 @@ EasyDiffraction is released under the
 The latest version of the EasyDiffraction Python library is
 [{{ vars.release_version }}](https://github.com/easyscience/diffraction-lib/releases/latest).
 
-For a complete list of new features, bug fixes, and improvements, see the
+For a complete list of new features, bug fixes, and improvements, see
+the
 [GitHub Releases page](https://github.com/easyscience/diffraction-lib/releases).
 
 ## Citation
 
-If you use EasyDiffraction in your work, please cite the specific version you
-used.
+If you use EasyDiffraction in your work, please cite the specific
+version you used.
 
 All official releases of the EasyDiffraction library are archived on  
 Zenodo, each with a version-specific Digital Object Identifier (DOI).
 
-Citation details in various styles (e.g., APA, MLA) and formats (e.g., BibTeX,
-JSON)  
+Citation details in various styles (e.g., APA, MLA) and formats (e.g.,
+BibTeX, JSON)  
 are available on the
 [Zenodo archive page](https://doi.org/10.5281/zenodo.16806521).
 
 ## Contributing
 
-We welcome contributions from the community! EasyDiffraction is intended to be a
-community-driven, open-source project supported by a diverse group of
-contributors.
+We welcome contributions from the community! EasyDiffraction is intended
+to be a community-driven, open-source project supported by a diverse
+group of contributors.
 
 The project is maintained by the
 [European Spallation Source (ESS)](https://ess.eu).
diff --git a/docs/docs/tutorials/ed-1.ipynb b/docs/docs/tutorials/ed-1.ipynb
new file mode 100644
index 00000000..9b46deb0
--- /dev/null
+++ b/docs/docs/tutorials/ed-1.ipynb
@@ -0,0 +1,203 @@
+{
+ "cells": [
+  {
+   "cell_type": "markdown",
+   "id": "0",
+   "metadata": {},
+   "source": [
+    "# Structure Refinement: LBCO, HRPT\n",
+    "\n",
+    "This minimalistic example is designed to show how Rietveld refinement\n",
+    "can be performed when both the crystal structure and experiment\n",
+    "parameters are defined using CIF files.\n",
+    "\n",
+    "For this example, constant-wavelength neutron powder diffraction data\n",
+    "for La0.5Ba0.5CoO3 from HRPT at PSI is used.\n",
+    "\n",
+    "It does not contain any advanced features or options, and includes no\n",
+    "comments or explanations—these can be found in the other tutorials.\n",
+    "Default values are used for all parameters if not specified. Only\n",
+    "essential and self-explanatory code is provided.\n",
+    "\n",
+    "The example is intended for users who are already familiar with the\n",
+    "EasyDiffraction library and want to quickly get started with a simple\n",
+    "refinement. It is also useful for those who want to see what a\n",
+    "refinement might look like in code. For a more detailed explanation of\n",
+    "the code, please refer to the other tutorials."
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "1",
+   "metadata": {},
+   "source": [
+    "## Import Library"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "2",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "import easydiffraction as ed"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "3",
+   "metadata": {},
+   "source": [
+    "## Step 1: Define Project"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "4",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "# Create minimal project without name and description\n",
+    "project = ed.Project()"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "5",
+   "metadata": {},
+   "source": [
+    "## Step 2: Define Crystal Structure"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "6",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "# Download CIF file from repository\n",
+    "structure_path = ed.download_data(id=1, destination='data')"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "7",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.structures.add_from_cif_path(structure_path)"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "8",
+   "metadata": {},
+   "source": [
+    "## Step 3: Define Experiment"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "9",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "# Download CIF file from repository\n",
+    "expt_path = ed.download_data(id=2, destination='data')"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "10",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.experiments.add_from_cif_path(expt_path)"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "11",
+   "metadata": {},
+   "source": [
+    "## Step 4: Perform Analysis"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "12",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "# Start refinement. All parameters, which have standard uncertainties\n",
+    "# in the input CIF files, are refined by default.\n",
+    "project.analysis.fit()"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "13",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "# Show fit results summary\n",
+    "project.analysis.show_fit_results()"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "14",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.experiments.show_names()"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "15",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.plot_meas_vs_calc(expt_name='hrpt', show_residual=True)"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "16",
+   "metadata": {},
+   "source": [
+    "## Step 5: Show Project Summary"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "17",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.summary.show_report()"
+   ]
+  }
+ ],
+ "metadata": {
+  "jupytext": {
+   "cell_metadata_filter": "-all",
+   "main_language": "python",
+   "notebook_metadata_filter": "-all"
+  }
+ },
+ "nbformat": 4,
+ "nbformat_minor": 5
+}
diff --git a/tutorials/ed-1.py b/docs/docs/tutorials/ed-1.py
similarity index 100%
rename from tutorials/ed-1.py
rename to docs/docs/tutorials/ed-1.py
diff --git a/docs/docs/tutorials/ed-10.ipynb b/docs/docs/tutorials/ed-10.ipynb
new file mode 100644
index 00000000..d6596816
--- /dev/null
+++ b/docs/docs/tutorials/ed-10.ipynb
@@ -0,0 +1,222 @@
+{
+ "cells": [
+  {
+   "cell_type": "markdown",
+   "id": "0",
+   "metadata": {},
+   "source": [
+    "# Pair Distribution Function: Ni, NPD\n",
+    "\n",
+    "This example demonstrates a pair distribution function (PDF) analysis\n",
+    "of Ni, based on data collected from a constant wavelength neutron\n",
+    "powder diffraction experiment.\n",
+    "\n",
+    "The dataset is taken from:\n",
+    "https://github.com/diffpy/cmi_exchange/tree/main/cmi_scripts/fitNiPDF"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "1",
+   "metadata": {},
+   "source": [
+    "## Import Library"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "2",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "import easydiffraction as ed"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "3",
+   "metadata": {},
+   "source": [
+    "## Create Project"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "4",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project = ed.Project()"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "5",
+   "metadata": {},
+   "source": [
+    "## Add Structure"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "6",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.structures.create(name='ni')"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "7",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.structures['ni'].space_group.name_h_m = 'F m -3 m'\n",
+    "project.structures['ni'].space_group.it_coordinate_system_code = '1'\n",
+    "project.structures['ni'].cell.length_a = 3.52387\n",
+    "project.structures['ni'].atom_sites.create(\n",
+    "    label='Ni',\n",
+    "    type_symbol='Ni',\n",
+    "    fract_x=0.0,\n",
+    "    fract_y=0.0,\n",
+    "    fract_z=0.0,\n",
+    "    wyckoff_letter='a',\n",
+    "    b_iso=0.5,\n",
+    ")"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "8",
+   "metadata": {},
+   "source": [
+    "## Add Experiment"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "9",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "data_path = ed.download_data(id=6, destination='data')"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "10",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.experiments.add_from_data_path(\n",
+    "    name='pdf',\n",
+    "    data_path=data_path,\n",
+    "    sample_form='powder',\n",
+    "    beam_mode='constant wavelength',\n",
+    "    radiation_probe='neutron',\n",
+    "    scattering_type='total',\n",
+    ")"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "11",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.experiments['pdf'].linked_phases.create(id='ni', scale=1.0)\n",
+    "project.experiments['pdf'].peak.damp_q = 0\n",
+    "project.experiments['pdf'].peak.broad_q = 0.03\n",
+    "project.experiments['pdf'].peak.cutoff_q = 27.0\n",
+    "project.experiments['pdf'].peak.sharp_delta_1 = 0.0\n",
+    "project.experiments['pdf'].peak.sharp_delta_2 = 2.0\n",
+    "project.experiments['pdf'].peak.damp_particle_diameter = 0"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "12",
+   "metadata": {},
+   "source": [
+    "## Select Fitting Parameters"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "13",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.structures['ni'].cell.length_a.free = True\n",
+    "project.structures['ni'].atom_sites['Ni'].b_iso.free = True"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "14",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.experiments['pdf'].linked_phases['ni'].scale.free = True\n",
+    "project.experiments['pdf'].peak.broad_q.free = True\n",
+    "project.experiments['pdf'].peak.sharp_delta_2.free = True"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "15",
+   "metadata": {},
+   "source": [
+    "## Run Fitting"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "16",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.analysis.fit()\n",
+    "project.analysis.show_fit_results()"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "17",
+   "metadata": {},
+   "source": [
+    "## Plot Measured vs Calculated"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "18",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.plot_meas_vs_calc(expt_name='pdf', show_residual=True)"
+   ]
+  }
+ ],
+ "metadata": {
+  "jupytext": {
+   "cell_metadata_filter": "-all",
+   "main_language": "python",
+   "notebook_metadata_filter": "-all"
+  }
+ },
+ "nbformat": 4,
+ "nbformat_minor": 5
+}
diff --git a/tutorials/ed-10.py b/docs/docs/tutorials/ed-10.py
similarity index 100%
rename from tutorials/ed-10.py
rename to docs/docs/tutorials/ed-10.py
diff --git a/docs/docs/tutorials/ed-11.ipynb b/docs/docs/tutorials/ed-11.ipynb
new file mode 100644
index 00000000..ddacaac7
--- /dev/null
+++ b/docs/docs/tutorials/ed-11.ipynb
@@ -0,0 +1,254 @@
+{
+ "cells": [
+  {
+   "cell_type": "markdown",
+   "id": "0",
+   "metadata": {},
+   "source": [
+    "# Pair Distribution Function: Si, NPD\n",
+    "\n",
+    "This example demonstrates a pair distribution function (PDF) analysis\n",
+    "of Si, based on data collected from a time-of-flight neutron powder\n",
+    "diffraction experiment at NOMAD at SNS."
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "1",
+   "metadata": {},
+   "source": [
+    "## Import Library"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "2",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "import easydiffraction as ed"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "3",
+   "metadata": {},
+   "source": [
+    "## Create Project"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "4",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project = ed.Project()"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "5",
+   "metadata": {},
+   "source": [
+    "## Set Plotting Engine"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "6",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "# Keep the auto-selected engine. Alternatively, you can uncomment the\n",
+    "# line below to explicitly set the engine to the required one.\n",
+    "# project.plotter.engine = 'plotly'"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "7",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "# Set global plot range for plots\n",
+    "project.plotter.x_max = 40"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "8",
+   "metadata": {},
+   "source": [
+    "## Add Structure"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "9",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.structures.create(name='si')"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "10",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "structure = project.structures['si']\n",
+    "structure.space_group.name_h_m.value = 'F d -3 m'\n",
+    "structure.space_group.it_coordinate_system_code = '1'\n",
+    "structure.cell.length_a = 5.43146\n",
+    "structure.atom_sites.create(\n",
+    "    label='Si',\n",
+    "    type_symbol='Si',\n",
+    "    fract_x=0,\n",
+    "    fract_y=0,\n",
+    "    fract_z=0,\n",
+    "    wyckoff_letter='a',\n",
+    "    b_iso=0.5,\n",
+    ")"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "11",
+   "metadata": {},
+   "source": [
+    "## Add Experiment"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "12",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "data_path = ed.download_data(id=5, destination='data')"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "13",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.experiments.add_from_data_path(\n",
+    "    name='nomad',\n",
+    "    data_path=data_path,\n",
+    "    sample_form='powder',\n",
+    "    beam_mode='time-of-flight',\n",
+    "    radiation_probe='neutron',\n",
+    "    scattering_type='total',\n",
+    ")"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "14",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "experiment = project.experiments['nomad']\n",
+    "experiment.linked_phases.create(id='si', scale=1.0)\n",
+    "experiment.peak.damp_q = 0.02\n",
+    "experiment.peak.broad_q = 0.03\n",
+    "experiment.peak.cutoff_q = 35.0\n",
+    "experiment.peak.sharp_delta_1 = 0.0\n",
+    "experiment.peak.sharp_delta_2 = 4.0\n",
+    "experiment.peak.damp_particle_diameter = 0"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "15",
+   "metadata": {},
+   "source": [
+    "## Select Fitting Parameters"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "16",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.structures['si'].cell.length_a.free = True\n",
+    "project.structures['si'].atom_sites['Si'].b_iso.free = True\n",
+    "experiment.linked_phases['si'].scale.free = True"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "17",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "experiment.peak.damp_q.free = True\n",
+    "experiment.peak.broad_q.free = True\n",
+    "experiment.peak.sharp_delta_1.free = True\n",
+    "experiment.peak.sharp_delta_2.free = True"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "18",
+   "metadata": {},
+   "source": [
+    "## Run Fitting"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "19",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.analysis.fit()\n",
+    "project.analysis.show_fit_results()"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "20",
+   "metadata": {},
+   "source": [
+    "## Plot Measured vs Calculated"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "21",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.plot_meas_vs_calc(expt_name='nomad', show_residual=False)"
+   ]
+  }
+ ],
+ "metadata": {
+  "jupytext": {
+   "cell_metadata_filter": "-all",
+   "main_language": "python",
+   "notebook_metadata_filter": "-all"
+  }
+ },
+ "nbformat": 4,
+ "nbformat_minor": 5
+}
diff --git a/tutorials/ed-11.py b/docs/docs/tutorials/ed-11.py
similarity index 100%
rename from tutorials/ed-11.py
rename to docs/docs/tutorials/ed-11.py
diff --git a/docs/docs/tutorials/ed-12.ipynb b/docs/docs/tutorials/ed-12.ipynb
new file mode 100644
index 00000000..a6394390
--- /dev/null
+++ b/docs/docs/tutorials/ed-12.ipynb
@@ -0,0 +1,303 @@
+{
+ "cells": [
+  {
+   "cell_type": "markdown",
+   "id": "0",
+   "metadata": {},
+   "source": [
+    "# Pair Distribution Function: NaCl, XRD\n",
+    "\n",
+    "This example demonstrates a pair distribution function (PDF) analysis\n",
+    "of NaCl, based on data collected from an X-ray powder diffraction\n",
+    "experiment.\n",
+    "\n",
+    "The dataset is taken from:\n",
+    "https://github.com/diffpy/add2019-diffpy-cmi/tree/master"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "1",
+   "metadata": {},
+   "source": [
+    "## Import Library"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "2",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "import easydiffraction as ed"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "3",
+   "metadata": {},
+   "source": [
+    "## Create Project"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "4",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project = ed.Project()"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "5",
+   "metadata": {},
+   "source": [
+    "## Set Plotting Engine"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "6",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "# Keep the auto-selected engine. Alternatively, you can uncomment the\n",
+    "# line below to explicitly set the engine to the required one.\n",
+    "# project.plotter.engine = 'plotly'"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "7",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "# Set global plot range for plots\n",
+    "project.plotter.x_min = 2.0\n",
+    "project.plotter.x_max = 30.0"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "8",
+   "metadata": {},
+   "source": [
+    "## Add Structure"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "9",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.structures.create(name='nacl')"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "10",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.structures['nacl'].space_group.name_h_m = 'F m -3 m'\n",
+    "project.structures['nacl'].space_group.it_coordinate_system_code = '1'\n",
+    "project.structures['nacl'].cell.length_a = 5.62\n",
+    "project.structures['nacl'].atom_sites.create(\n",
+    "    label='Na',\n",
+    "    type_symbol='Na',\n",
+    "    fract_x=0,\n",
+    "    fract_y=0,\n",
+    "    fract_z=0,\n",
+    "    wyckoff_letter='a',\n",
+    "    b_iso=1.0,\n",
+    ")\n",
+    "project.structures['nacl'].atom_sites.create(\n",
+    "    label='Cl',\n",
+    "    type_symbol='Cl',\n",
+    "    fract_x=0.5,\n",
+    "    fract_y=0.5,\n",
+    "    fract_z=0.5,\n",
+    "    wyckoff_letter='b',\n",
+    "    b_iso=1.0,\n",
+    ")"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "11",
+   "metadata": {},
+   "source": [
+    "## Add Experiment"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "12",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "data_path = ed.download_data(id=4, destination='data')"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "13",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.experiments.add_from_data_path(\n",
+    "    name='xray_pdf',\n",
+    "    data_path=data_path,\n",
+    "    sample_form='powder',\n",
+    "    beam_mode='constant wavelength',\n",
+    "    radiation_probe='xray',\n",
+    "    scattering_type='total',\n",
+    ")"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "14",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.experiments['xray_pdf'].show_supported_peak_profile_types()"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "15",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.experiments['xray_pdf'].show_current_peak_profile_type()"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "16",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.experiments['xray_pdf'].peak_profile_type = 'gaussian-damped-sinc'"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "17",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.experiments['xray_pdf'].peak.damp_q = 0.03\n",
+    "project.experiments['xray_pdf'].peak.broad_q = 0\n",
+    "project.experiments['xray_pdf'].peak.cutoff_q = 21\n",
+    "project.experiments['xray_pdf'].peak.sharp_delta_1 = 0\n",
+    "project.experiments['xray_pdf'].peak.sharp_delta_2 = 5\n",
+    "project.experiments['xray_pdf'].peak.damp_particle_diameter = 0"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "18",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.experiments['xray_pdf'].linked_phases.create(id='nacl', scale=0.5)"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "19",
+   "metadata": {},
+   "source": [
+    "## Select Fitting Parameters"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "20",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.structures['nacl'].cell.length_a.free = True\n",
+    "project.structures['nacl'].atom_sites['Na'].b_iso.free = True\n",
+    "project.structures['nacl'].atom_sites['Cl'].b_iso.free = True"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "21",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.experiments['xray_pdf'].linked_phases['nacl'].scale.free = True\n",
+    "project.experiments['xray_pdf'].peak.damp_q.free = True\n",
+    "project.experiments['xray_pdf'].peak.sharp_delta_2.free = True"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "22",
+   "metadata": {},
+   "source": [
+    "## Run Fitting"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "23",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.analysis.fit()\n",
+    "project.analysis.show_fit_results()"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "24",
+   "metadata": {},
+   "source": [
+    "## Plot Measured vs Calculated"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "25",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.plot_meas_vs_calc(expt_name='xray_pdf')"
+   ]
+  }
+ ],
+ "metadata": {
+  "jupytext": {
+   "cell_metadata_filter": "-all",
+   "main_language": "python",
+   "notebook_metadata_filter": "-all"
+  }
+ },
+ "nbformat": 4,
+ "nbformat_minor": 5
+}
diff --git a/tutorials/ed-12.py b/docs/docs/tutorials/ed-12.py
similarity index 100%
rename from tutorials/ed-12.py
rename to docs/docs/tutorials/ed-12.py
diff --git a/docs/docs/tutorials/ed-13.ipynb b/docs/docs/tutorials/ed-13.ipynb
new file mode 100644
index 00000000..d35f3628
--- /dev/null
+++ b/docs/docs/tutorials/ed-13.ipynb
@@ -0,0 +1,2923 @@
+{
+ "cells": [
+  {
+   "cell_type": "markdown",
+   "id": "0",
+   "metadata": {},
+   "source": [
+    "# Fitting Powder Diffraction data\n",
+    "\n",
+    "This notebook guides you through the Rietveld refinement of crystal\n",
+    "structures using simulated powder diffraction data. It consists of two\n",
+    "parts:\n",
+    "- Introduction: A simple reference fit using silicon (Si) crystal\n",
+    "  structure.\n",
+    "- Exercise: A more complex fit using La₀.₅Ba₀.₅CoO₃ (LBCO) crystal\n",
+    "  structure.\n",
+    "\n",
+    "## 🛠️ Import Library\n",
+    "\n",
+    "We start by importing the necessary library for the analysis. In this\n",
+    "notebook, we use the EasyDiffraction library. As mentioned in the\n",
+    "introduction to EasyScience, EasyDiffraction is built on that\n",
+    "framework and offers a high-level interface focused specifically for\n",
+    "diffraction analysis.\n",
+    "\n",
+    "This notebook is self-contained and designed for hands-on learning.\n",
+    "However, if you're interested in exploring more advanced features or\n",
+    "learning about additional capabilities of the EasyDiffraction library,\n",
+    "please refer to the official documentation:\n",
+    "https://docs.easydiffraction.org/lib\n",
+    "\n",
+    "Depending on your requirements, you may choose to import only specific\n",
+    "classes. However, for the sake of simplicity in this notebook, we will\n",
+    "import the entire library."
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "1",
+   "metadata": {
+    "tags": [
+     "doc-link"
+    ]
+   },
+   "source": [
+    "📖 See\n",
+    "[documentation](https://docs.easydiffraction.org/lib/user-guide/first-steps/#importing-easydiffraction)\n",
+    "for more details about importing the EasyDiffraction library and its\n",
+    "components."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "2",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "import easydiffraction as ed"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "3",
+   "metadata": {},
+   "source": [
+    "## 📘 Introduction: Simple Reference Fit – Si\n",
+    "\n",
+    "Before diving into the more complex fitting exercise with the\n",
+    "La₀.₅Ba₀.₅CoO₃ (LBCO) crystal structure, let's start with a simpler\n",
+    "example using the silicon (Si) crystal structure. This will help us\n",
+    "understand the basic concepts and steps involved in fitting a crystal\n",
+    "structure using powder diffraction data.\n",
+    "\n",
+    "For this part of the notebook, we will use the powder diffraction data\n",
+    "previously simulated using the Si crystal structure.\n",
+    "\n",
+    "### 📦 Create a Project – 'reference'\n",
+    "\n",
+    "In EasyDiffraction, a project serves as a container for all\n",
+    "information related to the analysis of a specific experiment or set of\n",
+    "experiments. It enables you to organize your data, experiments,\n",
+    "crystal structures, and fitting parameters in an organized manner. You\n",
+    "can think of it as a folder containing all the essential details about\n",
+    "your analysis. The project also allows us to visualize both the\n",
+    "measured and calculated diffraction patterns, among other things."
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "4",
+   "metadata": {
+    "tags": [
+     "doc-link"
+    ]
+   },
+   "source": [
+    "📖 See\n",
+    "[documentation](https://docs.easydiffraction.org/lib/user-guide/analysis-workflow/project/)\n",
+    "for more details about creating a project and its purpose in the\n",
+    "analysis workflow."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "5",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project_1 = ed.Project(name='reference')"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "6",
+   "metadata": {},
+   "source": [
+    "You can set the title and description of the project to provide\n",
+    "context and information about the analysis being performed. This is\n",
+    "useful for documentation purposes and helps others (or yourself in the\n",
+    "future) understand the purpose of the project at a glance."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "7",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project_1.info.title = 'Reference Silicon Fit'\n",
+    "project_1.info.description = 'Fitting simulated powder diffraction pattern of Si.'"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "8",
+   "metadata": {},
+   "source": [
+    "### 🔬 Create an Experiment\n",
+    "\n",
+    "An experiment represents a specific diffraction measurement performed\n",
+    "on a specific sample using a particular instrument. It contains\n",
+    "details about the measured data, instrument parameters, and other\n",
+    "relevant information."
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "9",
+   "metadata": {
+    "tags": [
+     "doc-link"
+    ]
+   },
+   "source": [
+    "📖 See\n",
+    "[documentation](https://docs.easydiffraction.org/lib/user-guide/analysis-workflow/experiment/)\n",
+    "for more details about experiments and their purpose in the analysis\n",
+    "workflow."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "10",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "data_dir = 'data'\n",
+    "file_name = 'reduced_Si.xye'\n",
+    "si_xye_path = f'{data_dir}/{file_name}'"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "11",
+   "metadata": {},
+   "source": [
+    "Uncomment the following cell if your data reduction failed and the\n",
+    "reduced data file is missing. In this case, you can download our\n",
+    "pre-generated reduced data file from the EasyDiffraction repository.\n",
+    "The `download_data` function will not overwrite an existing file\n",
+    "unless you set `overwrite=True`, so it's safe to run even if the\n",
+    "file is already present."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "12",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "si_xye_path = ed.download_data(id=17, destination=data_dir)"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "13",
+   "metadata": {},
+   "source": [
+    "Now we can create the experiment and load the measured data. In this\n",
+    "case, the experiment is defined as a powder diffraction measurement\n",
+    "using time-of-flight neutrons. The measured data is loaded from a file\n",
+    "containing the reduced diffraction pattern of Si from the data\n",
+    "reduction notebook."
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "14",
+   "metadata": {
+    "tags": [
+     "doc-link"
+    ]
+   },
+   "source": [
+    "📖 See\n",
+    "[documentation](https://docs.easydiffraction.org/lib/user-guide/analysis-workflow/experiment/#defining-an-experiment-manually)\n",
+    "for more details about different types of experiments."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "15",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project_1.experiments.add_from_data_path(\n",
+    "    name='sim_si',\n",
+    "    data_path=si_xye_path,\n",
+    "    sample_form='powder',\n",
+    "    beam_mode='time-of-flight',\n",
+    "    radiation_probe='neutron',\n",
+    ")"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "16",
+   "metadata": {},
+   "source": [
+    "#### Inspect Measured Data\n",
+    "\n",
+    "After creating the experiment, we can examine the measured data. The\n",
+    "measured data consists of a diffraction pattern having time-of-flight\n",
+    "(TOF) values and corresponding intensities. The TOF values are given\n",
+    "in microseconds (μs), and the intensities are in arbitrary units.\n",
+    "\n",
+    "The data is stored in XYE format, a simple text format containing\n",
+    "three columns: TOF, intensity, and intensity error (if available)."
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "17",
+   "metadata": {
+    "tags": [
+     "doc-link"
+    ]
+   },
+   "source": [
+    "📖 See\n",
+    "[documentation](https://docs.easydiffraction.org/lib/user-guide/analysis-workflow/experiment/#measured-data-category)\n",
+    "for more details about the measured data and its format.\n",
+    "\n",
+    "To visualize the measured data, we can use the `plot_meas` method of\n",
+    "the project. Before plotting, we need to set the plotting engine to\n",
+    "'plotly', which provides interactive visualizations."
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "18",
+   "metadata": {
+    "tags": [
+     "doc-link"
+    ]
+   },
+   "source": [
+    "📖 See\n",
+    "[documentation](https://easyscience.github.io/diffraction-lib/user-guide/first-steps/#supported-plotters)\n",
+    "for more details about setting the plotting engine."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "19",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "# Keep the auto-selected engine. Alternatively, you can uncomment the\n",
+    "# line below to explicitly set the engine to the required one.\n",
+    "# project.plotter.engine = 'plotly'"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "20",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project_1.plot_meas(expt_name='sim_si')"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "21",
+   "metadata": {},
+   "source": [
+    "If you zoom in on the highest TOF peak (around 120,000 μs), you will\n",
+    "notice that it has a broad and unusual shape. This distortion, along\n",
+    "with additional effects on the low TOF peaks, is most likely an\n",
+    "artifact related to the simplifications made during the simulation\n",
+    "and/or reduction process and is currently under investigation.\n",
+    "However, this is outside the scope of this school. Therefore, we will\n",
+    "simply exclude both the low and high TOF regions from the analysis by\n",
+    "adding an excluded regions to the experiment.\n",
+    "\n",
+    "In real experiments, it is often necessary to exclude certain regions\n",
+    "from the measured data. For example, the direct beam can significantly\n",
+    "increase the background at very low angles, making those parts of the\n",
+    "diffractogram unreliable. Additionally, sample environment components\n",
+    "may introduce unwanted peaks. In such cases, excluding specific\n",
+    "regions is often simpler and more effective than modeling them with an\n",
+    "additional sample phase."
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "22",
+   "metadata": {
+    "tags": [
+     "doc-link"
+    ]
+   },
+   "source": [
+    "📖 See\n",
+    "[documentation](https://docs.easydiffraction.org/lib/user-guide/analysis-workflow/experiment/#excluded-regions-category)\n",
+    "for more details about excluding regions from the measured data."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "23",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project_1.experiments['sim_si'].excluded_regions.create(id='1', start=0, end=55000)\n",
+    "project_1.experiments['sim_si'].excluded_regions.create(id='2', start=105500, end=200000)"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "24",
+   "metadata": {},
+   "source": [
+    "To visualize the effect of excluding the high TOF region, we can plot\n",
+    "the measured data again. The excluded region will be omitted from the\n",
+    "plot and is not used in the fitting process."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "25",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project_1.plot_meas(expt_name='sim_si')"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "26",
+   "metadata": {},
+   "source": [
+    "#### Set Instrument Parameters\n",
+    "\n",
+    "After the experiment is created and measured data is loaded, we need\n",
+    "to set the instrument parameters.\n",
+    "\n",
+    "In this type of experiment, the instrument parameters define how the\n",
+    "measured data is converted between d-spacing and time-of-flight (TOF)\n",
+    "during the data reduction process as well as the angular position of\n",
+    "the detector. So, we put values based on those from the reduction.\n",
+    "These values can be found in the header of the corresponding .XYE\n",
+    "file. Their names are `two_theta` and `DIFC`, which stand for the\n",
+    "two-theta angle and the linear conversion factor from d-spacing to\n",
+    "TOF, respectively.\n",
+    "\n",
+    "You can set them manually, but it is more convenient to use the\n",
+    "`get_value_from_xye_header` function from the EasyDiffraction library."
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "27",
+   "metadata": {
+    "tags": [
+     "doc-link"
+    ]
+   },
+   "source": [
+    "📖 See\n",
+    "[documentation](https://docs.easydiffraction.org/lib/user-guide/analysis-workflow/experiment/#instrument-category)\n",
+    "for more details about the instrument parameters."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "28",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project_1.experiments['sim_si'].instrument.setup_twotheta_bank = ed.get_value_from_xye_header(\n",
+    "    si_xye_path, 'two_theta'\n",
+    ")\n",
+    "project_1.experiments['sim_si'].instrument.calib_d_to_tof_linear = ed.get_value_from_xye_header(\n",
+    "    si_xye_path, 'DIFC'\n",
+    ")"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "29",
+   "metadata": {},
+   "source": [
+    "Before proceeding, let's take a quick look at the concept of\n",
+    "parameters in EasyDiffraction, which is similar to the parameter\n",
+    "concept in EasyScience. The current version of EasyDiffraction is\n",
+    "transitioning to reuse the parameter system from EasyScience.\n",
+    "\n",
+    "That is, every parameter is an object, which has different attributes,\n",
+    "such as `value`, `units`, etc. To display the parameter of interest,\n",
+    "you can simply print the parameter object.\n",
+    "\n",
+    "For example, to display the linear conversion factor from d-spacing to\n",
+    "TOF, which is the `calib_d_to_tof_linear` parameter, you can do the\n",
+    "following:"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "30",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "print(project_1.experiments['sim_si'].instrument.calib_d_to_tof_linear)"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "31",
+   "metadata": {},
+   "source": [
+    "The `value` attribute represents the current value of the parameter as\n",
+    "a float. You can access it directly by using the `value` attribute of\n",
+    "the parameter. This is useful when you want to use the parameter value\n",
+    "in calculations or when you want to assign it to another parameter.\n",
+    "For example, to get only the value of the same parameter as floating\n",
+    "point number, but not the whole object, you can do the following:"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "32",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "print(project_1.experiments['sim_si'].instrument.calib_d_to_tof_linear.value)"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "33",
+   "metadata": {},
+   "source": [
+    "Note that to set the value of the parameter, you can simply assign a\n",
+    "new value to the parameter object without using the `value` attribute,\n",
+    "as we did above."
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "34",
+   "metadata": {
+    "tags": [
+     "doc-link"
+    ]
+   },
+   "source": [
+    "📖 See\n",
+    "[documentation](https://docs.easydiffraction.org/lib/user-guide/parameters/)\n",
+    "for more details about parameters in EasyDiffraction and their\n",
+    "attributes."
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "35",
+   "metadata": {},
+   "source": [
+    "#### Set Peak Profile Parameters\n",
+    "\n",
+    "The next set of parameters is needed to define the peak profile used\n",
+    "in the fitting process. The peak profile describes the shape of the\n",
+    "diffraction peaks. They include parameters for the broadening and\n",
+    "asymmetry of the peaks.\n",
+    "\n",
+    "There are several commonly used peak profile functions:\n",
+    "- **Gaussian**: Describes peaks with a symmetric bell-shaped curve,\n",
+    "  often used when instrumental broadening dominates. [Click for more\n",
+    "  details.](https://mantidproject.github.io/docs-versioned/v6.1.0/fitting/fitfunctions/Gaussian.html)\n",
+    "- **Lorentzian**: Produces narrower central peaks with longer tails,\n",
+    "  frequently used to model size broadening effects. [Click for more\n",
+    "  details.](https://mantidproject.github.io/docs-versioned/v6.1.0/fitting/fitfunctions/Lorentzian.html)\n",
+    "- **Pseudo-Voigt**: A linear combination of Gaussian and Lorentzian\n",
+    "  components, providing flexibility to represent real diffraction\n",
+    "  peaks. [Click for more\n",
+    "  details.](https://mantidproject.github.io/docs-versioned/v6.1.0/fitting/fitfunctions/PseudoVoigt.html)\n",
+    "- **Pseudo-Voigt convoluted with Ikeda-Carpenter**: Incorporates the\n",
+    "  asymmetry introduced by the neutron pulse shape in time-of-flight\n",
+    "  instruments. This is a common choice for TOF neutron powder\n",
+    "  diffraction data. [Click for more\n",
+    "  details.](https://docs.mantidproject.org/v6.1.0/fitting/fitfunctions/IkedaCarpenterPV.html)\n",
+    "\n",
+    "Here, we use a pseudo-Voigt peak profile function with Ikeda-Carpenter\n",
+    "asymmetry.\n",
+    "\n",
+    "The parameter values are typically determined experimentally on the\n",
+    "same instrument and under the same configuration as the data being\n",
+    "analyzed, using measurements of a standard sample. In our case, the Si\n",
+    "sample serves as this standard reference. We will refine the peak\n",
+    "profile parameters here, and these refined values will be used as\n",
+    "starting points for the more complex fit in the next part of the\n",
+    "notebook. For this initial fit, we will provide reasonable physical\n",
+    "guesses as starting values."
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "36",
+   "metadata": {
+    "tags": [
+     "doc-link"
+    ]
+   },
+   "source": [
+    "📖 See\n",
+    "[documentation](https://docs.easydiffraction.org/lib/user-guide/analysis-workflow/experiment/#peak-category)\n",
+    "for more details about the peak profile types."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "37",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project_1.experiments['sim_si'].peak_profile_type = 'pseudo-voigt * ikeda-carpenter'\n",
+    "project_1.experiments['sim_si'].peak.broad_gauss_sigma_0 = 69498\n",
+    "project_1.experiments['sim_si'].peak.broad_gauss_sigma_1 = -55578\n",
+    "project_1.experiments['sim_si'].peak.broad_gauss_sigma_2 = 14560\n",
+    "project_1.experiments['sim_si'].peak.broad_mix_beta_0 = 0.0019\n",
+    "project_1.experiments['sim_si'].peak.broad_mix_beta_1 = 0.0137\n",
+    "project_1.experiments['sim_si'].peak.asym_alpha_0 = -0.0055\n",
+    "project_1.experiments['sim_si'].peak.asym_alpha_1 = 0.0147"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "38",
+   "metadata": {},
+   "source": [
+    "#### Set Background\n",
+    "\n",
+    "The background of the diffraction pattern represents the portion of\n",
+    "the pattern that is not related to the crystal structure of the\n",
+    "sample. It's rather represents noise and other sources of scattering\n",
+    "that can affect the measured intensities. This includes contributions\n",
+    "from the instrument, the sample holder, the sample environment, and\n",
+    "other sources of incoherent scattering.\n",
+    "\n",
+    "The background can be modeled in various ways. In this example, we\n",
+    "will use a simple line segment background, which is a common approach\n",
+    "for powder diffraction data. The background intensity at any point is\n",
+    "defined by linear interpolation between neighboring points. The\n",
+    "background points are selected to span the range of the diffraction\n",
+    "pattern while avoiding the peaks.\n",
+    "\n",
+    "We will add several background points at specific TOF values (in μs)\n",
+    "and corresponding intensity values. These points are chosen to\n",
+    "represent the background level in the diffraction pattern free from\n",
+    "any peaks.\n",
+    "\n",
+    "The background points are added using the `add` method of the\n",
+    "`background` object. The `x` parameter represents the TOF value, and\n",
+    "the `y` parameter represents the intensity value at that TOF.\n",
+    "\n",
+    "Let's set all the background points at a constant value of 0.01, which\n",
+    "can be roughly estimated by the eye, and we will refine them later\n",
+    "during the fitting process."
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "39",
+   "metadata": {
+    "tags": [
+     "doc-link"
+    ]
+   },
+   "source": [
+    "📖 See\n",
+    "[documentation](https://docs.easydiffraction.org/lib/user-guide/analysis-workflow/experiment/#background-category)\n",
+    "for more details about the background and its types."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "40",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project_1.experiments['sim_si'].background_type = 'line-segment'\n",
+    "project_1.experiments['sim_si'].background.create(id='1', x=50000, y=0.01)\n",
+    "project_1.experiments['sim_si'].background.create(id='2', x=60000, y=0.01)\n",
+    "project_1.experiments['sim_si'].background.create(id='3', x=70000, y=0.01)\n",
+    "project_1.experiments['sim_si'].background.create(id='4', x=80000, y=0.01)\n",
+    "project_1.experiments['sim_si'].background.create(id='5', x=90000, y=0.01)\n",
+    "project_1.experiments['sim_si'].background.create(id='6', x=100000, y=0.01)\n",
+    "project_1.experiments['sim_si'].background.create(id='7', x=110000, y=0.01)"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "41",
+   "metadata": {},
+   "source": [
+    "### 🧩 Create a Structure – Si\n",
+    "\n",
+    "After setting up the experiment, we need to create a structure that\n",
+    "describes the crystal structure of the sample being analyzed.\n",
+    "\n",
+    "In this case, we will create a structure for silicon (Si) with a\n",
+    "cubic crystal structure. The structure contains information about\n",
+    "the space group, lattice parameters, atomic positions of the atoms in\n",
+    "the unit cell, atom types, occupancies and atomic displacement\n",
+    "parameters. The structure is essential for the fitting process, as\n",
+    "it is used to calculate the expected diffraction pattern.\n",
+    "\n",
+    "EasyDiffraction refines the crystal structure of the sample, but does\n",
+    "not solve it. Therefore, we need a good starting point with reasonable\n",
+    "structural parameters.\n",
+    "\n",
+    "Here, we define the Si structure as a cubic structure. As this is a\n",
+    "cubic structure, we only need to define the single lattice parameter,\n",
+    "which is the length of the unit cell edge. The Si crystal structure\n",
+    "has a single atom in the unit cell, which is located at the origin (0,\n",
+    "0, 0) of the unit cell. The symmetry of this site is defined by the\n",
+    "Wyckoff letter 'a'. The atomic displacement parameter defines the\n",
+    "thermal vibrations of the atoms in the unit cell and is presented as\n",
+    "an isotropic parameter (B_iso).\n",
+    "\n",
+    "Sometimes, the initial crystal structure parameters can be obtained\n",
+    "from one of the crystallographic databases, like for example the\n",
+    "Crystallography Open Database (COD). In this case, we use the COD\n",
+    "entry for silicon as a reference for the initial crystal structure\n",
+    "model: https://www.crystallography.net/cod/4507226.html\n",
+    "\n",
+    "Usually, the crystal structure parameters are provided in a CIF file\n",
+    "format, which is a standard format for crystallographic data. An\n",
+    "example of a CIF file for silicon is shown below. The CIF file\n",
+    "contains the space group information, unit cell parameters, and atomic\n",
+    "positions."
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "42",
+   "metadata": {
+    "tags": [
+     "doc-link"
+    ]
+   },
+   "source": [
+    "📖 See\n",
+    "[documentation](https://docs.easydiffraction.org/lib/user-guide/data-format/)\n",
+    "for more details about the CIF format and its use in EasyDiffraction."
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "43",
+   "metadata": {},
+   "source": [
+    "```\n",
+    "data_si\n",
+    "\n",
+    "_space_group.name_H-M_alt  \"F d -3 m\"\n",
+    "_space_group.IT_coordinate_system_code  2\n",
+    "\n",
+    "_cell.length_a      5.43\n",
+    "_cell.length_b      5.43\n",
+    "_cell.length_c      5.43\n",
+    "_cell.angle_alpha  90.0\n",
+    "_cell.angle_beta   90.0\n",
+    "_cell.angle_gamma  90.0\n",
+    "\n",
+    "loop_\n",
+    "_atom_site.label\n",
+    "_atom_site.type_symbol\n",
+    "_atom_site.fract_x\n",
+    "_atom_site.fract_y\n",
+    "_atom_site.fract_z\n",
+    "_atom_site.wyckoff_letter\n",
+    "_atom_site.occupancy\n",
+    "_atom_site.ADP_type\n",
+    "_atom_site.B_iso_or_equiv\n",
+    "Si Si   0 0 0   a  1.0   Biso 0.89\n",
+    "```"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "44",
+   "metadata": {},
+   "source": [
+    "As with adding the experiment in the previous step, we will create a\n",
+    "default structure and then modify its parameters to match the Si\n",
+    "structure."
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "45",
+   "metadata": {
+    "tags": [
+     "doc-link"
+    ]
+   },
+   "source": [
+    "📖 See\n",
+    "[documentation](https://docs.easydiffraction.org/lib/user-guide/analysis-workflow/structure/)\n",
+    "for more details about structures and their purpose in the data\n",
+    "analysis workflow."
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "46",
+   "metadata": {},
+   "source": [
+    "#### Add Structure"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "47",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project_1.structures.create(name='si')"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "48",
+   "metadata": {},
+   "source": [
+    "#### Set Space Group"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "49",
+   "metadata": {
+    "tags": [
+     "doc-link"
+    ]
+   },
+   "source": [
+    "📖 See\n",
+    "[documentation](https://docs.easydiffraction.org/lib/user-guide/analysis-workflow/structure/#space-group-category)\n",
+    "for more details about the space group."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "50",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project_1.structures['si'].space_group.name_h_m = 'F d -3 m'\n",
+    "project_1.structures['si'].space_group.it_coordinate_system_code = '2'"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "51",
+   "metadata": {},
+   "source": [
+    "#### Set Lattice Parameters"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "52",
+   "metadata": {
+    "tags": [
+     "doc-link"
+    ]
+   },
+   "source": [
+    "📖 See\n",
+    "[documentation](https://docs.easydiffraction.org/lib/user-guide/analysis-workflow/structure/#cell-category)\n",
+    "for more details about the unit cell parameters."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "53",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project_1.structures['si'].cell.length_a = 5.43"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "54",
+   "metadata": {},
+   "source": [
+    "#### Set Atom Sites"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "55",
+   "metadata": {
+    "tags": [
+     "doc-link"
+    ]
+   },
+   "source": [
+    "📖 See\n",
+    "[documentation](https://docs.easydiffraction.org/lib/user-guide/analysis-workflow/structure/#atom-sites-category)\n",
+    "for more details about the atom sites category."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "56",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project_1.structures['si'].atom_sites.create(\n",
+    "    label='Si',\n",
+    "    type_symbol='Si',\n",
+    "    fract_x=0,\n",
+    "    fract_y=0,\n",
+    "    fract_z=0,\n",
+    "    wyckoff_letter='a',\n",
+    "    b_iso=0.89,\n",
+    ")"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "57",
+   "metadata": {},
+   "source": [
+    "### 🔗 Assign Structure to Experiment\n",
+    "\n",
+    "Now we need to assign, or link, this structure to the experiment\n",
+    "created above. This linked crystallographic phase will be used to\n",
+    "calculate the expected diffraction pattern based on the crystal\n",
+    "structure defined in the structure."
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "58",
+   "metadata": {
+    "tags": [
+     "doc-link"
+    ]
+   },
+   "source": [
+    "📖 See\n",
+    "[documentation](https://docs.easydiffraction.org/lib/user-guide/analysis-workflow/experiment/#linked-phases-category)\n",
+    "for more details about linking a structure to an experiment."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "59",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project_1.experiments['sim_si'].linked_phases.create(id='si', scale=1.0)"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "60",
+   "metadata": {},
+   "source": [
+    "### 🚀 Analyze and Fit the Data\n",
+    "\n",
+    "After setting up the experiment and structure, we can now analyze\n",
+    "the measured diffraction pattern and perform the fit. Building on the\n",
+    "analogies from the EasyScience library and the previous notebooks, we\n",
+    "can say that all the parameters we introduced earlier — those defining\n",
+    "the structure (crystal structure parameters) and the experiment\n",
+    "(instrument, background, and peak profile parameters) — together form\n",
+    "the complete set of parameters that can be refined during the fitting\n",
+    "process.\n",
+    "\n",
+    "Unlike in the previous analysis notebooks, we will not create a\n",
+    "**math_model** object here. The mathematical model used to calculate\n",
+    "the expected diffraction pattern is already defined in the library and\n",
+    "will be applied automatically during the fitting process."
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "61",
+   "metadata": {
+    "title": "**Reminder:**"
+   },
+   "source": [
+    "\n",
+    "The fitting process involves comparing the measured diffraction\n",
+    "pattern with the calculated diffraction pattern based on the crystal\n",
+    "structure and instrument parameters. The goal is to adjust the\n",
+    "parameters of the structure and the experiment to minimize the\n",
+    "difference between the measured and calculated diffraction patterns.\n",
+    "This is done by refining the parameters of the structure and the\n",
+    "instrument settings to achieve a better fit."
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "62",
+   "metadata": {
+    "tags": [
+     "doc-link"
+    ]
+   },
+   "source": [
+    "📖 See\n",
+    "[documentation](https://docs.easydiffraction.org/lib/user-guide/analysis-workflow/analysis/#minimization-optimization)\n",
+    "for more details about the fitting process in EasyDiffraction."
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "63",
+   "metadata": {},
+   "source": [
+    "#### Set Fit Parameters\n",
+    "\n",
+    "To perform the fit, we need to specify the refinement parameters.\n",
+    "These are the parameters that will be adjusted during the fitting\n",
+    "process to minimize the difference between the measured and calculated\n",
+    "diffraction patterns. This is done by setting the `free` attribute of\n",
+    "the corresponding parameters to `True`.\n",
+    "\n",
+    "Note: setting `param.free = True` is equivalent to using `param.fixed\n",
+    "= False` in the EasyScience library.\n",
+    "\n",
+    "We will refine the scale factor of the Si phase, the intensities of\n",
+    "the background points as well as the peak profile parameters. The\n",
+    "structure parameters of the Si phase will not be refined, as this\n",
+    "sample is considered a reference sample with known parameters."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "64",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project_1.experiments['sim_si'].linked_phases['si'].scale.free = True\n",
+    "\n",
+    "for line_segment in project_1.experiments['sim_si'].background:\n",
+    "    line_segment.y.free = True\n",
+    "\n",
+    "project_1.experiments['sim_si'].peak.broad_gauss_sigma_0.free = True\n",
+    "project_1.experiments['sim_si'].peak.broad_gauss_sigma_1.free = True\n",
+    "project_1.experiments['sim_si'].peak.broad_gauss_sigma_2.free = True\n",
+    "project_1.experiments['sim_si'].peak.broad_mix_beta_0.free = True\n",
+    "project_1.experiments['sim_si'].peak.broad_mix_beta_1.free = True\n",
+    "project_1.experiments['sim_si'].peak.asym_alpha_0.free = True\n",
+    "project_1.experiments['sim_si'].peak.asym_alpha_1.free = True"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "65",
+   "metadata": {},
+   "source": [
+    "#### Show Free Parameters\n",
+    "\n",
+    "We can check which parameters are free to be refined by calling the\n",
+    "`show_free_params` method of the `analysis` object of the project."
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "66",
+   "metadata": {
+    "tags": [
+     "doc-link"
+    ]
+   },
+   "source": [
+    "📖 See\n",
+    "[documentation](https://easyscience.github.io/diffraction-lib/user-guide/first-steps/#available-parameters)\n",
+    "for more details on how to\n",
+    "- show all parameters of the project,\n",
+    "- show all fittable parameters, and\n",
+    "- show only free parameters of the project."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "67",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project_1.analysis.show_free_params()"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "68",
+   "metadata": {},
+   "source": [
+    "#### Visualize Diffraction Patterns\n",
+    "\n",
+    "Before performing the fit, we can visually compare the measured\n",
+    "diffraction pattern with the calculated diffraction pattern based on\n",
+    "the initial parameters of the structure and the instrument. This\n",
+    "provides an indication of how well the initial parameters match the\n",
+    "measured data. The `plot_meas_vs_calc` method of the project allows\n",
+    "this comparison."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "69",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project_1.plot_meas_vs_calc(expt_name='sim_si')"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "70",
+   "metadata": {},
+   "source": [
+    "#### Run Fitting\n",
+    "\n",
+    "We can now perform the fit using the `fit` method of the `analysis`\n",
+    "object of the project."
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "71",
+   "metadata": {
+    "tags": [
+     "doc-link"
+    ]
+   },
+   "source": [
+    "📖 See\n",
+    "[documentation](https://docs.easydiffraction.org/lib/user-guide/analysis-workflow/analysis/#perform-fit)\n",
+    "for more details about the fitting process."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "72",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project_1.analysis.fit()\n",
+    "project_1.analysis.show_fit_results()"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "73",
+   "metadata": {},
+   "source": [
+    "#### Check Fit Results\n",
+    "\n",
+    "You can see that the agreement between the measured and calculated\n",
+    "diffraction patterns is now much improved and that the intensities of\n",
+    "the calculated peaks align much better with the measured peaks. To\n",
+    "check the quality of the fit numerically, we can look at the\n",
+    "goodness-of-fit χ² value and the reliability R-factors. The χ² value\n",
+    "is a measure of how well the calculated diffraction pattern matches\n",
+    "the measured pattern, and it is calculated as the sum of the squared\n",
+    "differences between the measured and calculated intensities, divided\n",
+    "by the number of data points. Ideally, the χ² value should be close to\n",
+    "1, indicating a good fit."
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "74",
+   "metadata": {},
+   "source": [
+    "#### Visualize Fit Results\n",
+    "\n",
+    "After the fit is completed, we can plot the comparison between the\n",
+    "measured and calculated diffraction patterns again to see how well the\n",
+    "fit improved the agreement between the two. The calculated diffraction\n",
+    "pattern is now based on the refined parameters."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "75",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project_1.plot_meas_vs_calc(expt_name='sim_si')"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "76",
+   "metadata": {},
+   "source": [
+    "#### TOF vs d-spacing\n",
+    "\n",
+    "The diffraction pattern is typically analyzed and plotted in the\n",
+    "time-of-flight (TOF) axis, which represents the time it takes for\n",
+    "neutrons to travel from the sample to the detector. However, it is\n",
+    "sometimes more convenient to visualize the diffraction pattern in the\n",
+    "d-spacing axis, which represents the distance between planes in the\n",
+    "crystal lattice.\n",
+    "\n",
+    "The conversion from d-spacing to TOF was already introduced in the\n",
+    "data reduction notebook. As a reminder, the two are related through\n",
+    "the instrument calibration parameters according to the equation:\n",
+    "\n",
+    "$$ \\text{TOF} = \\text{offset} + \\text{linear} \\cdot d + \\text{quad}\n",
+    "\\cdot d^{2}, $$\n",
+    "\n",
+    "where `offset`, `linear`, and `quad` are calibration parameters.\n",
+    "\n",
+    "In our case, only the `linear` term is used (the\n",
+    "`calib_d_to_tof_linear` parameter we set earlier). The `offset` and\n",
+    "`quad` terms were not part of the data reduction and are therefore set\n",
+    "to 0 by default.\n",
+    "\n",
+    "The `plot_meas_vs_calc` method of the project allows us to plot the\n",
+    "measured and calculated diffraction patterns in the d-spacing axis by\n",
+    "setting the `d_spacing` parameter to `True`."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "77",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project_1.plot_meas_vs_calc(expt_name='sim_si', x='d_spacing')"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "78",
+   "metadata": {},
+   "source": [
+    "As you can see, the calculated diffraction pattern now matches the\n",
+    "measured pattern much more closely. Typically, additional experimental\n",
+    "parameters are included in the refinement process to further improve\n",
+    "the fit. In this example, the structural parameters are not refined\n",
+    "because the Si crystal structure is a well-known standard reference\n",
+    "used to calibrate both the instrument and the experimental setup. The\n",
+    "refined experimental parameters obtained here will then be applied\n",
+    "when fitting the crystal structures of other materials.\n",
+    "\n",
+    "In the next part of the notebook, we will move to a more advanced case\n",
+    "and fit a more complex crystal structure: La₀.₅Ba₀.₅CoO₃ (LBCO).\n",
+    "\n",
+    "#### Save Project\n",
+    "\n",
+    "Before moving on, we can save the project to disk for later use. This\n",
+    "will preserve the entire project structure, including experiments,\n",
+    "structures, and fitting results. The project is saved into a\n",
+    "directory specified by the `dir_path` attribute of the project object."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "79",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project_1.save_as(dir_path='powder_diffraction_Si')"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "80",
+   "metadata": {},
+   "source": [
+    "## 💪 Exercise: Complex Fit – LBCO\n",
+    "\n",
+    "Now that you have a basic understanding of the fitting process, we\n",
+    "will undertake a more complex fit of the La₀.₅Ba₀.₅CoO₃ (LBCO) crystal\n",
+    "structure using simulated powder diffraction data from the data\n",
+    "reduction notebook.\n",
+    "\n",
+    "You can use the same approach as in the previous part of the notebook,\n",
+    "but this time we will refine a more complex crystal structure LBCO\n",
+    "with multiple atoms in the unit cell.\n",
+    "\n",
+    "### 📦 Exercise 1: Create a Project\n",
+    "\n",
+    "Create a new project for the LBCO fit."
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "81",
+   "metadata": {},
+   "source": [
+    "**Hint:**"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "82",
+   "metadata": {
+    "tags": [
+     "dmsc-school-hint"
+    ]
+   },
+   "source": [
+    "You can use the same approach as in the previous part of the notebook,\n",
+    "but this time we will create a new project for the LBCO fit."
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "83",
+   "metadata": {},
+   "source": [
+    "**Solution:**"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "84",
+   "metadata": {
+    "tags": [
+     "solution",
+     "hide-input"
+    ]
+   },
+   "outputs": [],
+   "source": [
+    "project_2 = ed.Project(name='main')\n",
+    "project_2.info.title = 'La0.5Ba0.5CoO3 Fit'\n",
+    "project_2.info.description = 'Fitting simulated powder diffraction pattern of La0.5Ba0.5CoO3.'"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "85",
+   "metadata": {},
+   "source": [
+    "### 🔬 Exercise 2: Define an Experiment\n",
+    "\n",
+    "#### Exercise 2.1: Create an Experiment\n",
+    "\n",
+    "Create an experiment within the new project and load the reduced\n",
+    "diffraction pattern for LBCO."
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "86",
+   "metadata": {},
+   "source": [
+    "**Hint:**"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "87",
+   "metadata": {
+    "tags": [
+     "dmsc-school-hint"
+    ]
+   },
+   "source": [
+    "You can use the same approach as in the previous part of the notebook,\n",
+    "but this time you need to use the data file for LBCO."
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "88",
+   "metadata": {},
+   "source": [
+    "**Solution:**"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "89",
+   "metadata": {
+    "tags": [
+     "solution",
+     "hide-input"
+    ]
+   },
+   "outputs": [],
+   "source": [
+    "data_dir = 'data'\n",
+    "file_name = 'reduced_LBCO.xye'\n",
+    "lbco_xye_path = f'{data_dir}/{file_name}'\n",
+    "\n",
+    "# Uncomment the following line if your data reduction failed and the\n",
+    "# reduced data file is missing.\n",
+    "lbco_xye_path = ed.download_data(id=18, destination=data_dir)\n",
+    "\n",
+    "project_2.experiments.add_from_data_path(\n",
+    "    name='sim_lbco',\n",
+    "    data_path=lbco_xye_path,\n",
+    "    sample_form='powder',\n",
+    "    beam_mode='time-of-flight',\n",
+    "    radiation_probe='neutron',\n",
+    ")"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "90",
+   "metadata": {},
+   "source": [
+    "#### Exercise 2.1: Inspect Measured Data\n",
+    "\n",
+    "Check the measured data of the LBCO experiment. Are there any peaks\n",
+    "with the shape similar to those excluded in the Si fit? If so, exclude\n",
+    "them from this analysis as well."
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "91",
+   "metadata": {},
+   "source": [
+    "**Hint:**"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "92",
+   "metadata": {
+    "tags": [
+     "dmsc-school-hint"
+    ]
+   },
+   "source": [
+    "You can use the `plot_meas` method of the project to visualize the\n",
+    "measured diffraction pattern. You can also use the `excluded_regions`\n",
+    "attribute of the experiment to exclude specific regions from the\n",
+    "analysis as we did in the previous part of the notebook."
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "93",
+   "metadata": {},
+   "source": [
+    "**Solution:**"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "94",
+   "metadata": {
+    "tags": [
+     "solution",
+     "hide-input"
+    ]
+   },
+   "outputs": [],
+   "source": [
+    "project_2.plot_meas(expt_name='sim_lbco')\n",
+    "\n",
+    "project_2.experiments['sim_lbco'].excluded_regions.create(id='1', start=0, end=55000)\n",
+    "project_2.experiments['sim_lbco'].excluded_regions.create(id='2', start=105500, end=200000)\n",
+    "\n",
+    "project_2.plot_meas(expt_name='sim_lbco')"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "95",
+   "metadata": {},
+   "source": [
+    "#### Exercise 2.2: Set Instrument Parameters\n",
+    "\n",
+    "Set the instrument parameters for the LBCO experiment."
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "96",
+   "metadata": {},
+   "source": [
+    "**Hint:**"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "97",
+   "metadata": {
+    "tags": [
+     "dmsc-school-hint"
+    ]
+   },
+   "source": [
+    "Use the values from the data reduction process for the LBCO and\n",
+    "follow the same approach as in the previous part of the notebook."
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "98",
+   "metadata": {},
+   "source": [
+    "**Solution:**"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "99",
+   "metadata": {
+    "tags": [
+     "solution",
+     "hide-input"
+    ]
+   },
+   "outputs": [],
+   "source": [
+    "project_2.experiments['sim_lbco'].instrument.setup_twotheta_bank = ed.get_value_from_xye_header(\n",
+    "    lbco_xye_path, 'two_theta'\n",
+    ")\n",
+    "project_2.experiments['sim_lbco'].instrument.calib_d_to_tof_linear = ed.get_value_from_xye_header(\n",
+    "    lbco_xye_path, 'DIFC'\n",
+    ")"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "100",
+   "metadata": {},
+   "source": [
+    "#### Exercise 2.3: Set Peak Profile Parameters\n",
+    "\n",
+    "Set the peak profile parameters for the LBCO experiment."
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "101",
+   "metadata": {},
+   "source": [
+    "**Hint:**"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "102",
+   "metadata": {
+    "tags": [
+     "dmsc-school-hint"
+    ]
+   },
+   "source": [
+    "Use the values from the\n",
+    "previous part of the notebook. You can either manually copy the values\n",
+    "from the Si fit or use the `value` attribute of the parameters from\n",
+    "the Si experiment to set the initial values for the LBCO experiment.\n",
+    "This will help us to have a good starting point for the fit."
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "103",
+   "metadata": {},
+   "source": [
+    "**Solution:**"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "104",
+   "metadata": {
+    "tags": [
+     "solution",
+     "hide-input"
+    ]
+   },
+   "outputs": [],
+   "source": [
+    "# # Create a reference to the peak profile parameters from the Si\n",
+    "sim_si_peak = project_1.experiments['sim_si'].peak\n",
+    "project_2.experiments['sim_lbco'].peak_profile_type = 'pseudo-voigt * ikeda-carpenter'\n",
+    "project_2.experiments['sim_lbco'].peak.broad_gauss_sigma_0 = sim_si_peak.broad_gauss_sigma_0.value\n",
+    "project_2.experiments['sim_lbco'].peak.broad_gauss_sigma_1 = sim_si_peak.broad_gauss_sigma_1.value\n",
+    "project_2.experiments['sim_lbco'].peak.broad_gauss_sigma_2 = sim_si_peak.broad_gauss_sigma_2.value\n",
+    "project_2.experiments['sim_lbco'].peak.broad_mix_beta_0 = sim_si_peak.broad_mix_beta_0.value\n",
+    "project_2.experiments['sim_lbco'].peak.broad_mix_beta_1 = sim_si_peak.broad_mix_beta_1.value\n",
+    "project_2.experiments['sim_lbco'].peak.asym_alpha_0 = sim_si_peak.asym_alpha_0.value\n",
+    "project_2.experiments['sim_lbco'].peak.asym_alpha_1 = sim_si_peak.asym_alpha_1.value"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "105",
+   "metadata": {},
+   "source": [
+    "#### Exercise 2.4: Set Background\n",
+    "\n",
+    "Set the background points for the LBCO experiment. What would you\n",
+    "suggest as the initial intensity value for the background points?"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "106",
+   "metadata": {},
+   "source": [
+    "**Hint:**"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "107",
+   "metadata": {
+    "tags": [
+     "dmsc-school-hint"
+    ]
+   },
+   "source": [
+    "Use the same approach as in the previous part of the notebook, but\n",
+    "this time you need to set the background points for the LBCO\n",
+    "experiment. You can zoom in on the measured diffraction pattern to\n",
+    "determine the approximate background level."
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "108",
+   "metadata": {},
+   "source": [
+    "**Solution:**"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "109",
+   "metadata": {
+    "tags": [
+     "solution",
+     "hide-input"
+    ]
+   },
+   "outputs": [],
+   "source": [
+    "project_2.experiments['sim_lbco'].background_type = 'line-segment'\n",
+    "project_2.experiments['sim_lbco'].background.create(id='1', x=50000, y=0.2)\n",
+    "project_2.experiments['sim_lbco'].background.create(id='2', x=60000, y=0.2)\n",
+    "project_2.experiments['sim_lbco'].background.create(id='3', x=70000, y=0.2)\n",
+    "project_2.experiments['sim_lbco'].background.create(id='4', x=80000, y=0.2)\n",
+    "project_2.experiments['sim_lbco'].background.create(id='5', x=90000, y=0.2)\n",
+    "project_2.experiments['sim_lbco'].background.create(id='6', x=100000, y=0.2)\n",
+    "project_2.experiments['sim_lbco'].background.create(id='7', x=110000, y=0.2)"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "110",
+   "metadata": {},
+   "source": [
+    "### 🧩 Exercise 3: Define a Structure – LBCO\n",
+    "\n",
+    "The LBSO structure is not as simple as the Si one, as it contains\n",
+    "multiple atoms in the unit cell. It is not in COD, so we give you the\n",
+    "structural parameters in CIF format to create the structure.\n",
+    "\n",
+    "Note that those parameters are not necessarily the most accurate ones,\n",
+    "but they are a good starting point for the fit. The aim of the study\n",
+    "is to refine the LBCO lattice parameters."
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "111",
+   "metadata": {},
+   "source": [
+    "```\n",
+    "data_lbco\n",
+    "\n",
+    "_space_group.name_H-M_alt  \"P m -3 m\"\n",
+    "_space_group.IT_coordinate_system_code  1\n",
+    "\n",
+    "_cell.length_a      3.89\n",
+    "_cell.length_b      3.89\n",
+    "_cell.length_c      3.89\n",
+    "_cell.angle_alpha  90.0\n",
+    "_cell.angle_beta   90.0\n",
+    "_cell.angle_gamma  90.0\n",
+    "\n",
+    "loop_\n",
+    "_atom_site.label\n",
+    "_atom_site.type_symbol\n",
+    "_atom_site.fract_x\n",
+    "_atom_site.fract_y\n",
+    "_atom_site.fract_z\n",
+    "_atom_site.wyckoff_letter\n",
+    "_atom_site.occupancy\n",
+    "_atom_site.ADP_type\n",
+    "_atom_site.B_iso_or_equiv\n",
+    "La La   0.0 0.0 0.0   a   0.5   Biso 0.95\n",
+    "Ba Ba   0.0 0.0 0.0   a   0.5   Biso 0.95\n",
+    "Co Co   0.5 0.5 0.5   b   1.0   Biso 0.80\n",
+    "O  O    0.0 0.5 0.5   c   1.0   Biso 1.66\n",
+    "```"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "112",
+   "metadata": {},
+   "source": [
+    "Note that the `occupancy` of the La and Ba atoms is 0.5\n",
+    "and those atoms are located in the same position (0, 0, 0) in the unit\n",
+    "cell. This means that an extra attribute `occupancy` needs to be set\n",
+    "for those atoms later in the structure.\n",
+    "\n",
+    "We model the La/Ba site using the virtual crystal approximation. In\n",
+    "this approach, the scattering is taken as a weighted average of La and\n",
+    "Ba. This reproduces the average diffraction pattern well but does not\n",
+    "capture certain real-world effects.\n",
+    "\n",
+    "The edge cases are:\n",
+    "- **Random distribution**. La and Ba atoms are placed randomly. The\n",
+    "   Bragg peaks still match the average structure, but the pattern also\n",
+    "   shows extra background (diffuse scattering) between the peaks, but\n",
+    "   this is usually neglected in the analysis.\n",
+    "- **Perfect ordering**. La and Ba arrange themselves in a regular\n",
+    "   pattern, creating a larger repeating unit. This gives rise to extra\n",
+    "   peaks (\"superlattice reflections\") and changes the intensity of\n",
+    "   some existing peaks.\n",
+    "- **Virtual crystal approximation (our model)**. We replace the site\n",
+    "   with a single \"virtual atom\" that averages La and Ba. This gives\n",
+    "   the correct average Bragg peaks but leaves out the extra background\n",
+    "   of the random case and the extra peaks of the ordered case."
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "113",
+   "metadata": {},
+   "source": [
+    "#### Exercise 3.1: Create Structure\n",
+    "\n",
+    "Add a structure for LBCO to the project. The structure\n",
+    "parameters will be set in the next exercises."
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "114",
+   "metadata": {},
+   "source": [
+    "**Hint:**"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "115",
+   "metadata": {
+    "tags": [
+     "dmsc-school-hint"
+    ]
+   },
+   "source": [
+    "You can use the same approach as in the previous part of the notebook,\n",
+    "but this time you need to use the name corresponding to the LBCO\n",
+    "structure, e.g. 'lbco'."
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "116",
+   "metadata": {},
+   "source": [
+    "**Solution:**"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "117",
+   "metadata": {
+    "tags": [
+     "solution",
+     "hide-input"
+    ]
+   },
+   "outputs": [],
+   "source": [
+    "project_2.structures.create(name='lbco')"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "118",
+   "metadata": {},
+   "source": [
+    "#### Exercise 3.2: Set Space Group\n",
+    "\n",
+    "Set the space group for the LBCO structure."
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "119",
+   "metadata": {},
+   "source": [
+    "**Hint:**"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "120",
+   "metadata": {
+    "tags": [
+     "dmsc-school-hint"
+    ]
+   },
+   "source": [
+    "Use the space group name and IT coordinate system code from the CIF\n",
+    "data."
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "121",
+   "metadata": {},
+   "source": [
+    "**Solution:**"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "122",
+   "metadata": {
+    "tags": [
+     "solution",
+     "hide-input"
+    ]
+   },
+   "outputs": [],
+   "source": [
+    "project_2.structures['lbco'].space_group.name_h_m = 'P m -3 m'\n",
+    "project_2.structures['lbco'].space_group.it_coordinate_system_code = '1'"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "123",
+   "metadata": {},
+   "source": [
+    "#### Exercise 3.3: Set Lattice Parameters\n",
+    "\n",
+    "Set the lattice parameters for the LBCO structure."
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "124",
+   "metadata": {},
+   "source": [
+    "**Hint:**"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "125",
+   "metadata": {
+    "tags": [
+     "dmsc-school-hint"
+    ]
+   },
+   "source": [
+    "Use the lattice parameters from the CIF data."
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "126",
+   "metadata": {},
+   "source": [
+    "**Solution:**"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "127",
+   "metadata": {
+    "tags": [
+     "solution",
+     "hide-input"
+    ]
+   },
+   "outputs": [],
+   "source": [
+    "project_2.structures['lbco'].cell.length_a = 3.88"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "128",
+   "metadata": {},
+   "source": [
+    "#### Exercise 3.4: Set Atom Sites\n",
+    "\n",
+    "Set the atom sites for the LBCO structure."
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "129",
+   "metadata": {},
+   "source": [
+    "**Hint:**"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "130",
+   "metadata": {
+    "tags": [
+     "dmsc-school-hint"
+    ]
+   },
+   "source": [
+    "Use the atom sites from the CIF data. You can use the `add` method of\n",
+    "the `atom_sites` attribute of the structure to add the atom sites."
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "131",
+   "metadata": {},
+   "source": [
+    "**Solution:**"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "132",
+   "metadata": {
+    "tags": [
+     "solution",
+     "hide-input"
+    ]
+   },
+   "outputs": [],
+   "source": [
+    "project_2.structures['lbco'].atom_sites.create(\n",
+    "    label='La',\n",
+    "    type_symbol='La',\n",
+    "    fract_x=0,\n",
+    "    fract_y=0,\n",
+    "    fract_z=0,\n",
+    "    wyckoff_letter='a',\n",
+    "    b_iso=0.95,\n",
+    "    occupancy=0.5,\n",
+    ")\n",
+    "project_2.structures['lbco'].atom_sites.create(\n",
+    "    label='Ba',\n",
+    "    type_symbol='Ba',\n",
+    "    fract_x=0,\n",
+    "    fract_y=0,\n",
+    "    fract_z=0,\n",
+    "    wyckoff_letter='a',\n",
+    "    b_iso=0.95,\n",
+    "    occupancy=0.5,\n",
+    ")\n",
+    "project_2.structures['lbco'].atom_sites.create(\n",
+    "    label='Co',\n",
+    "    type_symbol='Co',\n",
+    "    fract_x=0.5,\n",
+    "    fract_y=0.5,\n",
+    "    fract_z=0.5,\n",
+    "    wyckoff_letter='b',\n",
+    "    b_iso=0.80,\n",
+    ")\n",
+    "project_2.structures['lbco'].atom_sites.create(\n",
+    "    label='O',\n",
+    "    type_symbol='O',\n",
+    "    fract_x=0,\n",
+    "    fract_y=0.5,\n",
+    "    fract_z=0.5,\n",
+    "    wyckoff_letter='c',\n",
+    "    b_iso=1.66,\n",
+    ")"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "133",
+   "metadata": {},
+   "source": [
+    "### 🔗 Exercise 4: Assign Structure to Experiment\n",
+    "\n",
+    "Now assign the LBCO structure to the experiment created above."
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "134",
+   "metadata": {},
+   "source": [
+    "**Hint:**"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "135",
+   "metadata": {
+    "tags": [
+     "dmsc-school-hint"
+    ]
+   },
+   "source": [
+    "Use the `linked_phases` attribute of the experiment to link the\n",
+    "crystal structure."
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "136",
+   "metadata": {},
+   "source": [
+    "**Solution:**"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "137",
+   "metadata": {
+    "tags": [
+     "solution",
+     "hide-input"
+    ]
+   },
+   "outputs": [],
+   "source": [
+    "project_2.experiments['sim_lbco'].linked_phases.create(id='lbco', scale=1.0)"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "138",
+   "metadata": {},
+   "source": [
+    "### 🚀 Exercise 5: Analyze and Fit the Data\n",
+    "\n",
+    "#### Exercise 5.1: Set Fit Parameters\n",
+    "\n",
+    "Select the initial set of parameters to be refined during the fitting\n",
+    "process."
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "139",
+   "metadata": {},
+   "source": [
+    "**Hint:**"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "140",
+   "metadata": {
+    "tags": [
+     "dmsc-school-hint"
+    ]
+   },
+   "source": [
+    "You can start with the scale factor and the background points, as in\n",
+    "the Si fit."
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "141",
+   "metadata": {},
+   "source": [
+    "**Solution:**"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "142",
+   "metadata": {
+    "tags": [
+     "solution",
+     "hide-input"
+    ]
+   },
+   "outputs": [],
+   "source": [
+    "project_2.experiments['sim_lbco'].linked_phases['lbco'].scale.free = True\n",
+    "\n",
+    "for line_segment in project_2.experiments['sim_lbco'].background:\n",
+    "    line_segment.y.free = True"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "143",
+   "metadata": {},
+   "source": [
+    "#### Exercise 5.2: Run Fitting\n",
+    "\n",
+    "Visualize the measured and calculated diffraction patterns before\n",
+    "fitting and then run the fitting process."
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "144",
+   "metadata": {},
+   "source": [
+    "**Hint:**"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "145",
+   "metadata": {
+    "tags": [
+     "dmsc-school-hint"
+    ]
+   },
+   "source": [
+    "Use the `plot_meas_vs_calc` method of the project to visualize the\n",
+    "measured and calculated diffraction patterns before fitting. Then, use\n",
+    "the `fit` method of the `analysis` object of the project to perform\n",
+    "the fitting process."
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "146",
+   "metadata": {},
+   "source": [
+    "**Solution:**"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "147",
+   "metadata": {
+    "tags": [
+     "solution",
+     "hide-input"
+    ]
+   },
+   "outputs": [],
+   "source": [
+    "project_2.plot_meas_vs_calc(expt_name='sim_lbco')\n",
+    "\n",
+    "project_2.analysis.fit()\n",
+    "project_2.analysis.show_fit_results()"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "148",
+   "metadata": {},
+   "source": [
+    "#### Exercise 5.3: Find the Misfit in the Fit\n",
+    "\n",
+    "Visualize the measured and calculated diffraction patterns after the\n",
+    "fit. As you can see, the fit shows noticeable discrepancies. If you\n",
+    "zoom in on different regions of the pattern, you will observe that all\n",
+    "the calculated peaks are shifted to the left.\n",
+    "\n",
+    "What could be the reason for the misfit?"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "149",
+   "metadata": {},
+   "source": [
+    "**Hint:**"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "150",
+   "metadata": {
+    "tags": [
+     "dmsc-school-hint"
+    ]
+   },
+   "source": [
+    "Consider the following options:\n",
+    "1. The conversion parameters from TOF to d-spacing are not correct.\n",
+    "2. The lattice parameters of the LBCO phase are not correct.\n",
+    "3. The peak profile parameters are not correct.\n",
+    "4. The background points are not correct."
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "151",
+   "metadata": {},
+   "source": [
+    "**Solution:**"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "152",
+   "metadata": {
+    "tags": [
+     "dmsc-school-hint"
+    ]
+   },
+   "source": [
+    "\n",
+    "1. ❌ The conversion parameters from TOF to d-spacing were set based\n",
+    "on the data reduction step. While they are specific to each dataset\n",
+    "and thus differ from those used for the Si data, the full reduction\n",
+    "workflow has already been validated with the Si fit. Therefore, they\n",
+    "are not the cause of the misfit in this case.\n",
+    "2. ✅ The lattice parameters of the LBCO phase were set based on the\n",
+    "CIF data, which is a good starting point, but they are not necessarily\n",
+    "as accurate as needed for the fit. The lattice parameters may need to\n",
+    "be refined.\n",
+    "3. ❌ The peak profile parameters do not change the position of the\n",
+    "peaks, but rather their shape.\n",
+    "4. ❌ The background points affect the background level, but not the\n",
+    "peak positions."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "153",
+   "metadata": {
+    "tags": [
+     "solution",
+     "hide-input"
+    ]
+   },
+   "outputs": [],
+   "source": [
+    "project_2.plot_meas_vs_calc(expt_name='sim_lbco')"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "154",
+   "metadata": {},
+   "source": [
+    "#### Exercise 5.4: Refine the LBCO Lattice Parameter\n",
+    "\n",
+    "To improve the fit, refine the lattice parameters of the LBCO phase."
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "155",
+   "metadata": {},
+   "source": [
+    "**Hint:**"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "156",
+   "metadata": {
+    "tags": [
+     "dmsc-school-hint"
+    ]
+   },
+   "source": [
+    "To achieve this, we will set the `free` attribute of the `length_a`\n",
+    "parameter of the LBCO cell to `True`.\n",
+    "\n",
+    "LBCO has a cubic crystal structure (space group `P m -3 m`), which\n",
+    "means that `length_b` and `length_c` are constrained to be equal to\n",
+    "`length_a`. Therefore, only `length_a` needs to be refined; the other\n",
+    "two will be updated automatically. All cell angles are fixed at 90°,\n",
+    "so they do not require refinement."
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "157",
+   "metadata": {},
+   "source": [
+    "**Solution:**"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "158",
+   "metadata": {
+    "tags": [
+     "solution",
+     "hide-input"
+    ]
+   },
+   "outputs": [],
+   "source": [
+    "project_2.structures['lbco'].cell.length_a.free = True\n",
+    "\n",
+    "project_2.analysis.fit()\n",
+    "project_2.analysis.show_fit_results()\n",
+    "\n",
+    "project_2.plot_meas_vs_calc(expt_name='sim_lbco')"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "159",
+   "metadata": {},
+   "source": [
+    "One of the main goals of this study was to refine the lattice\n",
+    "parameter of the LBCO phase. As shown in the updated fit results, the\n",
+    "overall fit has improved significantly, even though the change in cell\n",
+    "length is less than 1% of the initial value. This demonstrates how\n",
+    "even a small adjustment to the lattice parameter can have a\n",
+    "substantial impact on the quality of the fit."
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "160",
+   "metadata": {},
+   "source": [
+    "#### Exercise 5.5: Visualize the Fit Results in d-spacing\n",
+    "\n",
+    "Plot measured vs calculated diffraction patterns in d-spacing instead\n",
+    "of TOF."
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "161",
+   "metadata": {},
+   "source": [
+    "**Hint:**"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "162",
+   "metadata": {
+    "tags": [
+     "dmsc-school-hint"
+    ]
+   },
+   "source": [
+    "Use the `plot_meas_vs_calc` method of the project and set the\n",
+    "`d_spacing` parameter to `True`."
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "163",
+   "metadata": {},
+   "source": [
+    "**Solution:**"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "164",
+   "metadata": {
+    "tags": [
+     "solution",
+     "hide-input"
+    ]
+   },
+   "outputs": [],
+   "source": [
+    "project_2.plot_meas_vs_calc(expt_name='sim_lbco', x='d_spacing')"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "165",
+   "metadata": {},
+   "source": [
+    "#### Exercise 5.6: Refine the Peak Profile Parameters\n",
+    "\n",
+    "As you can see, the fit is now relatively good and the peak positions\n",
+    "are much closer to the measured data.\n",
+    "\n",
+    "The peak profile parameters were not refined, and their starting\n",
+    "values were set based on the previous fit of the Si standard sample.\n",
+    "Although these starting values are reasonable and provide a good\n",
+    "starting point for the fit, they are not necessarily optimal for the\n",
+    "LBCO phase. This can be seen while inspecting the individual peaks in\n",
+    "the diffraction pattern. For example, the calculated curve does not\n",
+    "perfectly describe the peak at about 1.38 Å, as can be seen below:"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "166",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project_2.plot_meas_vs_calc(expt_name='sim_lbco', x='d_spacing', x_min=1.35, x_max=1.40)"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "167",
+   "metadata": {},
+   "source": [
+    "The peak profile parameters are determined based on both the\n",
+    "instrument and the sample characteristics, so they can vary when\n",
+    "analyzing different samples on the same instrument. Therefore, it is\n",
+    "better to refine them as well.\n",
+    "\n",
+    "Select the peak profile parameters to be refined during the fitting\n",
+    "process."
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "168",
+   "metadata": {},
+   "source": [
+    "**Hint:**"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "169",
+   "metadata": {
+    "tags": [
+     "dmsc-school-hint"
+    ]
+   },
+   "source": [
+    "You can set the `free` attribute of the peak profile parameters to\n",
+    "`True` to allow the fitting process to adjust them. You can use the\n",
+    "same approach as in the previous part of the notebook, but this time\n",
+    "you will refine the peak profile parameters of the LBCO phase."
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "170",
+   "metadata": {},
+   "source": [
+    "**Solution:**"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "171",
+   "metadata": {
+    "tags": [
+     "solution",
+     "hide-input"
+    ]
+   },
+   "outputs": [],
+   "source": [
+    "project_2.experiments['sim_lbco'].peak.broad_gauss_sigma_0.free = True\n",
+    "project_2.experiments['sim_lbco'].peak.broad_gauss_sigma_1.free = True\n",
+    "project_2.experiments['sim_lbco'].peak.broad_gauss_sigma_2.free = True\n",
+    "project_2.experiments['sim_lbco'].peak.broad_mix_beta_0.free = True\n",
+    "project_2.experiments['sim_lbco'].peak.broad_mix_beta_1.free = True\n",
+    "project_2.experiments['sim_lbco'].peak.asym_alpha_0.free = True\n",
+    "project_2.experiments['sim_lbco'].peak.asym_alpha_1.free = True\n",
+    "\n",
+    "project_2.analysis.fit()\n",
+    "project_2.analysis.show_fit_results()\n",
+    "\n",
+    "project_2.plot_meas_vs_calc(expt_name='sim_lbco', x='d_spacing', x_min=1.35, x_max=1.40)"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "172",
+   "metadata": {},
+   "source": [
+    "#### Exercise 5.7: Find Undefined Features\n",
+    "\n",
+    "After refining the lattice parameter and the peak profile parameters,\n",
+    "the fit is significantly improved, but inspect the diffraction pattern\n",
+    "again. Are you noticing anything undefined?"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "173",
+   "metadata": {},
+   "source": [
+    "**Hint:**"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "174",
+   "metadata": {
+    "tags": [
+     "dmsc-school-hint"
+    ]
+   },
+   "source": [
+    "While the fit is now significantly better, there are still some\n",
+    "unexplained peaks in the diffraction pattern. These peaks are not\n",
+    "accounted for by the LBCO phase. For example, if you zoom in on the\n",
+    "region around 1.6 Å (or 95,000 μs), you will notice that the rightmost\n",
+    "peak is not explained by the LBCO phase at all."
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "175",
+   "metadata": {},
+   "source": [
+    "**Solution:**"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "176",
+   "metadata": {
+    "tags": [
+     "solution",
+     "hide-input"
+    ]
+   },
+   "outputs": [],
+   "source": [
+    "project_2.plot_meas_vs_calc(expt_name='sim_lbco', x='d_spacing', x_min=1.53, x_max=1.7)"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "177",
+   "metadata": {},
+   "source": [
+    "#### Exercise 5.8: Identify the Cause of the Unexplained Peaks\n",
+    "\n",
+    "Analyze the residual peaks that remain after refining the LBCO phase\n",
+    "and the peak-profile parameters. Based on their positions and\n",
+    "characteristics, decide which potential cause best explains the\n",
+    "misfit."
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "178",
+   "metadata": {},
+   "source": [
+    "**Hint:**"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "179",
+   "metadata": {
+    "tags": [
+     "dmsc-school-hint"
+    ]
+   },
+   "source": [
+    "Consider the following options:\n",
+    "1. The LBCO phase is not correctly modeled.\n",
+    "2. The LBCO phase is not the only phase present in the sample.\n",
+    "3. The data reduction process introduced artifacts.\n",
+    "4. The studied sample is not LBCO, but rather a different phase."
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "180",
+   "metadata": {},
+   "source": [
+    "**Solution:**"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "181",
+   "metadata": {
+    "tags": [
+     "dmsc-school-hint"
+    ]
+   },
+   "source": [
+    "1. ❌ In principle, this could be the case, as sometimes the presence\n",
+    "of extra peaks in the diffraction pattern can indicate lower symmetry\n",
+    "than the one used in the model, or that the model is not complete.\n",
+    "However, in this case, the LBCO phase is correctly modeled based on\n",
+    "the CIF data.\n",
+    "2. ✅ The unexplained peaks are due to the presence of an impurity\n",
+    "phase in the sample, which is not included in the current model.\n",
+    "3. ❌ The data reduction process is not likely to introduce such\n",
+    "specific peaks, as it is tested and verified in the previous part of\n",
+    "the notebook.\n",
+    "4. ❌ This could also be the case in real experiments, but in this\n",
+    "case, we know that the sample is LBCO, as it was simulated based on\n",
+    "the CIF data."
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "182",
+   "metadata": {},
+   "source": [
+    "#### Exercise 5.9: Identify the impurity phase\n",
+    "\n",
+    "Use the positions of the unexplained peaks to identify the most likely\n",
+    "secondary phase present in the sample."
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "183",
+   "metadata": {},
+   "source": [
+    "**Hint:**"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "184",
+   "metadata": {
+    "tags": [
+     "dmsc-school-hint"
+    ]
+   },
+   "source": [
+    "Check the positions of the unexplained peaks in the diffraction\n",
+    "pattern. Compare them with the known diffraction patterns in the\n",
+    "previous part of the notebook."
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "185",
+   "metadata": {},
+   "source": [
+    "**Solution:**"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "186",
+   "metadata": {
+    "tags": [
+     "dmsc-school-hint"
+    ]
+   },
+   "source": [
+    "The unexplained peaks are likely due to the presence of a small amount\n",
+    "of Si in the LBCO sample. In real experiments, it might happen, e.g.,\n",
+    "because the sample holder was not cleaned properly after the Si\n",
+    "experiment.\n",
+    "\n",
+    "You can visalize both the patterns of the Si and LBCO phases to\n",
+    "confirm this hypothesis."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "187",
+   "metadata": {
+    "tags": [
+     "solution",
+     "hide-input"
+    ]
+   },
+   "outputs": [],
+   "source": [
+    "project_1.plot_meas_vs_calc(expt_name='sim_si', x='d_spacing', x_min=1, x_max=1.7)\n",
+    "project_2.plot_meas_vs_calc(expt_name='sim_lbco', x='d_spacing', x_min=1, x_max=1.7)"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "188",
+   "metadata": {},
+   "source": [
+    "#### Exercise 5.10: Create a Second Structure – Si as Impurity\n",
+    "\n",
+    "Create a second structure for the Si phase, which is the impurity\n",
+    "phase identified in the previous step. Link this structure to the\n",
+    "LBCO experiment."
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "189",
+   "metadata": {},
+   "source": [
+    "**Hint:**"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "190",
+   "metadata": {
+    "tags": [
+     "dmsc-school-hint"
+    ]
+   },
+   "source": [
+    "You can use the same approach as in the previous part of the notebook,\n",
+    "but this time you need to create a structure for Si and link it to\n",
+    "the LBCO experiment."
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "191",
+   "metadata": {},
+   "source": [
+    "**Solution:**"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "192",
+   "metadata": {
+    "tags": [
+     "solution",
+     "hide-input"
+    ]
+   },
+   "outputs": [],
+   "source": [
+    "# Set Space Group\n",
+    "project_2.structures.create(name='si')\n",
+    "project_2.structures['si'].space_group.name_h_m = 'F d -3 m'\n",
+    "project_2.structures['si'].space_group.it_coordinate_system_code = '2'\n",
+    "\n",
+    "# Set Lattice Parameters\n",
+    "project_2.structures['si'].cell.length_a = 5.43\n",
+    "\n",
+    "# Set Atom Sites\n",
+    "project_2.structures['si'].atom_sites.create(\n",
+    "    label='Si',\n",
+    "    type_symbol='Si',\n",
+    "    fract_x=0,\n",
+    "    fract_y=0,\n",
+    "    fract_z=0,\n",
+    "    wyckoff_letter='a',\n",
+    "    b_iso=0.89,\n",
+    ")\n",
+    "\n",
+    "# Assign Structure to Experiment\n",
+    "project_2.experiments['sim_lbco'].linked_phases.create(id='si', scale=1.0)"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "193",
+   "metadata": {},
+   "source": [
+    "#### Exercise 5.11: Refine the Scale of the Si Phase\n",
+    "\n",
+    "Visualize the measured diffraction pattern and the calculated\n",
+    "diffraction pattern. Check if the Si phase is contributing to the\n",
+    "calculated diffraction pattern. Refine the scale factor of the Si\n",
+    "phase to improve the fit."
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "194",
+   "metadata": {},
+   "source": [
+    "**Hint:**"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "195",
+   "metadata": {
+    "tags": [
+     "dmsc-school-hint"
+    ]
+   },
+   "source": [
+    "You can use the `plot_meas_vs_calc` method of the project to visualize\n",
+    "the patterns. Then, set the `free` attribute of the `scale` parameter\n",
+    "of the Si phase to `True` to allow the fitting process to adjust the\n",
+    "scale factor."
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "196",
+   "metadata": {},
+   "source": [
+    "**Solution:**"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "197",
+   "metadata": {
+    "tags": [
+     "solution",
+     "hide-input"
+    ]
+   },
+   "outputs": [],
+   "source": [
+    "# Before optimizing the parameters, we can visualize the measured\n",
+    "# diffraction pattern and the calculated diffraction pattern based on\n",
+    "# the two phases: LBCO and Si.\n",
+    "project_2.plot_meas_vs_calc(expt_name='sim_lbco')\n",
+    "\n",
+    "# As you can see, the calculated pattern is now the sum of both phases,\n",
+    "# and Si peaks are visible in the calculated pattern. However, their\n",
+    "# intensities are much too high. Therefore, we need to refine the scale\n",
+    "# factor of the Si phase.\n",
+    "project_2.experiments['sim_lbco'].linked_phases['si'].scale.free = True\n",
+    "\n",
+    "# Now we can perform the fit with both phases included.\n",
+    "project_2.analysis.fit()\n",
+    "project_2.analysis.show_fit_results()\n",
+    "\n",
+    "# Let's plot the measured diffraction pattern and the calculated\n",
+    "# diffraction pattern both for the full range and for a zoomed-in region\n",
+    "# around the previously unexplained peak near 95,000 μs. The calculated\n",
+    "# pattern will be the sum of the two phases.\n",
+    "project_2.plot_meas_vs_calc(expt_name='sim_lbco')\n",
+    "project_2.plot_meas_vs_calc(expt_name='sim_lbco', x_min=88000, x_max=101000)"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "198",
+   "metadata": {},
+   "source": [
+    "All previously unexplained peaks are now accounted for in the pattern,\n",
+    "and the fit is improved. Some discrepancies in the peak intensities\n",
+    "remain, but further improvements would require more advanced data\n",
+    "reduction and analysis, which are beyond the scope of this school.\n",
+    "\n",
+    "To review the analysis results, you can generate and print a summary\n",
+    "report using the `show_report()` method, as demonstrated in the cell\n",
+    "below. The report includes parameters related to the structure and\n",
+    "the experiment, such as the refined unit cell parameter `a` of LBCO.\n",
+    "\n",
+    "Information about the crystal or magnetic structure, along with\n",
+    "experimental details, fitting quality, and other relevant data, is\n",
+    "often submitted to crystallographic journals as part of a scientific\n",
+    "publication. It can also be deposited in crystallographic databases\n",
+    "when relevant."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "199",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project_2.summary.show_report()"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "200",
+   "metadata": {},
+   "source": [
+    "Finally, we save the project to disk to preserve the current state of\n",
+    "the analysis."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "201",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project_2.save_as(dir_path='powder_diffraction_LBCO_Si')"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "202",
+   "metadata": {},
+   "source": [
+    "#### Final Remarks\n",
+    "\n",
+    "In this part of the notebook, you learned how to use EasyDiffraction\n",
+    "to refine lattice parameters of a more complex crystal structure,\n",
+    "La₀.₅Ba₀.₅CoO₃ (LBCO).\n",
+    "\n",
+    "In real experiments, you might also refine\n",
+    "additional parameters, such as atomic positions, occupancies, and\n",
+    "atomic displacement factors, to achieve an even better fit. For our\n",
+    "purposes, we'll stop here, as the goal was to give you a starting\n",
+    "point for analyzing more complex crystal structures with\n",
+    "EasyDiffraction."
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "203",
+   "metadata": {},
+   "source": [
+    "## 🎁 Bonus\n",
+    "\n",
+    "Congratulations — you've now completed the diffraction data analysis\n",
+    "part of the DMSC Summer School!\n",
+    "\n",
+    "If you'd like to keep exploring, the EasyDiffraction library offers\n",
+    "many additional tutorials and examples on the official documentation\n",
+    "site: 👉 https://docs.easydiffraction.org/lib/tutorials/\n",
+    "\n",
+    "Besides the Python package, EasyDiffraction also comes with a\n",
+    "graphical user interface (GUI) that lets you perform similar analyses\n",
+    "without writing code. To be fair, it's not *quite* feature-complete\n",
+    "compared to the Python library yet — but we're working on it! 🚧\n",
+    "\n",
+    "If you prefer a point-and-click interface over coding, the GUI\n",
+    "provides a user-friendly way to analyze diffraction data. You can\n",
+    "download it as a standalone application here: 👉\n",
+    "https://easydiffraction.org\n",
+    "\n",
+    "We'd love to hear your feedback on EasyDiffraction — both the library\n",
+    "and the GUI! 💬"
+   ]
+  }
+ ],
+ "metadata": {
+  "jupytext": {
+   "cell_metadata_filter": "tags,title,-all",
+   "main_language": "python",
+   "notebook_metadata_filter": "-all"
+  }
+ },
+ "nbformat": 4,
+ "nbformat_minor": 5
+}
diff --git a/tutorials/ed-13.py b/docs/docs/tutorials/ed-13.py
similarity index 100%
rename from tutorials/ed-13.py
rename to docs/docs/tutorials/ed-13.py
diff --git a/docs/docs/tutorials/ed-14.ipynb b/docs/docs/tutorials/ed-14.ipynb
new file mode 100644
index 00000000..25927d6a
--- /dev/null
+++ b/docs/docs/tutorials/ed-14.ipynb
@@ -0,0 +1,319 @@
+{
+ "cells": [
+  {
+   "cell_type": "markdown",
+   "id": "0",
+   "metadata": {},
+   "source": [
+    "# Structure Refinement: Tb2TiO7, HEiDi\n",
+    "\n",
+    "Crystal structure refinement of Tb2TiO7 using single crystal neutron\n",
+    "diffraction data from HEiDi at FRM II."
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "1",
+   "metadata": {},
+   "source": [
+    "## Import Library"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "2",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "import easydiffraction as ed"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "3",
+   "metadata": {},
+   "source": [
+    "## Step 1: Define Project"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "4",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "# Create minimal project without name and description\n",
+    "project = ed.Project()"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "5",
+   "metadata": {},
+   "source": [
+    "## Step 2: Define Structure"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "6",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "# Download CIF file from repository\n",
+    "structure_path = ed.download_data(id=20, destination='data')"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "7",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.structures.add_from_cif_path(structure_path)"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "8",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.structures.show_names()"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "9",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "structure = project.structures['tbti']"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "10",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "structure.atom_sites['Tb'].b_iso = 0.0\n",
+    "structure.atom_sites['Ti'].b_iso = 0.0\n",
+    "structure.atom_sites['O1'].b_iso = 0.0\n",
+    "structure.atom_sites['O2'].b_iso = 0.0"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "11",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "structure.show_as_cif()"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "12",
+   "metadata": {},
+   "source": [
+    "## Step 3: Define Experiment"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "13",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "data_path = ed.download_data(id=19, destination='data')"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "14",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.experiments.add_from_data_path(\n",
+    "    name='heidi',\n",
+    "    data_path=data_path,\n",
+    "    sample_form='single crystal',\n",
+    "    beam_mode='constant wavelength',\n",
+    "    radiation_probe='neutron',\n",
+    ")"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "15",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "experiment = project.experiments['heidi']  # TODO: <heidi (None)>"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "16",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "experiment.linked_crystal.id = 'tbti'\n",
+    "experiment.linked_crystal.scale = 1.0"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "17",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "experiment.instrument.setup_wavelength = 0.793"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "18",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "experiment.extinction.mosaicity = 29820\n",
+    "experiment.extinction.radius = 30"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "19",
+   "metadata": {},
+   "source": [
+    "## Step 4: Perform Analysis"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "20",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.plot_meas_vs_calc(expt_name='heidi')"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "21",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "experiment.linked_crystal.scale.free = True\n",
+    "experiment.extinction.radius.free = True"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "22",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "experiment.show_as_cif()"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "23",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "# Start refinement. All parameters, which have standard uncertainties\n",
+    "# in the input CIF files, are refined by default.\n",
+    "project.analysis.fit()"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "24",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "# Show fit results summary\n",
+    "project.analysis.show_fit_results()"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "25",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "experiment.show_as_cif()"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "26",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.experiments.show_names()"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "27",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.plot_meas_vs_calc(expt_name='heidi')"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "28",
+   "metadata": {},
+   "source": [
+    "## Step 5: Show Project Summary"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "29",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.summary.show_report()"
+   ]
+  }
+ ],
+ "metadata": {
+  "jupytext": {
+   "cell_metadata_filter": "-all",
+   "main_language": "python",
+   "notebook_metadata_filter": "-all"
+  }
+ },
+ "nbformat": 4,
+ "nbformat_minor": 5
+}
diff --git a/tutorials/ed-14.py b/docs/docs/tutorials/ed-14.py
similarity index 100%
rename from tutorials/ed-14.py
rename to docs/docs/tutorials/ed-14.py
diff --git a/docs/docs/tutorials/ed-15.ipynb b/docs/docs/tutorials/ed-15.ipynb
new file mode 100644
index 00000000..a426f2ee
--- /dev/null
+++ b/docs/docs/tutorials/ed-15.ipynb
@@ -0,0 +1,296 @@
+{
+ "cells": [
+  {
+   "cell_type": "markdown",
+   "id": "0",
+   "metadata": {},
+   "source": [
+    "# Structure Refinement: Taurine, SENJU\n",
+    "\n",
+    "Crystal structure refinement of Taurine using time-of-flight single\n",
+    "crystal neutron diffraction data from SENJU at J-PARC."
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "1",
+   "metadata": {},
+   "source": [
+    "## Import Library"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "2",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "import easydiffraction as ed"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "3",
+   "metadata": {},
+   "source": [
+    "## Step 1: Define Project"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "4",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "# Create minimal project without name and description\n",
+    "project = ed.Project()"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "5",
+   "metadata": {},
+   "source": [
+    "## Step 2: Define Structure"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "6",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "# Download CIF file from repository\n",
+    "structure_path = ed.download_data(id=21, destination='data')"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "7",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.structures.add_from_cif_path(structure_path)"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "8",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.structures.show_names()"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "9",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "structure = project.structures['taurine']"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "10",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "# structure.show_as_cif()"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "11",
+   "metadata": {},
+   "source": [
+    "## Step 3: Define Experiment"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "12",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "data_path = ed.download_data(id=22, destination='data')"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "13",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.experiments.add_from_data_path(\n",
+    "    name='senju',\n",
+    "    data_path=data_path,\n",
+    "    sample_form='single crystal',\n",
+    "    beam_mode='time-of-flight',\n",
+    "    radiation_probe='neutron',\n",
+    ")"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "14",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "experiment = project.experiments['senju']"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "15",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "experiment.linked_crystal.id = 'taurine'\n",
+    "experiment.linked_crystal.scale = 1.0"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "16",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "experiment.extinction.mosaicity = 1000.0\n",
+    "experiment.extinction.radius = 100.0"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "17",
+   "metadata": {},
+   "source": [
+    "## Step 4: Perform Analysis"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "18",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.plot_meas_vs_calc(expt_name='senju')"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "19",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "experiment.linked_crystal.scale.free = True\n",
+    "experiment.extinction.radius.free = True"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "20",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "# experiment.show_as_cif()"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "21",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "# Start refinement. All parameters, which have standard uncertainties\n",
+    "# in the input CIF files, are refined by default.\n",
+    "project.analysis.fit()"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "22",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "# Show fit results summary\n",
+    "project.analysis.show_fit_results()"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "23",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "# experiment.show_as_cif()"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "24",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.experiments.show_names()"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "25",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.plot_meas_vs_calc(expt_name='senju')"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "26",
+   "metadata": {},
+   "source": [
+    "## Step 5: Show Project Summary"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "27",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.summary.show_report()"
+   ]
+  }
+ ],
+ "metadata": {
+  "jupytext": {
+   "cell_metadata_filter": "-all",
+   "main_language": "python",
+   "notebook_metadata_filter": "-all"
+  }
+ },
+ "nbformat": 4,
+ "nbformat_minor": 5
+}
diff --git a/tutorials/ed-15.py b/docs/docs/tutorials/ed-15.py
similarity index 100%
rename from tutorials/ed-15.py
rename to docs/docs/tutorials/ed-15.py
diff --git a/docs/docs/tutorials/ed-16.ipynb b/docs/docs/tutorials/ed-16.ipynb
new file mode 100644
index 00000000..688297e6
--- /dev/null
+++ b/docs/docs/tutorials/ed-16.ipynb
@@ -0,0 +1,623 @@
+{
+ "cells": [
+  {
+   "cell_type": "markdown",
+   "id": "0",
+   "metadata": {},
+   "source": [
+    "# Joint Refinement: Si, Bragg + PDF\n",
+    "\n",
+    "This example demonstrates a joint refinement of the Si crystal\n",
+    "structure combining Bragg diffraction and pair distribution function\n",
+    "(PDF) analysis. The Bragg experiment uses time-of-flight neutron\n",
+    "powder diffraction data from SEPD at Argonne, while the PDF\n",
+    "experiment uses data from NOMAD at SNS. A single shared Si structure\n",
+    "is refined simultaneously against both datasets."
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "1",
+   "metadata": {},
+   "source": [
+    "## Import Library"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "2",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "from easydiffraction import ExperimentFactory\n",
+    "from easydiffraction import Project\n",
+    "from easydiffraction import StructureFactory\n",
+    "from easydiffraction import download_data"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "3",
+   "metadata": {},
+   "source": [
+    "## Define Structure\n",
+    "\n",
+    "A single Si structure is shared between the Bragg and PDF\n",
+    "experiments. Structural parameters refined against both datasets\n",
+    "simultaneously.\n",
+    "\n",
+    "#### Create Structure"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "4",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "structure = StructureFactory.from_scratch(name='si')"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "5",
+   "metadata": {},
+   "source": [
+    "#### Set Space Group"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "6",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "structure.space_group.name_h_m = 'F d -3 m'\n",
+    "structure.space_group.it_coordinate_system_code = '1'"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "7",
+   "metadata": {},
+   "source": [
+    "#### Set Unit Cell"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "8",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "structure.cell.length_a = 5.42"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "9",
+   "metadata": {},
+   "source": [
+    "#### Set Atom Sites"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "10",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "structure.atom_sites.create(\n",
+    "    label='Si',\n",
+    "    type_symbol='Si',\n",
+    "    fract_x=0,\n",
+    "    fract_y=0,\n",
+    "    fract_z=0,\n",
+    "    wyckoff_letter='a',\n",
+    "    b_iso=0.2,\n",
+    ")"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "11",
+   "metadata": {},
+   "source": [
+    "## Define Experiments\n",
+    "\n",
+    "Two experiments are defined: one for Bragg diffraction and one for\n",
+    "PDF analysis. Both are linked to the same Si structure.\n",
+    "\n",
+    "### Experiment 1: Bragg (SEPD, TOF)\n",
+    "\n",
+    "#### Download Data"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "12",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "bragg_data_path = download_data(id=7, destination='data')"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "13",
+   "metadata": {},
+   "source": [
+    "#### Create Experiment"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "14",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "bragg_expt = ExperimentFactory.from_data_path(\n",
+    "    name='sepd', data_path=bragg_data_path, beam_mode='time-of-flight'\n",
+    ")"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "15",
+   "metadata": {},
+   "source": [
+    "#### Set Instrument"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "16",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "bragg_expt.instrument.setup_twotheta_bank = 144.845\n",
+    "bragg_expt.instrument.calib_d_to_tof_offset = -9.2\n",
+    "bragg_expt.instrument.calib_d_to_tof_linear = 7476.91\n",
+    "bragg_expt.instrument.calib_d_to_tof_quad = -1.54"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "17",
+   "metadata": {},
+   "source": [
+    "#### Set Peak Profile"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "18",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "bragg_expt.peak_profile_type = 'pseudo-voigt * ikeda-carpenter'\n",
+    "bragg_expt.peak.broad_gauss_sigma_0 = 5.0\n",
+    "bragg_expt.peak.broad_gauss_sigma_1 = 45.0\n",
+    "bragg_expt.peak.broad_gauss_sigma_2 = 1.0\n",
+    "bragg_expt.peak.broad_mix_beta_0 = 0.04221\n",
+    "bragg_expt.peak.broad_mix_beta_1 = 0.00946\n",
+    "bragg_expt.peak.asym_alpha_0 = 0.0\n",
+    "bragg_expt.peak.asym_alpha_1 = 0.5971"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "19",
+   "metadata": {},
+   "source": [
+    "#### Set Background"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "20",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "bragg_expt.background_type = 'line-segment'\n",
+    "for x in range(0, 35000, 5000):\n",
+    "    bragg_expt.background.create(id=str(x), x=x, y=200)"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "21",
+   "metadata": {},
+   "source": [
+    "#### Set Linked Phases"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "22",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "bragg_expt.linked_phases.create(id='si', scale=13.0)"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "23",
+   "metadata": {},
+   "source": [
+    "### Experiment 2: PDF (NOMAD, TOF)\n",
+    "\n",
+    "#### Download Data"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "24",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "pdf_data_path = download_data(id=5, destination='data')"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "25",
+   "metadata": {},
+   "source": [
+    "#### Create Experiment"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "26",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "pdf_expt = ExperimentFactory.from_data_path(\n",
+    "    name='nomad',\n",
+    "    data_path=pdf_data_path,\n",
+    "    beam_mode='time-of-flight',\n",
+    "    scattering_type='total',\n",
+    ")"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "27",
+   "metadata": {},
+   "source": [
+    "#### Set Peak Profile (PDF Parameters)"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "28",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "pdf_expt.peak.damp_q = 0.02\n",
+    "pdf_expt.peak.broad_q = 0.02\n",
+    "pdf_expt.peak.cutoff_q = 35.0\n",
+    "pdf_expt.peak.sharp_delta_1 = 0.001\n",
+    "pdf_expt.peak.sharp_delta_2 = 4.0\n",
+    "pdf_expt.peak.damp_particle_diameter = 0"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "29",
+   "metadata": {},
+   "source": [
+    "#### Set Linked Phases"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "30",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "pdf_expt.linked_phases.create(id='si', scale=1.0)"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "31",
+   "metadata": {},
+   "source": [
+    "## Define Project\n",
+    "\n",
+    "The project object manages the shared structure, both experiments,\n",
+    "and the analysis.\n",
+    "\n",
+    "#### Create Project"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "32",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project = Project()"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "33",
+   "metadata": {},
+   "source": [
+    "#### Add Structure"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "34",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.structures.add(structure)"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "35",
+   "metadata": {},
+   "source": [
+    "#### Add Experiments"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "36",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.experiments.add(bragg_expt)\n",
+    "project.experiments.add(pdf_expt)"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "37",
+   "metadata": {},
+   "source": [
+    "## Perform Analysis\n",
+    "\n",
+    "This section shows the joint analysis process. The calculator is\n",
+    "auto-resolved per experiment: CrysPy for Bragg, PDFfit for PDF.\n",
+    "\n",
+    "#### Set Fit Mode and Weights"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "38",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.analysis.fit_mode.mode = 'joint'\n",
+    "project.analysis.joint_fit_experiments.create(id='sepd', weight=0.7)\n",
+    "project.analysis.joint_fit_experiments.create(id='nomad', weight=0.3)"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "39",
+   "metadata": {},
+   "source": [
+    "#### Set Minimizer"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "40",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.analysis.current_minimizer = 'lmfit'"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "41",
+   "metadata": {},
+   "source": [
+    "#### Plot Measured vs Calculated (Before Fit)"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "42",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.plot_meas_vs_calc(expt_name='sepd', show_residual=False)"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "43",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.plot_meas_vs_calc(expt_name='nomad', show_residual=False)"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "44",
+   "metadata": {},
+   "source": [
+    "#### Set Fitting Parameters\n",
+    "\n",
+    "Shared structural parameters are refined against both datasets\n",
+    "simultaneously."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "45",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "structure.cell.length_a.free = True\n",
+    "structure.atom_sites['Si'].b_iso.free = True"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "46",
+   "metadata": {},
+   "source": [
+    "Bragg experiment parameters."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "47",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "bragg_expt.linked_phases['si'].scale.free = True\n",
+    "bragg_expt.instrument.calib_d_to_tof_offset.free = True\n",
+    "bragg_expt.peak.broad_gauss_sigma_0.free = True\n",
+    "bragg_expt.peak.broad_gauss_sigma_1.free = True\n",
+    "bragg_expt.peak.broad_gauss_sigma_2.free = True\n",
+    "for point in bragg_expt.background:\n",
+    "    point.y.free = True"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "48",
+   "metadata": {},
+   "source": [
+    "PDF experiment parameters."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "49",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "pdf_expt.linked_phases['si'].scale.free = True\n",
+    "pdf_expt.peak.damp_q.free = True\n",
+    "pdf_expt.peak.broad_q.free = True\n",
+    "pdf_expt.peak.sharp_delta_1.free = True\n",
+    "pdf_expt.peak.sharp_delta_2.free = True"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "50",
+   "metadata": {},
+   "source": [
+    "#### Show Free Parameters"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "51",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.analysis.show_free_params()"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "52",
+   "metadata": {},
+   "source": [
+    "#### Run Fitting"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "53",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.analysis.fit()\n",
+    "project.analysis.show_fit_results()"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "54",
+   "metadata": {},
+   "source": [
+    "#### Plot Measured vs Calculated (After Fit)"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "55",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.plot_meas_vs_calc(expt_name='sepd', show_residual=False)"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "56",
+   "metadata": {
+    "lines_to_next_cell": 2
+   },
+   "outputs": [],
+   "source": [
+    "project.plot_meas_vs_calc(expt_name='nomad', show_residual=False)"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "57",
+   "metadata": {},
+   "outputs": [],
+   "source": []
+  }
+ ],
+ "metadata": {
+  "jupytext": {
+   "cell_metadata_filter": "-all",
+   "main_language": "python",
+   "notebook_metadata_filter": "-all"
+  }
+ },
+ "nbformat": 4,
+ "nbformat_minor": 5
+}
diff --git a/tutorials/ed-16.py b/docs/docs/tutorials/ed-16.py
similarity index 100%
rename from tutorials/ed-16.py
rename to docs/docs/tutorials/ed-16.py
diff --git a/docs/docs/tutorials/ed-2.ipynb b/docs/docs/tutorials/ed-2.ipynb
new file mode 100644
index 00000000..0a4af0f3
--- /dev/null
+++ b/docs/docs/tutorials/ed-2.ipynb
@@ -0,0 +1,344 @@
+{
+ "cells": [
+  {
+   "cell_type": "markdown",
+   "id": "0",
+   "metadata": {},
+   "source": [
+    "# Structure Refinement: LBCO, HRPT\n",
+    "\n",
+    "This minimalistic example is designed to show how Rietveld refinement\n",
+    "can be performed when both the crystal structure and experiment are\n",
+    "defined directly in code. Only the experimentally measured data is\n",
+    "loaded from an external file.\n",
+    "\n",
+    "For this example, constant-wavelength neutron powder diffraction data\n",
+    "for La0.5Ba0.5CoO3 from HRPT at PSI is used.\n",
+    "\n",
+    "It does not contain any advanced features or options, and includes no\n",
+    "comments or explanations—these can be found in the other tutorials.\n",
+    "Default values are used for all parameters if not specified. Only\n",
+    "essential and self-explanatory code is provided.\n",
+    "\n",
+    "The example is intended for users who are already familiar with the\n",
+    "EasyDiffraction library and want to quickly get started with a simple\n",
+    "refinement. It is also useful for those who want to see what a\n",
+    "refinement might look like in code. For a more detailed explanation of\n",
+    "the code, please refer to the other tutorials."
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "1",
+   "metadata": {},
+   "source": [
+    "## Import Library"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "2",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "import easydiffraction as ed"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "3",
+   "metadata": {},
+   "source": [
+    "## Step 1: Define Project"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "4",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project = ed.Project()"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "5",
+   "metadata": {},
+   "source": [
+    "## Step 2: Define Structure"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "6",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.structures.create(name='lbco')"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "7",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "structure = project.structures['lbco']"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "8",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "structure.space_group.name_h_m = 'P m -3 m'\n",
+    "structure.space_group.it_coordinate_system_code = '1'"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "9",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "structure.cell.length_a = 3.88"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "10",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "structure.atom_sites.create(\n",
+    "    label='La',\n",
+    "    type_symbol='La',\n",
+    "    fract_x=0,\n",
+    "    fract_y=0,\n",
+    "    fract_z=0,\n",
+    "    wyckoff_letter='a',\n",
+    "    b_iso=0.5,\n",
+    "    occupancy=0.5,\n",
+    ")\n",
+    "structure.atom_sites.create(\n",
+    "    label='Ba',\n",
+    "    type_symbol='Ba',\n",
+    "    fract_x=0,\n",
+    "    fract_y=0,\n",
+    "    fract_z=0,\n",
+    "    wyckoff_letter='a',\n",
+    "    b_iso=0.5,\n",
+    "    occupancy=0.5,\n",
+    ")\n",
+    "structure.atom_sites.create(\n",
+    "    label='Co',\n",
+    "    type_symbol='Co',\n",
+    "    fract_x=0.5,\n",
+    "    fract_y=0.5,\n",
+    "    fract_z=0.5,\n",
+    "    wyckoff_letter='b',\n",
+    "    b_iso=0.5,\n",
+    ")\n",
+    "structure.atom_sites.create(\n",
+    "    label='O',\n",
+    "    type_symbol='O',\n",
+    "    fract_x=0,\n",
+    "    fract_y=0.5,\n",
+    "    fract_z=0.5,\n",
+    "    wyckoff_letter='c',\n",
+    "    b_iso=0.5,\n",
+    ")"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "11",
+   "metadata": {},
+   "source": [
+    "## Step 3: Define Experiment"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "12",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "data_path = ed.download_data(id=3, destination='data')"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "13",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.experiments.add_from_data_path(\n",
+    "    name='hrpt',\n",
+    "    data_path=data_path,\n",
+    "    sample_form='powder',\n",
+    "    beam_mode='constant wavelength',\n",
+    "    radiation_probe='neutron',\n",
+    ")"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "14",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "experiment = project.experiments['hrpt']"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "15",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "experiment.instrument.setup_wavelength = 1.494\n",
+    "experiment.instrument.calib_twotheta_offset = 0.6"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "16",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "experiment.peak.broad_gauss_u = 0.1\n",
+    "experiment.peak.broad_gauss_v = -0.1\n",
+    "experiment.peak.broad_gauss_w = 0.1\n",
+    "experiment.peak.broad_lorentz_y = 0.1"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "17",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "experiment.background.create(id='1', x=10, y=170)\n",
+    "experiment.background.create(id='2', x=30, y=170)\n",
+    "experiment.background.create(id='3', x=50, y=170)\n",
+    "experiment.background.create(id='4', x=110, y=170)\n",
+    "experiment.background.create(id='5', x=165, y=170)"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "18",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "experiment.excluded_regions.create(id='1', start=0, end=5)\n",
+    "experiment.excluded_regions.create(id='2', start=165, end=180)"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "19",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "experiment.linked_phases.create(id='lbco', scale=10.0)"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "20",
+   "metadata": {},
+   "source": [
+    "## Step 4: Perform Analysis"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "21",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "structure.cell.length_a.free = True\n",
+    "\n",
+    "structure.atom_sites['La'].b_iso.free = True\n",
+    "structure.atom_sites['Ba'].b_iso.free = True\n",
+    "structure.atom_sites['Co'].b_iso.free = True\n",
+    "structure.atom_sites['O'].b_iso.free = True"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "22",
+   "metadata": {
+    "lines_to_next_cell": 2
+   },
+   "outputs": [],
+   "source": [
+    "experiment.instrument.calib_twotheta_offset.free = True\n",
+    "\n",
+    "experiment.peak.broad_gauss_u.free = True\n",
+    "experiment.peak.broad_gauss_v.free = True\n",
+    "experiment.peak.broad_gauss_w.free = True\n",
+    "experiment.peak.broad_lorentz_y.free = True\n",
+    "\n",
+    "experiment.background['1'].y.free = True\n",
+    "experiment.background['2'].y.free = True\n",
+    "experiment.background['3'].y.free = True\n",
+    "experiment.background['4'].y.free = True\n",
+    "experiment.background['5'].y.free = True\n",
+    "\n",
+    "experiment.linked_phases['lbco'].scale.free = True"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "23",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.analysis.fit()\n",
+    "project.analysis.show_fit_results()"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "24",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.plot_meas_vs_calc(expt_name='hrpt', show_residual=True)"
+   ]
+  }
+ ],
+ "metadata": {
+  "jupytext": {
+   "cell_metadata_filter": "-all",
+   "main_language": "python",
+   "notebook_metadata_filter": "-all"
+  }
+ },
+ "nbformat": 4,
+ "nbformat_minor": 5
+}
diff --git a/tutorials/ed-2.py b/docs/docs/tutorials/ed-2.py
similarity index 100%
rename from tutorials/ed-2.py
rename to docs/docs/tutorials/ed-2.py
diff --git a/docs/docs/tutorials/ed-3.ipynb b/docs/docs/tutorials/ed-3.ipynb
new file mode 100644
index 00000000..0fadb404
--- /dev/null
+++ b/docs/docs/tutorials/ed-3.ipynb
@@ -0,0 +1,1805 @@
+{
+ "cells": [
+  {
+   "cell_type": "markdown",
+   "id": "0",
+   "metadata": {},
+   "source": [
+    "# Structure Refinement: LBCO, HRPT\n",
+    "\n",
+    "This example demonstrates how to use the EasyDiffraction API in a\n",
+    "simplified, user-friendly manner that closely follows the GUI workflow\n",
+    "for a Rietveld refinement of La0.5Ba0.5CoO3 crystal structure using\n",
+    "constant wavelength neutron powder diffraction data from HRPT at PSI.\n",
+    "\n",
+    "It is intended for users with minimal programming experience who want\n",
+    "to learn how to perform standard crystal structure fitting using\n",
+    "diffraction data. This script covers creating a project, adding\n",
+    "crystal structures and experiments, performing analysis, and refining\n",
+    "parameters.\n",
+    "\n",
+    "Only a single import of `easydiffraction` is required, and all\n",
+    "operations are performed through high-level components of the\n",
+    "`project` object, such as `project.structures`,\n",
+    "`project.experiments`, and `project.analysis`. The `project` object is\n",
+    "the main container for all information."
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "1",
+   "metadata": {},
+   "source": [
+    "## Import Library"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "2",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "import easydiffraction as ed"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "3",
+   "metadata": {},
+   "source": [
+    "## Step 1: Create a Project\n",
+    "\n",
+    "This section explains how to create a project and define its metadata."
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "4",
+   "metadata": {},
+   "source": [
+    "#### Create Project"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "5",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project = ed.Project(name='lbco_hrpt')"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "6",
+   "metadata": {},
+   "source": [
+    "#### Set Project Metadata"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "7",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.info.title = 'La0.5Ba0.5CoO3 at HRPT@PSI'\n",
+    "project.info.description = \"\"\"This project demonstrates a standard\n",
+    "refinement of La0.5Ba0.5CoO3, which crystallizes in a perovskite-type\n",
+    "structure, using neutron powder diffraction data collected in constant\n",
+    "wavelength mode at the HRPT diffractometer (PSI).\"\"\""
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "8",
+   "metadata": {},
+   "source": [
+    "#### Show Project Metadata as CIF"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "9",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.info.show_as_cif()"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "10",
+   "metadata": {},
+   "source": [
+    "#### Save Project\n",
+    "\n",
+    "When saving the project for the first time, you need to specify the\n",
+    "directory path. In the example below, the project is saved to a\n",
+    "temporary location defined by the system."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "11",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.save_as(dir_path='lbco_hrpt', temporary=True)"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "12",
+   "metadata": {},
+   "source": [
+    "#### Set Up Data Plotter"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "13",
+   "metadata": {},
+   "source": [
+    "Show supported plotting engines."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "14",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.plotter.show_supported_engines()"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "15",
+   "metadata": {},
+   "source": [
+    "Show current plotting configuration."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "16",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.plotter.show_config()"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "17",
+   "metadata": {},
+   "source": [
+    "Set plotting engine."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "18",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "# Keep the auto-selected engine. Alternatively, you can uncomment the\n",
+    "# line below to explicitly set the engine to the required one.\n",
+    "# project.plotter.engine = 'plotly'"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "19",
+   "metadata": {},
+   "source": [
+    "## Step 2: Define Structure\n",
+    "\n",
+    "This section shows how to add structures and modify their\n",
+    "parameters."
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "20",
+   "metadata": {},
+   "source": [
+    "#### Add Structure"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "21",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.structures.create(name='lbco')"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "22",
+   "metadata": {},
+   "source": [
+    "#### Show Defined Structures\n",
+    "\n",
+    "Show the names of the crystal structures added. These names are used\n",
+    "to access the structure using the syntax:\n",
+    "`project.structures[name]`. All structure parameters can be accessed\n",
+    "via the `project` object."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "23",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.structures.show_names()"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "24",
+   "metadata": {},
+   "source": [
+    "#### Set Space Group\n",
+    "\n",
+    "Modify the default space group parameters."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "25",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.structures['lbco'].space_group.name_h_m = 'P m -3 m'\n",
+    "project.structures['lbco'].space_group.it_coordinate_system_code = '1'"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "26",
+   "metadata": {},
+   "source": [
+    "#### Set Unit Cell\n",
+    "\n",
+    "Modify the default unit cell parameters."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "27",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.structures['lbco'].cell.length_a = 3.88"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "28",
+   "metadata": {},
+   "source": [
+    "#### Set Atom Sites\n",
+    "\n",
+    "Add atom sites to the structure."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "29",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.structures['lbco'].atom_sites.create(\n",
+    "    label='La',\n",
+    "    type_symbol='La',\n",
+    "    fract_x=0,\n",
+    "    fract_y=0,\n",
+    "    fract_z=0,\n",
+    "    wyckoff_letter='a',\n",
+    "    b_iso=0.5,\n",
+    "    occupancy=0.5,\n",
+    ")\n",
+    "project.structures['lbco'].atom_sites.create(\n",
+    "    label='Ba',\n",
+    "    type_symbol='Ba',\n",
+    "    fract_x=0,\n",
+    "    fract_y=0,\n",
+    "    fract_z=0,\n",
+    "    wyckoff_letter='a',\n",
+    "    b_iso=0.5,\n",
+    "    occupancy=0.5,\n",
+    ")\n",
+    "project.structures['lbco'].atom_sites.create(\n",
+    "    label='Co',\n",
+    "    type_symbol='Co',\n",
+    "    fract_x=0.5,\n",
+    "    fract_y=0.5,\n",
+    "    fract_z=0.5,\n",
+    "    wyckoff_letter='b',\n",
+    "    b_iso=0.5,\n",
+    ")\n",
+    "project.structures['lbco'].atom_sites.create(\n",
+    "    label='O',\n",
+    "    type_symbol='O',\n",
+    "    fract_x=0,\n",
+    "    fract_y=0.5,\n",
+    "    fract_z=0.5,\n",
+    "    wyckoff_letter='c',\n",
+    "    b_iso=0.5,\n",
+    ")"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "30",
+   "metadata": {},
+   "source": [
+    "#### Show Structure as CIF"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "31",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.structures['lbco'].show_as_cif()"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "32",
+   "metadata": {},
+   "source": [
+    "#### Show Structure Structure"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "33",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.structures['lbco'].show()"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "34",
+   "metadata": {},
+   "source": [
+    "#### Save Project State\n",
+    "\n",
+    "Save the project state after adding the structure. This ensures\n",
+    "that all changes are stored and can be accessed later. The project\n",
+    "state is saved in the directory specified during project creation."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "35",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.save()"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "36",
+   "metadata": {},
+   "source": [
+    "## Step 3: Define Experiment\n",
+    "\n",
+    "This section shows how to add experiments, configure their parameters,\n",
+    "and link the structures defined in the previous step."
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "37",
+   "metadata": {},
+   "source": [
+    "#### Download Measured Data\n",
+    "\n",
+    "Download the data file from the EasyDiffraction repository on GitHub."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "38",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "data_path = ed.download_data(id=3, destination='data')"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "39",
+   "metadata": {},
+   "source": [
+    "#### Add Diffraction Experiment"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "40",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.experiments.add_from_data_path(\n",
+    "    name='hrpt',\n",
+    "    data_path=data_path,\n",
+    "    sample_form='powder',\n",
+    "    beam_mode='constant wavelength',\n",
+    "    radiation_probe='neutron',\n",
+    ")"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "41",
+   "metadata": {},
+   "source": [
+    "#### Show Defined Experiments"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "42",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.experiments.show_names()"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "43",
+   "metadata": {},
+   "source": [
+    "#### Show Measured Data"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "44",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.plot_meas(expt_name='hrpt')"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "45",
+   "metadata": {},
+   "source": [
+    "#### Set Instrument\n",
+    "\n",
+    "Modify the default instrument parameters."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "46",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.experiments['hrpt'].instrument.setup_wavelength = 1.494\n",
+    "project.experiments['hrpt'].instrument.calib_twotheta_offset = 0.6"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "47",
+   "metadata": {},
+   "source": [
+    "#### Set Peak Profile\n",
+    "\n",
+    "Show supported peak profile types."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "48",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.experiments['hrpt'].show_supported_peak_profile_types()"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "49",
+   "metadata": {},
+   "source": [
+    "Show the current peak profile type."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "50",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.experiments['hrpt'].show_current_peak_profile_type()"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "51",
+   "metadata": {},
+   "source": [
+    "Select the desired peak profile type."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "52",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.experiments['hrpt'].peak_profile_type = 'pseudo-voigt'"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "53",
+   "metadata": {},
+   "source": [
+    "Modify default peak profile parameters."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "54",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.experiments['hrpt'].peak.broad_gauss_u = 0.1\n",
+    "project.experiments['hrpt'].peak.broad_gauss_v = -0.1\n",
+    "project.experiments['hrpt'].peak.broad_gauss_w = 0.1\n",
+    "project.experiments['hrpt'].peak.broad_lorentz_x = 0\n",
+    "project.experiments['hrpt'].peak.broad_lorentz_y = 0.1"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "55",
+   "metadata": {},
+   "source": [
+    "#### Set Background"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "56",
+   "metadata": {},
+   "source": [
+    "Show supported background types."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "57",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.experiments['hrpt'].show_supported_background_types()"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "58",
+   "metadata": {},
+   "source": [
+    "Show current background type."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "59",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.experiments['hrpt'].show_current_background_type()"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "60",
+   "metadata": {},
+   "source": [
+    "Select the desired background type."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "61",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.experiments['hrpt'].background_type = 'line-segment'"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "62",
+   "metadata": {},
+   "source": [
+    "Add background points."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "63",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.experiments['hrpt'].background.create(id='10', x=10, y=170)\n",
+    "project.experiments['hrpt'].background.create(id='30', x=30, y=170)\n",
+    "project.experiments['hrpt'].background.create(id='50', x=50, y=170)\n",
+    "project.experiments['hrpt'].background.create(id='110', x=110, y=170)\n",
+    "project.experiments['hrpt'].background.create(id='165', x=165, y=170)"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "64",
+   "metadata": {},
+   "source": [
+    "Show current background points."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "65",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.experiments['hrpt'].background.show()"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "66",
+   "metadata": {},
+   "source": [
+    "#### Set Linked Phases\n",
+    "\n",
+    "Link the structure defined in the previous step to the experiment."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "67",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.experiments['hrpt'].linked_phases.create(id='lbco', scale=10.0)"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "68",
+   "metadata": {},
+   "source": [
+    "#### Show Experiment as CIF"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "69",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.experiments['hrpt'].show_as_cif()"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "70",
+   "metadata": {},
+   "source": [
+    "#### Save Project State"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "71",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.save()"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "72",
+   "metadata": {},
+   "source": [
+    "## Step 4: Perform Analysis\n",
+    "\n",
+    "This section explains the analysis process, including how to set up\n",
+    "calculation and fitting engines.\n",
+    "\n",
+    "#### Set Calculator\n",
+    "\n",
+    "Show supported calculation engines for this experiment."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "73",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.experiments['hrpt'].show_supported_calculator_types()"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "74",
+   "metadata": {},
+   "source": [
+    "Show current calculation engine for this experiment."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "75",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.experiments['hrpt'].show_current_calculator_type()"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "76",
+   "metadata": {},
+   "source": [
+    "Select the desired calculation engine."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "77",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.experiments['hrpt'].calculator_type = 'cryspy'"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "78",
+   "metadata": {},
+   "source": [
+    "#### Show Calculated Data"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "79",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.plot_calc(expt_name='hrpt')"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "80",
+   "metadata": {},
+   "source": [
+    "#### Plot Measured vs Calculated"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "81",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.plot_meas_vs_calc(expt_name='hrpt', show_residual=True)"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "82",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.plot_meas_vs_calc(expt_name='hrpt', x_min=38, x_max=41, show_residual=True)"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "83",
+   "metadata": {},
+   "source": [
+    "#### Show Parameters\n",
+    "\n",
+    "Show all parameters of the project."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "84",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "# project.analysis.show_all_params()"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "85",
+   "metadata": {},
+   "source": [
+    "Show all fittable parameters."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "86",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.analysis.show_fittable_params()"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "87",
+   "metadata": {},
+   "source": [
+    "Show only free parameters."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "88",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.analysis.show_free_params()"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "89",
+   "metadata": {},
+   "source": [
+    "Show how to access parameters in the code."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "90",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "# project.analysis.how_to_access_parameters()"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "91",
+   "metadata": {},
+   "source": [
+    "#### Set Fit Mode\n",
+    "\n",
+    "Show supported fit modes."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "92",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.analysis.show_supported_fit_mode_types()"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "93",
+   "metadata": {},
+   "source": [
+    "Show current fit mode."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "94",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.analysis.show_current_fit_mode_type()"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "95",
+   "metadata": {},
+   "source": [
+    "Select desired fit mode."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "96",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.analysis.fit_mode.mode = 'single'"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "97",
+   "metadata": {},
+   "source": [
+    "#### Set Minimizer\n",
+    "\n",
+    "Show supported fitting engines."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "98",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.analysis.show_available_minimizers()"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "99",
+   "metadata": {},
+   "source": [
+    "Show current fitting engine."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "100",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.analysis.show_current_minimizer()"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "101",
+   "metadata": {},
+   "source": [
+    "Select desired fitting engine."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "102",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.analysis.current_minimizer = 'lmfit'"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "103",
+   "metadata": {},
+   "source": [
+    "### Perform Fit 1/5\n",
+    "\n",
+    "Set structure parameters to be refined."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "104",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.structures['lbco'].cell.length_a.free = True"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "105",
+   "metadata": {},
+   "source": [
+    "Set experiment parameters to be refined."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "106",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.experiments['hrpt'].linked_phases['lbco'].scale.free = True\n",
+    "project.experiments['hrpt'].instrument.calib_twotheta_offset.free = True\n",
+    "project.experiments['hrpt'].background['10'].y.free = True\n",
+    "project.experiments['hrpt'].background['30'].y.free = True\n",
+    "project.experiments['hrpt'].background['50'].y.free = True\n",
+    "project.experiments['hrpt'].background['110'].y.free = True\n",
+    "project.experiments['hrpt'].background['165'].y.free = True"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "107",
+   "metadata": {},
+   "source": [
+    "Show free parameters after selection."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "108",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.analysis.show_free_params()"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "109",
+   "metadata": {},
+   "source": [
+    "#### Run Fitting"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "110",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.analysis.fit()\n",
+    "project.analysis.show_fit_results()"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "111",
+   "metadata": {},
+   "source": [
+    "#### Plot Measured vs Calculated"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "112",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.plot_meas_vs_calc(expt_name='hrpt', show_residual=True)"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "113",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.plot_meas_vs_calc(expt_name='hrpt', x_min=38, x_max=41, show_residual=True)"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "114",
+   "metadata": {},
+   "source": [
+    "#### Save Project State"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "115",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.save_as(dir_path='lbco_hrpt', temporary=True)"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "116",
+   "metadata": {},
+   "source": [
+    "### Perform Fit 2/5\n",
+    "\n",
+    "Set more parameters to be refined."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "117",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.experiments['hrpt'].peak.broad_gauss_u.free = True\n",
+    "project.experiments['hrpt'].peak.broad_gauss_v.free = True\n",
+    "project.experiments['hrpt'].peak.broad_gauss_w.free = True\n",
+    "project.experiments['hrpt'].peak.broad_lorentz_y.free = True"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "118",
+   "metadata": {},
+   "source": [
+    "Show free parameters after selection."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "119",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.analysis.show_free_params()"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "120",
+   "metadata": {},
+   "source": [
+    "#### Run Fitting"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "121",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.analysis.fit()\n",
+    "project.analysis.show_fit_results()"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "122",
+   "metadata": {},
+   "source": [
+    "#### Plot Measured vs Calculated"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "123",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.plot_meas_vs_calc(expt_name='hrpt', show_residual=True)"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "124",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.plot_meas_vs_calc(expt_name='hrpt', x_min=38, x_max=41, show_residual=True)"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "125",
+   "metadata": {},
+   "source": [
+    "#### Save Project State"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "126",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.save_as(dir_path='lbco_hrpt', temporary=True)"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "127",
+   "metadata": {},
+   "source": [
+    "### Perform Fit 3/5\n",
+    "\n",
+    "Set more parameters to be refined."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "128",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.structures['lbco'].atom_sites['La'].b_iso.free = True\n",
+    "project.structures['lbco'].atom_sites['Ba'].b_iso.free = True\n",
+    "project.structures['lbco'].atom_sites['Co'].b_iso.free = True\n",
+    "project.structures['lbco'].atom_sites['O'].b_iso.free = True"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "129",
+   "metadata": {},
+   "source": [
+    "Show free parameters after selection."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "130",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.analysis.show_free_params()"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "131",
+   "metadata": {},
+   "source": [
+    "#### Run Fitting"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "132",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.analysis.fit()\n",
+    "project.analysis.show_fit_results()"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "133",
+   "metadata": {},
+   "source": [
+    "#### Plot Measured vs Calculated"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "134",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.plot_meas_vs_calc(expt_name='hrpt', show_residual=True)"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "135",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.plot_meas_vs_calc(expt_name='hrpt', x_min=38, x_max=41, show_residual=True)"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "136",
+   "metadata": {},
+   "source": [
+    "#### Save Project State"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "137",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.save_as(dir_path='lbco_hrpt', temporary=True)"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "138",
+   "metadata": {},
+   "source": [
+    "### Perform Fit 4/5\n",
+    "\n",
+    "#### Set Constraints\n",
+    "\n",
+    "Set aliases for parameters."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "139",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.analysis.aliases.create(\n",
+    "    label='biso_La',\n",
+    "    param_uid=project.structures['lbco'].atom_sites['La'].b_iso.uid,\n",
+    ")\n",
+    "project.analysis.aliases.create(\n",
+    "    label='biso_Ba',\n",
+    "    param_uid=project.structures['lbco'].atom_sites['Ba'].b_iso.uid,\n",
+    ")"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "140",
+   "metadata": {},
+   "source": [
+    "Set constraints."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "141",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.analysis.constraints.create(lhs_alias='biso_Ba', rhs_expr='biso_La')"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "142",
+   "metadata": {},
+   "source": [
+    "Show defined constraints."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "143",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.analysis.show_constraints()"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "144",
+   "metadata": {},
+   "source": [
+    "Show free parameters before applying constraints."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "145",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.analysis.show_free_params()"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "146",
+   "metadata": {},
+   "source": [
+    "Apply constraints."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "147",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.analysis.apply_constraints()"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "148",
+   "metadata": {},
+   "source": [
+    "Show free parameters after applying constraints."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "149",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.analysis.show_free_params()"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "150",
+   "metadata": {},
+   "source": [
+    "#### Run Fitting"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "151",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.analysis.fit()\n",
+    "project.analysis.show_fit_results()"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "152",
+   "metadata": {},
+   "source": [
+    "#### Plot Measured vs Calculated"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "153",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.plot_meas_vs_calc(expt_name='hrpt', show_residual=True)"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "154",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.plot_meas_vs_calc(expt_name='hrpt', x_min=38, x_max=41, show_residual=True)"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "155",
+   "metadata": {},
+   "source": [
+    "#### Save Project State"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "156",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.save_as(dir_path='lbco_hrpt', temporary=True)"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "157",
+   "metadata": {},
+   "source": [
+    "### Perform Fit 5/5\n",
+    "\n",
+    "#### Set Constraints\n",
+    "\n",
+    "Set more aliases for parameters."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "158",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.analysis.aliases.create(\n",
+    "    label='occ_La',\n",
+    "    param_uid=project.structures['lbco'].atom_sites['La'].occupancy.uid,\n",
+    ")\n",
+    "project.analysis.aliases.create(\n",
+    "    label='occ_Ba',\n",
+    "    param_uid=project.structures['lbco'].atom_sites['Ba'].occupancy.uid,\n",
+    ")"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "159",
+   "metadata": {},
+   "source": [
+    "Set more constraints."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "160",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.analysis.constraints.create(\n",
+    "    lhs_alias='occ_Ba',\n",
+    "    rhs_expr='1 - occ_La',\n",
+    ")"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "161",
+   "metadata": {},
+   "source": [
+    "Show defined constraints."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "162",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.analysis.show_constraints()"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "163",
+   "metadata": {},
+   "source": [
+    "Apply constraints."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "164",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.analysis.apply_constraints()"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "165",
+   "metadata": {},
+   "source": [
+    "Set structure parameters to be refined."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "166",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.structures['lbco'].atom_sites['La'].occupancy.free = True"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "167",
+   "metadata": {},
+   "source": [
+    "Show free parameters after selection."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "168",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.analysis.show_free_params()"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "169",
+   "metadata": {},
+   "source": [
+    "#### Run Fitting"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "170",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.analysis.fit()\n",
+    "project.analysis.show_fit_results()"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "171",
+   "metadata": {},
+   "source": [
+    "#### Plot Measured vs Calculated"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "172",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.plot_meas_vs_calc(expt_name='hrpt', show_residual=True)"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "173",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.plot_meas_vs_calc(expt_name='hrpt', x_min=38, x_max=41, show_residual=True)"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "174",
+   "metadata": {},
+   "source": [
+    "#### Save Project State"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "175",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.save_as(dir_path='lbco_hrpt', temporary=True)"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "176",
+   "metadata": {},
+   "source": [
+    "## Step 5: Summary\n",
+    "\n",
+    "This final section shows how to review the results of the analysis."
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "177",
+   "metadata": {},
+   "source": [
+    "#### Show Project Summary"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "178",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.summary.show_report()"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "179",
+   "metadata": {},
+   "outputs": [],
+   "source": []
+  }
+ ],
+ "metadata": {
+  "jupytext": {
+   "cell_metadata_filter": "-all",
+   "main_language": "python",
+   "notebook_metadata_filter": "-all"
+  }
+ },
+ "nbformat": 4,
+ "nbformat_minor": 5
+}
diff --git a/tutorials/ed-3.py b/docs/docs/tutorials/ed-3.py
similarity index 100%
rename from tutorials/ed-3.py
rename to docs/docs/tutorials/ed-3.py
diff --git a/docs/docs/tutorials/ed-4.ipynb b/docs/docs/tutorials/ed-4.ipynb
new file mode 100644
index 00000000..0b784054
--- /dev/null
+++ b/docs/docs/tutorials/ed-4.ipynb
@@ -0,0 +1,705 @@
+{
+ "cells": [
+  {
+   "cell_type": "markdown",
+   "id": "0",
+   "metadata": {},
+   "source": [
+    "# Structure Refinement: PbSO4, NPD + XRD\n",
+    "\n",
+    "This example demonstrates a more advanced use of the EasyDiffraction\n",
+    "library by explicitly creating and configuring structures and\n",
+    "experiments before adding them to a project. It could be more suitable\n",
+    "for users who are interested in creating custom workflows. This\n",
+    "tutorial provides minimal explanation and is intended for users\n",
+    "already familiar with EasyDiffraction.\n",
+    "\n",
+    "The tutorial covers a Rietveld refinement of PbSO4 crystal structure\n",
+    "based on the joint fit of both X-ray and neutron diffraction data."
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "1",
+   "metadata": {},
+   "source": [
+    "## Import Library"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "2",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "from easydiffraction import ExperimentFactory\n",
+    "from easydiffraction import Project\n",
+    "from easydiffraction import StructureFactory\n",
+    "from easydiffraction import download_data"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "3",
+   "metadata": {},
+   "source": [
+    "## Define Structure\n",
+    "\n",
+    "This section shows how to add structures and modify their\n",
+    "parameters.\n",
+    "\n",
+    "#### Create Structure"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "4",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "structure = StructureFactory.from_scratch(name='pbso4')"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "5",
+   "metadata": {},
+   "source": [
+    "#### Set Space Group"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "6",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "structure.space_group.name_h_m = 'P n m a'"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "7",
+   "metadata": {},
+   "source": [
+    "#### Set Unit Cell"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "8",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "structure.cell.length_a = 8.47\n",
+    "structure.cell.length_b = 5.39\n",
+    "structure.cell.length_c = 6.95"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "9",
+   "metadata": {},
+   "source": [
+    "#### Set Atom Sites"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "10",
+   "metadata": {
+    "lines_to_next_cell": 2
+   },
+   "outputs": [],
+   "source": [
+    "structure.atom_sites.create(\n",
+    "    label='Pb',\n",
+    "    type_symbol='Pb',\n",
+    "    fract_x=0.1876,\n",
+    "    fract_y=0.25,\n",
+    "    fract_z=0.167,\n",
+    "    wyckoff_letter='c',\n",
+    "    b_iso=1.37,\n",
+    ")\n",
+    "structure.atom_sites.create(\n",
+    "    label='S',\n",
+    "    type_symbol='S',\n",
+    "    fract_x=0.0654,\n",
+    "    fract_y=0.25,\n",
+    "    fract_z=0.684,\n",
+    "    wyckoff_letter='c',\n",
+    "    b_iso=0.3777,\n",
+    ")\n",
+    "structure.atom_sites.create(\n",
+    "    label='O1',\n",
+    "    type_symbol='O',\n",
+    "    fract_x=0.9082,\n",
+    "    fract_y=0.25,\n",
+    "    fract_z=0.5954,\n",
+    "    wyckoff_letter='c',\n",
+    "    b_iso=1.9764,\n",
+    ")\n",
+    "structure.atom_sites.create(\n",
+    "    label='O2',\n",
+    "    type_symbol='O',\n",
+    "    fract_x=0.1935,\n",
+    "    fract_y=0.25,\n",
+    "    fract_z=0.5432,\n",
+    "    wyckoff_letter='c',\n",
+    "    b_iso=1.4456,\n",
+    ")\n",
+    "structure.atom_sites.create(\n",
+    "    label='O3',\n",
+    "    type_symbol='O',\n",
+    "    fract_x=0.0811,\n",
+    "    fract_y=0.0272,\n",
+    "    fract_z=0.8086,\n",
+    "    wyckoff_letter='d',\n",
+    "    b_iso=1.2822,\n",
+    ")"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "11",
+   "metadata": {},
+   "source": [
+    "## Define Experiments\n",
+    "\n",
+    "This section shows how to add experiments, configure their parameters,\n",
+    "and link the structures defined in the previous step.\n",
+    "\n",
+    "### Experiment 1: npd\n",
+    "\n",
+    "#### Download Data"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "12",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "data_path1 = download_data(id=13, destination='data')"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "13",
+   "metadata": {},
+   "source": [
+    "#### Create Experiment"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "14",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "expt1 = ExperimentFactory.from_data_path(\n",
+    "    name='npd',\n",
+    "    data_path=data_path1,\n",
+    "    radiation_probe='neutron',\n",
+    ")"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "15",
+   "metadata": {},
+   "source": [
+    "#### Set Instrument"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "16",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "expt1.instrument.setup_wavelength = 1.91\n",
+    "expt1.instrument.calib_twotheta_offset = -0.1406"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "17",
+   "metadata": {},
+   "source": [
+    "#### Set Peak Profile"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "18",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "expt1.peak.broad_gauss_u = 0.139\n",
+    "expt1.peak.broad_gauss_v = -0.412\n",
+    "expt1.peak.broad_gauss_w = 0.386\n",
+    "expt1.peak.broad_lorentz_x = 0\n",
+    "expt1.peak.broad_lorentz_y = 0.088"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "19",
+   "metadata": {},
+   "source": [
+    "#### Set Background"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "20",
+   "metadata": {},
+   "source": [
+    "Select the background type."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "21",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "expt1.background_type = 'line-segment'"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "22",
+   "metadata": {},
+   "source": [
+    "Add background points."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "23",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "for id, x, y in [\n",
+    "    ('1', 11.0, 206.1624),\n",
+    "    ('2', 15.0, 194.75),\n",
+    "    ('3', 20.0, 194.505),\n",
+    "    ('4', 30.0, 188.4375),\n",
+    "    ('5', 50.0, 207.7633),\n",
+    "    ('6', 70.0, 201.7002),\n",
+    "    ('7', 120.0, 244.4525),\n",
+    "    ('8', 153.0, 226.0595),\n",
+    "]:\n",
+    "    expt1.background.create(id=id, x=x, y=y)"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "24",
+   "metadata": {},
+   "source": [
+    "#### Set Linked Phases"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "25",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "expt1.linked_phases.create(id='pbso4', scale=1.5)"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "26",
+   "metadata": {},
+   "source": [
+    "### Experiment 2: xrd\n",
+    "\n",
+    "#### Download Data"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "27",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "data_path2 = download_data(id=16, destination='data')"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "28",
+   "metadata": {},
+   "source": [
+    "#### Create Experiment"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "29",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "expt2 = ExperimentFactory.from_data_path(\n",
+    "    name='xrd',\n",
+    "    data_path=data_path2,\n",
+    "    radiation_probe='xray',\n",
+    ")"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "30",
+   "metadata": {},
+   "source": [
+    "#### Set Instrument"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "31",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "expt2.instrument.setup_wavelength = 1.540567\n",
+    "expt2.instrument.calib_twotheta_offset = -0.05181"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "32",
+   "metadata": {},
+   "source": [
+    "#### Set Peak Profile"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "33",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "expt2.peak.broad_gauss_u = 0.304138\n",
+    "expt2.peak.broad_gauss_v = -0.112622\n",
+    "expt2.peak.broad_gauss_w = 0.021272\n",
+    "expt2.peak.broad_lorentz_x = 0\n",
+    "expt2.peak.broad_lorentz_y = 0.057691"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "34",
+   "metadata": {},
+   "source": [
+    "#### Set Background"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "35",
+   "metadata": {},
+   "source": [
+    "Select background type."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "36",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "expt2.background_type = 'chebyshev'"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "37",
+   "metadata": {},
+   "source": [
+    "Add background points."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "38",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "for id, x, y in [\n",
+    "    ('1', 0, 119.195),\n",
+    "    ('2', 1, 6.221),\n",
+    "    ('3', 2, -45.725),\n",
+    "    ('4', 3, 8.119),\n",
+    "    ('5', 4, 54.552),\n",
+    "    ('6', 5, -20.661),\n",
+    "]:\n",
+    "    expt2.background.create(id=id, order=x, coef=y)"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "39",
+   "metadata": {},
+   "source": [
+    "#### Set Linked Phases"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "40",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "expt2.linked_phases.create(id='pbso4', scale=0.001)"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "41",
+   "metadata": {},
+   "source": [
+    "## Define Project\n",
+    "\n",
+    "The project object is used to manage structures, experiments, and\n",
+    "analysis.\n",
+    "\n",
+    "#### Create Project"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "42",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project = Project()"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "43",
+   "metadata": {},
+   "source": [
+    "#### Add Structure"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "44",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.structures.add(structure)"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "45",
+   "metadata": {},
+   "source": [
+    "#### Add Experiments"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "46",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.experiments.add(expt1)\n",
+    "project.experiments.add(expt2)"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "47",
+   "metadata": {},
+   "source": [
+    "## Perform Analysis\n",
+    "\n",
+    "This section outlines the analysis process, including how to configure\n",
+    "calculation and fitting engines.\n",
+    "\n",
+    "#### Set Fit Mode"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "48",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.analysis.fit_mode.mode = 'joint'"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "49",
+   "metadata": {},
+   "source": [
+    "#### Set Minimizer"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "50",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.analysis.current_minimizer = 'lmfit'"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "51",
+   "metadata": {},
+   "source": [
+    "#### Set Fitting Parameters\n",
+    "\n",
+    "Set structure parameters to be optimized."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "52",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "structure.cell.length_a.free = True\n",
+    "structure.cell.length_b.free = True\n",
+    "structure.cell.length_c.free = True"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "53",
+   "metadata": {},
+   "source": [
+    "Set experiment parameters to be optimized."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "54",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "expt1.linked_phases['pbso4'].scale.free = True\n",
+    "\n",
+    "expt1.instrument.calib_twotheta_offset.free = True\n",
+    "\n",
+    "expt1.peak.broad_gauss_u.free = True\n",
+    "expt1.peak.broad_gauss_v.free = True\n",
+    "expt1.peak.broad_gauss_w.free = True\n",
+    "expt1.peak.broad_lorentz_y.free = True"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "55",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "expt2.linked_phases['pbso4'].scale.free = True\n",
+    "\n",
+    "expt2.instrument.calib_twotheta_offset.free = True\n",
+    "\n",
+    "expt2.peak.broad_gauss_u.free = True\n",
+    "expt2.peak.broad_gauss_v.free = True\n",
+    "expt2.peak.broad_gauss_w.free = True\n",
+    "expt2.peak.broad_lorentz_y.free = True\n",
+    "\n",
+    "for term in expt2.background:\n",
+    "    term.coef.free = True"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "56",
+   "metadata": {},
+   "source": [
+    "#### Perform Fit"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "57",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.analysis.fit()\n",
+    "project.analysis.show_fit_results()"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "58",
+   "metadata": {},
+   "source": [
+    "#### Plot Measured vs Calculated"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "59",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.plot_meas_vs_calc(expt_name='npd', x_min=35.5, x_max=38.3, show_residual=True)"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "60",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.plot_meas_vs_calc(expt_name='xrd', x_min=29.0, x_max=30.4, show_residual=True)"
+   ]
+  }
+ ],
+ "metadata": {
+  "jupytext": {
+   "cell_metadata_filter": "-all",
+   "main_language": "python",
+   "notebook_metadata_filter": "-all"
+  }
+ },
+ "nbformat": 4,
+ "nbformat_minor": 5
+}
diff --git a/tutorials/ed-4.py b/docs/docs/tutorials/ed-4.py
similarity index 100%
rename from tutorials/ed-4.py
rename to docs/docs/tutorials/ed-4.py
diff --git a/docs/docs/tutorials/ed-5.ipynb b/docs/docs/tutorials/ed-5.ipynb
new file mode 100644
index 00000000..2ee5ec1a
--- /dev/null
+++ b/docs/docs/tutorials/ed-5.ipynb
@@ -0,0 +1,638 @@
+{
+ "cells": [
+  {
+   "cell_type": "markdown",
+   "id": "0",
+   "metadata": {},
+   "source": [
+    "# Structure Refinement: Co2SiO4, D20\n",
+    "\n",
+    "This example demonstrates a Rietveld refinement of Co2SiO4 crystal\n",
+    "structure using constant wavelength neutron powder diffraction data\n",
+    "from D20 at ILL."
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "1",
+   "metadata": {},
+   "source": [
+    "## Import Library"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "2",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "from easydiffraction import ExperimentFactory\n",
+    "from easydiffraction import Project\n",
+    "from easydiffraction import StructureFactory\n",
+    "from easydiffraction import download_data"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "3",
+   "metadata": {},
+   "source": [
+    "## Define Structure\n",
+    "\n",
+    "This section shows how to add structures and modify their\n",
+    "parameters.\n",
+    "\n",
+    "#### Create Structure"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "4",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "structure = StructureFactory.from_scratch(name='cosio')"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "5",
+   "metadata": {},
+   "source": [
+    "#### Set Space Group"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "6",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "structure.space_group.name_h_m = 'P n m a'\n",
+    "structure.space_group.it_coordinate_system_code = 'abc'"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "7",
+   "metadata": {},
+   "source": [
+    "#### Set Unit Cell"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "8",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "structure.cell.length_a = 10.3\n",
+    "structure.cell.length_b = 6.0\n",
+    "structure.cell.length_c = 4.8"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "9",
+   "metadata": {},
+   "source": [
+    "#### Set Atom Sites"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "10",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "structure.atom_sites.create(\n",
+    "    label='Co1',\n",
+    "    type_symbol='Co',\n",
+    "    fract_x=0,\n",
+    "    fract_y=0,\n",
+    "    fract_z=0,\n",
+    "    wyckoff_letter='a',\n",
+    "    b_iso=0.5,\n",
+    ")\n",
+    "structure.atom_sites.create(\n",
+    "    label='Co2',\n",
+    "    type_symbol='Co',\n",
+    "    fract_x=0.279,\n",
+    "    fract_y=0.25,\n",
+    "    fract_z=0.985,\n",
+    "    wyckoff_letter='c',\n",
+    "    b_iso=0.5,\n",
+    ")\n",
+    "structure.atom_sites.create(\n",
+    "    label='Si',\n",
+    "    type_symbol='Si',\n",
+    "    fract_x=0.094,\n",
+    "    fract_y=0.25,\n",
+    "    fract_z=0.429,\n",
+    "    wyckoff_letter='c',\n",
+    "    b_iso=0.5,\n",
+    ")\n",
+    "structure.atom_sites.create(\n",
+    "    label='O1',\n",
+    "    type_symbol='O',\n",
+    "    fract_x=0.091,\n",
+    "    fract_y=0.25,\n",
+    "    fract_z=0.771,\n",
+    "    wyckoff_letter='c',\n",
+    "    b_iso=0.5,\n",
+    ")\n",
+    "structure.atom_sites.create(\n",
+    "    label='O2',\n",
+    "    type_symbol='O',\n",
+    "    fract_x=0.448,\n",
+    "    fract_y=0.25,\n",
+    "    fract_z=0.217,\n",
+    "    wyckoff_letter='c',\n",
+    "    b_iso=0.5,\n",
+    ")\n",
+    "structure.atom_sites.create(\n",
+    "    label='O3',\n",
+    "    type_symbol='O',\n",
+    "    fract_x=0.164,\n",
+    "    fract_y=0.032,\n",
+    "    fract_z=0.28,\n",
+    "    wyckoff_letter='d',\n",
+    "    b_iso=0.5,\n",
+    ")"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "11",
+   "metadata": {},
+   "source": [
+    "## Define Experiment\n",
+    "\n",
+    "This section shows how to add experiments, configure their parameters,\n",
+    "and link the structures defined in the previous step.\n",
+    "\n",
+    "#### Download Measured Data"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "12",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "data_path = download_data(id=12, destination='data')"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "13",
+   "metadata": {},
+   "source": [
+    "#### Create Experiment"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "14",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "expt = ExperimentFactory.from_data_path(name='d20', data_path=data_path)"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "15",
+   "metadata": {},
+   "source": [
+    "#### Set Instrument"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "16",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "expt.instrument.setup_wavelength = 1.87\n",
+    "expt.instrument.calib_twotheta_offset = 0.1"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "17",
+   "metadata": {},
+   "source": [
+    "#### Set Peak Profile"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "18",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "expt.peak.broad_gauss_u = 0.3\n",
+    "expt.peak.broad_gauss_v = -0.5\n",
+    "expt.peak.broad_gauss_w = 0.4"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "19",
+   "metadata": {},
+   "source": [
+    "#### Set Background"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "20",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "expt.background.create(id='1', x=8, y=500)\n",
+    "expt.background.create(id='2', x=9, y=500)\n",
+    "expt.background.create(id='3', x=10, y=500)\n",
+    "expt.background.create(id='4', x=11, y=500)\n",
+    "expt.background.create(id='5', x=12, y=500)\n",
+    "expt.background.create(id='6', x=15, y=500)\n",
+    "expt.background.create(id='7', x=25, y=500)\n",
+    "expt.background.create(id='8', x=30, y=500)\n",
+    "expt.background.create(id='9', x=50, y=500)\n",
+    "expt.background.create(id='10', x=70, y=500)\n",
+    "expt.background.create(id='11', x=90, y=500)\n",
+    "expt.background.create(id='12', x=110, y=500)\n",
+    "expt.background.create(id='13', x=130, y=500)\n",
+    "expt.background.create(id='14', x=150, y=500)"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "21",
+   "metadata": {},
+   "source": [
+    "#### Set Linked Phases"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "22",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "expt.linked_phases.create(id='cosio', scale=1.0)"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "23",
+   "metadata": {},
+   "source": [
+    "## Define Project\n",
+    "\n",
+    "The project object is used to manage the structure, experiment, and\n",
+    "analysis.\n",
+    "\n",
+    "#### Create Project"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "24",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project = Project()"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "25",
+   "metadata": {},
+   "source": [
+    "#### Set Plotting Engine"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "26",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "# Keep the auto-selected engine. Alternatively, you can uncomment the\n",
+    "# line below to explicitly set the engine to the required one.\n",
+    "# project.plotter.engine = 'plotly'"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "27",
+   "metadata": {},
+   "source": [
+    "#### Add Structure"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "28",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.structures.add(structure)"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "29",
+   "metadata": {},
+   "source": [
+    "#### Add Experiment"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "30",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.experiments.add(expt)"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "31",
+   "metadata": {},
+   "source": [
+    "## Perform Analysis\n",
+    "\n",
+    "This section shows the analysis process, including how to set up\n",
+    "calculation and fitting engines.\n",
+    "\n",
+    "#### Set Minimizer"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "32",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.analysis.current_minimizer = 'lmfit'"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "33",
+   "metadata": {},
+   "source": [
+    "#### Plot Measured vs Calculated"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "34",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.plot_meas_vs_calc(expt_name='d20', show_residual=True)"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "35",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.plot_meas_vs_calc(expt_name='d20', x_min=41, x_max=54, show_residual=True)"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "36",
+   "metadata": {},
+   "source": [
+    "#### Set Free Parameters"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "37",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "structure.cell.length_a.free = True\n",
+    "structure.cell.length_b.free = True\n",
+    "structure.cell.length_c.free = True\n",
+    "\n",
+    "structure.atom_sites['Co2'].fract_x.free = True\n",
+    "structure.atom_sites['Co2'].fract_z.free = True\n",
+    "structure.atom_sites['Si'].fract_x.free = True\n",
+    "structure.atom_sites['Si'].fract_z.free = True\n",
+    "structure.atom_sites['O1'].fract_x.free = True\n",
+    "structure.atom_sites['O1'].fract_z.free = True\n",
+    "structure.atom_sites['O2'].fract_x.free = True\n",
+    "structure.atom_sites['O2'].fract_z.free = True\n",
+    "structure.atom_sites['O3'].fract_x.free = True\n",
+    "structure.atom_sites['O3'].fract_y.free = True\n",
+    "structure.atom_sites['O3'].fract_z.free = True\n",
+    "\n",
+    "structure.atom_sites['Co1'].b_iso.free = True\n",
+    "structure.atom_sites['Co2'].b_iso.free = True\n",
+    "structure.atom_sites['Si'].b_iso.free = True\n",
+    "structure.atom_sites['O1'].b_iso.free = True\n",
+    "structure.atom_sites['O2'].b_iso.free = True\n",
+    "structure.atom_sites['O3'].b_iso.free = True"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "38",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "expt.linked_phases['cosio'].scale.free = True\n",
+    "\n",
+    "expt.instrument.calib_twotheta_offset.free = True\n",
+    "\n",
+    "expt.peak.broad_gauss_u.free = True\n",
+    "expt.peak.broad_gauss_v.free = True\n",
+    "expt.peak.broad_gauss_w.free = True\n",
+    "expt.peak.broad_lorentz_y.free = True\n",
+    "\n",
+    "for point in expt.background:\n",
+    "    point.y.free = True"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "39",
+   "metadata": {},
+   "source": [
+    "#### Set Constraints\n",
+    "\n",
+    "Set aliases for parameters."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "40",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.analysis.aliases.create(\n",
+    "    label='biso_Co1',\n",
+    "    param_uid=project.structures['cosio'].atom_sites['Co1'].b_iso.uid,\n",
+    ")\n",
+    "project.analysis.aliases.create(\n",
+    "    label='biso_Co2',\n",
+    "    param_uid=project.structures['cosio'].atom_sites['Co2'].b_iso.uid,\n",
+    ")"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "41",
+   "metadata": {},
+   "source": [
+    "Set constraints."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "42",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.analysis.constraints.create(\n",
+    "    lhs_alias='biso_Co2',\n",
+    "    rhs_expr='biso_Co1',\n",
+    ")"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "43",
+   "metadata": {},
+   "source": [
+    "Apply constraints."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "44",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.analysis.apply_constraints()"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "45",
+   "metadata": {},
+   "source": [
+    "#### Run Fitting"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "46",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.analysis.fit()\n",
+    "project.analysis.show_fit_results()"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "47",
+   "metadata": {},
+   "source": [
+    "#### Plot Measured vs Calculated"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "48",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.plot_meas_vs_calc(expt_name='d20', show_residual=True)"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "49",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.plot_meas_vs_calc(expt_name='d20', x_min=41, x_max=54, show_residual=True)"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "50",
+   "metadata": {},
+   "source": [
+    "## Summary\n",
+    "\n",
+    "This final section shows how to review the results of the analysis."
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "51",
+   "metadata": {},
+   "source": [
+    "#### Show Project Summary"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "52",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.summary.show_report()"
+   ]
+  }
+ ],
+ "metadata": {
+  "jupytext": {
+   "cell_metadata_filter": "-all",
+   "main_language": "python",
+   "notebook_metadata_filter": "-all"
+  }
+ },
+ "nbformat": 4,
+ "nbformat_minor": 5
+}
diff --git a/tutorials/ed-5.py b/docs/docs/tutorials/ed-5.py
similarity index 100%
rename from tutorials/ed-5.py
rename to docs/docs/tutorials/ed-5.py
diff --git a/docs/docs/tutorials/ed-6.ipynb b/docs/docs/tutorials/ed-6.ipynb
new file mode 100644
index 00000000..599c09eb
--- /dev/null
+++ b/docs/docs/tutorials/ed-6.ipynb
@@ -0,0 +1,849 @@
+{
+ "cells": [
+  {
+   "cell_type": "markdown",
+   "id": "0",
+   "metadata": {},
+   "source": [
+    "# Structure Refinement: HS, HRPT\n",
+    "\n",
+    "This example demonstrates a Rietveld refinement of HS crystal\n",
+    "structure using constant wavelength neutron powder diffraction data\n",
+    "from HRPT at PSI."
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "1",
+   "metadata": {},
+   "source": [
+    "## Import Library"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "2",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "from easydiffraction import ExperimentFactory\n",
+    "from easydiffraction import Project\n",
+    "from easydiffraction import StructureFactory\n",
+    "from easydiffraction import download_data"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "3",
+   "metadata": {},
+   "source": [
+    "## Define Structure\n",
+    "\n",
+    "This section shows how to add structures and modify their\n",
+    "parameters.\n",
+    "\n",
+    "#### Create Structure"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "4",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "structure = StructureFactory.from_scratch(name='hs')"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "5",
+   "metadata": {},
+   "source": [
+    "#### Set Space Group"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "6",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "structure.space_group.name_h_m = 'R -3 m'\n",
+    "structure.space_group.it_coordinate_system_code = 'h'"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "7",
+   "metadata": {
+    "lines_to_next_cell": 2
+   },
+   "source": [
+    "#### Set Unit Cell"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "8",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "structure.cell.length_a = 6.9\n",
+    "structure.cell.length_c = 14.1"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "9",
+   "metadata": {},
+   "source": [
+    "#### Set Atom Sites"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "10",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "structure.atom_sites.create(\n",
+    "    label='Zn',\n",
+    "    type_symbol='Zn',\n",
+    "    fract_x=0,\n",
+    "    fract_y=0,\n",
+    "    fract_z=0.5,\n",
+    "    wyckoff_letter='b',\n",
+    "    b_iso=0.5,\n",
+    ")\n",
+    "structure.atom_sites.create(\n",
+    "    label='Cu',\n",
+    "    type_symbol='Cu',\n",
+    "    fract_x=0.5,\n",
+    "    fract_y=0,\n",
+    "    fract_z=0,\n",
+    "    wyckoff_letter='e',\n",
+    "    b_iso=0.5,\n",
+    ")\n",
+    "structure.atom_sites.create(\n",
+    "    label='O',\n",
+    "    type_symbol='O',\n",
+    "    fract_x=0.21,\n",
+    "    fract_y=-0.21,\n",
+    "    fract_z=0.06,\n",
+    "    wyckoff_letter='h',\n",
+    "    b_iso=0.5,\n",
+    ")\n",
+    "structure.atom_sites.create(\n",
+    "    label='Cl',\n",
+    "    type_symbol='Cl',\n",
+    "    fract_x=0,\n",
+    "    fract_y=0,\n",
+    "    fract_z=0.197,\n",
+    "    wyckoff_letter='c',\n",
+    "    b_iso=0.5,\n",
+    ")\n",
+    "structure.atom_sites.create(\n",
+    "    label='H',\n",
+    "    type_symbol='2H',\n",
+    "    fract_x=0.13,\n",
+    "    fract_y=-0.13,\n",
+    "    fract_z=0.08,\n",
+    "    wyckoff_letter='h',\n",
+    "    b_iso=0.5,\n",
+    ")"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "11",
+   "metadata": {},
+   "source": [
+    "## Define Experiment\n",
+    "\n",
+    "This section shows how to add experiments, configure their parameters,\n",
+    "and link the structures defined in the previous step.\n",
+    "\n",
+    "#### Download Measured Data"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "12",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "data_path = download_data(id=11, destination='data')"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "13",
+   "metadata": {},
+   "source": [
+    "#### Create Experiment"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "14",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "expt = ExperimentFactory.from_data_path(name='hrpt', data_path=data_path)"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "15",
+   "metadata": {},
+   "source": [
+    "#### Set Instrument"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "16",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "expt.instrument.setup_wavelength = 1.89\n",
+    "expt.instrument.calib_twotheta_offset = 0.0"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "17",
+   "metadata": {},
+   "source": [
+    "#### Set Peak Profile"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "18",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "expt.peak.broad_gauss_u = 0.1\n",
+    "expt.peak.broad_gauss_v = -0.2\n",
+    "expt.peak.broad_gauss_w = 0.2\n",
+    "expt.peak.broad_lorentz_x = 0.0\n",
+    "expt.peak.broad_lorentz_y = 0"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "19",
+   "metadata": {},
+   "source": [
+    "#### Set Background"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "20",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "expt.background.create(id='1', x=4.4196, y=500)\n",
+    "expt.background.create(id='2', x=6.6207, y=500)\n",
+    "expt.background.create(id='3', x=10.4918, y=500)\n",
+    "expt.background.create(id='4', x=15.4634, y=500)\n",
+    "expt.background.create(id='5', x=45.6041, y=500)\n",
+    "expt.background.create(id='6', x=74.6844, y=500)\n",
+    "expt.background.create(id='7', x=103.4187, y=500)\n",
+    "expt.background.create(id='8', x=121.6311, y=500)\n",
+    "expt.background.create(id='9', x=159.4116, y=500)"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "21",
+   "metadata": {},
+   "source": [
+    "#### Set Linked Phases"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "22",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "expt.linked_phases.create(id='hs', scale=0.5)"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "23",
+   "metadata": {},
+   "source": [
+    "## Define Project\n",
+    "\n",
+    "The project object is used to manage the structure, experiment, and\n",
+    "analysis.\n",
+    "\n",
+    "#### Create Project"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "24",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project = Project()"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "25",
+   "metadata": {},
+   "source": [
+    "#### Set Plotting Engine"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "26",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "# Keep the auto-selected engine. Alternatively, you can uncomment the\n",
+    "# line below to explicitly set the engine to the required one.\n",
+    "# project.plotter.engine = 'plotly'"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "27",
+   "metadata": {},
+   "source": [
+    "#### Add Structure"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "28",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.structures.add(structure)"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "29",
+   "metadata": {},
+   "source": [
+    "#### Add Experiment"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "30",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.experiments.add(expt)"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "31",
+   "metadata": {},
+   "source": [
+    "## Perform Analysis\n",
+    "\n",
+    "This section shows the analysis process, including how to set up\n",
+    "calculation and fitting engines.\n",
+    "\n",
+    "#### Set Minimizer"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "32",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.analysis.current_minimizer = 'lmfit'"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "33",
+   "metadata": {},
+   "source": [
+    "#### Plot Measured vs Calculated"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "34",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.plot_meas_vs_calc(expt_name='hrpt', show_residual=True)"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "35",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.plot_meas_vs_calc(expt_name='hrpt', x_min=48, x_max=51, show_residual=True)"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "36",
+   "metadata": {},
+   "source": [
+    "### Perform Fit 1/5\n",
+    "\n",
+    "Set parameters to be refined."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "37",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "structure.cell.length_a.free = True\n",
+    "structure.cell.length_c.free = True\n",
+    "\n",
+    "expt.linked_phases['hs'].scale.free = True\n",
+    "expt.instrument.calib_twotheta_offset.free = True"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "38",
+   "metadata": {},
+   "source": [
+    "Show free parameters after selection."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "39",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.analysis.show_free_params()"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "40",
+   "metadata": {},
+   "source": [
+    "#### Run Fitting"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "41",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.analysis.fit()"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "42",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.analysis.show_fit_results()"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "43",
+   "metadata": {},
+   "source": [
+    "#### Plot Measured vs Calculated"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "44",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.plot_meas_vs_calc(expt_name='hrpt', show_residual=True)"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "45",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.plot_meas_vs_calc(expt_name='hrpt', x_min=48, x_max=51, show_residual=True)"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "46",
+   "metadata": {},
+   "source": [
+    "### Perform Fit 2/5\n",
+    "\n",
+    "Set more parameters to be refined."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "47",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "expt.peak.broad_gauss_u.free = True\n",
+    "expt.peak.broad_gauss_v.free = True\n",
+    "expt.peak.broad_gauss_w.free = True\n",
+    "expt.peak.broad_lorentz_x.free = True\n",
+    "\n",
+    "for point in expt.background:\n",
+    "    point.y.free = True"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "48",
+   "metadata": {},
+   "source": [
+    "Show free parameters after selection."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "49",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.analysis.show_free_params()"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "50",
+   "metadata": {},
+   "source": [
+    "#### Run Fitting"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "51",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.analysis.fit()"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "52",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.analysis.show_fit_results()"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "53",
+   "metadata": {},
+   "source": [
+    "#### Plot Measured vs Calculated"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "54",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.plot_meas_vs_calc(expt_name='hrpt', show_residual=True)"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "55",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.plot_meas_vs_calc(expt_name='hrpt', x_min=48, x_max=51, show_residual=True)"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "56",
+   "metadata": {},
+   "source": [
+    "### Perform Fit 3/5\n",
+    "\n",
+    "Set more parameters to be refined."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "57",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "structure.atom_sites['O'].fract_x.free = True\n",
+    "structure.atom_sites['O'].fract_z.free = True\n",
+    "structure.atom_sites['Cl'].fract_z.free = True\n",
+    "structure.atom_sites['H'].fract_x.free = True\n",
+    "structure.atom_sites['H'].fract_z.free = True"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "58",
+   "metadata": {},
+   "source": [
+    "Show free parameters after selection."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "59",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.analysis.show_free_params()"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "60",
+   "metadata": {},
+   "source": [
+    "#### Run Fitting"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "61",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.analysis.fit()"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "62",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.analysis.show_fit_results()"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "63",
+   "metadata": {},
+   "source": [
+    "#### Plot Measured vs Calculated"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "64",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.plot_meas_vs_calc(expt_name='hrpt', show_residual=True)"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "65",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.plot_meas_vs_calc(expt_name='hrpt', x_min=48, x_max=51, show_residual=True)"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "66",
+   "metadata": {},
+   "source": [
+    "### Perform Fit 4/5\n",
+    "\n",
+    "Set more parameters to be refined."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "67",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "structure.atom_sites['Zn'].b_iso.free = True\n",
+    "structure.atom_sites['Cu'].b_iso.free = True\n",
+    "structure.atom_sites['O'].b_iso.free = True\n",
+    "structure.atom_sites['Cl'].b_iso.free = True\n",
+    "structure.atom_sites['H'].b_iso.free = True"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "68",
+   "metadata": {},
+   "source": [
+    "Show free parameters after selection."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "69",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.analysis.show_free_params()"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "70",
+   "metadata": {},
+   "source": [
+    "#### Run Fitting"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "71",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.analysis.fit()"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "72",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.analysis.show_fit_results()"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "73",
+   "metadata": {},
+   "source": [
+    "#### Plot Measured vs Calculated"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "74",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.plot_meas_vs_calc(expt_name='hrpt', show_residual=True)"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "75",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.plot_meas_vs_calc(expt_name='hrpt', x_min=48, x_max=51, show_residual=True)"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "76",
+   "metadata": {},
+   "source": [
+    "## Summary\n",
+    "\n",
+    "This final section shows how to review the results of the analysis."
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "77",
+   "metadata": {},
+   "source": [
+    "#### Show Project Summary"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "78",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.summary.show_report()"
+   ]
+  }
+ ],
+ "metadata": {
+  "jupytext": {
+   "cell_metadata_filter": "-all",
+   "main_language": "python",
+   "notebook_metadata_filter": "-all"
+  }
+ },
+ "nbformat": 4,
+ "nbformat_minor": 5
+}
diff --git a/tutorials/ed-6.py b/docs/docs/tutorials/ed-6.py
similarity index 100%
rename from tutorials/ed-6.py
rename to docs/docs/tutorials/ed-6.py
diff --git a/docs/docs/tutorials/ed-7.ipynb b/docs/docs/tutorials/ed-7.ipynb
new file mode 100644
index 00000000..869dc723
--- /dev/null
+++ b/docs/docs/tutorials/ed-7.ipynb
@@ -0,0 +1,741 @@
+{
+ "cells": [
+  {
+   "cell_type": "markdown",
+   "id": "0",
+   "metadata": {},
+   "source": [
+    "# Structure Refinement: Si, SEPD\n",
+    "\n",
+    "This example demonstrates a Rietveld refinement of Si crystal\n",
+    "structure using time-of-flight neutron powder diffraction data from\n",
+    "SEPD at Argonne."
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "1",
+   "metadata": {},
+   "source": [
+    "## Import Library"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "2",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "from easydiffraction import ExperimentFactory\n",
+    "from easydiffraction import Project\n",
+    "from easydiffraction import StructureFactory\n",
+    "from easydiffraction import download_data"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "3",
+   "metadata": {},
+   "source": [
+    "## Define Structure\n",
+    "\n",
+    "This section shows how to add structures and modify their\n",
+    "parameters.\n",
+    "\n",
+    "#### Create Structure"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "4",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "structure = StructureFactory.from_scratch(name='si')"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "5",
+   "metadata": {},
+   "source": [
+    "#### Set Space Group"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "6",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "structure.space_group.name_h_m = 'F d -3 m'\n",
+    "structure.space_group.it_coordinate_system_code = '2'"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "7",
+   "metadata": {},
+   "source": [
+    "#### Set Unit Cell"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "8",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "structure.cell.length_a = 5.431"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "9",
+   "metadata": {},
+   "source": [
+    "#### Set Atom Sites"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "10",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "structure.atom_sites.create(\n",
+    "    label='Si',\n",
+    "    type_symbol='Si',\n",
+    "    fract_x=0.125,\n",
+    "    fract_y=0.125,\n",
+    "    fract_z=0.125,\n",
+    "    b_iso=0.5,\n",
+    ")"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "11",
+   "metadata": {},
+   "source": [
+    "## Define Experiment\n",
+    "\n",
+    "This section shows how to add experiments, configure their\n",
+    "parameters, and link the structures defined in the previous step.\n",
+    "\n",
+    "#### Download Measured Data"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "12",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "data_path = download_data(id=7, destination='data')"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "13",
+   "metadata": {},
+   "source": [
+    "#### Create Experiment"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "14",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "expt = ExperimentFactory.from_data_path(\n",
+    "    name='sepd', data_path=data_path, beam_mode='time-of-flight'\n",
+    ")"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "15",
+   "metadata": {},
+   "source": [
+    "#### Set Instrument"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "16",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "expt.instrument.setup_twotheta_bank = 144.845\n",
+    "expt.instrument.calib_d_to_tof_offset = 0.0\n",
+    "expt.instrument.calib_d_to_tof_linear = 7476.91\n",
+    "expt.instrument.calib_d_to_tof_quad = -1.54"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "17",
+   "metadata": {},
+   "source": [
+    "#### Set Peak Profile"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "18",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "expt.peak_profile_type = 'pseudo-voigt * ikeda-carpenter'\n",
+    "expt.peak.broad_gauss_sigma_0 = 3.0\n",
+    "expt.peak.broad_gauss_sigma_1 = 40.0\n",
+    "expt.peak.broad_gauss_sigma_2 = 2.0\n",
+    "expt.peak.broad_mix_beta_0 = 0.04221\n",
+    "expt.peak.broad_mix_beta_1 = 0.00946"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "19",
+   "metadata": {},
+   "source": [
+    "#### Set Peak Asymmetry"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "20",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "expt.peak.asym_alpha_0 = 0.0\n",
+    "expt.peak.asym_alpha_1 = 0.5971"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "21",
+   "metadata": {},
+   "source": [
+    "#### Set Background"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "22",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "expt.background_type = 'line-segment'\n",
+    "for x in range(0, 35000, 5000):\n",
+    "    expt.background.create(id=str(x), x=x, y=200)"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "23",
+   "metadata": {},
+   "source": [
+    "#### Set Linked Phases"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "24",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "expt.linked_phases.create(id='si', scale=10.0)"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "25",
+   "metadata": {},
+   "source": [
+    "## Define Project\n",
+    "\n",
+    "The project object is used to manage the structure, experiment, and\n",
+    "analysis.\n",
+    "\n",
+    "#### Create Project"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "26",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project = Project()"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "27",
+   "metadata": {},
+   "source": [
+    "#### Add Structure"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "28",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.structures.add(structure)"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "29",
+   "metadata": {},
+   "source": [
+    "#### Add Experiment"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "30",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.experiments.add(expt)"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "31",
+   "metadata": {},
+   "source": [
+    "## Perform Analysis\n",
+    "\n",
+    "This section shows the analysis process, including how to set up\n",
+    "calculation and fitting engines.\n",
+    "\n",
+    "#### Set Minimizer"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "32",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.analysis.current_minimizer = 'lmfit'"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "33",
+   "metadata": {},
+   "source": [
+    "#### Plot Measured vs Calculated"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "34",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.plot_meas_vs_calc(expt_name='sepd', show_residual=True)\n",
+    "project.plot_meas_vs_calc(expt_name='sepd', x_min=23200, x_max=23700, show_residual=True)"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "35",
+   "metadata": {},
+   "source": [
+    "### Perform Fit 1/5\n",
+    "\n",
+    "Set parameters to be refined."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "36",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "structure.cell.length_a.free = True\n",
+    "\n",
+    "expt.linked_phases['si'].scale.free = True\n",
+    "expt.instrument.calib_d_to_tof_offset.free = True"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "37",
+   "metadata": {},
+   "source": [
+    "Show free parameters after selection."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "38",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.analysis.show_free_params()"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "39",
+   "metadata": {},
+   "source": [
+    "#### Run Fitting"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "40",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.analysis.fit()\n",
+    "project.analysis.show_fit_results()"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "41",
+   "metadata": {},
+   "source": [
+    "#### Plot Measured vs Calculated"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "42",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.plot_meas_vs_calc(expt_name='sepd', show_residual=True)"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "43",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.plot_meas_vs_calc(expt_name='sepd', x_min=23200, x_max=23700, show_residual=True)"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "44",
+   "metadata": {},
+   "source": [
+    "### Perform Fit 2/5\n",
+    "\n",
+    "Set more parameters to be refined."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "45",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "for point in expt.background:\n",
+    "    point.y.free = True"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "46",
+   "metadata": {},
+   "source": [
+    "Show free parameters after selection."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "47",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.analysis.show_free_params()"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "48",
+   "metadata": {},
+   "source": [
+    "#### Run Fitting"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "49",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.analysis.fit()\n",
+    "project.analysis.show_fit_results()"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "50",
+   "metadata": {},
+   "source": [
+    "#### Plot Measured vs Calculated"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "51",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.plot_meas_vs_calc(expt_name='sepd', show_residual=True)"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "52",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.plot_meas_vs_calc(expt_name='sepd', x_min=23200, x_max=23700, show_residual=True)"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "53",
+   "metadata": {},
+   "source": [
+    "### Perform Fit 3/5\n",
+    "\n",
+    "Fix background points."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "54",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "for point in expt.background:\n",
+    "    point.y.free = False"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "55",
+   "metadata": {},
+   "source": [
+    "Set more parameters to be refined."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "56",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "expt.peak.broad_gauss_sigma_0.free = True\n",
+    "expt.peak.broad_gauss_sigma_1.free = True\n",
+    "expt.peak.broad_gauss_sigma_2.free = True"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "57",
+   "metadata": {},
+   "source": [
+    "Show free parameters after selection."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "58",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.analysis.show_free_params()"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "59",
+   "metadata": {},
+   "source": [
+    "#### Run Fitting"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "60",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.analysis.fit()\n",
+    "project.analysis.show_fit_results()"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "61",
+   "metadata": {},
+   "source": [
+    "#### Plot Measured vs Calculated"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "62",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.plot_meas_vs_calc(expt_name='sepd', show_residual=True)"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "63",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.plot_meas_vs_calc(expt_name='sepd', x_min=23200, x_max=23700, show_residual=True)"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "64",
+   "metadata": {},
+   "source": [
+    "### Perform Fit 4/5\n",
+    "\n",
+    "Set more parameters to be refined."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "65",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "structure.atom_sites['Si'].b_iso.free = True"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "66",
+   "metadata": {},
+   "source": [
+    "Show free parameters after selection."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "67",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.analysis.show_free_params()"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "68",
+   "metadata": {},
+   "source": [
+    "#### Run Fitting"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "69",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.analysis.fit()\n",
+    "project.analysis.show_fit_results()"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "70",
+   "metadata": {},
+   "source": [
+    "#### Plot Measured vs Calculated"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "71",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.plot_meas_vs_calc(expt_name='sepd', show_residual=True)"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "72",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.plot_meas_vs_calc(expt_name='sepd', x_min=23200, x_max=23700, show_residual=True)"
+   ]
+  }
+ ],
+ "metadata": {
+  "jupytext": {
+   "cell_metadata_filter": "-all",
+   "main_language": "python",
+   "notebook_metadata_filter": "-all"
+  }
+ },
+ "nbformat": 4,
+ "nbformat_minor": 5
+}
diff --git a/tutorials/ed-7.py b/docs/docs/tutorials/ed-7.py
similarity index 100%
rename from tutorials/ed-7.py
rename to docs/docs/tutorials/ed-7.py
diff --git a/docs/docs/tutorials/ed-8.ipynb b/docs/docs/tutorials/ed-8.ipynb
new file mode 100644
index 00000000..4bc42ad1
--- /dev/null
+++ b/docs/docs/tutorials/ed-8.ipynb
@@ -0,0 +1,747 @@
+{
+ "cells": [
+  {
+   "cell_type": "markdown",
+   "id": "0",
+   "metadata": {},
+   "source": [
+    "# Structure Refinement: NCAF, WISH\n",
+    "\n",
+    "This example demonstrates a Rietveld refinement of Na2Ca3Al2F14\n",
+    "crystal structure using time-of-flight neutron powder diffraction data\n",
+    "from WISH at ISIS.\n",
+    "\n",
+    "Two datasets from detector banks 5+6 and 4+7 are used for joint\n",
+    "fitting."
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "1",
+   "metadata": {},
+   "source": [
+    "## Import Library"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "2",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "from easydiffraction import ExperimentFactory\n",
+    "from easydiffraction import Project\n",
+    "from easydiffraction import StructureFactory\n",
+    "from easydiffraction import download_data"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "3",
+   "metadata": {},
+   "source": [
+    "## Define Structure\n",
+    "\n",
+    "This section covers how to add structures and modify their\n",
+    "parameters.\n",
+    "\n",
+    "#### Create Structure"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "4",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "structure = StructureFactory.from_scratch(name='ncaf')"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "5",
+   "metadata": {},
+   "source": [
+    "#### Set Space Group"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "6",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "structure.space_group.name_h_m = 'I 21 3'\n",
+    "structure.space_group.it_coordinate_system_code = '1'"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "7",
+   "metadata": {},
+   "source": [
+    "#### Set Unit Cell"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "8",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "structure.cell.length_a = 10.250256"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "9",
+   "metadata": {},
+   "source": [
+    "#### Set Atom Sites"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "10",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "structure.atom_sites.create(\n",
+    "    label='Ca',\n",
+    "    type_symbol='Ca',\n",
+    "    fract_x=0.4663,\n",
+    "    fract_y=0.0,\n",
+    "    fract_z=0.25,\n",
+    "    wyckoff_letter='b',\n",
+    "    b_iso=0.92,\n",
+    ")\n",
+    "structure.atom_sites.create(\n",
+    "    label='Al',\n",
+    "    type_symbol='Al',\n",
+    "    fract_x=0.2521,\n",
+    "    fract_y=0.2521,\n",
+    "    fract_z=0.2521,\n",
+    "    wyckoff_letter='a',\n",
+    "    b_iso=0.73,\n",
+    ")\n",
+    "structure.atom_sites.create(\n",
+    "    label='Na',\n",
+    "    type_symbol='Na',\n",
+    "    fract_x=0.0851,\n",
+    "    fract_y=0.0851,\n",
+    "    fract_z=0.0851,\n",
+    "    wyckoff_letter='a',\n",
+    "    b_iso=2.08,\n",
+    ")\n",
+    "structure.atom_sites.create(\n",
+    "    label='F1',\n",
+    "    type_symbol='F',\n",
+    "    fract_x=0.1377,\n",
+    "    fract_y=0.3054,\n",
+    "    fract_z=0.1195,\n",
+    "    wyckoff_letter='c',\n",
+    "    b_iso=0.90,\n",
+    ")\n",
+    "structure.atom_sites.create(\n",
+    "    label='F2',\n",
+    "    type_symbol='F',\n",
+    "    fract_x=0.3625,\n",
+    "    fract_y=0.3633,\n",
+    "    fract_z=0.1867,\n",
+    "    wyckoff_letter='c',\n",
+    "    b_iso=1.37,\n",
+    ")\n",
+    "structure.atom_sites.create(\n",
+    "    label='F3',\n",
+    "    type_symbol='F',\n",
+    "    fract_x=0.4612,\n",
+    "    fract_y=0.4612,\n",
+    "    fract_z=0.4612,\n",
+    "    wyckoff_letter='a',\n",
+    "    b_iso=0.88,\n",
+    ")"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "11",
+   "metadata": {},
+   "source": [
+    "## Define Experiment\n",
+    "\n",
+    "This section shows how to add experiments, configure their parameters,\n",
+    "and link the structures defined in the previous step.\n",
+    "\n",
+    "#### Download Measured Data"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "12",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "data_path56 = download_data(id=9, destination='data')"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "13",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "data_path47 = download_data(id=10, destination='data')"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "14",
+   "metadata": {},
+   "source": [
+    "#### Create Experiment"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "15",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "expt56 = ExperimentFactory.from_data_path(\n",
+    "    name='wish_5_6',\n",
+    "    data_path=data_path56,\n",
+    "    beam_mode='time-of-flight',\n",
+    ")"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "16",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "expt47 = ExperimentFactory.from_data_path(\n",
+    "    name='wish_4_7',\n",
+    "    data_path=data_path47,\n",
+    "    beam_mode='time-of-flight',\n",
+    ")"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "17",
+   "metadata": {},
+   "source": [
+    "#### Set Instrument"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "18",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "expt56.instrument.setup_twotheta_bank = 152.827\n",
+    "expt56.instrument.calib_d_to_tof_offset = -13.5\n",
+    "expt56.instrument.calib_d_to_tof_linear = 20773.0\n",
+    "expt56.instrument.calib_d_to_tof_quad = -1.08308"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "19",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "expt47.instrument.setup_twotheta_bank = 121.660\n",
+    "expt47.instrument.calib_d_to_tof_offset = -15.0\n",
+    "expt47.instrument.calib_d_to_tof_linear = 18660.0\n",
+    "expt47.instrument.calib_d_to_tof_quad = -0.47488"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "20",
+   "metadata": {},
+   "source": [
+    "#### Set Peak Profile"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "21",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "expt56.peak.broad_gauss_sigma_0 = 0.0\n",
+    "expt56.peak.broad_gauss_sigma_1 = 0.0\n",
+    "expt56.peak.broad_gauss_sigma_2 = 15.5\n",
+    "expt56.peak.broad_mix_beta_0 = 0.007\n",
+    "expt56.peak.broad_mix_beta_1 = 0.01\n",
+    "expt56.peak.asym_alpha_0 = -0.0094\n",
+    "expt56.peak.asym_alpha_1 = 0.1"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "22",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "expt47.peak.broad_gauss_sigma_0 = 0.0\n",
+    "expt47.peak.broad_gauss_sigma_1 = 29.8\n",
+    "expt47.peak.broad_gauss_sigma_2 = 18.0\n",
+    "expt47.peak.broad_mix_beta_0 = 0.006\n",
+    "expt47.peak.broad_mix_beta_1 = 0.015\n",
+    "expt47.peak.asym_alpha_0 = -0.0115\n",
+    "expt47.peak.asym_alpha_1 = 0.1"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "23",
+   "metadata": {},
+   "source": [
+    "#### Set Background"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "24",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "expt56.background_type = 'line-segment'\n",
+    "for idx, (x, y) in enumerate(\n",
+    "    [\n",
+    "        (9162, 465),\n",
+    "        (11136, 593),\n",
+    "        (13313, 497),\n",
+    "        (14906, 546),\n",
+    "        (16454, 533),\n",
+    "        (17352, 496),\n",
+    "        (18743, 428),\n",
+    "        (20179, 452),\n",
+    "        (21368, 397),\n",
+    "        (22176, 468),\n",
+    "        (22827, 477),\n",
+    "        (24644, 380),\n",
+    "        (26439, 381),\n",
+    "        (28257, 378),\n",
+    "        (31196, 343),\n",
+    "        (34034, 328),\n",
+    "        (37265, 310),\n",
+    "        (41214, 323),\n",
+    "        (44827, 283),\n",
+    "        (49830, 273),\n",
+    "        (52905, 257),\n",
+    "        (58204, 260),\n",
+    "        (62916, 261),\n",
+    "        (70186, 262),\n",
+    "        (74204, 262),\n",
+    "        (82103, 268),\n",
+    "        (91958, 268),\n",
+    "        (102712, 262),\n",
+    "    ],\n",
+    "    start=1,\n",
+    "):\n",
+    "    expt56.background.create(id=str(idx), x=x, y=y)"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "25",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "expt47.background_type = 'line-segment'\n",
+    "for idx, (x, y) in enumerate(\n",
+    "    [\n",
+    "        (9090, 488),\n",
+    "        (10672, 566),\n",
+    "        (12287, 494),\n",
+    "        (14037, 559),\n",
+    "        (15451, 529),\n",
+    "        (16764, 445),\n",
+    "        (18076, 460),\n",
+    "        (19456, 413),\n",
+    "        (20466, 511),\n",
+    "        (21880, 396),\n",
+    "        (23798, 391),\n",
+    "        (25447, 385),\n",
+    "        (28073, 349),\n",
+    "        (30058, 332),\n",
+    "        (32583, 309),\n",
+    "        (34804, 355),\n",
+    "        (37160, 318),\n",
+    "        (40324, 290),\n",
+    "        (46895, 260),\n",
+    "        (50631, 256),\n",
+    "        (54602, 246),\n",
+    "        (58439, 264),\n",
+    "        (66520, 250),\n",
+    "        (75002, 258),\n",
+    "        (83649, 257),\n",
+    "        (92770, 255),\n",
+    "        (101524, 260),\n",
+    "    ],\n",
+    "    start=1,\n",
+    "):\n",
+    "    expt47.background.create(id=str(idx), x=x, y=y)"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "26",
+   "metadata": {},
+   "source": [
+    "#### Set Linked Phases"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "27",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "expt56.linked_phases.create(id='ncaf', scale=1.0)"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "28",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "expt47.linked_phases.create(id='ncaf', scale=2.0)"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "29",
+   "metadata": {},
+   "source": [
+    "#### Set Excluded Regions"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "30",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "expt56.excluded_regions.create(id='1', start=0, end=10010)\n",
+    "expt56.excluded_regions.create(id='2', start=100010, end=200000)"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "31",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "expt47.excluded_regions.create(id='1', start=0, end=10006)\n",
+    "expt47.excluded_regions.create(id='2', start=100004, end=200000)"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "32",
+   "metadata": {},
+   "source": [
+    "## Define Project\n",
+    "\n",
+    "The project object is used to manage the structure, experiments,\n",
+    "and analysis\n",
+    "\n",
+    "#### Create Project"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "33",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project = Project()"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "34",
+   "metadata": {},
+   "source": [
+    "#### Set Plotting Engine"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "35",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "# Keep the auto-selected engine. Alternatively, you can uncomment the\n",
+    "# line below to explicitly set the engine to the required one.\n",
+    "# project.plotter.engine = 'plotly'"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "36",
+   "metadata": {},
+   "source": [
+    "#### Add Structure"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "37",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.structures.add(structure)"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "38",
+   "metadata": {},
+   "source": [
+    "#### Add Experiment"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "39",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.experiments.add(expt56)\n",
+    "project.experiments.add(expt47)"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "40",
+   "metadata": {},
+   "source": [
+    "## Perform Analysis\n",
+    "\n",
+    "This section shows the analysis process, including how to set up\n",
+    "calculation and fitting engines.\n",
+    "\n",
+    "#### Set Minimizer"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "41",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.analysis.current_minimizer = 'lmfit'"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "42",
+   "metadata": {},
+   "source": [
+    "#### Set Fit Mode"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "43",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.analysis.fit_mode.mode = 'joint'"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "44",
+   "metadata": {},
+   "source": [
+    "#### Set Free Parameters"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "45",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "structure.atom_sites['Ca'].b_iso.free = True\n",
+    "structure.atom_sites['Al'].b_iso.free = True\n",
+    "structure.atom_sites['Na'].b_iso.free = True\n",
+    "structure.atom_sites['F1'].b_iso.free = True\n",
+    "structure.atom_sites['F2'].b_iso.free = True\n",
+    "structure.atom_sites['F3'].b_iso.free = True"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "46",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "expt56.linked_phases['ncaf'].scale.free = True\n",
+    "expt56.instrument.calib_d_to_tof_offset.free = True\n",
+    "expt56.instrument.calib_d_to_tof_linear.free = True\n",
+    "expt56.peak.broad_gauss_sigma_2.free = True\n",
+    "expt56.peak.broad_mix_beta_0.free = True\n",
+    "expt56.peak.broad_mix_beta_1.free = True\n",
+    "expt56.peak.asym_alpha_1.free = True\n",
+    "\n",
+    "expt47.linked_phases['ncaf'].scale.free = True\n",
+    "expt47.instrument.calib_d_to_tof_linear.free = True\n",
+    "expt47.instrument.calib_d_to_tof_offset.free = True\n",
+    "expt47.peak.broad_gauss_sigma_2.free = True\n",
+    "expt47.peak.broad_mix_beta_0.free = True\n",
+    "expt47.peak.broad_mix_beta_1.free = True\n",
+    "expt47.peak.asym_alpha_1.free = True"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "47",
+   "metadata": {},
+   "source": [
+    "#### Plot Measured vs Calculated"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "48",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.plot_meas_vs_calc(expt_name='wish_5_6', show_residual=True)"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "49",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.plot_meas_vs_calc(expt_name='wish_4_7', show_residual=True)"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "50",
+   "metadata": {},
+   "source": [
+    "#### Run Fitting"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "51",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.analysis.fit()\n",
+    "project.analysis.show_fit_results()"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "52",
+   "metadata": {},
+   "source": [
+    "#### Plot Measured vs Calculated"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "53",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.plot_meas_vs_calc(expt_name='wish_5_6', show_residual=True)"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "54",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.plot_meas_vs_calc(expt_name='wish_4_7', show_residual=True)"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "55",
+   "metadata": {},
+   "source": [
+    "## Summary\n",
+    "\n",
+    "This final section shows how to review the results of the analysis."
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "56",
+   "metadata": {},
+   "source": [
+    "#### Show Project Summary"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "57",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.summary.show_report()"
+   ]
+  }
+ ],
+ "metadata": {
+  "jupytext": {
+   "cell_metadata_filter": "-all",
+   "main_language": "python",
+   "notebook_metadata_filter": "-all"
+  }
+ },
+ "nbformat": 4,
+ "nbformat_minor": 5
+}
diff --git a/tutorials/ed-8.py b/docs/docs/tutorials/ed-8.py
similarity index 100%
rename from tutorials/ed-8.py
rename to docs/docs/tutorials/ed-8.py
diff --git a/docs/docs/tutorials/ed-9.ipynb b/docs/docs/tutorials/ed-9.ipynb
new file mode 100644
index 00000000..735964ae
--- /dev/null
+++ b/docs/docs/tutorials/ed-9.ipynb
@@ -0,0 +1,704 @@
+{
+ "cells": [
+  {
+   "cell_type": "markdown",
+   "id": "0",
+   "metadata": {},
+   "source": [
+    "# Structure Refinement: LBCO+Si, McStas\n",
+    "\n",
+    "This example demonstrates a Rietveld refinement of La0.5Ba0.5CoO3\n",
+    "crystal structure with a small amount of Si phase using time-of-flight\n",
+    "neutron powder diffraction data simulated with McStas."
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "1",
+   "metadata": {},
+   "source": [
+    "## Import Library"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "2",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "from easydiffraction import ExperimentFactory\n",
+    "from easydiffraction import Project\n",
+    "from easydiffraction import StructureFactory\n",
+    "from easydiffraction import download_data"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "3",
+   "metadata": {},
+   "source": [
+    "## Define Structures\n",
+    "\n",
+    "This section shows how to add structures and modify their\n",
+    "parameters.\n",
+    "\n",
+    "### Create Structure 1: LBCO"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "4",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "structure_1 = StructureFactory.from_scratch(name='lbco')"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "5",
+   "metadata": {},
+   "source": [
+    "#### Set Space Group"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "6",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "structure_1.space_group.name_h_m = 'P m -3 m'\n",
+    "structure_1.space_group.it_coordinate_system_code = '1'"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "7",
+   "metadata": {},
+   "source": [
+    "#### Set Unit Cell"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "8",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "structure_1.cell.length_a = 3.8909"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "9",
+   "metadata": {},
+   "source": [
+    "#### Set Atom Sites"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "10",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "structure_1.atom_sites.create(\n",
+    "    label='La',\n",
+    "    type_symbol='La',\n",
+    "    fract_x=0,\n",
+    "    fract_y=0,\n",
+    "    fract_z=0,\n",
+    "    wyckoff_letter='a',\n",
+    "    b_iso=0.2,\n",
+    "    occupancy=0.5,\n",
+    ")\n",
+    "structure_1.atom_sites.create(\n",
+    "    label='Ba',\n",
+    "    type_symbol='Ba',\n",
+    "    fract_x=0,\n",
+    "    fract_y=0,\n",
+    "    fract_z=0,\n",
+    "    wyckoff_letter='a',\n",
+    "    b_iso=0.2,\n",
+    "    occupancy=0.5,\n",
+    ")\n",
+    "structure_1.atom_sites.create(\n",
+    "    label='Co',\n",
+    "    type_symbol='Co',\n",
+    "    fract_x=0.5,\n",
+    "    fract_y=0.5,\n",
+    "    fract_z=0.5,\n",
+    "    wyckoff_letter='b',\n",
+    "    b_iso=0.2567,\n",
+    ")\n",
+    "structure_1.atom_sites.create(\n",
+    "    label='O',\n",
+    "    type_symbol='O',\n",
+    "    fract_x=0,\n",
+    "    fract_y=0.5,\n",
+    "    fract_z=0.5,\n",
+    "    wyckoff_letter='c',\n",
+    "    b_iso=1.4041,\n",
+    ")"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "11",
+   "metadata": {},
+   "source": [
+    "### Create Structure 2: Si"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "12",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "structure_2 = StructureFactory.from_scratch(name='si')"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "13",
+   "metadata": {},
+   "source": [
+    "#### Set Space Group"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "14",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "structure_2.space_group.name_h_m = 'F d -3 m'\n",
+    "structure_2.space_group.it_coordinate_system_code = '2'"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "15",
+   "metadata": {},
+   "source": [
+    "#### Set Unit Cell"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "16",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "structure_2.cell.length_a = 5.43146"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "17",
+   "metadata": {},
+   "source": [
+    "#### Set Atom Sites"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "18",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "structure_2.atom_sites.create(\n",
+    "    label='Si',\n",
+    "    type_symbol='Si',\n",
+    "    fract_x=0.0,\n",
+    "    fract_y=0.0,\n",
+    "    fract_z=0.0,\n",
+    "    wyckoff_letter='a',\n",
+    "    b_iso=0.0,\n",
+    ")"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "19",
+   "metadata": {},
+   "source": [
+    "## Define Experiment\n",
+    "\n",
+    "This section shows how to add experiments, configure their parameters,\n",
+    "and link the structures defined in the previous step.\n",
+    "\n",
+    "#### Download Data"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "20",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "data_path = download_data(id=8, destination='data')"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "21",
+   "metadata": {},
+   "source": [
+    "#### Create Experiment"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "22",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "experiment = ExperimentFactory.from_data_path(\n",
+    "    name='mcstas',\n",
+    "    data_path=data_path,\n",
+    "    sample_form='powder',\n",
+    "    beam_mode='time-of-flight',\n",
+    "    radiation_probe='neutron',\n",
+    "    scattering_type='bragg',\n",
+    ")"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "23",
+   "metadata": {},
+   "source": [
+    "#### Set Instrument"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "24",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "experiment.instrument.setup_twotheta_bank = 94.90931761529106\n",
+    "experiment.instrument.calib_d_to_tof_offset = 0.0\n",
+    "experiment.instrument.calib_d_to_tof_linear = 58724.76869981215\n",
+    "experiment.instrument.calib_d_to_tof_quad = -0.00001"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "25",
+   "metadata": {},
+   "source": [
+    "#### Set Peak Profile"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "26",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "# experiment.peak_profile_type = 'pseudo-voigt * ikeda-carpenter'\n",
+    "experiment.peak.broad_gauss_sigma_0 = 45137\n",
+    "experiment.peak.broad_gauss_sigma_1 = -52394\n",
+    "experiment.peak.broad_gauss_sigma_2 = 22998\n",
+    "experiment.peak.broad_mix_beta_0 = 0.0055\n",
+    "experiment.peak.broad_mix_beta_1 = 0.0041\n",
+    "experiment.peak.asym_alpha_0 = 0\n",
+    "experiment.peak.asym_alpha_1 = 0.0097"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "27",
+   "metadata": {},
+   "source": [
+    "#### Set Background"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "28",
+   "metadata": {},
+   "source": [
+    "Select the background type."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "29",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "experiment.background_type = 'line-segment'"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "30",
+   "metadata": {},
+   "source": [
+    "Add background points."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "31",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "experiment.background.create(id='1', x=45000, y=0.2)\n",
+    "experiment.background.create(id='2', x=50000, y=0.2)\n",
+    "experiment.background.create(id='3', x=55000, y=0.2)\n",
+    "experiment.background.create(id='4', x=65000, y=0.2)\n",
+    "experiment.background.create(id='5', x=70000, y=0.2)\n",
+    "experiment.background.create(id='6', x=75000, y=0.2)\n",
+    "experiment.background.create(id='7', x=80000, y=0.2)\n",
+    "experiment.background.create(id='8', x=85000, y=0.2)\n",
+    "experiment.background.create(id='9', x=90000, y=0.2)\n",
+    "experiment.background.create(id='10', x=95000, y=0.2)\n",
+    "experiment.background.create(id='11', x=100000, y=0.2)\n",
+    "experiment.background.create(id='12', x=105000, y=0.2)\n",
+    "experiment.background.create(id='13', x=110000, y=0.2)"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "32",
+   "metadata": {},
+   "source": [
+    "#### Set Linked Phases"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "33",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "experiment.linked_phases.create(id='lbco', scale=4.0)\n",
+    "experiment.linked_phases.create(id='si', scale=0.2)"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "34",
+   "metadata": {},
+   "source": [
+    "## Define Project\n",
+    "\n",
+    "The project object is used to manage structures, experiments, and\n",
+    "analysis.\n",
+    "\n",
+    "#### Create Project"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "35",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project = Project()"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "36",
+   "metadata": {},
+   "source": [
+    "#### Add Structures"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "37",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.structures.add(structure_1)\n",
+    "project.structures.add(structure_2)"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "38",
+   "metadata": {},
+   "source": [
+    "#### Show Structures"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "39",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.structures.show_names()"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "40",
+   "metadata": {},
+   "source": [
+    "#### Add Experiments"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "41",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.experiments.add(experiment)"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "42",
+   "metadata": {},
+   "source": [
+    "#### Set Excluded Regions\n",
+    "\n",
+    "Show measured data as loaded from the file."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "43",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.plot_meas(expt_name='mcstas')"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "44",
+   "metadata": {},
+   "source": [
+    "Add excluded regions."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "45",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "experiment.excluded_regions.create(id='1', start=0, end=40000)\n",
+    "experiment.excluded_regions.create(id='2', start=108000, end=200000)"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "46",
+   "metadata": {},
+   "source": [
+    "Show excluded regions."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "47",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "experiment.excluded_regions.show()"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "48",
+   "metadata": {},
+   "source": [
+    "Show measured data after adding excluded regions."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "49",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.plot_meas(expt_name='mcstas')"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "50",
+   "metadata": {},
+   "source": [
+    "Show experiment as CIF."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "51",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.experiments['mcstas'].show_as_cif()"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "52",
+   "metadata": {},
+   "source": [
+    "## Perform Analysis\n",
+    "\n",
+    "This section outlines the analysis process, including how to configure\n",
+    "calculation and fitting engines.\n",
+    "\n",
+    "#### Set Minimizer"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "53",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.analysis.current_minimizer = 'lmfit'"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "54",
+   "metadata": {},
+   "source": [
+    "#### Set Fitting Parameters\n",
+    "\n",
+    "Set structure parameters to be optimized."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "55",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "structure_1.cell.length_a.free = True\n",
+    "structure_1.atom_sites['Co'].b_iso.free = True\n",
+    "structure_1.atom_sites['O'].b_iso.free = True\n",
+    "\n",
+    "structure_2.cell.length_a.free = True"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "56",
+   "metadata": {},
+   "source": [
+    "Set experiment parameters to be optimized."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "57",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "experiment.linked_phases['lbco'].scale.free = True\n",
+    "experiment.linked_phases['si'].scale.free = True\n",
+    "\n",
+    "experiment.peak.broad_gauss_sigma_0.free = True\n",
+    "experiment.peak.broad_gauss_sigma_1.free = True\n",
+    "experiment.peak.broad_gauss_sigma_2.free = True\n",
+    "\n",
+    "experiment.peak.asym_alpha_1.free = True\n",
+    "experiment.peak.broad_mix_beta_0.free = True\n",
+    "experiment.peak.broad_mix_beta_1.free = True\n",
+    "\n",
+    "for point in experiment.background:\n",
+    "    point.y.free = True"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "58",
+   "metadata": {},
+   "source": [
+    "#### Perform Fit"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "59",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.analysis.fit()\n",
+    "project.analysis.show_fit_results()"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "60",
+   "metadata": {},
+   "source": [
+    "#### Plot Measured vs Calculated"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "61",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "project.plot_meas_vs_calc(expt_name='mcstas')"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "62",
+   "metadata": {},
+   "outputs": [],
+   "source": []
+  }
+ ],
+ "metadata": {
+  "jupytext": {
+   "cell_metadata_filter": "-all",
+   "main_language": "python",
+   "notebook_metadata_filter": "-all"
+  }
+ },
+ "nbformat": 4,
+ "nbformat_minor": 5
+}
diff --git a/tutorials/ed-9.py b/docs/docs/tutorials/ed-9.py
similarity index 100%
rename from tutorials/ed-9.py
rename to docs/docs/tutorials/ed-9.py
diff --git a/tutorials/index.json b/docs/docs/tutorials/index.json
similarity index 98%
rename from tutorials/index.json
rename to docs/docs/tutorials/index.json
index 138b0e51..d40d1896 100644
--- a/tutorials/index.json
+++ b/docs/docs/tutorials/index.json
@@ -86,7 +86,7 @@
   "13": {
     "url": "https://easyscience.github.io/diffraction-lib/{version}/tutorials/ed-13/ed-13.ipynb",
     "original_name": "dmsc-summer-school-2025_analysis-powder-diffraction",
-    "title": "DMSC Summer School 2025: Powder Diffraction Analysis",
+    "title": "DMSC Summer School: Powder Diffraction Analysis",
     "description": "Comprehensive workshop tutorial covering Rietveld refinement of Si and La0.5Ba0.5CoO3 using simulated powder diffraction data",
     "level": "workshop"
   },
diff --git a/docs/docs/tutorials/index.md b/docs/docs/tutorials/index.md
new file mode 100644
index 00000000..5e406e59
--- /dev/null
+++ b/docs/docs/tutorials/index.md
@@ -0,0 +1,95 @@
+---
+icon: material/school
+---
+
+# :material-school: Tutorials
+
+This section presents a collection of **Jupyter Notebook** tutorials
+that demonstrate how to use EasyDiffraction for various tasks. These
+tutorials serve as self-contained, step-by-step **guides** to help users
+grasp the workflow of diffraction data analysis using EasyDiffraction.
+
+Instructions on how to run the tutorials are provided in the
+[:material-cog-box: Installation & Setup](../installation-and-setup/index.md#how-to-run-tutorials)
+section of the documentation.
+
+The tutorials are organized into the following categories.
+
+## Getting Started
+
+- [LBCO `quick` CIF](ed-1.ipynb) – A minimal example intended as a quick
+  reference for users already familiar with the EasyDiffraction API or
+  who want to see how Rietveld refinement of the La0.5Ba0.5CoO3 crystal
+  structure can be performed when both the structure and experiment are
+  loaded from CIF files. Data collected from constant wavelength neutron
+  powder diffraction at HRPT at PSI.
+- [LBCO `quick` `code`](ed-2.ipynb) – A minimal example intended as a
+  quick reference for users already familiar with the EasyDiffraction
+  API or who want to see an example refinement when both the structure
+  and experiment are defined directly in code. This tutorial covers a
+  Rietveld refinement of the La0.5Ba0.5CoO3 crystal structure using
+  constant wavelength neutron powder diffraction data from HRPT at PSI.
+- [LBCO `complete`](ed-3.ipynb) – Demonstrates the use of the
+  EasyDiffraction API in a simplified, user-friendly manner that closely
+  follows the GUI workflow for a Rietveld refinement of the
+  La0.5Ba0.5CoO3 crystal structure using constant wavelength neutron
+  powder diffraction data from HRPT at PSI. This tutorial provides a
+  full explanation of the workflow with detailed comments and
+  descriptions of every step, making it suitable for users who are new
+  to EasyDiffraction or those who prefer a more guided approach.
+
+## Powder Diffraction
+
+- [Co2SiO4 `pd-neut-cwl`](ed-5.ipynb) – Demonstrates a Rietveld
+  refinement of the Co2SiO4 crystal structure using constant wavelength
+  neutron powder diffraction data from D20 at ILL.
+- [HS `pd-neut-cwl`](ed-6.ipynb) – Demonstrates a Rietveld refinement of
+  the HS crystal structure using constant wavelength neutron powder
+  diffraction data from HRPT at PSI.
+- [Si `pd-neut-tof`](ed-7.ipynb) – Demonstrates a Rietveld refinement of
+  the Si crystal structure using time-of-flight neutron powder
+  diffraction data from SEPD at Argonne.
+- [NCAF `pd-neut-tof`](ed-8.ipynb) – Demonstrates a Rietveld refinement
+  of the Na2Ca3Al2F14 crystal structure using two time-of-flight neutron
+  powder diffraction datasets (from two detector banks) of the WISH
+  instrument at ISIS.
+
+## Single Crystal Diffraction
+
+- [Tb2TiO7 `sg-neut-cwl`](ed-14.ipynb) – Demonstrates structure
+  refinement of Tb2TiO7 using constant wavelength neutron single crystal
+  diffraction data from HEiDi at FRM II.
+- [Taurine `sg-neut-tof`](ed-15.ipynb) – Demonstrates structure
+  refinement of Taurine using time-of-flight neutron single crystal
+  diffraction data from SENJU at J-PARC.
+
+## Pair Distribution Function (PDF)
+
+- [Ni `pd-neut-cwl`](ed-10.ipynb) – Demonstrates a PDF analysis of Ni
+  using data collected from a constant wavelength neutron powder
+  diffraction experiment.
+- [Si `pd-neut-tof`](ed-11.ipynb) – Demonstrates a PDF analysis of Si
+  using data collected from a time-of-flight neutron powder diffraction
+  experiment at NOMAD at SNS.
+- [NaCl `pd-xray`](ed-12.ipynb) – Demonstrates a PDF analysis of NaCl
+  using data collected from an X-ray powder diffraction experiment.
+
+## Multi-Structure & Multi-Experiment Refinement
+
+- [PbSO4 NPD+XRD](ed-4.ipynb) – Joint fit of PbSO4 using X-ray and
+  neutron constant wavelength powder diffraction data.
+- [LBCO+Si McStas](ed-9.ipynb) – Multi-phase Rietveld refinement of
+  La0.5Ba0.5CoO3 with Si impurity using time-of-flight neutron data
+  simulated with McStas.
+- [Si Bragg+PDF](ed-16.ipynb) – Joint refinement of Si combining Bragg
+  diffraction (SEPD) and pair distribution function (NOMAD) analysis. A
+  single shared structure is refined simultaneously against both
+  datasets.
+
+## Workshops & Schools
+
+- [DMSC Summer School](ed-13.ipynb) – A workshop tutorial that
+  demonstrates a Rietveld refinement of the La0.5Ba0.5CoO3 crystal
+  structure using time-of-flight neutron powder diffraction data
+  simulated with McStas. This tutorial is designed for the ESS DMSC
+  Summer School.
diff --git a/docs/user-guide/analysis-workflow/analysis.md b/docs/docs/user-guide/analysis-workflow/analysis.md
similarity index 68%
rename from docs/user-guide/analysis-workflow/analysis.md
rename to docs/docs/user-guide/analysis-workflow/analysis.md
index 73086b3b..f0341519 100644
--- a/docs/user-guide/analysis-workflow/analysis.md
+++ b/docs/docs/user-guide/analysis-workflow/analysis.md
@@ -5,57 +5,62 @@ icon: material/calculator
 # :material-calculator: Analysis
 
 This section provides an overview of **diffraction data analysis** in
-EasyDiffraction, focusing on model-dependent analysis, calculation engines, and
-minimization techniques.
+EasyDiffraction, focusing on model-dependent analysis, calculation
+engines, and minimization techniques.
 
-In EasyDiffraction, we focus on **model-dependent analysis**, where a model is
-constructed based on prior knowledge of the studied system, and its parameters
-are optimized to achieve the best agreement between experimental and calculated
-diffraction data. Model-dependent analysis is widely used in neutron and X-ray
-scattering data.
+In EasyDiffraction, we focus on **model-dependent analysis**, where a
+model is constructed based on prior knowledge of the studied system, and
+its parameters are optimized to achieve the best agreement between
+experimental and calculated diffraction data. Model-dependent analysis
+is widely used in neutron and X-ray scattering data.
 
 ## Calculation
 
-EasyDiffraction relies on third-party crystallographic libraries, referred to as
-**calculation engines** or just **calculators**, to perform the calculations.
+EasyDiffraction relies on third-party crystallographic libraries,
+referred to as **calculation engines** or just **calculators**, to
+perform the calculations.
 
-The calculation engines are used to calculate the diffraction pattern for the
-defined model of the studied structure using the instrumental and other required
-experiment-related parameters, such as the wavelength, resolution, etc.
+The calculation engines are used to calculate the diffraction pattern
+for the defined model of the studied structure using the instrumental
+and other required experiment-related parameters, such as the
+wavelength, resolution, etc.
 
-You do not necessarily need the measured data to perform the calculations, but
-you need a structural model and some details about the type of experiment you
-want to simulate.
+You do not necessarily need the measured data to perform the
+calculations, but you need a structural model and some details about the
+type of experiment you want to simulate.
 
-EasyDiffraction is designed as a flexible and extensible tool that supports
-different **calculation engines** for diffraction pattern calculations.
-Currently, we integrate CrysPy, CrysFML, and PDFfit2 libraries as calculation
-engines.
+EasyDiffraction is designed as a flexible and extensible tool that
+supports different **calculation engines** for diffraction pattern
+calculations. Currently, we integrate CrysPy, CrysFML, and PDFfit2
+libraries as calculation engines.
 
 ### CrysPy Calculator
 
-[CrysPy](https://www.cryspy.fr) is a Python library originally developed for
-analysing polarised neutron diffraction data. It is now evolving into a more
-general purpose library and covers powders and single crystals, nuclear and
-(commensurate) magnetic structures, unpolarised neutron and X-ray diffraction.
+[CrysPy](https://www.cryspy.fr) is a Python library originally developed
+for analysing polarised neutron diffraction data. It is now evolving
+into a more general purpose library and covers powders and single
+crystals, nuclear and (commensurate) magnetic structures, unpolarised
+neutron and X-ray diffraction.
 
 ### CrysFML Calculator
 
-[CrysFML](https://code.ill.fr/scientific-software/CrysFML2008) library is a
-collection of Fortran modules for crystallographic computations. It is used in
-the software package [FullProf](https://www.ill.eu/sites/fullprof/), and we are
-currently working on its integration into EasyDiffraction.
+[CrysFML](https://code.ill.fr/scientific-software/CrysFML2008) library
+is a collection of Fortran modules for crystallographic computations. It
+is used in the software package
+[FullProf](https://www.ill.eu/sites/fullprof/), and we are currently
+working on its integration into EasyDiffraction.
 
 ### PDFfit2 Calculator
 
-[PDFfit2](https://github.com/diffpy/diffpy.pdffit2/) is a Python library for
-calculating the pair distribution function (PDF) from crystallographic models.
+[PDFfit2](https://github.com/diffpy/diffpy.pdffit2/) is a Python library
+for calculating the pair distribution function (PDF) from
+crystallographic models.
 
 ### Set Calculator
 
-The calculator is automatically selected based on the experiment type (e.g.,
-`cryspy` for Bragg diffraction, `pdffit` for total scattering). To show the
-supported calculation engines for a specific experiment:
+The calculator is automatically selected based on the experiment type
+(e.g., `cryspy` for Bragg diffraction, `pdffit` for total scattering).
+To show the supported calculation engines for a specific experiment:
 
 ```python
 project.experiments['hrpt'].show_supported_calculator_types()
@@ -77,9 +82,9 @@ project.experiments['hrpt'].calculator_type = 'cryspy'
 
 ## Minimization / Optimization
 
-The process of refining model parameters involves iterating through multiple
-steps until the calculated data sufficiently matches the experimental data. This
-process is illustrated in the following diagram:
+The process of refining model parameters involves iterating through
+multiple steps until the calculated data sufficiently matches the
+experimental data. This process is illustrated in the following diagram:
 
 ```mermaid
 flowchart LR
@@ -95,31 +100,34 @@ flowchart LR
     d-- Threshold<br/>reached -->e
 ```
 
-Like the calculation engines, EasyDiffraction is designed to utilize various
-third-party libraries for model refinement and parameter optimization. These
-libraries provide robust curve fitting and uncertainty estimation tools.
+Like the calculation engines, EasyDiffraction is designed to utilize
+various third-party libraries for model refinement and parameter
+optimization. These libraries provide robust curve fitting and
+uncertainty estimation tools.
 
 ### Lmfit Minimizer
 
 Most of the examples in this section will use the
-[lmfit](https://lmfit.github.io/lmfit-py/) package, which provides a high-level
-interface to non-linear optimisation and curve fitting problems for Python. It
-is one of the tools that can be used to fit models to the experimental data.
+[lmfit](https://lmfit.github.io/lmfit-py/) package, which provides a
+high-level interface to non-linear optimisation and curve fitting
+problems for Python. It is one of the tools that can be used to fit
+models to the experimental data.
 
 ### Bumps Minimizer
 
 Another package that can be used for the same purpose is
-[bumps](https://bumps.readthedocs.io/en/latest/). In addition to traditional
-optimizers which search for the best minimum they can find in the search space,
-bumps provides Bayesian uncertainty analysis which explores all viable minima
-and finds confidence intervals on the parameters based on uncertainty in the
-measured values.
+[bumps](https://bumps.readthedocs.io/en/latest/). In addition to
+traditional optimizers which search for the best minimum they can find
+in the search space, bumps provides Bayesian uncertainty analysis which
+explores all viable minima and finds confidence intervals on the
+parameters based on uncertainty in the measured values.
 
 ### DFO-LS Minimizer
 
-[DFO-LS](https://github.com/numericalalgorithmsgroup/dfols) (Derivative-Free
-Optimizer for Least-Squares) is a Python library for solving nonlinear
-least-squares minimization, without requiring derivatives of the objective.
+[DFO-LS](https://github.com/numericalalgorithmsgroup/dfols)
+(Derivative-Free Optimizer for Least-Squares) is a Python library for
+solving nonlinear least-squares minimization, without requiring
+derivatives of the objective.
 
 ### Set Minimizer
 
@@ -148,9 +156,10 @@ project.analysis.current_minimizer = 'lmfit'
 
 ### Fit Mode
 
-In EasyDiffraction, you can set the **fit mode** to control how the refinement
-process is performed. The fit mode determines whether the refinement is
-performed independently for each experiment or jointly across all experiments.
+In EasyDiffraction, you can set the **fit mode** to control how the
+refinement process is performed. The fit mode determines whether the
+refinement is performed independently for each experiment or jointly
+across all experiments.
 
 The supported fit modes are:
 
@@ -173,14 +182,14 @@ print(project.analysis.fit_mode.mode.value)
 
 ### Perform Fit
 
-Refining the structure and experiment parameters against measured data is
-usually divided into several steps, where each step involves adding or removing
-parameters to be refined, calculating the model data, and comparing it to the
-experimental data as shown in the diagram above.
+Refining the structure and experiment parameters against measured data
+is usually divided into several steps, where each step involves adding
+or removing parameters to be refined, calculating the model data, and
+comparing it to the experimental data as shown in the diagram above.
 
-To select the parameters to be refined, you can set the attribute `free` of the
-parameters to `True`. This indicates that the parameter is free to be optimized
-during the refinement process.
+To select the parameters to be refined, you can set the attribute `free`
+of the parameters to `True`. This indicates that the parameter is free
+to be optimized during the refinement process.
 
 Here is an example of how to set parameters to be refined:
 
@@ -195,15 +204,16 @@ project.experiments['hrpt'].background['10'].y.free = True
 project.experiments['hrpt'].background['165'].y.free = True
 ```
 
-After setting the parameters to be refined, you can perform the fit using the
-`fit` method of the `analysis` object:
+After setting the parameters to be refined, you can perform the fit
+using the `fit` method of the `analysis` object:
 
 ```python
 project.analysis.fit()
 ```
 
-This method will iterate through the defined steps, adjusting the parameters
-until the calculated data sufficiently matches the experimental data.
+This method will iterate through the defined steps, adjusting the
+parameters until the calculated data sufficiently matches the
+experimental data.
 
 An example of the output after performing the fit is:
 
@@ -233,9 +243,9 @@ Fit results
 📈 Fitted parameters:
 ```
 
-Now, you can inspect the fitted parameters to see how they have changed during
-the refinement process, select more parameters to be refined, and perform
-additional fits as needed.
+Now, you can inspect the fitted parameters to see how they have changed
+during the refinement process, select more parameters to be refined, and
+perform additional fits as needed.
 
 To plot the measured vs calculated data after the fit, you can use the
 `plot_meas_vs_calc` method of the `analysis` object:
@@ -246,16 +256,16 @@ project.plot_meas_vs_calc(expt_name='hrpt', show_residual=True)
 
 ## Constraints
 
-In EasyDiffraction, you can define **constraints** on the model parameters to
-ensure that they remain within a specific range or follow a certain relationship
-during the refinement process.
+In EasyDiffraction, you can define **constraints** on the model
+parameters to ensure that they remain within a specific range or follow
+a certain relationship during the refinement process.
 
 ### Setting Aliases
 
-Before setting constraints, you need to set aliases for the parameters you want
-to constrain. This can be done using the `add` method of the `aliases` object.
-Aliases are used to reference parameters in a more readable way, making it
-easier to manage constraints.
+Before setting constraints, you need to set aliases for the parameters
+you want to constrain. This can be done using the `add` method of the
+`aliases` object. Aliases are used to reference parameters in a more
+readable way, making it easier to manage constraints.
 
 An example of setting aliases for parameters in a structure:
 
@@ -283,11 +293,11 @@ project.analysis.aliases.create(
 
 ### Setting Constraints
 
-Now that you have set the aliases, you can define constraints using the `add`
-method of the `constraints` object. Constraints are defined by specifying the
-**left-hand side (lhs) alias** and the **right-hand side (rhs) expression**. The
-rhs expression can be a simple alias or a more complex expression involving
-other aliases.
+Now that you have set the aliases, you can define constraints using the
+`add` method of the `constraints` object. Constraints are defined by
+specifying the **left-hand side (lhs) alias** and the **right-hand side
+(rhs) expression**. The rhs expression can be a simple alias or a more
+complex expression involving other aliases.
 
 An example of setting constraints for the aliases defined above:
 
@@ -303,15 +313,16 @@ project.analysis.constraints.create(
 )
 ```
 
-These constraints ensure that the `biso_Ba` parameter is equal to `biso_La`, and
-the `occ_Ba` parameter is equal to `1 - occ_La`. This means that the occupancy
-of the Ba atom will always be adjusted based on the occupancy of the La atom,
-and the isotropic displacement parameter for Ba will be equal to that of La
-during the refinement process.
+These constraints ensure that the `biso_Ba` parameter is equal to
+`biso_La`, and the `occ_Ba` parameter is equal to `1 - occ_La`. This
+means that the occupancy of the Ba atom will always be adjusted based on
+the occupancy of the La atom, and the isotropic displacement parameter
+for Ba will be equal to that of La during the refinement process.
 
 ### Viewing Constraints
 
-To view the defined constraints, you can use the `show_constraints` method:
+To view the defined constraints, you can use the `show_constraints`
+method:
 
 ```python
 project.analysis.show_constraints()
@@ -361,8 +372,9 @@ Example output:
 
 ## Saving an Analysis
 
-Saving the project, as described in the [Project](project.md) section, will also
-save the analysis settings to the `analysis.cif` inside the project directory.
+Saving the project, as described in the [Project](project.md) section,
+will also save the analysis settings to the `analysis.cif` inside the
+project directory.
 
 <br>
 
diff --git a/docs/user-guide/analysis-workflow/experiment.md b/docs/docs/user-guide/analysis-workflow/experiment.md
similarity index 84%
rename from docs/user-guide/analysis-workflow/experiment.md
rename to docs/docs/user-guide/analysis-workflow/experiment.md
index a62d9822..c121d6a9 100644
--- a/docs/user-guide/analysis-workflow/experiment.md
+++ b/docs/docs/user-guide/analysis-workflow/experiment.md
@@ -4,10 +4,10 @@ icon: material/microscope
 
 # :material-microscope: Experiment
 
-An **Experiment** in EasyDiffraction includes the measured diffraction data
-along with all relevant parameters that describe the experimental setup and
-associated conditions. This can include information about the instrumental
-resolution, peak shape, background, etc.
+An **Experiment** in EasyDiffraction includes the measured diffraction
+data along with all relevant parameters that describe the experimental
+setup and associated conditions. This can include information about the
+instrumental resolution, peak shape, background, etc.
 
 ## Defining an Experiment
 
@@ -15,23 +15,26 @@ EasyDiffraction allows you to:
 
 - **Load an existing experiment** from a file (**CIF** format). Both the
   metadata and measured data are expected to be in CIF format.
-- **Manually define** a new experiment by specifying its type, other necessary
-  experimental parameters, as well as load measured data. This is useful when
-  you want to create an experiment from scratch or when you have a measured data
-  file in a non-CIF format (e.g., `.xye`, `.xy`).
-
-Below, you will find instructions on how to define and manage experiments in
-EasyDiffraction. It is assumed that you have already created a `project` object,
-as described in the [Project](project.md) section as well as defined its
-`structures`, as described in the [Structure](model.md) section.
+- **Manually define** a new experiment by specifying its type, other
+  necessary experimental parameters, as well as load measured data. This
+  is useful when you want to create an experiment from scratch or when
+  you have a measured data file in a non-CIF format (e.g., `.xye`,
+  `.xy`).
+
+Below, you will find instructions on how to define and manage
+experiments in EasyDiffraction. It is assumed that you have already
+created a `project` object, as described in the [Project](project.md)
+section as well as defined its `structures`, as described in the
+[Structure](model.md) section.
 
 ### Adding from CIF
 
-This is the most straightforward way to define an experiment in EasyDiffraction.
-If you have a crystallographic information file (CIF) for your experiment, that
-contains both the necessary information (metadata) about the experiment as well
-as the measured data, you can add it to your `project.experiments` collection
-using the `add_from_cif_path` method. In this case, the name of the experiment
+This is the most straightforward way to define an experiment in
+EasyDiffraction. If you have a crystallographic information file (CIF)
+for your experiment, that contains both the necessary information
+(metadata) about the experiment as well as the measured data, you can
+add it to your `project.experiments` collection using the
+`add_from_cif_path` method. In this case, the name of the experiment
 will be taken from CIF.
 
 ```python
@@ -51,9 +54,9 @@ project.experiments.add_from_cif_str(cif_string)
 ```
 
 Accessing the experiment after adding it will also be done through the
-`experiments` object of the `project` instance. The name of the experiment will
-be the same as the data block id in the CIF file. For example, if the CIF file
-contains a data block with the id `hrpt`,
+`experiments` object of the `project` instance. The name of the
+experiment will be the same as the data block id in the CIF file. For
+example, if the CIF file contains a data block with the id `hrpt`,
 
 <!-- prettier-ignore-start -->
 
@@ -77,20 +80,22 @@ project.experiments['hrpt']
 
 ### Defining Manually
 
-If you do not have a CIF file or prefer to define the experiment manually, you
-can use the `add_from_data_path` method of the `experiments` object of the
-`project` instance. In this case, you will need to specify the **name** of the
-experiment, which will be used to reference it later, as well as **data_path**
-to the measured data file (e.g., `.xye`, `.xy`). Supported formats are described
-in the [Measured Data Category](#5-measured-data-category) section.
+If you do not have a CIF file or prefer to define the experiment
+manually, you can use the `add_from_data_path` method of the
+`experiments` object of the `project` instance. In this case, you will
+need to specify the **name** of the experiment, which will be used to
+reference it later, as well as **data_path** to the measured data file
+(e.g., `.xye`, `.xy`). Supported formats are described in the
+[Measured Data Category](#measured-data-category) section.
 
-Optionally, you can also specify the additional parameters that define the
-**type of experiment** you want to create. If you do not specify any of these
-parameters, the default values will be used, which are the first in the list of
-supported options for each parameter:
+Optionally, you can also specify the additional parameters that define
+the **type of experiment** you want to create. If you do not specify any
+of these parameters, the default values will be used, which are the
+first in the list of supported options for each parameter:
 
 - **sample_form**: The form of the sample (powder, single crystal).
-- **beam_mode**: The mode of the beam (constant wavelength, time-of-flight).
+- **beam_mode**: The mode of the beam (constant wavelength,
+  time-of-flight).
 - **radiation_probe**: The type of radiation used (neutron, X-ray).
 - **scattering_type**: The type of scattering (bragg, total).
 
@@ -100,8 +105,8 @@ supported options for each parameter:
     these parameters. If you need to change them, you must create a new experiment
     or redefine the existing one.
 
-Here is an example of how to add an experiment with all relevant components
-explicitly defined:
+Here is an example of how to add an experiment with all relevant
+components explicitly defined:
 
 ```python
 # Add an experiment with default parameters, based on the specified type.
@@ -125,9 +130,9 @@ project.experiments.add_from_data_path(
 )
 ```
 
-If you do not have measured data for fitting and only want to view the simulated
-pattern, you can define an experiment without measured data using the `create`
-method:
+If you do not have measured data for fitting and only want to view the
+simulated pattern, you can define an experiment without measured data
+using the `create` method:
 
 ```python
 # Add an experiment without measured data
@@ -159,23 +164,24 @@ project.experiments.add(experiment)
 
 ## Modifying Parameters
 
-When an experiment is added, it is created with a set of default parameters that
-you can modify to match your specific experimental setup. All parameters are
-grouped into categories based on their function, making it easier to manage and
-understand the different aspects of the experiment:
-
-1. **Instrument Category**: Defines the instrument configuration, including
-   wavelength, two-theta offset, and resolution parameters.
-2. **Peak Category**: Specifies the peak profile type and its parameters, such
-   as broadening and asymmetry.
-3. **Background Category**: Defines the background type and allows you to add
-   background points.
-4. **Linked Phases Category**: Links the structure defined in the previous step
-   to the experiment, allowing you to specify the scale factor for the linked
-   phase.
-5. **Measured Data Category**: Contains the measured data. The expected format
-   depends on the experiment type, but generally includes columns for 2θ angle
-   or TOF and intensity.
+When an experiment is added, it is created with a set of default
+parameters that you can modify to match your specific experimental
+setup. All parameters are grouped into categories based on their
+function, making it easier to manage and understand the different
+aspects of the experiment:
+
+1. **Instrument Category**: Defines the instrument configuration,
+   including wavelength, two-theta offset, and resolution parameters.
+2. **Peak Category**: Specifies the peak profile type and its
+   parameters, such as broadening and asymmetry.
+3. **Background Category**: Defines the background type and allows you
+   to add background points.
+4. **Linked Phases Category**: Links the structure defined in the
+   previous step to the experiment, allowing you to specify the scale
+   factor for the linked phase.
+5. **Measured Data Category**: Contains the measured data. The expected
+   format depends on the experiment type, but generally includes columns
+   for 2θ angle or TOF and intensity.
 
 ### 1. Instrument Category { #instrument-category }
 
@@ -230,10 +236,10 @@ project.experiments['hrpt'].linked_phases.create(id='lbco', scale=10.0)
 
 ### 6. Measured Data Category { #measured-data-category }
 
-If you do not have a CIF file for your experiment, you can load measured data
-from a file in a supported format. The measured data will be automatically
-converted into CIF format and added to the experiment. The expected format
-depends on the experiment type.
+If you do not have a CIF file for your experiment, you can load measured
+data from a file in a supported format. The measured data will be
+automatically converted into CIF format and added to the experiment. The
+expected format depends on the experiment type.
 
 #### Supported data file formats:
 
@@ -245,8 +251,8 @@ depends on the experiment type.
   - [\_pd_meas.2theta_scan](../parameters/pd_meas.md)
   - [\_pd_meas.intensity_total](../parameters/pd_meas.md)
 
-If no **standard deviations** are provided, they are automatically calculated as
-the **square root** of measured intensities.
+If no **standard deviations** are provided, they are automatically
+calculated as the **square root** of measured intensities.
 
 Optional comments with `#` are possible in data file headers.
 
@@ -602,5 +608,5 @@ loop_
 
 ---
 
-Now that the experiment has been defined, you can proceed to the next step:
-[Analysis](analysis.md).
+Now that the experiment has been defined, you can proceed to the next
+step: [Analysis](analysis.md).
diff --git a/docs/docs/user-guide/analysis-workflow/index.md b/docs/docs/user-guide/analysis-workflow/index.md
new file mode 100644
index 00000000..84598210
--- /dev/null
+++ b/docs/docs/user-guide/analysis-workflow/index.md
@@ -0,0 +1,37 @@
+# Analysis Workflow
+
+To streamline the **data analysis process**, EasyDiffraction follows a
+structured workflow divided into **five key steps**:
+
+```mermaid
+flowchart LR
+    a(Project)
+    b(Model)
+    c(Experiment)
+    d(Analysis)
+    e(Summary)
+    a --> b
+    b --> c
+    c --> d
+    d --> e
+```
+
+- [:material-archive: Project](project.md) – Establish a **project** as
+  a container for structure and experiment parameters, measured and
+  calculated data, analysis settings and results.
+- [:material-puzzle: Structure](model.md) – Load an existing
+  **crystallographic model** in CIF format or define a new one from
+  scratch.
+- [:material-microscope: Experiment](experiment.md) – Import
+  **experimental diffraction data** and configure **instrumental** and
+  other relevant parameters.
+- [:material-calculator: Analysis](analysis.md) – **Calculate the
+  diffraction pattern** and **optimize the structural model** by
+  refining its parameters to match experimental measurements.
+- [:material-clipboard-text: Summary](summary.md) – Generate a
+  **report** summarizing the results of the analysis, including refined
+  parameters.
+
+Each step is described in detail in its respective section, guiding
+users through the **entire diffraction data analysis workflow** in
+EasyDiffraction.
diff --git a/docs/user-guide/analysis-workflow/model.md b/docs/docs/user-guide/analysis-workflow/model.md
similarity index 77%
rename from docs/user-guide/analysis-workflow/model.md
rename to docs/docs/user-guide/analysis-workflow/model.md
index c437ea62..95e309cd 100644
--- a/docs/user-guide/analysis-workflow/model.md
+++ b/docs/docs/user-guide/analysis-workflow/model.md
@@ -5,35 +5,38 @@ icon: material/puzzle
 # :material-puzzle: Structure
 
 The **Structure** in EasyDiffraction represents the **crystallographic
-structure** used to calculate the diffraction pattern, which is then fitted to
-the **experimentally measured data** to refine the structural parameters.
+structure** used to calculate the diffraction pattern, which is then
+fitted to the **experimentally measured data** to refine the structural
+parameters.
 
 EasyDiffraction allows you to:
 
 - **Load an existing model** from a file (**CIF** format).
-- **Manually define** a new structure by specifying crystallographic parameters.
+- **Manually define** a new structure by specifying crystallographic
+  parameters.
 
-Below, you will find instructions on how to define and manage crystallographic
-models in EasyDiffraction. It is assumed that you have already created a
-`project` object, as described in the [Project](project.md) section.
+Below, you will find instructions on how to define and manage
+crystallographic models in EasyDiffraction. It is assumed that you have
+already created a `project` object, as described in the
+[Project](project.md) section.
 
 ## Adding a Model from CIF
 
-This is the most straightforward way to define a structure in EasyDiffraction.
-If you have a crystallographic information file (CIF) for your structure, you
-can add it to your project using the `add_from_cif_path` method of the
-`project.structures` collection. In this case, the name of the model will be
-taken from CIF.
+This is the most straightforward way to define a structure in
+EasyDiffraction. If you have a crystallographic information file (CIF)
+for your structure, you can add it to your project using the
+`add_from_cif_path` method of the `project.structures` collection. In
+this case, the name of the model will be taken from CIF.
 
 ```python
 # Load a phase from a CIF file
 project.structures.add_from_cif_path('data/lbco.cif')
 ```
 
-Accessing the model after loading it will be done through the `structures`
-collection of the `project` instance. The name of the model will be the same as
-the data block id in the CIF file. For example, if the CIF file contains a data
-block with the id `lbco`,
+Accessing the model after loading it will be done through the
+`structures` collection of the `project` instance. The name of the model
+will be the same as the data block id in the CIF file. For example, if
+the CIF file contains a data block with the id `lbco`,
 
 <!-- prettier-ignore-start -->
 
@@ -57,10 +60,10 @@ project.structures['lbco']
 
 ## Defining a Model Manually
 
-If you do not have a CIF file or prefer to define the model manually, you can
-use the `create` method of the `structures` object of the `project` instance. In
-this case, you will need to specify the name of the model, which will be used to
-reference it later.
+If you do not have a CIF file or prefer to define the model manually,
+you can use the `create` method of the `structures` object of the
+`project` instance. In this case, you will need to specify the name of
+the model, which will be used to reference it later.
 
 ```python
 # Add a structure with default parameters
@@ -68,15 +71,17 @@ reference it later.
 project.structures.create(name='nacl')
 ```
 
-The `add` method creates a new structure with default parameters. You can then
-modify its parameters to match your specific crystallographic structure. All
-parameters are grouped into the following categories, which makes it easier to
-manage the model:
+The `add` method creates a new structure with default parameters. You
+can then modify its parameters to match your specific crystallographic
+structure. All parameters are grouped into the following categories,
+which makes it easier to manage the model:
 
-1. **Space Group Category**: Defines the symmetry of the crystal structure.
-2. **Cell Category**: Specifies the dimensions and angles of the unit cell.
-3. **Atom Sites Category**: Describes the positions and properties of atoms
-   within the unit cell.
+1. **Space Group Category**: Defines the symmetry of the crystal
+   structure.
+2. **Cell Category**: Specifies the dimensions and angles of the unit
+   cell.
+3. **Atom Sites Category**: Describes the positions and properties of
+   atoms within the unit cell.
 
 ### 1. Space Group Category { #space-group-category }
 
@@ -177,10 +182,10 @@ Structure 🧩 'lbco' as cif
 
 ## Saving a Model
 
-Saving the project, as described in the [Project](project.md) section, will also
-save the model. Each model is saved as a separate CIF file in the `structures`
-subdirectory of the project directory. The project file contains references to
-these files.
+Saving the project, as described in the [Project](project.md) section,
+will also save the model. Each model is saved as a separate CIF file in
+the `structures` subdirectory of the project directory. The project file
+contains references to these files.
 
 Below is an example of the saved CIF file for the `lbco` model:
 
@@ -223,5 +228,5 @@ O  O    0   0.5 0.5   c   1    Biso 1.4041
 
 ---
 
-Now that the crystallographic model has been defined and added to the project,
-you can proceed to the next step: [Experiment](experiment.md).
+Now that the crystallographic model has been defined and added to the
+project, you can proceed to the next step: [Experiment](experiment.md).
diff --git a/docs/user-guide/analysis-workflow/project.md b/docs/docs/user-guide/analysis-workflow/project.md
similarity index 85%
rename from docs/user-guide/analysis-workflow/project.md
rename to docs/docs/user-guide/analysis-workflow/project.md
index 45e1d9c5..ad41f852 100644
--- a/docs/user-guide/analysis-workflow/project.md
+++ b/docs/docs/user-guide/analysis-workflow/project.md
@@ -4,25 +4,26 @@ icon: material/archive
 
 # :material-archive: Project
 
-The **Project** serves as a container for all data and metadata associated with
-a particular data analysis task. It acts as the top-level entity in
-EasyDiffraction, ensuring structured organization and easy access to relevant
-information. Each project can contain multiple **experimental datasets**, with
-each dataset containing contribution from multiple **structures**.
+The **Project** serves as a container for all data and metadata
+associated with a particular data analysis task. It acts as the
+top-level entity in EasyDiffraction, ensuring structured organization
+and easy access to relevant information. Each project can contain
+multiple **experimental datasets**, with each dataset containing
+contribution from multiple **structures**.
 
 EasyDiffraction allows you to:
 
 - **Manually create** a new project by specifying its metadata.
 - **Load an existing project** from a file (**CIF** format).
 
-Below are instructions on how to set up a project in EasyDiffraction. It is
-assumed that you have already imported the `easydiffraction` package, as
-described in the [First Steps](../first-steps.md) section.
+Below are instructions on how to set up a project in EasyDiffraction. It
+is assumed that you have already imported the `easydiffraction` package,
+as described in the [First Steps](../first-steps.md) section.
 
 ## Creating a Project Manually
 
-You can manually create a new project and specify its short **name**, **title**
-and **description**. All these parameters are optional.
+You can manually create a new project and specify its short **name**,
+**title** and **description**. All these parameters are optional.
 
 ```py
 # Create a new project
@@ -44,10 +45,11 @@ Saving the initial project requires specifying the directory path:
 project.save_as(dir_path='lbco_hrpt')
 ```
 
-If working in the interactive mode in a Jupyter notebook or similar environment,
-you can also save the project after every significant change. This is useful for
-keeping track of changes and ensuring that your work is not lost. If you already
-saved the project with `save_as`, you can just call the `save`:
+If working in the interactive mode in a Jupyter notebook or similar
+environment, you can also save the project after every significant
+change. This is useful for keeping track of changes and ensuring that
+your work is not lost. If you already saved the project with `save_as`,
+you can just call the `save`:
 
 ```python
 project.save()
@@ -55,8 +57,9 @@ project.save()
 
 ## Loading a Project from CIF
 
-If you have an existing project, you can load it directly from a CIF file. This
-is useful for reusing previously defined projects or sharing them with others.
+If you have an existing project, you can load it directly from a CIF
+file. This is useful for reusing previously defined projects or sharing
+them with others.
 
 ```python
 project.load('data/lbco_hrpt.cif')
@@ -89,8 +92,8 @@ The example below illustrates a typical **project structure** for a
 
 ## Project Files
 
-Below is a complete project example stored in the `La0.5Ba0.5CoO3` directory,
-showing the contents of all files in the project.
+Below is a complete project example stored in the `La0.5Ba0.5CoO3`
+directory, showing the contents of all files in the project.
 
 !!! warning "Important"
 
@@ -101,8 +104,8 @@ showing the contents of all files in the project.
 
 ### 1. <span class="orange">project.cif</span>
 
-This file provides an overview of the project, including file names of the
-**structures** and **experiments** associated with the project.
+This file provides an overview of the project, including file names of
+the **structures** and **experiments** associated with the project.
 
 <!-- prettier-ignore-start -->
 
@@ -127,9 +130,9 @@ hrpt.cif
 
 ### 2. structures / <span class="orange">lbco.cif</span>
 
-This file contains crystallographic information associated with the structure
-model, including **space group**, **unit cell parameters**, and **atomic
-positions**.
+This file contains crystallographic information associated with the
+structure model, including **space group**, **unit cell parameters**,
+and **atomic positions**.
 
 <!-- prettier-ignore-start -->
 
@@ -168,9 +171,9 @@ O  O    0   0.5 0.5   c   1    Biso 1.4041
 
 ### 3. experiments / <span class="orange">hrpt.cif</span>
 
-This file contains the **experiment type**, **instrumental parameters**, **peak
-parameters**, **associated phases**, **background parameters** and **measured
-diffraction data**.
+This file contains the **experiment type**, **instrumental parameters**,
+**peak parameters**, **associated phases**, **background parameters**
+and **measured diffraction data**.
 
 <!-- prettier-ignore-start -->
 
@@ -236,8 +239,8 @@ loop_
 
 ### 4. <span class="orange">analysis.cif</span>
 
-This file contains settings used for data analysis, including the choice of
-**calculation** and **fitting** engines, as well as user defined
+This file contains settings used for data analysis, including the choice
+of **calculation** and **fitting** engines, as well as user defined
 **constraints**.
 
 <!-- prettier-ignore-start -->
diff --git a/docs/user-guide/analysis-workflow/summary.md b/docs/docs/user-guide/analysis-workflow/summary.md
similarity index 72%
rename from docs/user-guide/analysis-workflow/summary.md
rename to docs/docs/user-guide/analysis-workflow/summary.md
index 4790f857..34a89b61 100644
--- a/docs/user-guide/analysis-workflow/summary.md
+++ b/docs/docs/user-guide/analysis-workflow/summary.md
@@ -5,20 +5,20 @@ icon: material/clipboard-text
 # :material-clipboard-text: Summary
 
 The **Summary** section represents the final step in the data processing
-workflow. It involves generating a **summary report** that consolidates the
-results of the diffraction data analysis, providing a comprehensive overview of
-the model refinement process and its outcomes.
+workflow. It involves generating a **summary report** that consolidates
+the results of the diffraction data analysis, providing a comprehensive
+overview of the model refinement process and its outcomes.
 
 ## Contents of the Summary Report
 
 The summary report includes key details such as:
 
-- Final refined model parameters – Optimized crystallographic and instrumental
-  parameters.
-- Goodness-of-fit indicators – Metrics such as R-factors, chi-square (χ²), and
-  residuals.
-- Graphical representation – Visualization of experimental vs. calculated
-  diffraction patterns.
+- Final refined model parameters – Optimized crystallographic and
+  instrumental parameters.
+- Goodness-of-fit indicators – Metrics such as R-factors, chi-square
+  (χ²), and residuals.
+- Graphical representation – Visualization of experimental vs.
+  calculated diffraction patterns.
 
 ## Viewing the Summary Report
 
@@ -36,8 +36,9 @@ including model parameters, fit statistics, and data visualizations.
 
 ## Saving a Summary
 
-Saving the project, as described in the [Project](project.md) section, will also
-save the summary report to the `summary.cif` inside the project directory.
+Saving the project, as described in the [Project](project.md) section,
+will also save the summary report to the `summary.cif` inside the
+project directory.
 
 <!--
 ## Exporting the Summary Report
@@ -53,6 +54,7 @@ further analysis and documentation:
 ---
 
 Now that the initial user guide is complete, you can explore the
-[EasyDiffraction API](../../api-reference/index.md) for detailed information on
-the available classes and methods. Additionally, you can find practical examples
-and step-by-step guides in the [Tutorials](../../tutorials/index.md).
+[EasyDiffraction API](../../api-reference/index.md) for detailed
+information on the available classes and methods. Additionally, you can
+find practical examples and step-by-step guides in the
+[Tutorials](../../tutorials/index.md).
diff --git a/docs/user-guide/concept.md b/docs/docs/user-guide/concept.md
similarity index 60%
rename from docs/user-guide/concept.md
rename to docs/docs/user-guide/concept.md
index fb3f4687..29768eba 100644
--- a/docs/user-guide/concept.md
+++ b/docs/docs/user-guide/concept.md
@@ -1,7 +1,7 @@
 # Concept
 
-Typical data processing in a diffraction experiment consists of three main
-steps:  
+Typical data processing in a diffraction experiment consists of three
+main steps:  
 **data acquisition**, **data reduction**, and **data analysis**.
 
 ```mermaid
@@ -15,13 +15,14 @@ flowchart LR
 
 ## Data Acquisition
 
-Data acquisition involves collecting raw data from the diffractometer (also
-referred to as the instrument) during a neutron or X-ray diffraction experiment.
+Data acquisition involves collecting raw data from the diffractometer
+(also referred to as the instrument) during a neutron or X-ray
+diffraction experiment.
 
-The data is recorded by a detector that measures the intensity of the diffracted
-radiation as a function of angle or time. The radiation is scattered by the
-crystalline specimen (also called the sample), whose structural properties are
-being studied.
+The data is recorded by a detector that measures the intensity of the
+diffracted radiation as a function of angle or time. The radiation is
+scattered by the crystalline specimen (also called the sample), whose
+structural properties are being studied.
 
 <!-- prettier-ignore-start -->
 ![](../assets/images/user-guide/data-acquisition_instrument.png){ width="450", loading=lazy }
@@ -42,10 +43,10 @@ Credits: DOI 10.1126/science.1238932
 
 ## Data Reduction
 
-Data reduction involves processing the raw data to remove background noise,
-correct for instrumental effects, and convert the data into a more usable
-format. The goal is to produce a clean and reliable dataset suitable for
-analysis.
+Data reduction involves processing the raw data to remove background
+noise, correct for instrumental effects, and convert the data into a
+more usable format. The goal is to produce a clean and reliable dataset
+suitable for analysis.
 
 <!-- prettier-ignore-start -->
 ![](../assets/images/user-guide/data-reduction_1d-pattern.png){ width="450", loading=lazy }
@@ -57,28 +58,32 @@ Credits: DOI 10.1126/science.1238932
 
 ## Data Analysis
 
-Data analysis uses the reduced data to extract meaningful information about the
-crystallographic structure. This may include determining the crystal or magnetic
-structure, identifying phases, performing quantitative analysis, etc.
-
-Analysis often involves comparing experimental data with data calculated from a
-crystallographic model to validate and interpret the results. For powder
-diffraction, techniques such as Rietveld or Le Bail refinement may be used.
-
-In EasyDiffraction, we focus on this **model-dependent analysis**. A model is
-built using prior knowledge of the system, and its parameters are optimized to
-achieve the best agreement between experimental and calculated diffraction data.
-
-By "model", we usually refer to a **crystallographic model** of the sample. This
-includes unit cell parameters, space group, atomic positions, thermal
-parameters, and more. However, the term "model" also encompasses experimental
-aspects such as instrumental resolution, background, peak shape, etc. Therefore,
-EasyDiffraction separates the model into two parts: the **structure** and the
-**experiment**.
-
-The aim of data analysis is to refine the structural parameters of the sample by
-minimizing the difference (or **residual**) between the experimental and
-calculated data — and this is exactly where EasyDiffraction comes into play.
+Data analysis uses the reduced data to extract meaningful information
+about the crystallographic structure. This may include determining the
+crystal or magnetic structure, identifying phases, performing
+quantitative analysis, etc.
+
+Analysis often involves comparing experimental data with data calculated
+from a crystallographic model to validate and interpret the results. For
+powder diffraction, techniques such as Rietveld or Le Bail refinement
+may be used.
+
+In EasyDiffraction, we focus on this **model-dependent analysis**. A
+model is built using prior knowledge of the system, and its parameters
+are optimized to achieve the best agreement between experimental and
+calculated diffraction data.
+
+By "model", we usually refer to a **crystallographic model** of the
+sample. This includes unit cell parameters, space group, atomic
+positions, thermal parameters, and more. However, the term "model" also
+encompasses experimental aspects such as instrumental resolution,
+background, peak shape, etc. Therefore, EasyDiffraction separates the
+model into two parts: the **structure** and the **experiment**.
+
+The aim of data analysis is to refine the structural parameters of the
+sample by minimizing the difference (or **residual**) between the
+experimental and calculated data — and this is exactly where
+EasyDiffraction comes into play.
 
 <!-- prettier-ignore-start -->
 ![](../assets/images/user-guide/data-analysis_refinement.png){ width="450", loading=lazy }
diff --git a/docs/user-guide/data-format.md b/docs/docs/user-guide/data-format.md
similarity index 76%
rename from docs/user-guide/data-format.md
rename to docs/docs/user-guide/data-format.md
index 63e2e52e..da7c92b1 100644
--- a/docs/user-guide/data-format.md
+++ b/docs/docs/user-guide/data-format.md
@@ -1,46 +1,48 @@
 # Data Format
 
-Before starting the data analysis workflow, it is important to define the **data
-formats** used in EasyDiffraction.
+Before starting the data analysis workflow, it is important to define
+the **data formats** used in EasyDiffraction.
 
 ## Crystallographic Information File
 
-Each software package typically uses its own **data format** and **parameter
-names** for storing and sharing data. In EasyDiffraction, we use the
-**Crystallographic Information File (CIF)** format, which is widely used in
-crystallography and materials science. It provides both a human-readable syntax
-and a set of dictionaries that define the meaning of each parameter.
+Each software package typically uses its own **data format** and
+**parameter names** for storing and sharing data. In EasyDiffraction, we
+use the **Crystallographic Information File (CIF)** format, which is
+widely used in crystallography and materials science. It provides both a
+human-readable syntax and a set of dictionaries that define the meaning
+of each parameter.
 
 These dictionaries are maintained by the
 [International Union of Crystallography (IUCr)](https://www.iucr.org).  
 The base dictionary, **coreCIF**, contains the most common parameters in
-crystallography. The **pdCIF** dictionary covers parameters specific to powder
-diffraction, **magCIF** is used for magnetic structure analysis.
+crystallography. The **pdCIF** dictionary covers parameters specific to
+powder diffraction, **magCIF** is used for magnetic structure analysis.
 
-As most parameters needed for diffraction data analysis are already covered by
-IUCr dictionaries, EasyDiffraction uses the strict **CIF format** and follows
-these dictionaries as closely as possible — for both input and output —
-throughout the workflow described in the
+As most parameters needed for diffraction data analysis are already
+covered by IUCr dictionaries, EasyDiffraction uses the strict **CIF
+format** and follows these dictionaries as closely as possible — for
+both input and output — throughout the workflow described in the
 [Analysis Workflow](analysis-workflow/index.md) section.
 
 The key advantage of CIF is the standardized naming of parameters and
-categories, which promotes interoperability and familiarity among researchers.
+categories, which promotes interoperability and familiarity among
+researchers.
 
 If a required parameter is not defined in the standard dictionaries,
 EasyDiffraction introduces **custom CIF keywords**, documented in the
-[Parameters](parameters.md) section under the **CIF name for serialization**
-columns.
+[Parameters](parameters.md) section under the **CIF name for
+serialization** columns.
 
 ## Format Comparison
 
-Below, we compare **CIF** with another common data format in programming:
-**JSON**.
+Below, we compare **CIF** with another common data format in
+programming: **JSON**.
 
 ### Scientific Journals
 
 Let's assume the following structural data for La₀.₅Ba₀.₅CoO₃ (LBCO), as
-reported in a scientific publication. These parameters are to be refined during
-diffraction data analysis:
+reported in a scientific publication. These parameters are to be refined
+during diffraction data analysis:
 
 Table 1. Crystallographic data. Space group: _Pm3̅m_.
 
@@ -53,8 +55,8 @@ Table 1. Crystallographic data. Space group: _Pm3̅m_.
 | beta      | 90.0   |
 | gamma     | 90.0   |
 
-Table 2. Atomic coordinates (_x_, _y_, _z_), occupancies (occ) and isotropic
-displacement parameters (_Biso_)
+Table 2. Atomic coordinates (_x_, _y_, _z_), occupancies (occ) and
+isotropic displacement parameters (_Biso_)
 
 | Label | Type | x   | y   | z   | occ | Biso   |
 | ----- | ---- | --- | --- | --- | --- | ------ |
@@ -102,17 +104,17 @@ O  O    0   0.5 0.5   c   1    Biso 1.4041
 
 <!-- prettier-ignore-end -->
 
-Here, unit cell parameters are grouped under the `_cell` category, and atomic
-positions under the `_atom_site` category. The `loop_` keyword indicates that
-multiple rows follow for the listed parameters. Each atom is identified using
-`_atom_site.label`.
+Here, unit cell parameters are grouped under the `_cell` category, and
+atomic positions under the `_atom_site` category. The `loop_` keyword
+indicates that multiple rows follow for the listed parameters. Each atom
+is identified using `_atom_site.label`.
 
 ### JSON
 
-Representing the same data in **JSON** results in a format that is more verbose
-and less human-readable, especially for large datasets. JSON is ideal for
-structured data in programming environments, whereas CIF is better suited for
-human-readable crystallographic data.
+Representing the same data in **JSON** results in a format that is more
+verbose and less human-readable, especially for large datasets. JSON is
+ideal for structured data in programming environments, whereas CIF is
+better suited for human-readable crystallographic data.
 
 ```json
 {
@@ -173,11 +175,11 @@ human-readable crystallographic data.
 
 ## Experiment Definition
 
-The previous example described the **structure** (crystallographic model), but
-how is the **experiment** itself represented?
+The previous example described the **structure** (crystallographic
+model), but how is the **experiment** itself represented?
 
-The experiment is also saved as a CIF file. For example, background intensity in
-a powder diffraction experiment might be represented as:
+The experiment is also saved as a CIF file. For example, background
+intensity in a powder diffraction experiment might be represented as:
 
 <!-- prettier-ignore-start -->
 
@@ -197,13 +199,13 @@ loop_
 
 <!-- prettier-ignore-end -->
 
-More details on how to define the experiment in CIF format are provided in the
-[Experiment](analysis-workflow/experiment.md) section.
+More details on how to define the experiment in CIF format are provided
+in the [Experiment](analysis-workflow/experiment.md) section.
 
 ## Other Input/Output Blocks
 
-EasyDiffraction uses CIF consistently throughout its workflow, including in the
-following blocks:
+EasyDiffraction uses CIF consistently throughout its workflow, including
+in the following blocks:
 
 - **project**: contains the project information
 - **structure**: defines the structure
@@ -217,11 +219,13 @@ Example CIF files for each block are provided in the
 
 ## Other Data Formats
 
-While CIF is the primary format in EasyDiffraction, we also support other
-formats for importing measured data. These include plain text files with
-multiple columns. The meaning of the columns depends on the experiment type.
+While CIF is the primary format in EasyDiffraction, we also support
+other formats for importing measured data. These include plain text
+files with multiple columns. The meaning of the columns depends on the
+experiment type.
 
-For example, in a standard constant-wavelength powder diffraction experiment:
+For example, in a standard constant-wavelength powder diffraction
+experiment:
 
 - Column 1: 2θ angle
 - Column 2: intensity
diff --git a/docs/user-guide/first-steps.md b/docs/docs/user-guide/first-steps.md
similarity index 56%
rename from docs/user-guide/first-steps.md
rename to docs/docs/user-guide/first-steps.md
index acb50bec..b4366684 100644
--- a/docs/user-guide/first-steps.md
+++ b/docs/docs/user-guide/first-steps.md
@@ -1,44 +1,44 @@
 # First Steps
 
-This section introduces the basic usage of the EasyDiffraction Python API.
-You'll learn how to import the package, use core classes and utility functions,
-and access built-in helper methods to streamline diffraction data analysis
-workflows.
+This section introduces the basic usage of the EasyDiffraction Python
+API. You'll learn how to import the package, use core classes and
+utility functions, and access built-in helper methods to streamline
+diffraction data analysis workflows.
 
 ## Importing EasyDiffraction
 
 ### Importing the entire package
 
-To start using EasyDiffraction, first import the package in your Python script
-or Jupyter Notebook. This can be done with the following command:
+To start using EasyDiffraction, first import the package in your Python
+script or Jupyter Notebook. This can be done with the following command:
 
 ```python
 import easydiffraction
 ```
 
-Alternatively, you can import it with an alias to avoid naming conflicts and for
-convenience:
+Alternatively, you can import it with an alias to avoid naming conflicts
+and for convenience:
 
 ```python
 import easydiffraction as ed
 ```
 
-The latter syntax allows you to access all the modules and classes within the
-package using the `ed` prefix. For example, you can create a project instance
-like this:
+The latter syntax allows you to access all the modules and classes
+within the package using the `ed` prefix. For example, you can create a
+project instance like this:
 
 ```python
 project = ed.Project()
 ```
 
 A complete tutorial using the `import` syntax can be found
-[here](../../tutorials/ed-3/).
+[here](../tutorials/ed-3.ipynb).
 
 ### Importing specific parts
 
-Alternatively, you can import specific classes or methods from the package. For
-example, you can import the `Project`, `Structure`, `Experiment` classes and
-`download_from_repository` method like this:
+Alternatively, you can import specific classes or methods from the
+package. For example, you can import the `Project`, `Structure`,
+`Experiment` classes and `download_from_repository` method like this:
 
 ```python
 from easydiffraction import Project
@@ -47,24 +47,25 @@ from easydiffraction import Experiment
 from easydiffraction import download_from_repository
 ```
 
-This enables you to use these classes and methods directly without the package
-prefix. This is especially useful when you're using only a few components and
-want to keep your code clean and concise. In this case, you can create a project
-instance like this:
+This enables you to use these classes and methods directly without the
+package prefix. This is especially useful when you're using only a few
+components and want to keep your code clean and concise. In this case,
+you can create a project instance like this:
 
 ```python
 project = Project()
 ```
 
 A complete tutorial using the `from` syntax can be found
-[here](../../tutorials/ed-4/).
+[here](../tutorials/ed-4.ipynb).
 
 ## Utility functions
 
-EasyDiffraction also provides several utility functions that can simplify your
-workflow. One of them is the `download_from_repository` function, which allows
-you to download data files from our remote repository, making it easy to access
-and use them while experimenting with EasyDiffraction.
+EasyDiffraction also provides several utility functions that can
+simplify your workflow. One of them is the `download_from_repository`
+function, which allows you to download data files from our remote
+repository, making it easy to access and use them while experimenting
+with EasyDiffraction.
 
 For example, you can download a data file like this:
 
@@ -78,29 +79,31 @@ ed.download_from_repository(
 )
 ```
 
-This command will download the `hrpt_lbco.xye` file from the `docs` branch of
-the EasyDiffraction repository and save it in the `data` directory of your
-current working directory. This is particularly useful for quickly accessing
-example datasets without having to manually download them.
+This command will download the `hrpt_lbco.xye` file from the `docs`
+branch of the EasyDiffraction repository and save it in the `data`
+directory of your current working directory. This is particularly useful
+for quickly accessing example datasets without having to manually
+download them.
 
 ## Help methods
 
-EasyDiffraction provides several helper methods to display supported engines for
-calculation, minimization, and plotting. These methods can be called on the
-`Project` instance to display the available options for different categories.
+EasyDiffraction provides several helper methods to display supported
+engines for calculation, minimization, and plotting. These methods can
+be called on the `Project` instance to display the available options for
+different categories.
 
 ### Supported calculators
 
-The calculator is automatically selected based on the experiment type. You can
-use the `show_supported_calculator_types()` method on an experiment to see which
-calculation engines are compatible:
+The calculator is automatically selected based on the experiment type.
+You can use the `show_supported_calculator_types()` method on an
+experiment to see which calculation engines are compatible:
 
 ```python
 project.experiments['hrpt'].show_supported_calculator_types()
 ```
 
-This will display a list of supported calculators along with their descriptions,
-allowing you to choose the one that best fits your needs.
+This will display a list of supported calculators along with their
+descriptions, allowing you to choose the one that best fits your needs.
 
 An example of the output for a Bragg diffraction experiment:
 
@@ -119,24 +122,25 @@ project.show_available_minimizers()
 
 ### Available parameters
 
-EasyDiffraction provides several methods for showing the available parameters
-grouped in different categories. For example, you can use:
+EasyDiffraction provides several methods for showing the available
+parameters grouped in different categories. For example, you can use:
 
-- `project.analysis.show_all_params()` – to display all available parameters for
-  the analysis step.
-- `project.analysis.show_fittable_params()` – to display only the parameters
-  that can be fitted during the analysis.
-- `project.analysis.show_free_params()` – to display the parameters that are
-  currently free to be adjusted during the fitting process.
+- `project.analysis.show_all_params()` – to display all available
+  parameters for the analysis step.
+- `project.analysis.show_fittable_params()` – to display only the
+  parameters that can be fitted during the analysis.
+- `project.analysis.show_free_params()` – to display the parameters that
+  are currently free to be adjusted during the fitting process.
 
-Finally, you can use the `project.analysis.how_to_access_parameters()` method to
-get a brief overview of how to access and modify parameters in the analysis
-step, along with their unique identifiers in the CIF format. This can be
-particularly useful for users who are new to the EasyDiffraction API or those
-who want to quickly understand how to work with parameters in their projects.
+Finally, you can use the `project.analysis.how_to_access_parameters()`
+method to get a brief overview of how to access and modify parameters in
+the analysis step, along with their unique identifiers in the CIF
+format. This can be particularly useful for users who are new to the
+EasyDiffraction API or those who want to quickly understand how to work
+with parameters in their projects.
 
-An example of the output for the `project.analysis.how_to_access_parameters()`
-method is:
+An example of the output for the
+`project.analysis.how_to_access_parameters()` method is:
 
 |     | Code variable                                       | Unique ID for CIF                |
 | --- | --------------------------------------------------- | -------------------------------- |
@@ -151,8 +155,9 @@ method is:
 
 ### Supported plotters
 
-To see the available plotters, you can use the `show_available_plotters()`
-method on the `plotter` attribute of the `Project` instance:
+To see the available plotters, you can use the
+`show_available_plotters()` method on the `plotter` attribute of the
+`Project` instance:
 
 ```python
 project.plotter.show_supported_engines()
@@ -167,16 +172,19 @@ An example of the output is:
 
 ## Data analysis workflow
 
-Once the EasyDiffraction package is imported, you can proceed with the **data
-analysis**. This step can be split into several sub-steps, such as creating a
-project, defining structures, adding experimental data, etc.
-
-EasyDiffraction provides a **Python API** that allows you to perform these steps
-programmatically in a certain linear order. This is especially useful for users
-who prefer to work in a script or Jupyter Notebook environment. The API is
-designed to be intuitive and easy to use, allowing you to focus on the analysis
-rather than low-level implementation details.
-
-Because this workflow is an important part of the EasyDiffraction package, it is
-described in detail in the separate
-[Analysis Workflow](analysis-workflow/index.md) section of the documentation.
+Once the EasyDiffraction package is imported, you can proceed with the
+**data analysis**. This step can be split into several sub-steps, such
+as creating a project, defining structures, adding experimental data,
+etc.
+
+EasyDiffraction provides a **Python API** that allows you to perform
+these steps programmatically in a certain linear order. This is
+especially useful for users who prefer to work in a script or Jupyter
+Notebook environment. The API is designed to be intuitive and easy to
+use, allowing you to focus on the analysis rather than low-level
+implementation details.
+
+Because this workflow is an important part of the EasyDiffraction
+package, it is described in detail in the separate
+[Analysis Workflow](analysis-workflow/index.md) section of the
+documentation.
diff --git a/docs/user-guide/glossary.md b/docs/docs/user-guide/glossary.md
similarity index 80%
rename from docs/user-guide/glossary.md
rename to docs/docs/user-guide/glossary.md
index 827cfdf5..75f0300c 100644
--- a/docs/user-guide/glossary.md
+++ b/docs/docs/user-guide/glossary.md
@@ -1,25 +1,29 @@
 # Glossary
 
-Before guiding you through the use of EasyDiffraction, we define some common
-terms and abbreviations used throughout the documentation and tutorials.
+Before guiding you through the use of EasyDiffraction, we define some
+common terms and abbreviations used throughout the documentation and
+tutorials.
 
 ## Dictionary Type Labels
 
-The following labels are used to identify different types of CIF dictionaries:
+The following labels are used to identify different types of CIF
+dictionaries:
 
 - [coreCIF][1]{:.label-cif} – Core CIF dictionary by the
   [IUCr](https://www.iucr.org).
 - [pdCIF][2]{:.label-cif} – Powder CIF dictionary by the
   [IUCr](https://www.iucr.org).
-- [easydiffractionCIF][0]{:.label-cif} – Custom CIF dictionary developed for
-  EasyDiffraction.
+- [easydiffractionCIF][0]{:.label-cif} – Custom CIF dictionary developed
+  for EasyDiffraction.
 
-For more information about CIF, see the [Data Format](data-format.md) section.
+For more information about CIF, see the [Data Format](data-format.md)
+section.
 
 ## Experiment Type Labels
 
-EasyDiffraction supports a variety of experiment types, each with its own set of
-parameters. The following labels identify the supported experiment types:
+EasyDiffraction supports a variety of experiment types, each with its
+own set of parameters. The following labels identify the supported
+experiment types:
 
 ### Neutron Diffraction
 
@@ -27,8 +31,8 @@ parameters. The following labels identify the supported experiment types:
   constant wavelength.
 - [pd-neut-tof][0]{:.label-experiment} – Powder neutron diffraction with
   time-of-flight.
-- [sc-neut-cwl][0]{:.label-experiment} – Single-crystal neutron diffraction with
-  constant wavelength.
+- [sc-neut-cwl][0]{:.label-experiment} – Single-crystal neutron
+  diffraction with constant wavelength.
 
 ### X-ray Diffraction
 
diff --git a/docs/user-guide/index.md b/docs/docs/user-guide/index.md
similarity index 57%
rename from docs/user-guide/index.md
rename to docs/docs/user-guide/index.md
index a6671f3d..2ddc28b9 100644
--- a/docs/user-guide/index.md
+++ b/docs/docs/user-guide/index.md
@@ -4,20 +4,21 @@ icon: material/book-open-variant
 
 # :material-book-open-variant: User Guide
 
-This section provides an overview of the **core concepts**, **key parameters**
-and **workflow steps** required for using EasyDiffraction effectively.
+This section provides an overview of the **core concepts**, **key
+parameters** and **workflow steps** required for using EasyDiffraction
+effectively.
 
 Here is a brief overview of the User Guide sections:
 
-- [Glossary](glossary.md) – Defines common terms and labels used throughout the
-  documentation.
-- [Concept](concept.md) – Introduces the overall idea behind diffraction data
-  processing and where EasyDiffraction fits.
-- [Data Format](data-format.md) – Explains the Crystallographic Information File
-  (CIF) and how it's used in EasyDiffraction.
-- [Parameters](parameters.md) – Describes how parameters are structured, named,
-  and accessed within the EasyDiffraction library.
-- [First Steps](first-steps.md) – Shows how to begin using EasyDiffraction in
-  Python or Jupyter notebooks.
+- [Glossary](glossary.md) – Defines common terms and labels used
+  throughout the documentation.
+- [Concept](concept.md) – Introduces the overall idea behind diffraction
+  data processing and where EasyDiffraction fits.
+- [Data Format](data-format.md) – Explains the Crystallographic
+  Information File (CIF) and how it's used in EasyDiffraction.
+- [Parameters](parameters.md) – Describes how parameters are structured,
+  named, and accessed within the EasyDiffraction library.
+- [First Steps](first-steps.md) – Shows how to begin using
+  EasyDiffraction in Python or Jupyter notebooks.
 - [Analysis Workflow](analysis-workflow/index.md) – Breaks down the data
   analysis pipeline into practical, sequential steps.
diff --git a/docs/user-guide/parameters.md b/docs/docs/user-guide/parameters.md
similarity index 90%
rename from docs/user-guide/parameters.md
rename to docs/docs/user-guide/parameters.md
index 794f65aa..622bf6f1 100644
--- a/docs/user-guide/parameters.md
+++ b/docs/docs/user-guide/parameters.md
@@ -1,52 +1,58 @@
 # Parameters
 
-The data analysis process, introduced in the [Concept](concept.md) section,
-assumes that you mainly work with different parameters. The parameters are used
-to describe the structure and the experiment and are required to set up the
-analysis.
+The data analysis process, introduced in the [Concept](concept.md)
+section, assumes that you mainly work with different parameters. The
+parameters are used to describe the structure and the experiment and are
+required to set up the analysis.
 
-Each parameter in EasyDiffraction has a specific name used for code reference,
-and it belongs to a specific category.
+Each parameter in EasyDiffraction has a specific name used for code
+reference, and it belongs to a specific category.
 
 - In many cases, the EasyDiffraction name is the same as the CIF name.
-- In some cases, the EasyDiffraction name is a slightly modified version of the
-  CIF name to comply with Python naming conventions. For example, `name_H-M_alt`
-  becomes `name_h_m`, replacing hyphens with underscores and using lowercase
-  letters.
-- In rare cases, the EasyDiffraction name is a bit shorter, like `b_iso` instead
-  of CIF `B_iso_or_equiv`, to make the code a bit more user-friendly.
-- When there is no defined CIF name for a parameter, EasyDiffraction introduces
-  its own name, which is used in the code as well as an equivalent CIF name to
-  be placed in the custom CIF dictionary `easydiffractionCIF`.
-
-EasyDiffraction names are used in code, while CIF names are used to store and
-retrieve the full state of a data analysis project in CIF format. You can find
-more about the project in the [Project](analysis-workflow/project.md) section.
+- In some cases, the EasyDiffraction name is a slightly modified version
+  of the CIF name to comply with Python naming conventions. For example,
+  `name_H-M_alt` becomes `name_h_m`, replacing hyphens with underscores
+  and using lowercase letters.
+- In rare cases, the EasyDiffraction name is a bit shorter, like `b_iso`
+  instead of CIF `B_iso_or_equiv`, to make the code a bit more
+  user-friendly.
+- When there is no defined CIF name for a parameter, EasyDiffraction
+  introduces its own name, which is used in the code as well as an
+  equivalent CIF name to be placed in the custom CIF dictionary
+  `easydiffractionCIF`.
+
+EasyDiffraction names are used in code, while CIF names are used to
+store and retrieve the full state of a data analysis project in CIF
+format. You can find more about the project in the
+[Project](analysis-workflow/project.md) section.
 
 ## Parameter Attributes
 
-Parameters in EasyDiffraction are more than just variables. They are objects
-that, in addition to the name and value, also include attributes such as the
-description, unit, uncertainty, minimum and maximum values, etc. All these
-attributes are described in the [API Reference](../api-reference/index.md)
-section. Examples of how to use these parameters in code are provided in the
+Parameters in EasyDiffraction are more than just variables. They are
+objects that, in addition to the name and value, also include attributes
+such as the description, unit, uncertainty, minimum and maximum values,
+etc. All these attributes are described in the
+[API Reference](../api-reference/index.md) section. Examples of how to
+use these parameters in code are provided in the
 [Analysis Workflow](analysis-workflow/index.md) and
 [Tutorials](../tutorials/index.md) sections.
 
-The most important attribute, besides `name` and `value`, is `free`, which is
-used to define whether the parameter is free or fixed for optimization during
-the fitting process. The `free` attribute is set to `False` by default, which
-means the parameter is fixed. To optimize a parameter, set `free` to `True`.
+The most important attribute, besides `name` and `value`, is `free`,
+which is used to define whether the parameter is free or fixed for
+optimization during the fitting process. The `free` attribute is set to
+`False` by default, which means the parameter is fixed. To optimize a
+parameter, set `free` to `True`.
 
-Although parameters are central, EasyDiffraction hides their creation and
-attribute handling from the user. The user only accesses the required parameters
-through the top-level objects, such as `project`, `structures`, `experiments`,
-etc. The parameters are created and initialized automatically when a new project
-is created or an existing one is loaded.
+Although parameters are central, EasyDiffraction hides their creation
+and attribute handling from the user. The user only accesses the
+required parameters through the top-level objects, such as `project`,
+`structures`, `experiments`, etc. The parameters are created and
+initialized automatically when a new project is created or an existing
+one is loaded.
 
 In the following sections, you can see a list of the parameters used in
-EasyDiffraction. Use the tabs to switch between how to access a parameter in
-code and its CIF name for serialization.
+EasyDiffraction. Use the tabs to switch between how to access a
+parameter in code and its CIF name for serialization.
 
 !!! warning "Important"
 
@@ -59,23 +65,27 @@ code and its CIF name for serialization.
     project.structures['nacl'].space_group.name_h_m
     ```
 
-In the example above, `space_group` is a structure category, and `name_h_m` is
-the parameter. For simplicity, only the last part (`category.parameter`) of the
-full access name will be shown in the tables below.
+In the example above, `space_group` is a structure category, and
+`name_h_m` is the parameter. For simplicity, only the last part
+(`category.parameter`) of the full access name will be shown in the
+tables below.
 
-In addition, the CIF names are also provided for each parameter, which are used
-to serialize the parameters in the CIF format.
+In addition, the CIF names are also provided for each parameter, which
+are used to serialize the parameters in the CIF format.
 
-Tags defining the corresponding experiment type are also given before the table.
+Tags defining the corresponding experiment type are also given before
+the table.
 
 ## Structure parameters
 
-Below is a list of parameters used to describe the structure in EasyDiffraction.
+Below is a list of parameters used to describe the structure in
+EasyDiffraction.
 
 ### Crystall structure parameters
 
-[pd-neut-cwl][3]{:.label-experiment} [pd-neut-tof][3]{:.label-experiment}
-[pd-xray][3]{:.label-experiment} [sc-neut-cwl][3]{:.label-experiment}
+[pd-neut-cwl][3]{:.label-experiment}
+[pd-neut-tof][3]{:.label-experiment} [pd-xray][3]{:.label-experiment}
+[sc-neut-cwl][3]{:.label-experiment}
 
 === "How to access in the code"
 
@@ -130,8 +140,9 @@ EasyDiffraction.
 
 ### Common parameters
 
-[pd-neut-cwl][3]{:.label-experiment} [pd-neut-tof][3]{:.label-experiment}
-[pd-xray][3]{:.label-experiment} [sc-neut-cwl][3]{:.label-experiment}
+[pd-neut-cwl][3]{:.label-experiment}
+[pd-neut-tof][3]{:.label-experiment} [pd-xray][3]{:.label-experiment}
+[sc-neut-cwl][3]{:.label-experiment}
 
 === "How to access in the code"
 
@@ -153,8 +164,8 @@ EasyDiffraction.
 
 ### Standard powder diffraction
 
-[pd-neut-cwl][3]{:.label-experiment} [pd-neut-tof][3]{:.label-experiment}
-[pd-xray][3]{:.label-experiment}
+[pd-neut-cwl][3]{:.label-experiment}
+[pd-neut-tof][3]{:.label-experiment} [pd-xray][3]{:.label-experiment}
 
 === "How to access in the code"
 
@@ -240,7 +251,8 @@ EasyDiffraction.
 
 ### Total scattering
 
-[pd-neut-total][3]{:.label-experiment} [pd-xray-total][3]{:.label-experiment}
+[pd-neut-total][3]{:.label-experiment}
+[pd-xray-total][3]{:.label-experiment}
 
 === "How to access in the code"
 
diff --git a/docs/user-guide/parameters/_diffrn_radiation.md b/docs/docs/user-guide/parameters/_diffrn_radiation.md
similarity index 87%
rename from docs/user-guide/parameters/_diffrn_radiation.md
rename to docs/docs/user-guide/parameters/_diffrn_radiation.md
index e3c0a7e9..6e2f0a06 100644
--- a/docs/user-guide/parameters/_diffrn_radiation.md
+++ b/docs/docs/user-guide/parameters/_diffrn_radiation.md
@@ -4,13 +4,13 @@
 
 Data items in this category describe the radiation used in measuring the
 diffraction intensities. Please see the
-[IUCr page](https://www.iucr.org/resources/cif/dictionaries/browse/cif_pd) for
-further details.
+[IUCr page](https://www.iucr.org/resources/cif/dictionaries/browse/cif_pd)
+for further details.
 
 ## [\_diffrn_radiation.probe](https://www.iucr.org/resources/cif/dictionaries/browse/cif_pd)
 
-The nature of the radiation used (i.e. the name of the subatomic particle or the
-region of the electromagnetic spectrum).
+The nature of the radiation used (i.e. the name of the subatomic
+particle or the region of the electromagnetic spectrum).
 
 Supported values: `neutron` and `x-ray`
 
diff --git a/docs/user-guide/parameters/_diffrn_radiation_wavelength.md b/docs/docs/user-guide/parameters/_diffrn_radiation_wavelength.md
similarity index 95%
rename from docs/user-guide/parameters/_diffrn_radiation_wavelength.md
rename to docs/docs/user-guide/parameters/_diffrn_radiation_wavelength.md
index 4d205788..3b750b22 100644
--- a/docs/user-guide/parameters/_diffrn_radiation_wavelength.md
+++ b/docs/docs/user-guide/parameters/_diffrn_radiation_wavelength.md
@@ -4,8 +4,8 @@
 
 Data items in this category describe the wavelength of radiation used in
 diffraction measurements. Please see the
-[IUCr page](https://www.iucr.org/resources/cif/dictionaries/browse/cif_pd) for
-further details.
+[IUCr page](https://www.iucr.org/resources/cif/dictionaries/browse/cif_pd)
+for further details.
 
 ## [\_diffrn_radiation_wavelength.wavelength](https://www.iucr.org/resources/cif/dictionaries/browse/cif_pd)
 
diff --git a/docs/user-guide/parameters/_exptl_crystal.md b/docs/docs/user-guide/parameters/_exptl_crystal.md
similarity index 100%
rename from docs/user-guide/parameters/_exptl_crystal.md
rename to docs/docs/user-guide/parameters/_exptl_crystal.md
diff --git a/docs/user-guide/parameters/_extinction.md b/docs/docs/user-guide/parameters/_extinction.md
similarity index 100%
rename from docs/user-guide/parameters/_extinction.md
rename to docs/docs/user-guide/parameters/_extinction.md
diff --git a/docs/user-guide/parameters/_pd_calib.md b/docs/docs/user-guide/parameters/_pd_calib.md
similarity index 94%
rename from docs/user-guide/parameters/_pd_calib.md
rename to docs/docs/user-guide/parameters/_pd_calib.md
index 2b96a4c8..407c5f73 100644
--- a/docs/user-guide/parameters/_pd_calib.md
+++ b/docs/docs/user-guide/parameters/_pd_calib.md
@@ -2,8 +2,8 @@
 
 # \_pd_calib
 
-This section defines the parameters used for the calibration of the instrument,
-similar to this
+This section defines the parameters used for the calibration of the
+instrument, similar to this
 [IUCr section](https://www.iucr.org/resources/cif/dictionaries/browse/cif_pd).
 
 ## [\_pd_calib.2theta_offset](https://www.iucr.org/resources/cif/dictionaries/browse/cif_pd)
diff --git a/docs/user-guide/parameters/atom_site.md b/docs/docs/user-guide/parameters/atom_site.md
similarity index 82%
rename from docs/user-guide/parameters/atom_site.md
rename to docs/docs/user-guide/parameters/atom_site.md
index 44325b8a..7acdb650 100644
--- a/docs/user-guide/parameters/atom_site.md
+++ b/docs/docs/user-guide/parameters/atom_site.md
@@ -2,16 +2,16 @@
 
 # \_atom_site
 
-Data items in this category record details about the atom sites in a crystal
-structure, such as the positional coordinates and atomic displacement
-parameters. Please see the
+Data items in this category record details about the atom sites in a
+crystal structure, such as the positional coordinates and atomic
+displacement parameters. Please see the
 [IUCr page](https://www.iucr.org/__data/iucr/cifdic_html/3/CORE_DIC/CATOM_SITE.html)
 for further details.
 
 ## [\_atom_site.label](https://www.iucr.org/__data/iucr/cifdic_html/3/CORE_DIC/Iatom_site.label.html)
 
-This is a unique identifier for a particular site in the asymmetric unit of the
-crystal unit cell.
+This is a unique identifier for a particular site in the asymmetric unit
+of the crystal unit cell.
 
 ## [\_atom_site.type_symbol](https://www.iucr.org/__data/iucr/cifdic_html/3/CORE_DIC/Iatom_site.type_symbol.html)
 
@@ -19,7 +19,8 @@ A code to identify the atom specie(s) occupying this site.
 
 ## \_atom_site.fract
 
-Atom-site coordinates as fractions of the [\_cell_length](cell.md) values.
+Atom-site coordinates as fractions of the [\_cell_length](cell.md)
+values.
 
 - [\_atom_site.fract_x](https://www.iucr.org/__data/iucr/cifdic_html/3/CORE_DIC/Iatom_site.fract_x.html)
 - [\_atom_site.fract_y](https://www.iucr.org/__data/iucr/cifdic_html/3/CORE_DIC/Iatom_site.fract_y.html)
@@ -31,8 +32,8 @@ The fraction of the atom type present at this site.
 
 ## [\_atom_site.ADP_type](https://www.iucr.org/__data/iucr/cifdic_html/3/CORE_DIC/Iatom_site.adp_type.html)
 
-Code for type of atomic displacement parameters used for the site. Currently
-only `Biso` (isotropic B) is supported.
+Code for type of atomic displacement parameters used for the site.
+Currently only `Biso` (isotropic B) is supported.
 
 ## [\_atom_site.B_iso_or_equiv](https://www.iucr.org/__data/iucr/cifdic_html/3/CORE_DIC/Iatom_site.B_iso_or_equiv.html)
 
@@ -43,17 +44,17 @@ displacement parameter, in angstroms squared.
 
 `optional parameter`
 
-The number of different sites that are generated by the application of the
-space-group symmetry to the coordinates given for this site. It is equal to the
-multiplicity given for this Wyckoff site in International Tables for
-Crystallography Vol. A (2002).
+The number of different sites that are generated by the application of
+the space-group symmetry to the coordinates given for this site. It is
+equal to the multiplicity given for this Wyckoff site in International
+Tables for Crystallography Vol. A (2002).
 
 ## [\_atom_site.Wyckoff_symbol](https://www.iucr.org/__data/iucr/cifdic_html/3/CORE_DIC/Iatom_site.Wyckoff_symbol.html)
 
 `optional parameter`
 
-The Wyckoff symbol (letter) as listed in the space-group tables of International
-Tables for Crystallography Vol. A.
+The Wyckoff symbol (letter) as listed in the space-group tables of
+International Tables for Crystallography Vol. A.
 
 <!-- prettier-ignore-start -->
 [0]: #
diff --git a/docs/user-guide/parameters/background.md b/docs/docs/user-guide/parameters/background.md
similarity index 75%
rename from docs/user-guide/parameters/background.md
rename to docs/docs/user-guide/parameters/background.md
index 89985470..e307c981 100644
--- a/docs/user-guide/parameters/background.md
+++ b/docs/docs/user-guide/parameters/background.md
@@ -2,26 +2,27 @@
 
 # \_pd_background
 
-This category defines various background functions that could be used when
-calculating diffractograms. Please see the
-[IUCr page](https://www.iucr.org/resources/cif/dictionaries/browse/cif_pd) for
-further details.
+This category defines various background functions that could be used
+when calculating diffractograms. Please see the
+[IUCr page](https://www.iucr.org/resources/cif/dictionaries/browse/cif_pd)
+for further details.
 
 ## [\_pd_background.line_segment_X](https://www.iucr.org/resources/cif/dictionaries/browse/cif_pd)
 
-List of X-coordinates used to create many straight-line segments representing
-the background in a calculated diffractogram.
+List of X-coordinates used to create many straight-line segments
+representing the background in a calculated diffractogram.
 
 Supported values: `2theta` and `time-of-flight`
 
 ## [\_pd_background.line_segment_intensity](https://www.iucr.org/resources/cif/dictionaries/browse/cif_pd)
 
-List of intensities used to create many straight-line segments representing the
-background in a calculated diffractogram.
+List of intensities used to create many straight-line segments
+representing the background in a calculated diffractogram.
 
 ## [\_pd_background.X_coordinate](https://www.iucr.org/resources/cif/dictionaries/browse/cif_pd)
 
-The type of X-coordinate against which the pd_background values were calculated.
+The type of X-coordinate against which the pd_background values were
+calculated.
 
 <!-- prettier-ignore-start -->
 [0]: #
diff --git a/docs/user-guide/parameters/cell.md b/docs/docs/user-guide/parameters/cell.md
similarity index 95%
rename from docs/user-guide/parameters/cell.md
rename to docs/docs/user-guide/parameters/cell.md
index 5aeb12ae..806df516 100644
--- a/docs/user-guide/parameters/cell.md
+++ b/docs/docs/user-guide/parameters/cell.md
@@ -2,8 +2,8 @@
 
 # \_cell
 
-Data items in this category record details about the crystallographic cell
-parameters and their measurement. Please see the
+Data items in this category record details about the crystallographic
+cell parameters and their measurement. Please see the
 [IUCr page](https://www.iucr.org/__data/iucr/cifdic_html/3/CORE_DIC/CCELL.html)
 for further details.
 
diff --git a/docs/user-guide/parameters/expt_type.md b/docs/docs/user-guide/parameters/expt_type.md
similarity index 95%
rename from docs/user-guide/parameters/expt_type.md
rename to docs/docs/user-guide/parameters/expt_type.md
index 5aeb12ae..806df516 100644
--- a/docs/user-guide/parameters/expt_type.md
+++ b/docs/docs/user-guide/parameters/expt_type.md
@@ -2,8 +2,8 @@
 
 # \_cell
 
-Data items in this category record details about the crystallographic cell
-parameters and their measurement. Please see the
+Data items in this category record details about the crystallographic
+cell parameters and their measurement. Please see the
 [IUCr page](https://www.iucr.org/__data/iucr/cifdic_html/3/CORE_DIC/CCELL.html)
 for further details.
 
diff --git a/docs/user-guide/parameters/instrument.md b/docs/docs/user-guide/parameters/instrument.md
similarity index 73%
rename from docs/user-guide/parameters/instrument.md
rename to docs/docs/user-guide/parameters/instrument.md
index 3975161c..fbeca6c9 100644
--- a/docs/user-guide/parameters/instrument.md
+++ b/docs/docs/user-guide/parameters/instrument.md
@@ -2,21 +2,22 @@
 
 # \_pd_instr
 
-This section contains information relevant to the instrument used for the
-diffraction measurement, similar to this
+This section contains information relevant to the instrument used for
+the diffraction measurement, similar to this
 [IUCr section](https://www.iucr.org/resources/cif/dictionaries/browse/cif_pd).
 
 ## [\_pd_instr.resolution](#)
 
-In general, the profile of a Bragg reflection centred at the peak position can
-be approximated by mathematical convolution of contributions from the
-instrument, called the instrumental resolution function, and from the
-microstructure of the sample. Because many contributions to powder diffraction
-peaks have a nearly Gaussian or Lorentzian shape, the pseudo-Voigt function, is
-widely used to describe peak profiles in powder diffraction.
+In general, the profile of a Bragg reflection centred at the peak
+position can be approximated by mathematical convolution of
+contributions from the instrument, called the instrumental resolution
+function, and from the microstructure of the sample. Because many
+contributions to powder diffraction peaks have a nearly Gaussian or
+Lorentzian shape, the pseudo-Voigt function, is widely used to describe
+peak profiles in powder diffraction.
 
-Half-width parameters (normally characterising the instrumental resolution
-function) as implemented in [CrysPy](https://cryspy.fr):
+Half-width parameters (normally characterising the instrumental
+resolution function) as implemented in [CrysPy](https://cryspy.fr):
 
 - \_pd_instr.resolution_u
 - \_pd_instr.resolution_v
@@ -34,7 +35,8 @@ Lorentzian isotropic particle size parameteras implemented in
 
 ## [\_pd_instr.reflex_asymmetry](#)
 
-Peak profile asymmetry parameters as implemented in [CrysPy](https://cryspy.fr).
+Peak profile asymmetry parameters as implemented in
+[CrysPy](https://cryspy.fr).
 
 - \_pd_instr.reflex_asymmetry_p1
 - \_pd_instr.reflex_asymmetry_p2
diff --git a/docs/user-guide/parameters/linked_phases.md b/docs/docs/user-guide/parameters/linked_phases.md
similarity index 86%
rename from docs/user-guide/parameters/linked_phases.md
rename to docs/docs/user-guide/parameters/linked_phases.md
index df3f6d29..1d00f1d2 100644
--- a/docs/user-guide/parameters/linked_phases.md
+++ b/docs/docs/user-guide/parameters/linked_phases.md
@@ -2,10 +2,10 @@
 
 # \_pd_phase_block
 
-A table of phases relevant to the current data block. Each phase is identified
-by its data block identifier. Please see the
-[IUCr page](https://www.iucr.org/resources/cif/dictionaries/browse/cif_pd) for
-further details.
+A table of phases relevant to the current data block. Each phase is
+identified by its data block identifier. Please see the
+[IUCr page](https://www.iucr.org/resources/cif/dictionaries/browse/cif_pd)
+for further details.
 
 ## [\_pd_phase_block.id](https://www.iucr.org/resources/cif/dictionaries/browse/cif_pd)
 
diff --git a/docs/user-guide/parameters/pd_meas.md b/docs/docs/user-guide/parameters/pd_meas.md
similarity index 97%
rename from docs/user-guide/parameters/pd_meas.md
rename to docs/docs/user-guide/parameters/pd_meas.md
index b294a96a..fcb4db17 100644
--- a/docs/user-guide/parameters/pd_meas.md
+++ b/docs/docs/user-guide/parameters/pd_meas.md
@@ -7,8 +7,8 @@ This section contains the measured diffractogram, similar to this
 
 ## [\_pd_meas.2theta_scan](https://raw.githubusercontent.com/COMCIFS/Powder_Dictionary/master/cif_pow.dic)
 
-2θ diffraction angle (in degrees) for intensity points measured in a scanning
-method.
+2θ diffraction angle (in degrees) for intensity points measured in a
+scanning method.
 
 ## [\_pd_meas.time-of-flight](https://raw.githubusercontent.com/COMCIFS/Powder_Dictionary/master/cif_pow.dic)
 
diff --git a/docs/user-guide/parameters/peak.md b/docs/docs/user-guide/parameters/peak.md
similarity index 95%
rename from docs/user-guide/parameters/peak.md
rename to docs/docs/user-guide/parameters/peak.md
index 5aeb12ae..806df516 100644
--- a/docs/user-guide/parameters/peak.md
+++ b/docs/docs/user-guide/parameters/peak.md
@@ -2,8 +2,8 @@
 
 # \_cell
 
-Data items in this category record details about the crystallographic cell
-parameters and their measurement. Please see the
+Data items in this category record details about the crystallographic
+cell parameters and their measurement. Please see the
 [IUCr page](https://www.iucr.org/__data/iucr/cifdic_html/3/CORE_DIC/CCELL.html)
 for further details.
 
diff --git a/docs/user-guide/parameters/space_group.md b/docs/docs/user-guide/parameters/space_group.md
similarity index 87%
rename from docs/user-guide/parameters/space_group.md
rename to docs/docs/user-guide/parameters/space_group.md
index 883be103..ae5bce6b 100644
--- a/docs/user-guide/parameters/space_group.md
+++ b/docs/docs/user-guide/parameters/space_group.md
@@ -2,16 +2,16 @@
 
 # \_space_group
 
-Contains all the data items that refer to the space group as a whole. Please see
-the
+Contains all the data items that refer to the space group as a whole.
+Please see the
 [IUCr page](https://www.iucr.org/__data/iucr/cifdic_html/3/CORE_DIC/CSPACE_GROUP.html)
 for further details.
 
 ## [\_space_group.name_H-M_alt](https://www.iucr.org/__data/iucr/cifdic_html/3/CORE_DIC/Ispace_group.name_H-M_alt.html)
 
-The international Hermann-Mauguin space-group symbol as defined in International
-Tables for Crystallography Volume A. It allows any Hermann-Mauguin symbol to be
-given.
+The international Hermann-Mauguin space-group symbol as defined in
+International Tables for Crystallography Volume A. It allows any
+Hermann-Mauguin symbol to be given.
 
 ## [\_space_group.IT_coordinate_system_code](https://www.iucr.org/__data/iucr/cifdic_html/3/CORE_DIC/Ispace_group.IT_coordinate_system_code.html)
 
diff --git a/docs/includes/abbreviations.md b/docs/includes/abbreviations.md
new file mode 100644
index 00000000..682f16ff
--- /dev/null
+++ b/docs/includes/abbreviations.md
@@ -0,0 +1,15 @@
+<!-- prettier-ignore-start -->
+
+*[CIF]: Crystallographic Information File.
+*[curl]: Command-line tool for transferring data with URLs.
+*[GitHub]: A web-based platform for version control and collaboration.
+*[Google Colab]: Cloud service that allows you to run Jupyter Notebooks in the cloud.
+*[IUCr]: International Union of Crystallography.
+*[Jupyter Notebook]: An open-source web application that allows you to create and share documents that contain live code, equations, visualizations, and narrative text.
+*[JupyterLab]: Web-based interactive development environment for notebooks, code, and data.
+*[pip]: Package installer for Python.
+*[PyPI]: The Python Package Index is a repository of software for the Python programming language.
+*[Conda]: Conda is a cross-platform, language-agnostic binary package manager.
+*[Pixi]: A modern package manager for Windows, macOS, and Linux.
+
+<!-- prettier-ignore-end -->
diff --git a/docs/mkdocs.yml b/docs/mkdocs.yml
index 467bfec8..55ca5f22 100644
--- a/docs/mkdocs.yml
+++ b/docs/mkdocs.yml
@@ -1,45 +1,167 @@
-###########################
-# Override default settings
-###########################
-
 # Project information
-site_name: '' #EasyDiffraction Library
-site_url: https://easyscience.github.io/diffraction-lib/ #https://docs.easydiffraction.org/lib/
+site_name: EasyDiffraction Library
+site_url: https://easyscience.github.io/diffraction-lib
 
 # Repository
-repo_url: https://github.com/easyscience/diffraction-lib/
+repo_url: https://github.com/easyscience/diffraction-lib
 edit_uri: edit/develop/docs/
 
 # Copyright
-copyright: © 2026 EasyDiffraction
+copyright: © 2021-2026 EasyDiffraction
+
+# Sets the theme and theme-specific configuration
+theme:
+  name: material
+  custom_dir: overrides
+  features:
+    #- content.action.edit # Temporary disable edit button (until decided on which branch to use and where to host the notebooks)
+    #- content.action.view
+    - content.code.annotate
+    - content.code.copy # Auto generated button to copy a code block's content
+    - content.tooltips
+    - navigation.footer
+    - navigation.indexes
+    #- navigation.instant # Instant loading, but it causes issues with rendering equations
+    #- navigation.sections
+    - navigation.top # Back-to-top button
+    - navigation.tracking # Anchor tracking
+    - search.highlight
+    - search.share
+    - search.suggest
+    - toc.follow
+  palette:
+    # Palette toggle for light mode
+    - media: '(prefers-color-scheme: light)'
+      scheme: default
+      primary: custom
+      toggle:
+        icon: fontawesome/solid/sun
+        name: Switch to dark mode
+    # Palette toggle for dark mode
+    - media: '(prefers-color-scheme: dark)'
+      scheme: slate
+      primary: custom
+      toggle:
+        icon: fontawesome/solid/moon
+        name: Switch to light mode
+  font:
+    text: Mulish
+    code: Roboto Mono
+  icon:
+    edit: material/file-edit-outline
+  favicon: assets/images/favicon.png
+  logo_dark_mode: assets/images/logo_dark.svg
+  logo_light_mode: assets/images/logo_light.svg
 
-# Extra icons in the bottom right corner
+# A set of key-value pairs, where the values can be any valid YAML
+# construct, that will be passed to the template
 extra:
-  social:
+  generator: false # Disable `Made with Material for MkDocs` (bottom left)
+  social: # Extra icons in the bottom right corner
+    - icon: easyscience # File: overrides/.icons/easyscience.svg
+      link: https://easyscience.org
+      name: EasyScience Framework Webpage
     - icon: easydiffraction # File: overrides/.icons/easydiffraction.svg
-      link: https://easydiffraction.org
+      link: https://easyscience.github.io/diffraction
       name: EasyDiffraction Main Webpage
     - icon: app # File: overrides/.icons/app.svg
-      link: https://docs.easydiffraction.org/app/
+      link: https://easyscience.github.io/diffraction-app
       name: EasyDiffraction Application Docs
     - icon: fontawesome/brands/github # Name as in Font Awesome
       link: https://github.com/easyscience/diffraction-lib
       name: EasyDiffraction Library Source Code on GitHub
+  # Set custom variables to be used in Markdown and HTML files
+  vars:
+    ci_branch: !ENV CI_BRANCH
+    github_repository: !ENV GITHUB_REPOSITORY
+    release_version: !ENV RELEASE_VERSION
+    docs_version: !ENV DOCS_VERSION
+    notebooks_dir: !ENV NOTEBOOKS_DIR
+  # Renders a version selector in the header
+  version:
+    provider: mike
+
+# Customization to be included by the theme
+extra_css:
+  - assets/stylesheets/extra.css
+
+extra_javascript:
+  - assets/javascripts/extra.js
+  # MathJax for rendering mathematical expressions
+  - assets/javascripts/mathjax.js # Custom MathJax config to ensure compatibility with mkdocs-jupyter
+  - https://unpkg.com/mathjax@3/es5/tex-mml-chtml.js # Official MathJax CDN
+
+# A list of extensions beyond the ones that MkDocs uses by default (meta, toc, tables, and fenced_code)
+markdown_extensions:
+  - abbr
+  - admonition
+  - attr_list
+  - def_list
+  - footnotes
+  - pymdownx.arithmatex: # rendering of equations and integrates with MathJax or KaTeX
+      generic: true
+  - pymdownx.blocks.caption
+  - pymdownx.details
+  - pymdownx.emoji:
+      emoji_index: !!python/name:material.extensions.emoji.twemoji
+      emoji_generator: !!python/name:material.extensions.emoji.to_svg
+      options:
+        custom_icons:
+          - docs/overrides/.icons
+  - pymdownx.highlight: # whether highlighting should be carried out during build time by Pygments
+      use_pygments: true
+      pygments_lang_class: true
+  - pymdownx.snippets:
+      auto_append:
+        - docs/includes/abbreviations.md
+  - pymdownx.superfences: # whether highlighting should be carried out during build time by Pygments
+      custom_fences:
+        - name: mermaid
+          class: mermaid
+          format: !!python/name:pymdownx.superfences.fence_code_format
+  - pymdownx.tabbed: # enables content tabs
+      alternate_style: true
+  - pymdownx.tasklist:
+      custom_checkbox: true
+  - toc:
+      toc_depth: 3
 
-# Jupyter notebooks
+# A list of plugins (with optional configuration settings) to use when building the site
 plugins:
+  - autorefs
+  - inline-svg
+  - markdownextradata # Plugin that injects the mkdocs.yml extra variables into the Markdown template
+  - mike # Plugin that makes it easy to deploy multiple versions of the docs
   - mkdocs-jupyter:
-      execute_ignore:
-        - '*.ipynb' # Do not execute any notebooks
-#        - 'quick*.ipynb'
-#        - 'basic*.ipynb'
-#        - 'advanced*.ipynb'
-#        - 'cryst*.ipynb'
-#        - 'pdf*.ipynb'
+      include: ['*.ipynb'] # Default: ['*.py', '*.ipynb']
+      execute: false # Do not execute notebooks during build. They are expected to be pre-executed.
+      allow_errors: false
+      include_source: true
+      include_requirejs: true # Required for Plotly
+      #custom_mathjax_url: 'https://unpkg.com/mathjax@3/es5/tex-mml-chtml.js' # See 'extra_javascript' above
+      ignore_h1_titles: true # Use titles defined in the nav section below
+      remove_tag_config:
+        remove_input_tags:
+          - hide-in-docs
+  - mkdocstrings:
+      handlers:
+        python:
+          paths: ['src'] # Change 'src' to your actual sources directory
+          options:
+            docstring_style: numpy
+            group_by_category: false
+            heading_level: 1
+            show_root_heading: true
+            show_root_full_path: false
+            show_submodules: true
+            show_source: true
+  - search
 
-##################
-# Add new settings
-##################
+# Determines additional directories to watch when running mkdocs serve
+watch:
+  - includes
+  - overrides
+  - ../src
 
 # Exclude files and folders from the global navigation
 not_in_nav: |
@@ -100,7 +222,6 @@ nav:
           - experiment: api-reference/datablocks/experiment.md
           - structure: api-reference/datablocks/structure.md
       - display: api-reference/display.md
-      - experiments: api-reference/experiment.md
       - io: api-reference/io.md
       - project: api-reference/project.md
       - summary: api-reference/summary.md
diff --git a/docs/overrides/.icons/app.svg b/docs/overrides/.icons/app.svg
new file mode 100644
index 00000000..b4fdd4f3
--- /dev/null
+++ b/docs/overrides/.icons/app.svg
@@ -0,0 +1,4 @@
+<?xml version="1.0" encoding="utf-8"?>
+<svg xmlns="http://www.w3.org/2000/svg" height="24px" viewBox="0 0 800 800" width="24px" fill="#000000">
+  <path d="M 80 662.5 L 720 662.5 L 720 323.44 L 80 323.44 L 80 662.5 Z M 23.5 724.3 C 7.833 707.16 0 686.56 0 662.5 L 0 137.5 C 0 113.44 7.833 92.84 23.5 75.7 C 39.167 58.57 58 50 80 50 L 720 50 C 742 50 760.833 58.57 776.5 75.7 C 792.167 92.84 800 113.44 800 137.5 L 800 662.5 C 800 686.56 792.167 707.16 776.5 724.3 C 760.833 741.43 742 750 720 750 L 80 750 C 58 750 39.167 741.43 23.5 724.3 Z M 435 130 C 404.624 130 380 154.624 380 185 C 380 215.376 404.624 240 435 240 C 465.376 240 490 215.376 490 185 C 490 154.624 465.376 130 435 130 Z M 285 130 C 254.624 130 230 154.624 230 185 C 230 215.376 254.624 240 285 240 C 315.376 240 340 215.376 340 185 C 340 154.624 315.376 130 285 130 Z M 135 130 C 104.624 130 80 154.624 80 185 C 80 215.376 104.624 240 135 240 C 165.376 240 190 215.376 190 185 C 190 154.624 165.376 130 135 130 Z"/>
+</svg>
\ No newline at end of file
diff --git a/docs/overrides/.icons/easydiffraction.svg b/docs/overrides/.icons/easydiffraction.svg
new file mode 100644
index 00000000..5813e570
--- /dev/null
+++ b/docs/overrides/.icons/easydiffraction.svg
@@ -0,0 +1,3 @@
+<svg viewBox="0 0 660 660" xmlns="http://www.w3.org/2000/svg">
+  <path d="M660 330c0 182.25-147.75 330-330 330S0 512.25 0 330 147.75 0 330 0s330 147.75 330 330zm-329.4-84.48a85 85 0 100 170 85 85 0 000-170zm-39.27-181.1a67.5 67.5 0 100 135 67.5 67.5 0 000-135zm76.44 396.16a67.5 67.5 0 100 135 67.5 67.5 0 000-135zM139.5 211.34a52.5 52.5 0 100 105 52.5 52.5 0 000-105zm342.33-66.49a52.5 52.5 0 100 105 52.5 52.5 0 000-105zm38.67 198.41a52.5 52.5 0 100 105 52.5 52.5 0 000-105zm-342.64 66.55a52.5 52.5 0 100 105 52.5 52.5 0 000-105z"/>
+</svg>
diff --git a/docs/overrides/.icons/easyscience.svg b/docs/overrides/.icons/easyscience.svg
new file mode 100644
index 00000000..fb514912
--- /dev/null
+++ b/docs/overrides/.icons/easyscience.svg
@@ -0,0 +1,20 @@
+<?xml version="1.0" encoding="utf-8"?>
+<svg viewBox="0 0 512 512" xmlns="http://www.w3.org/2000/svg" xmlns:bx="https://boxy-svg.com" width="512px" height="512px">
+  <defs>
+    <bx:grid x="0" y="0" width="190" height="80"/>
+    <bx:export>
+      <bx:file format="png" href="#object-0"/>
+    </bx:export>
+  </defs>
+  <g transform="matrix(2.462243, 0, 0, 2.462243, 17.858936, 23.602793)" id="object-0">
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+  </g>
+</svg>
\ No newline at end of file
diff --git a/docs/overrides/.icons/google-colab.svg b/docs/overrides/.icons/google-colab.svg
new file mode 100644
index 00000000..9cd9d1b0
--- /dev/null
+++ b/docs/overrides/.icons/google-colab.svg
@@ -0,0 +1,7 @@
+<svg role="img" viewBox="0 0 24 24" xmlns="http://www.w3.org/2000/svg">
+  <path d="M4.54,9.46,2.19,7.1a6.93,6.93,0,0,0,0,9.79l2.36-2.36A3.59,3.59,0,0,1,4.54,9.46Z" style="" fill="#E8710A"></path>
+  <path d="M2.19,7.1,4.54,9.46a3.59,3.59,0,0,1,5.08,0l1.71-2.93h0l-.1-.08h0A6.93,6.93,0,0,0,2.19,7.1Z" style="" fill="#F9AB00"></path>
+  <path d="M11.34,17.46h0L9.62,14.54a3.59,3.59,0,0,1-5.08,0L2.19,16.9a6.93,6.93,0,0,0,9,.65l.11-.09" style="" fill="#F9AB00"></path>
+  <path d="M12,7.1a6.93,6.93,0,0,0,0,9.79l2.36-2.36a3.59,3.59,0,1,1,5.08-5.08L21.81,7.1A6.93,6.93,0,0,0,12,7.1Z" style="" fill="#F9AB00"></path>
+  <path d="M21.81,7.1,19.46,9.46a3.59,3.59,0,0,1-5.08,5.08L12,16.9A6.93,6.93,0,0,0,21.81,7.1Z" style="" fill="#E8710A"></path>
+</svg>
diff --git a/docs/overrides/main.html b/docs/overrides/main.html
new file mode 100644
index 00000000..2e146827
--- /dev/null
+++ b/docs/overrides/main.html
@@ -0,0 +1,39 @@
+{% extends "base.html" %}
+
+{% block content %}
+
+{% if page.nb_url %}
+  {# Parse notebook path/URL #}
+  {% set parts = page.nb_url.split('/') %}
+  {% set tutorial_name = parts[-2] %}
+  {% set filename = parts[-1] %}
+
+  {# Colab url #}
+  {% set base_colab_url = "https://colab.research.google.com/github/" %}
+  {% set colab_url =
+    base_colab_url ~ config.extra.vars.github_repository ~
+    "/blob/gh-pages/" ~ config.extra.vars.docs_version ~
+    "/tutorials/" ~ tutorial_name ~ "/" ~ filename
+  %}
+
+  {# Download link: relative to the current page #}
+  {% set file_url = filename %}
+
+  {# Open in Colab (absolute GitHub URL; works anywhere) #}
+  <a href="{{ colab_url }}"
+     title="Open in Google Colab"
+     class="md-content__button md-icon">
+    {% include ".icons/google-colab.svg" %}
+  </a>
+
+  {# Download: use a RELATIVE link to the file next to this page #}
+  <a href="{{ file_url }}"
+     download="{{ file_url }}"
+     title="Download Notebook"
+     class="md-content__button md-icon">
+    {% include ".icons/material/download.svg" %}
+  </a>
+{% endif %}
+
+{{ super() }}
+{% endblock content %}
diff --git a/docs/overrides/partials/logo.html b/docs/overrides/partials/logo.html
new file mode 100644
index 00000000..78fa69ca
--- /dev/null
+++ b/docs/overrides/partials/logo.html
@@ -0,0 +1,15 @@
+{% if ( config.theme.logo_light_mode and config.theme.logo_dark_mode ) %}
+<img
+  id="logo_light_mode"
+  src="{{ config.theme.logo_light_mode | url }}"
+  alt="logo"
+/>
+<img
+  id="logo_dark_mode"
+  src="{{ config.theme.logo_dark_mode | url }}"
+  alt="logo"
+/>
+{% elif config.theme.logo %}
+<img src="{{ config.theme.logo | url }}" alt="logo" />
+{% else %} {% set icon = config.theme.icon.logo or "material/library" %} {%
+include ".icons/" ~ icon ~ ".svg" %} {% endif %}
diff --git a/docs/tutorials/index.md b/docs/tutorials/index.md
deleted file mode 100644
index a7c2cc37..00000000
--- a/docs/tutorials/index.md
+++ /dev/null
@@ -1,90 +0,0 @@
----
-icon: material/school
----
-
-# :material-school: Tutorials
-
-This section presents a collection of **Jupyter Notebook** tutorials that
-demonstrate how to use EasyDiffraction for various tasks. These tutorials serve
-as self-contained, step-by-step **guides** to help users grasp the workflow of
-diffraction data analysis using EasyDiffraction.
-
-Instructions on how to run the tutorials are provided in the
-[:material-cog-box: Installation & Setup](../installation-and-setup/index.md#how-to-run-tutorials)
-section of the documentation.
-
-The tutorials are organized into the following categories.
-
-## Getting Started
-
-- [LBCO `quick` CIF](ed-1.ipynb) – A minimal example intended as a quick
-  reference for users already familiar with the EasyDiffraction API or who want
-  to see how Rietveld refinement of the La0.5Ba0.5CoO3 crystal structure can be
-  performed when both the structure and experiment are loaded from CIF files.
-  Data collected from constant wavelength neutron powder diffraction at HRPT at
-  PSI.
-- [LBCO `quick` `code`](ed-2.ipynb) – A minimal example intended as a quick
-  reference for users already familiar with the EasyDiffraction API or who want
-  to see an example refinement when both the structure and experiment are
-  defined directly in code. This tutorial covers a Rietveld refinement of the
-  La0.5Ba0.5CoO3 crystal structure using constant wavelength neutron powder
-  diffraction data from HRPT at PSI.
-- [LBCO `complete`](ed-3.ipynb) – Demonstrates the use of the EasyDiffraction
-  API in a simplified, user-friendly manner that closely follows the GUI
-  workflow for a Rietveld refinement of the La0.5Ba0.5CoO3 crystal structure
-  using constant wavelength neutron powder diffraction data from HRPT at PSI.
-  This tutorial provides a full explanation of the workflow with detailed
-  comments and descriptions of every step, making it suitable for users who are
-  new to EasyDiffraction or those who prefer a more guided approach.
-
-## Powder Diffraction
-
-- [Co2SiO4 `pd-neut-cwl`](ed-5.ipynb) – Demonstrates a Rietveld refinement of
-  the Co2SiO4 crystal structure using constant wavelength neutron powder
-  diffraction data from D20 at ILL.
-- [HS `pd-neut-cwl`](ed-6.ipynb) – Demonstrates a Rietveld refinement of the HS
-  crystal structure using constant wavelength neutron powder diffraction data
-  from HRPT at PSI.
-- [Si `pd-neut-tof`](ed-7.ipynb) – Demonstrates a Rietveld refinement of the Si
-  crystal structure using time-of-flight neutron powder diffraction data from
-  SEPD at Argonne.
-- [NCAF `pd-neut-tof`](ed-8.ipynb) – Demonstrates a Rietveld refinement of the
-  Na2Ca3Al2F14 crystal structure using two time-of-flight neutron powder
-  diffraction datasets (from two detector banks) of the WISH instrument at ISIS.
-
-## Single Crystal Diffraction
-
-- [Tb2TiO7 `sg-neut-cwl`](ed-14.ipynb) – Demonstrates structure refinement of
-  Tb2TiO7 using constant wavelength neutron single crystal diffraction data from
-  HEiDi at FRM II.
-- [Taurine `sg-neut-tof`](ed-15.ipynb) – Demonstrates structure refinement of
-  Taurine using time-of-flight neutron single crystal diffraction data from
-  SENJU at J-PARC.
-
-## Pair Distribution Function (PDF)
-
-- [Ni `pd-neut-cwl`](ed-10.ipynb) – Demonstrates a PDF analysis of Ni using data
-  collected from a constant wavelength neutron powder diffraction experiment.
-- [Si `pd-neut-tof`](ed-11.ipynb) – Demonstrates a PDF analysis of Si using data
-  collected from a time-of-flight neutron powder diffraction experiment at NOMAD
-  at SNS.
-- [NaCl `pd-xray`](ed-12.ipynb) – Demonstrates a PDF analysis of NaCl using data
-  collected from an X-ray powder diffraction experiment.
-
-## Multi-Structure & Multi-Experiment Refinement
-
-- [PbSO4 NPD+XRD](ed-4.ipynb) – Joint fit of PbSO4 using X-ray and neutron
-  constant wavelength powder diffraction data.
-- [LBCO+Si McStas](ed-9.ipynb) – Multi-phase Rietveld refinement of
-  La0.5Ba0.5CoO3 with Si impurity using time-of-flight neutron data simulated
-  with McStas.
-- [Si Bragg+PDF](ed-16.ipynb) – Joint refinement of Si combining Bragg
-  diffraction (SEPD) and pair distribution function (NOMAD) analysis. A single
-  shared structure is refined simultaneously against both datasets.
-
-## Workshops & Schools
-
-- [DMSC Summer School](ed-13.ipynb) – A workshop tutorial that demonstrates a
-  Rietveld refinement of the La0.5Ba0.5CoO3 crystal structure using
-  time-of-flight neutron powder diffraction data simulated with McStas. This
-  tutorial is designed for the ESS DMSC Summer School.
diff --git a/docs/user-guide/analysis-workflow/index.md b/docs/user-guide/analysis-workflow/index.md
deleted file mode 100644
index 51c1f623..00000000
--- a/docs/user-guide/analysis-workflow/index.md
+++ /dev/null
@@ -1,34 +0,0 @@
-# Analysis Workflow
-
-To streamline the **data analysis process**, EasyDiffraction follows a
-structured workflow divided into **five key steps**:
-
-```mermaid
-flowchart LR
-    a(Project)
-    b(Model)
-    c(Experiment)
-    d(Analysis)
-    e(Summary)
-    a --> b
-    b --> c
-    c --> d
-    d --> e
-```
-
-- [:material-archive: Project](project.md) – Establish a **project** as a
-  container for structure and experiment parameters, measured and calculated
-  data, analysis settings and results.
-- [:material-puzzle: Structure](model.md) – Load an existing **crystallographic
-  model** in CIF format or define a new one from scratch.
-- [:material-microscope: Experiment](experiment.md) – Import **experimental
-  diffraction data** and configure **instrumental** and other relevant
-  parameters.
-- [:material-calculator: Analysis](analysis.md) – **Calculate the diffraction
-  pattern** and **optimize the structural model** by refining its parameters to
-  match experimental measurements.
-- [:material-clipboard-text: Summary](summary.md) – Generate a **report**
-  summarizing the results of the analysis, including refined parameters.
-
-Each step is described in detail in its respective section, guiding users
-through the **entire diffraction data analysis workflow** in EasyDiffraction.
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-  - liblapack  3.11.0   5*_openblas
-  - libcblas   3.11.0   5*_openblas
-  - blas 2.305   openblas
-  - liblapacke 3.11.0   5*_openblas
   license: BSD-3-Clause
-  license_family: BSD
   purls: []
-  size: 18213
-  timestamp: 1765818813880
-- conda: https://conda.anaconda.org/conda-forge/osx-64/libblas-3.11.0-5_he492b99_openblas.conda
-  build_number: 5
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-  md5: 36d2e68a156692cbae776b75d6ca6eae
+  size: 18621
+  timestamp: 1774503034895
+- conda: https://conda.anaconda.org/conda-forge/osx-64/libblas-3.11.0-6_he492b99_openblas.conda
+  build_number: 6
+  sha256: 6865098475f3804208038d0c424edf926f4dc9eacaa568d14e29f59df53731fd
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-  - libopenblas >=0.3.30,<1.0a0
+  - libopenblas >=0.3.32,<0.3.33.0a0
+  - libopenblas >=0.3.32,<1.0a0
   constrains:
-  - liblapack  3.11.0   5*_openblas
-  - blas 2.305   openblas
-  - libcblas   3.11.0   5*_openblas
+  - libcblas   3.11.0   6*_openblas
+  - blas 2.306   openblas
   - mkl <2026
-  - liblapacke 3.11.0   5*_openblas
+  - liblapacke 3.11.0   6*_openblas
+  - liblapack  3.11.0   6*_openblas
   license: BSD-3-Clause
-  license_family: BSD
   purls: []
-  size: 18476
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-- conda: https://conda.anaconda.org/conda-forge/osx-arm64/libblas-3.11.0-5_h51639a9_openblas.conda
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-  md5: bcc025e2bbaf8a92982d20863fe1fb69
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+- conda: https://conda.anaconda.org/conda-forge/osx-arm64/libblas-3.11.0-6_h51639a9_openblas.conda
+  build_number: 6
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-  - libopenblas >=0.3.30,<1.0a0
+  - libopenblas >=0.3.32,<0.3.33.0a0
+  - libopenblas >=0.3.32,<1.0a0
   constrains:
-  - libcblas   3.11.0   5*_openblas
-  - liblapack  3.11.0   5*_openblas
-  - liblapacke 3.11.0   5*_openblas
-  - blas 2.305   openblas
+  - liblapacke 3.11.0   6*_openblas
+  - liblapack  3.11.0   6*_openblas
+  - blas 2.306   openblas
+  - libcblas   3.11.0   6*_openblas
   - mkl <2026
   license: BSD-3-Clause
-  license_family: BSD
   purls: []
-  size: 18546
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-- conda: https://conda.anaconda.org/conda-forge/win-64/libblas-3.11.0-5_hf2e6a31_mkl.conda
-  build_number: 5
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-  md5: f9decf88743af85c9c9e05556a4c47c0
+  size: 18859
+  timestamp: 1774504387211
+- conda: https://conda.anaconda.org/conda-forge/win-64/libblas-3.11.0-6_hf2e6a31_mkl.conda
+  build_number: 6
+  sha256: 10c8054f007adca8c780cd8bb9335fa5d990f0494b825158d3157983a25b1ea2
+  md5: 95543eec964b4a4a7ca3c4c9be481aa1
   depends:
-  - mkl >=2025.3.0,<2026.0a0
+  - mkl >=2025.3.1,<2026.0a0
   constrains:
-  - liblapack  3.11.0   5*_mkl
-  - libcblas   3.11.0   5*_mkl
-  - blas 2.305   mkl
-  - liblapacke 3.11.0   5*_mkl
+  - blas 2.306   mkl
+  - liblapacke 3.11.0   6*_mkl
+  - liblapack  3.11.0   6*_mkl
+  - libcblas   3.11.0   6*_mkl
   license: BSD-3-Clause
-  license_family: BSD
   purls: []
-  size: 67438
-  timestamp: 1765819100043
+  size: 68082
+  timestamp: 1774503684284
 - conda: https://conda.anaconda.org/conda-forge/linux-64/libbrotlicommon-1.2.0-hb03c661_1.conda
   sha256: 318f36bd49ca8ad85e6478bd8506c88d82454cc008c1ac1c6bf00a3c42fa610e
   md5: 72c8fd1af66bd67bf580645b426513ed
@@ -6585,86 +6810,82 @@ packages:
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-- conda: https://conda.anaconda.org/conda-forge/linux-64/libcblas-3.11.0-5_h0358290_openblas.conda
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-  md5: 6636a2b6f1a87572df2970d3ebc87cc0
+- conda: https://conda.anaconda.org/conda-forge/linux-64/libcblas-3.11.0-6_h0358290_openblas.conda
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+  md5: 36ae340a916635b97ac8a0655ace2a35
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-  - libblas 3.11.0 5_h4a7cf45_openblas
+  - libblas 3.11.0 6_h4a7cf45_openblas
   constrains:
-  - liblapacke 3.11.0   5*_openblas
-  - blas 2.305   openblas
-  - liblapack  3.11.0   5*_openblas
+  - blas 2.306   openblas
+  - liblapack  3.11.0   6*_openblas
+  - liblapacke 3.11.0   6*_openblas
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-  license_family: BSD
   purls: []
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-  timestamp: 1765818837135
-- conda: https://conda.anaconda.org/conda-forge/osx-64/libcblas-3.11.0-5_h9b27e0a_openblas.conda
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-  md5: b31d771cbccff686e01a687708a7ca41
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+- conda: https://conda.anaconda.org/conda-forge/osx-64/libcblas-3.11.0-6_h9b27e0a_openblas.conda
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+  md5: 2a174868cb9e136c4e92b3ffc2815f04
   depends:
-  - libblas 3.11.0 5_he492b99_openblas
+  - libblas 3.11.0 6_he492b99_openblas
   constrains:
-  - liblapack  3.11.0   5*_openblas
-  - blas 2.305   openblas
-  - liblapacke 3.11.0   5*_openblas
+  - liblapacke 3.11.0   6*_openblas
+  - blas 2.306   openblas
+  - liblapack  3.11.0   6*_openblas
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-  license_family: BSD
   purls: []
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-- conda: https://conda.anaconda.org/conda-forge/osx-arm64/libcblas-3.11.0-5_hb0561ab_openblas.conda
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-  md5: efd8bd15ca56e9d01748a3beab8404eb
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+- conda: https://conda.anaconda.org/conda-forge/osx-arm64/libcblas-3.11.0-6_hb0561ab_openblas.conda
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+  - libblas 3.11.0 6_h51639a9_openblas
   constrains:
-  - liblapacke 3.11.0   5*_openblas
-  - liblapack  3.11.0   5*_openblas
-  - blas 2.305   openblas
+  - liblapacke 3.11.0   6*_openblas
+  - blas 2.306   openblas
+  - liblapack  3.11.0   6*_openblas
   license: BSD-3-Clause
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   purls: []
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-- conda: https://conda.anaconda.org/conda-forge/win-64/libcblas-3.11.0-5_h2a3cdd5_mkl.conda
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-  md5: b3fa8e8b55310ba8ef0060103afb02b5
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+- conda: https://conda.anaconda.org/conda-forge/win-64/libcblas-3.11.0-6_h2a3cdd5_mkl.conda
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   depends:
-  - libblas 3.11.0 5_hf2e6a31_mkl
+  - libblas 3.11.0 6_hf2e6a31_mkl
   constrains:
-  - liblapack  3.11.0   5*_mkl
-  - liblapacke 3.11.0   5*_mkl
-  - blas 2.305   mkl
+  - blas 2.306   mkl
+  - liblapacke 3.11.0   6*_mkl
+  - liblapack  3.11.0   6*_mkl
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+- conda: https://conda.anaconda.org/conda-forge/osx-64/libcxx-22.1.2-h19cb2f5_0.conda
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+  md5: ed6f7b7a35f942a0301e581d72616f7d
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   license: Apache-2.0 WITH LLVM-exception
   license_family: Apache
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-- conda: https://conda.anaconda.org/conda-forge/osx-arm64/libcxx-22.1.0-h55c6f16_1.conda
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+- conda: https://conda.anaconda.org/conda-forge/osx-arm64/libcxx-22.1.2-h55c6f16_0.conda
+  sha256: d1402087c8792461bfc081629e8aa97e6e577a31ae0b84e6b9cc144a18f48067
+  md5: 4280e0a7fd613b271e022e60dea0138c
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   license: Apache-2.0 WITH LLVM-exception
   license_family: Apache
   purls: []
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-  timestamp: 1772001095642
+  size: 568094
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 - conda: https://conda.anaconda.org/conda-forge/linux-64/libev-4.33-hd590300_2.conda
   sha256: 1cd6048169fa0395af74ed5d8f1716e22c19a81a8a36f934c110ca3ad4dd27b4
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-- conda: https://conda.anaconda.org/conda-forge/linux-64/libnghttp2-1.67.0-had1ee68_0.conda
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-  md5: b499ce4b026493a13774bcf0f4c33849
+- conda: https://conda.anaconda.org/conda-forge/linux-64/libnghttp2-1.68.1-h877daf1_0.conda
+  sha256: 663444d77a42f2265f54fb8b48c5450bfff4388d9c0f8253dd7855f0d993153f
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   - libev >=4.33,<5.0a0
   - libgcc >=14
   - libstdcxx >=14
   - libzlib >=1.3.1,<2.0a0
-  - openssl >=3.5.2,<4.0a0
+  - openssl >=3.5.5,<4.0a0
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-- conda: https://conda.anaconda.org/conda-forge/osx-64/libnghttp2-1.67.0-h3338091_0.conda
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+- conda: https://conda.anaconda.org/conda-forge/osx-64/libnghttp2-1.68.1-h70048d4_0.conda
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   - libev >=4.33,<5.0a0
   - libzlib >=1.3.1,<2.0a0
-  - openssl >=3.5.2,<4.0a0
+  - openssl >=3.5.5,<4.0a0
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-- conda: https://conda.anaconda.org/conda-forge/osx-arm64/libnghttp2-1.67.0-hc438710_0.conda
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+- conda: https://conda.anaconda.org/conda-forge/osx-arm64/libnghttp2-1.68.1-h8f3e76b_0.conda
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   - libev >=4.33,<5.0a0
   - libzlib >=1.3.1,<2.0a0
-  - openssl >=3.5.2,<4.0a0
+  - openssl >=3.5.5,<4.0a0
   license: MIT
   license_family: MIT
   purls: []
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-  timestamp: 1756835746393
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 - conda: https://conda.anaconda.org/conda-forge/linux-64/libnsl-2.0.1-hb9d3cd8_1.conda
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-- conda: https://conda.anaconda.org/conda-forge/linux-64/libopenblas-0.3.30-pthreads_h94d23a6_4.conda
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+- conda: https://conda.anaconda.org/conda-forge/linux-64/libopenblas-0.3.32-pthreads_h94d23a6_0.conda
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   - libgcc >=14
   - libgfortran
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   constrains:
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+  - openblas >=0.3.32,<0.3.33.0a0
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-  license_family: BSD
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-- conda: https://conda.anaconda.org/conda-forge/osx-64/libopenblas-0.3.30-openmp_h6006d49_4.conda
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+- conda: https://conda.anaconda.org/conda-forge/osx-64/libopenblas-0.3.32-openmp_h9e49c7b_0.conda
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+  - __osx >=11.0
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   constrains:
-  - openblas >=0.3.30,<0.3.31.0a0
+  - openblas >=0.3.32,<0.3.33.0a0
   license: BSD-3-Clause
-  license_family: BSD
   purls: []
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-- conda: https://conda.anaconda.org/conda-forge/osx-arm64/libopenblas-0.3.30-openmp_ha158390_4.conda
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+- conda: https://conda.anaconda.org/conda-forge/osx-arm64/libopenblas-0.3.32-openmp_he657e61_0.conda
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+  md5: 3a1111a4b6626abebe8b978bb5a323bf
   depends:
   - __osx >=11.0
   - libgfortran
   - libgfortran5 >=14.3.0
   - llvm-openmp >=19.1.7
   constrains:
-  - openblas >=0.3.30,<0.3.31.0a0
+  - openblas >=0.3.32,<0.3.33.0a0
   license: BSD-3-Clause
-  license_family: BSD
   purls: []
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-  timestamp: 1768547079205
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 - conda: https://conda.anaconda.org/conda-forge/linux-64/libsqlite-3.52.0-hf4e2dac_0.conda
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-- conda: https://conda.anaconda.org/conda-forge/linux-64/libzlib-1.3.1-hb9d3cd8_2.conda
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-  md5: edb0dca6bc32e4f4789199455a1dbeb8
+- conda: https://conda.anaconda.org/conda-forge/linux-64/libzlib-1.3.2-h25fd6f3_2.conda
+  sha256: 55044c403570f0dc26e6364de4dc5368e5f3fc7ff103e867c487e2b5ab2bcda9
+  md5: d87ff7921124eccd67248aa483c23fec
   depends:
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-  - libgcc >=13
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+  sha256: 73bcb1ed087824b55ccaa497d03d8f0f0b0eaf30e5f0f7d5bbd29d2c4fe78fcf
+  requires_dist:
+  - chardet>=5.2.0
+  - requests>=2.32.3
+  - black>=23.0.0 ; extra == 'dev'
+  - build>=0.10.0 ; extra == 'dev'
+  - hatch>=1.9.0 ; extra == 'dev'
+  - isort>=5.12.0 ; extra == 'dev'
+  - mypy>=1.0.0 ; extra == 'dev'
+  - pre-commit>=4.3.0 ; extra == 'dev'
+  - pytest-cov>=4.0.0 ; extra == 'dev'
+  - pytest>=7.0.0 ; extra == 'dev'
+  - ruff>=0.5.0 ; extra == 'dev'
+  - twine>=4.0.0 ; extra == 'dev'
+  - types-requests>=2.31.0.6 ; extra == 'dev'
+  - pytest-cov>=4.0.0 ; extra == 'test'
+  - pytest-mock>=3.10.0 ; extra == 'test'
+  - pytest>=7.0.0 ; extra == 'test'
+  requires_python: '>=3.9'
 - pypi: https://files.pythonhosted.org/packages/16/56/a31e8d3c9e8d21100b83bbe1c1f3f7c94db317393a229e193461e5e6d2a4/spglib-2.6.0-cp313-cp313-win_amd64.whl
   name: spglib
   version: 2.6.0
@@ -12091,10 +12365,10 @@ packages:
   purls: []
   size: 3526350
   timestamp: 1769460339384
-- pypi: https://files.pythonhosted.org/packages/7c/b9/ac773f87400bce0637b5f87bb272d0b347c91d7063bff09fb7055b65dd2f/tof-26.1.0-py3-none-any.whl
+- pypi: https://files.pythonhosted.org/packages/f5/57/2a154a69d6642860300bf8eb205d13131104991f2b1065bbb9075ac5c32e/tof-26.3.0-py3-none-any.whl
   name: tof
-  version: 26.1.0
-  sha256: 2603a7b94a7296ee503a0edadb314701431808c8ededb5c442334f89633962a5
+  version: 26.3.0
+  sha256: e89783a072b05fdb53d9e76fbf919dc8935e75e118fdaf17ca5cc33727ef002b
   requires_dist:
   - plopp>=23.10.0
   - pooch>=1.5.0
@@ -12108,70 +12382,70 @@ packages:
   version: 6.2.0
   sha256: a152bf4f249c847a66497a4a95f63376ed68ac6abf092a2f7cfb29d044ecff44
   requires_python: '>=3.9'
-- pypi: https://files.pythonhosted.org/packages/1e/0d/a22bb6c83f83386b0008425a6cd1fa1c14b5f3dd4bad05e98cf3dbbf4a64/tomli-2.4.0-cp311-cp311-win_amd64.whl
+- pypi: https://files.pythonhosted.org/packages/07/06/b823a7e818c756d9a7123ba2cda7d07bc2dd32835648d1a7b7b7a05d848d/tomli-2.4.1-cp313-cp313-macosx_10_13_x86_64.whl
   name: tomli
-  version: 2.4.0
-  sha256: d3d1654e11d724760cdb37a3d7691f0be9db5fbdaef59c9f532aabf87006dbaa
+  version: 2.4.1
+  sha256: 36d2bd2ad5fb9eaddba5226aa02c8ec3fa4f192631e347b3ed28186d43be6b54
   requires_python: '>=3.8'
-- pypi: https://files.pythonhosted.org/packages/20/aa/64dd73a5a849c2e8f216b755599c511badde80e91e9bc2271baa7b2cdbb1/tomli-2.4.0-cp313-cp313-macosx_11_0_arm64.whl
+- pypi: https://files.pythonhosted.org/packages/10/8f/d3ddb16c5a4befdf31a23307f72828686ab2096f068eaf56631e136c1fdd/tomli-2.4.1-cp313-cp313-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl
   name: tomli
-  version: 2.4.0
-  sha256: 9a08144fa4cba33db5255f9b74f0b89888622109bd2776148f2597447f92a94e
+  version: 2.4.1
+  sha256: f3c6818a1a86dd6dca7ddcaaf76947d5ba31aecc28cb1b67009a5877c9a64f3f
   requires_python: '>=3.8'
-- pypi: https://files.pythonhosted.org/packages/34/91/7f65f9809f2936e1f4ce6268ae1903074563603b2a2bd969ebbda802744f/tomli-2.4.0-cp313-cp313-macosx_10_13_x86_64.whl
+- pypi: https://files.pythonhosted.org/packages/14/6f/12645cf7f08e1a20c7eb8c297c6f11d31c1b50f316a7e7e1e1de6e2e7b7e/tomli-2.4.1-cp313-cp313-macosx_11_0_arm64.whl
   name: tomli
-  version: 2.4.0
-  sha256: 84d081fbc252d1b6a982e1870660e7330fb8f90f676f6e78b052ad4e64714bf0
+  version: 2.4.1
+  sha256: eb0dc4e38e6a1fd579e5d50369aa2e10acfc9cace504579b2faabb478e76941a
   requires_python: '>=3.8'
-- pypi: https://files.pythonhosted.org/packages/3b/af/ca18c134b5d75de7e8dc551c5234eaba2e8e951f6b30139599b53de9c187/tomli-2.4.0-cp313-cp313-win_amd64.whl
+- pypi: https://files.pythonhosted.org/packages/42/59/71461df1a885647e10b6bb7802d0b8e66480c61f3f43079e0dcd315b3954/tomli-2.4.1-cp311-cp311-win_amd64.whl
   name: tomli
-  version: 2.4.0
-  sha256: 3cf226acb51d8f1c394c1b310e0e0e61fecdd7adcb78d01e294ac297dd2e7f87
+  version: 2.4.1
+  sha256: 5ee18d9ebdb417e384b58fe414e8d6af9f4e7a0ae761519fb50f721de398dd4e
   requires_python: '>=3.8'
-- pypi: https://files.pythonhosted.org/packages/3c/d9/3dc2289e1f3b32eb19b9785b6a006b28ee99acb37d1d47f78d4c10e28bf8/tomli-2.4.0-cp311-cp311-macosx_10_9_x86_64.whl
+- pypi: https://files.pythonhosted.org/packages/48/c1/f41d9cb618acccca7df82aaf682f9b49013c9397212cb9f53219e3abac37/tomli-2.4.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl
   name: tomli
-  version: 2.4.0
-  sha256: b5ef256a3fd497d4973c11bf142e9ed78b150d36f5773f1ca6088c230ffc5867
+  version: 2.4.1
+  sha256: 5a881ab208c0baf688221f8cecc5401bd291d67e38a1ac884d6736cbcd8247e9
   requires_python: '>=3.8'
-- pypi: https://files.pythonhosted.org/packages/51/32/ef9f6845e6b9ca392cd3f64f9ec185cc6f09f0a2df3db08cbe8809d1d435/tomli-2.4.0-cp311-cp311-macosx_11_0_arm64.whl
+- pypi: https://files.pythonhosted.org/packages/6a/1e/71dfd96bcc1c775420cb8befe7a9d35f2e5b1309798f009dca17b7708c1e/tomli-2.4.1-cp313-cp313-win_amd64.whl
   name: tomli
-  version: 2.4.0
-  sha256: 5572e41282d5268eb09a697c89a7bee84fae66511f87533a6f88bd2f7b652da9
+  version: 2.4.1
+  sha256: 8d65a2fbf9d2f8352685bc1364177ee3923d6baf5e7f43ea4959d7d8bc326a36
   requires_python: '>=3.8'
-- pypi: https://files.pythonhosted.org/packages/59/bb/8002fadefb64ab2669e5b977df3f5e444febea60e717e755b38bb7c41029/tomli-2.4.0-cp313-cp313-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl
+- pypi: https://files.pythonhosted.org/packages/6d/f7/675db52c7e46064a9aa928885a9b20f4124ecb9bc2e1ce74c9106648d202/tomli-2.4.1-cp311-cp311-macosx_11_0_arm64.whl
   name: tomli
-  version: 2.4.0
-  sha256: 1fb2945cbe303b1419e2706e711b7113da57b7db31ee378d08712d678a34e51e
+  version: 2.4.1
+  sha256: 4ab97e64ccda8756376892c53a72bd1f964e519c77236368527f758fbc36a53a
   requires_python: '>=3.8'
-- pypi: https://files.pythonhosted.org/packages/b3/40/e1b65986dbc861b7e986e8ec394598187fa8aee85b1650b01dd925ca0be8/tomli-2.4.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl
+- pypi: https://files.pythonhosted.org/packages/f4/11/db3d5885d8528263d8adc260bb2d28ebf1270b96e98f0e0268d32b8d9900/tomli-2.4.1-cp311-cp311-macosx_10_9_x86_64.whl
   name: tomli
-  version: 2.4.0
-  sha256: 5e3f639a7a8f10069d0e15408c0b96a2a828cfdec6fca05296ebcdcc28ca7c76
+  version: 2.4.1
+  sha256: f8f0fc26ec2cc2b965b7a3b87cd19c5c6b8c5e5f436b984e85f486d652285c30
   requires_python: '>=3.8'
 - pypi: https://files.pythonhosted.org/packages/fb/12/5911ae3eeec47800503a238d971e51722ccea5feb8569b735184d5fcdbc0/toolz-1.1.0-py3-none-any.whl
   name: toolz
   version: 1.1.0
   sha256: 15ccc861ac51c53696de0a5d6d4607f99c210739caf987b5d2054f3efed429d8
   requires_python: '>=3.9'
-- pypi: https://files.pythonhosted.org/packages/50/d4/e51d52047e7eb9a582da59f32125d17c0482d065afd5d3bc435ff2120dc5/tornado-6.5.4-cp39-abi3-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl
+- pypi: https://files.pythonhosted.org/packages/2c/23/f6c6112a04d28eed765e374435fb1a9198f73e1ec4b4024184f21faeb1ad/tornado-6.5.5-cp39-abi3-win_amd64.whl
   name: tornado
-  version: 6.5.4
-  sha256: e5fb5e04efa54cf0baabdd10061eb4148e0be137166146fff835745f59ab9f7f
+  version: 6.5.5
+  sha256: 6443a794ba961a9f619b1ae926a2e900ac20c34483eea67be4ed8f1e58d3ef7b
   requires_python: '>=3.9'
-- pypi: https://files.pythonhosted.org/packages/ab/a9/e94a9d5224107d7ce3cc1fab8d5dc97f5ea351ccc6322ee4fb661da94e35/tornado-6.5.4-cp39-abi3-macosx_10_9_universal2.whl
+- pypi: https://files.pythonhosted.org/packages/59/8c/77f5097695f4dd8255ecbd08b2a1ed8ba8b953d337804dd7080f199e12bf/tornado-6.5.5-cp39-abi3-macosx_10_9_universal2.whl
   name: tornado
-  version: 6.5.4
-  sha256: d6241c1a16b1c9e4cc28148b1cda97dd1c6cb4fb7068ac1bedc610768dff0ba9
+  version: 6.5.5
+  sha256: 487dc9cc380e29f58c7ab88f9e27cdeef04b2140862e5076a66fb6bb68bb1bfa
   requires_python: '>=3.9'
-- pypi: https://files.pythonhosted.org/packages/d6/6d/c69be695a0a64fd37a97db12355a035a6d90f79067a3cf936ec2b1dc38cd/tornado-6.5.4-cp39-abi3-win_amd64.whl
+- pypi: https://files.pythonhosted.org/packages/ab/5e/7625b76cd10f98f1516c36ce0346de62061156352353ef2da44e5c21523c/tornado-6.5.5-cp39-abi3-macosx_10_9_x86_64.whl
   name: tornado
-  version: 6.5.4
-  sha256: fa07d31e0cd85c60713f2b995da613588aa03e1303d75705dca6af8babc18ddc
+  version: 6.5.5
+  sha256: 65a7f1d46d4bb41df1ac99f5fcb685fb25c7e61613742d5108b010975a9a6521
   requires_python: '>=3.9'
-- pypi: https://files.pythonhosted.org/packages/db/7e/f7b8d8c4453f305a51f80dbb49014257bb7d28ccb4bbb8dd328ea995ecad/tornado-6.5.4-cp39-abi3-macosx_10_9_x86_64.whl
+- pypi: https://files.pythonhosted.org/packages/b2/04/7b5705d5b3c0fab088f434f9c83edac1573830ca49ccf29fb83bf7178eec/tornado-6.5.5-cp39-abi3-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl
   name: tornado
-  version: 6.5.4
-  sha256: 2d50f63dda1d2cac3ae1fa23d254e16b5e38153758470e9956cbc3d813d40843
+  version: 6.5.5
+  sha256: e74c92e8e65086b338fd56333fb9a68b9f6f2fe7ad532645a290a464bcf46be5
   requires_python: '>=3.9'
 - pypi: https://files.pythonhosted.org/packages/00/c0/8f5d070730d7836adc9c9b6408dec68c6ced86b304a9b26a14df072a6e8c/traitlets-5.14.3-py3-none-any.whl
   name: traitlets
@@ -12269,10 +12543,6 @@ packages:
   - python-docs-theme ; extra == 'doc'
   - uncertainties[arrays,doc,test] ; extra == 'all'
   requires_python: '>=3.8'
-- pypi: https://files.pythonhosted.org/packages/f7/46/e7cea8159199096e1df52da20a57a6665da80c37fb8aeb848a3e47442c32/untokenize-0.1.1.tar.gz
-  name: untokenize
-  version: 0.1.1
-  sha256: 3865dbbbb8efb4bb5eaa72f1be7f3e0be00ea8b7f125c69cbd1f5fda926f37a2
 - pypi: https://files.pythonhosted.org/packages/e7/00/3fca040d7cf8a32776d3d81a00c8ee7457e00f80c649f1e4a863c8321ae9/uri_template-1.3.0-py3-none-any.whl
   name: uri-template
   version: 1.3.0
@@ -12310,26 +12580,6 @@ packages:
   - pysocks>=1.5.6,!=1.5.7,<2.0 ; extra == 'socks'
   - backports-zstd>=1.0.0 ; python_full_version < '3.14' and extra == 'zstd'
   requires_python: '>=3.9'
-- pypi: https://files.pythonhosted.org/packages/6f/34/2e5cd576d312eb1131b615f49ee95ff6efb740965324843617adae729cf2/uv-0.10.9-py3-none-macosx_10_12_x86_64.whl
-  name: uv
-  version: 0.10.9
-  sha256: 880dd4cffe4bd184e8871ddf4c7d3c3b042e1f16d2682310644aa8d61eaea3e6
-  requires_python: '>=3.8'
-- pypi: https://files.pythonhosted.org/packages/79/34/b104c413079874493eed7bf11838b47b697cf1f0ed7e9de374ea37b4e4e0/uv-0.10.9-py3-none-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
-  name: uv
-  version: 0.10.9
-  sha256: 7c9d6deb30edbc22123be75479f99fb476613eaf38a8034c0e98bba24a344179
-  requires_python: '>=3.8'
-- pypi: https://files.pythonhosted.org/packages/89/35/684f641de4de2b20db7d2163c735b2bb211e3b3c84c241706d6448e5e868/uv-0.10.9-py3-none-macosx_11_0_arm64.whl
-  name: uv
-  version: 0.10.9
-  sha256: a7a784254380552398a6baf4149faf5b31a4003275f685c28421cf8197178a08
-  requires_python: '>=3.8'
-- pypi: https://files.pythonhosted.org/packages/c9/e9/adf7a12136573937d12ac189569e2e90e7fad18b458192083df6986f3013/uv-0.10.9-py3-none-win_amd64.whl
-  name: uv
-  version: 0.10.9
-  sha256: af79552276d8bd622048ab2d67ec22120a6af64d83963c46b1482218c27b571f
-  requires_python: '>=3.8'
 - pypi: https://files.pythonhosted.org/packages/b7/ee/e9c95cda829131f71a8dff5ce0406059fd16e591c074414e31ada19ba7c3/validate_pyproject-0.25-py3-none-any.whl
   name: validate-pyproject
   version: '0.25'
diff --git a/pixi.toml b/pixi.toml
index c0a8608e..2cbf09c5 100644
--- a/pixi.toml
+++ b/pixi.toml
@@ -5,7 +5,7 @@
 # Platform-independent
 
 [activation.env]
-PYTHONIOENCODING = "utf-8"
+PYTHONIOENCODING = 'utf-8'
 
 # Platform-specific
 
@@ -27,6 +27,7 @@ PYTHONPATH = "${PIXI_PROJECT_ROOT}/src;%PYTHONPATH%"
 ###########
 
 [workspace]
+
 # Supported platforms for the lock file (pixi.lock)
 platforms = ['win-64', 'linux-64', 'osx-64', 'osx-arm64']
 
@@ -34,7 +35,7 @@ platforms = ['win-64', 'linux-64', 'osx-64', 'osx-arm64']
 channels = ['conda-forge']
 
 #####################
-# System requirements
+# SYSTEM REQUIREMENTS
 #####################
 
 [system-requirements]
@@ -52,34 +53,20 @@ macos = '14.0'
 # Default feature configuration
 
 [dependencies]
-gsl = '*' # GNU Scientific Library; required for pdffit2.
-
-#[target.win-64.dependencies]
-#libcblas = '*' # CBLAS library for linear algebra; required for pdffit2.
+nodejs = '*' # Required for Prettier (non-Python formatting)
+gsl = '*'    # GNU Scientific Library; required for diffpy.pdffit2
 
 [pypi-dependencies] # == [feature.default.pypi-dependencies]
-pip = '*'         # Native package installer
-uv = '*'          # Package manager
-jupyterlab = '*'  # Jupyter notebooks
-pixi-kernel = '*' # Pixi Jupyter kernel
-#easydiffraction = { version = '*', extras = ['all'] } # Main package
-easydiffraction = { path = ".", editable = true, extras = ['all'] }
-
-# Specific features
+#pip = '*' # Native package installer
+easydiffraction = { path = '.', editable = true, extras = ['dev'] }
 
-# Each feature sets a specific Python version for the environment.
+# Specific features: Set specific Python versions
 
-[feature.py311.dependencies]
+[feature.py-min.dependencies]
 python = '3.11.*'
-
-[feature.py313.dependencies]
+[feature.py-max.dependencies]
 python = '3.13.*'
 
-# This feature installs Node.js for formatting non-Python files with Prettier.
-
-[feature.nodejs.dependencies]
-nodejs = '*'
-
 ##############
 # ENVIRONMENTS
 ##############
@@ -88,13 +75,12 @@ nodejs = '*'
 
 # The `default` feature is always included in all environments.
 # Additional features can be specified per environment.
+py-311-env = { features = ['default', 'py-min'] }
+py-313-env = { features = ['default', 'py-max'] }
 
 # The `default` environment is always created and includes the `default` feature.
 # It does not need to be specified explicitly unless non-default features are included.
-
-default = { features = ['py313', 'nodejs'] }
-py311-dev = { features = ['py311', 'nodejs'] }
-py313-dev = { features = ['py313', 'nodejs'] }
+default = { features = ['default', 'py-max'] }
 
 #######
 # TASKS
@@ -102,59 +88,59 @@ py313-dev = { features = ['py313', 'nodejs'] }
 
 [tasks]
 
-## 🧪 Testing Tasks
+##################
+# 🧪 Testing Tasks
+##################
+
 unit-tests = 'python -m pytest tests/unit/ --color=yes -v'
 integration-tests = 'python -m pytest tests/integration/ --color=yes -n auto -v'
-notebook-tests = 'python -m pytest --nbmake tutorials/ --nbmake-timeout=600 --color=yes -n auto -v'
 script-tests = 'python -m pytest tools/test_scripts.py --color=yes -n auto -v'
-extra = 'python -m pytest tests/unit/extra.py -q --tb=no --disable-warnings --color=yes'
+notebook-tests = 'python -m pytest --nbmake docs/docs/tutorials/ --nbmake-timeout=600 --color=yes -n auto -v'
 
 test = { depends-on = ['unit-tests'] }
 
-# 🧹 Code Quality
+###########
+# ✔️ Checks
+###########
 
-### ✔️ Checks
 pyproject-check = 'python -m validate_pyproject pyproject.toml'
-py-lint-check-pre = "python -m ruff check"
-py-lint-check = 'pixi run py-lint-check-pre .'
-py-format-check-pre = "python -m ruff format --check"
-py-format-check = "pixi run py-format-check-pre ."
-nonpy-format-check-pre = "npx prettier --list-different --config=prettierrc.toml"
-nonpy-format-check-modified = "pixi run nonpy-format-check-pre $(git diff --diff-filter=d --name-only HEAD | grep -E '\\.(json|ya?ml|toml|md|css|html)$' || echo .)"
-nonpy-format-check = "pixi run nonpy-format-check-pre ."
-notebook-format-check = 'nbqa ruff tutorials/'
-docs-format-check = 'docformatter src/ tutorials/ --check'
-# Run like a real commit: staged files only (almost)
-pre-commit-check = 'pre-commit run --hook-stage pre-commit'
-# CI check: lint/format everything
-pre-commit-check-all = 'pre-commit run --all-files --hook-stage pre-commit'
-# Pre-push check: lint/format everything
-pre-push-check = 'pre-commit run --all-files --hook-stage pre-push'
-
-check = { depends-on = [
-  'docs-format-check',
-  'py-format-check',
-  'py-lint-check',
-  'nonpy-format-check-modified',
-] }
+param-docstring-check = 'python tools/param_consistency.py src/ --check'
+docstring-lint-check = 'pydoclint --quiet src/'
+notebook-lint-check = 'nbqa ruff docs/docs/tutorials/'
+py-lint-check = 'ruff check src/ tests/ docs/docs/tutorials/'
+py-format-check = 'ruff format --check src/ tests/ docs/docs/tutorials/'
+nonpy-format-check = 'npx prettier --list-different --config=prettierrc.toml --ignore-unknown .'
+nonpy-format-check-modified = 'python tools/nonpy_prettier_modified.py'
+
+check = 'pre-commit run --hook-stage manual --all-files'
+
+##########
+# 🛠️ Fixes
+##########
 
-### 🛠️ Fixes
-py-lint-fix = 'pixi run py-lint-check --fix'
-#py-format-fix = "python -m ruff format $(git diff --cached --name-only -- '*.py')"
-py-format-fix = "python -m ruff format"
-nonpy-format-fix = 'pixi run nonpy-format-check --write'
-nonpy-format-fix-modified = "pixi run nonpy-format-check-modified --write"
-notebook-format-fix = 'pixi run notebook-format-check --fix'
-docs-format-fix = 'docformatter src/ tutorials/ --in-place'
+param-docstring-fix = 'python tools/param_consistency.py src/ --fix'
+docstring-format-fix = 'format-docstring src/'
+notebook-lint-fix = 'nbqa ruff --fix docs/docs/tutorials/'
+py-lint-fix = 'ruff check --fix src/ tests/ docs/docs/tutorials/'
+py-format-fix = 'ruff format src/ tests/ docs/docs/tutorials/'
+nonpy-format-fix = 'npx prettier --write --list-different --config=prettierrc.toml --ignore-unknown .'
+nonpy-format-fix-modified = 'python tools/nonpy_prettier_modified.py --write'
+success-message = 'echo "✅ All auto-formatting steps completed successfully!"'
 
 fix = { depends-on = [
+  #'param-docstring-fix',  # ED only
+  'docstring-format-fix',
   'py-format-fix',
-  'docs-format-fix',
   'py-lint-fix',
   'nonpy-format-fix',
+  'notebook-lint-fix',
+  'success-message',
 ] }
 
-## 🧮 Code Complexity
+####################
+# 🧮 Code Complexity
+####################
+
 complexity-check = 'radon cc -s src/'
 complexity-check-json = 'radon cc -s -j src/'
 maintainability-check = 'radon mi src/'
@@ -162,62 +148,127 @@ maintainability-check-json = 'radon mi -j src/'
 raw-metrics = 'radon raw -s src/'
 raw-metrics-json = 'radon raw -s -j src/'
 
-## 📊 Coverage
+#############
+# 📊 Coverage
+#############
+
 unit-tests-coverage = 'pixi run unit-tests --cov=src/easydiffraction --cov-report=term-missing'
 integration-tests-coverage = 'pixi run integration-tests --cov=src/easydiffraction --cov-report=term-missing'
-docstring-coverage = 'interrogate -c pyproject.toml src/'
+docstring-coverage = 'interrogate -c pyproject.toml src/easydiffraction'
 
-cov = { depends-on = ['docstring-coverage', 'integration-tests-coverage'] }
+cov = { depends-on = [
+  'docstring-coverage',
+  'unit-tests-coverage',
+  'integration-tests-coverage',
+] }
 
-## 📓 Notebook Management
-notebook-convert = 'jupytext tutorials/*.py --from py:percent --to ipynb'
-notebook-strip = 'nbstripout tutorials/*.ipynb'
+########################
+# 📓 Notebook Management
+########################
+
+notebook-convert = 'jupytext docs/docs/tutorials/*.py --from py:percent --to ipynb'
+notebook-strip = 'nbstripout docs/docs/tutorials/*.ipynb'
 notebook-tweak = 'python tools/tweak_notebooks.py tutorials/'
-notebook-clean = 'rm -f tutorials/*.ipynb'
-notebook-exec = 'python -m pytest --nbmake tutorials/ --nbmake-timeout=600 --overwrite --color=yes -n auto -v'
+notebook-exec = 'python -m pytest --nbmake docs/docs/tutorials/ --nbmake-timeout=600 --overwrite --color=yes -n auto -v'
 
 notebook-prepare = { depends-on = [
-  'notebook-convert',
+  #'notebook-convert',
   'notebook-strip',
-  'notebook-tweak',
+  #'notebook-tweak',
+] }
+
+########################
+# 📚 Documentation Tasks
+########################
+
+docs-vars = "JUPYTER_PLATFORM_DIRS=1 PYTHONWARNINGS='ignore::RuntimeWarning'"
+docs-pre = 'pixi run docs-vars python -m mkdocs'
+docs-serve = 'pixi run docs-pre serve -f docs/mkdocs.yml'
+docs-serve-dirty = 'pixi run docs-serve --dirty'
+docs-build = 'pixi run docs-pre build -f docs/mkdocs.yml'
+docs-build-local = 'pixi run docs-build --no-directory-urls'
+
+docs-deploy-pre = 'mike deploy -F docs/mkdocs.yml --push --branch gh-pages --update-aliases --alias-type redirect'
+docs-set-default-pre = 'mike set-default -F docs/mkdocs.yml --push --branch gh-pages'
+
+docs-update-assets = 'python tools/update_docs_assets.py'
+
+##############################
+# 📦 Template Management Tasks
+##############################
+
+copier-copy = 'copier copy gh:easyscience/templates . --data-file ../diffraction/.copier-answers.yml --data template_type=lib'
+copier-recopy = 'copier recopy --data-file ../diffraction/.copier-answers.yml --data template_type=lib'
+copier-update = 'copier update --data-file ../diffraction/.copier-answers.yml --data template_type=lib'
+
+#####################
+# 🪝 Pre-commit Hooks
+#####################
+
+pre-commit-clean = 'pre-commit clean'
+pre-commit-install = 'pre-commit install --hook-type pre-commit --hook-type pre-push --overwrite'
+pre-commit-uninstall = 'pre-commit uninstall --hook-type pre-commit --hook-type pre-push'
+pre-commit-setup = { depends-on = [
+  'pre-commit-clean',
+  'pre-commit-uninstall',
+  'pre-commit-install',
 ] }
 
-## 📚 Documentation Tasks
-docs-assets = 'tools/add_assets_to_docs.sh'
-docs-notebooks = 'mv tutorials/*.* docs/tutorials/' # *.py, *.ipynb, index.json
-docs-config = 'python tools/create_mkdocs_yml.py'
-docs-deploy = 'mike deploy --push --branch gh-pages --update-aliases --alias-type redirect'
-docs-set-default = 'mike set-default --push --branch gh-pages'
-docs-serve = "JUPYTER_PLATFORM_DIRS=1 PYTHONWARNINGS='ignore::RuntimeWarning' python -m mkdocs serve --dirty"
-docs-build = "JUPYTER_PLATFORM_DIRS=1 PYTHONWARNINGS='ignore::RuntimeWarning' python -m mkdocs build"
-docs-local = "pixi run docs-build --no-directory-urls"
-docs-clean = 'tools/cleanup_docs.sh'
-docs-setup = { depends-on = [
-  'docs-config',
-  'docs-assets',
-  'notebook-prepare',
-  'docs-notebooks',
+#################
+# 🐙️ GitHub Tasks
+#################
+
+repo-wiki = 'gh api -X PATCH repos/easyscience/diffraction-lib -f has_wiki=false'
+repo-discussions = 'gh api -X PATCH repos/easyscience/diffraction-lib -f has_discussions=true'
+repo-description = "gh api -X PATCH repos/easyscience/diffraction-lib -f description='Diffraction data analysis'"
+repo-homepage = "gh api -X PATCH repos/easyscience/diffraction-lib -f homepage='https://easyscience.github.io/diffraction-lib'"
+repo-config = { depends-on = [
+  'repo-wiki',
+  'repo-discussions',
+  'repo-description',
+  'repo-homepage',
 ] }
 
-## 🚀 Development & Build Tasks
+master-protection = 'gh api -X POST repos/easyscience/diffraction-lib/rulesets --input .github/configs/rulesets-master.json'
+develop-protection = 'gh api -X POST repos/easyscience/diffraction-lib/rulesets --input .github/configs/rulesets-develop.json'
+gh-pages-protection = 'gh api -X POST repos/easyscience/diffraction-lib/rulesets --input .github/configs/rulesets-gh-pages.json'
+branch-protection = { depends-on = [
+  'master-protection',
+  'develop-protection',
+  'gh-pages-protection',
+] }
+
+pages-deployment = 'gh api -X POST repos/easyscience/diffraction-lib/pages --input .github/configs/pages-deployment.json'
+
+github-labels = 'python tools/update_github_labels.py'
+
+#########################
+# ⚖️ SPDX License Headers
+#########################
+
+license-remove = 'python tools/license_headers.py remove src/ tests/ --exclude-from-pyproject-toml tool.ruff.exclude'
+license-add = 'python tools/license_headers.py add src/ tests/ --exclude-from-pyproject-toml tool.ruff.exclude'
+license-check = 'python tools/license_headers.py check src/ tests/ --exclude-from-pyproject-toml tool.ruff.exclude'
+
+####################################
+# 🚀 Other Development & Build Tasks
+####################################
+
+default-build = 'python -m build'
 dist-build = 'python -m build --wheel --outdir dist'
-spdx-update = 'python tools/update_spdx.py'
-#dev-install = 'uv pip install --requirements pyproject.toml --extra all'
-#dev-install = "python -m uv pip install --force-reinstall --editable '.[all]'"
+
 npm-config = 'npm config set registry https://registry.npmjs.org/'
 prettier-install = 'npm install --no-save --no-audit --no-fund prettier prettier-plugin-toml'
-pre-commit-setup = 'pre-commit clean && pre-commit uninstall && pre-commit install --hook-type pre-commit --hook-type pre-push --overwrite'
-pre-commit-update = 'pre-commit autoupdate'
+
 clean-pycache = "find . -type d -name '__pycache__' -prune -exec rm -rf '{}' +"
 
-dev = { depends-on = [
-  #'dev-install',
+post-install = { depends-on = [
   'npm-config',
   'prettier-install',
   #'pre-commit-setup',
 ] }
 
-wheel = { depends-on = ['npm-config', 'prettier-install'] }
-
-## 🔗 Main Package Shortcut
+##########################
+# 🔗 Main Package Shortcut
+##########################
 easydiffraction = 'python -m easydiffraction'
diff --git a/prettierrc.toml b/prettierrc.toml
index 6874d28d..b98c86eb 100644
--- a/prettierrc.toml
+++ b/prettierrc.toml
@@ -1,11 +1,22 @@
+plugins = [
+  "prettier-plugin-toml", # use the TOML plugin
+]
+
 endOfLine = 'lf'     # change line endings to LF
-printWidth = 80      # wrap Markdown files at 80 characters
 proseWrap = 'always' # change wrapping in Markdown files
 semi = false         # remove semicolons
 singleQuote = true   # use single quotes instead of double quotes
 tabWidth = 2         # change tab width to 2 spaces
 useTabs = false      # use spaces instead of tabs
 
-plugins = [
-  'prettier-plugin-toml', # use the TOML plugin
-]
+printWidth = 79 # wrap lines at 79 characters
+
+[[overrides]]
+files = ["*.md"]
+[overrides.options]
+printWidth = 72 # wrap Markdown files at 72 characters
+
+[[overrides]]
+files = ["*.yml", "*.yaml"]
+[overrides.options]
+printWidth = 88 # wrap YAML files at 88 characters
diff --git a/pycrysfml.md b/pycrysfml.md
index af681478..de9bc4d0 100644
--- a/pycrysfml.md
+++ b/pycrysfml.md
@@ -12,7 +12,8 @@
   ```bash
   otool -L .venv/lib/python3.12/site-packages/pycrysfml/crysfml08lib.so
   ```
-- If the library is linked to the wrong Python version, you can fix it with:
+- If the library is linked to the wrong Python version, you can fix it
+  with:
   ```bash
   install_name_tool -change `python3-config --prefix`/Python `python3-config --prefix`/lib/libpython3.12.dylib .venv/lib/python3.12/site-packages/pycrysfml/crysfml08lib.so
   ```
diff --git a/pyproject.toml b/pyproject.toml
index dd645c71..16d18621 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -6,9 +6,10 @@
 name = 'easydiffraction'
 dynamic = ['version'] # Use versioningit to manage the version
 description = 'Diffraction data analysis'
-authors = [{ name = 'EasyDiffraction contributors' }]
+authors = [{ name = 'EasyScience contributors' }]
 readme = 'README.md'
-license = { file = 'LICENSE' }
+license = 'BSD-3-Clause'
+license-files = ['LICENSE']
 classifiers = [
   'Intended Audience :: Science/Research',
   'Topic :: Scientific/Engineering',
@@ -20,7 +21,7 @@ classifiers = [
   'Programming Language :: Python :: 3.12',
   'Programming Language :: Python :: 3.13',
 ]
-requires-python = '>=3.11,<3.14'
+requires-python = '>=3.11'
 dependencies = [
   'essdiffraction', # ESS-specific diffraction library
   'numpy',          # Numerical computing library
@@ -43,29 +44,36 @@ dependencies = [
   'diffpy.utils',   # Utilities for PDF calculations
   'uncertainties',  # Propagation of uncertainties
   'typeguard',      # Runtime type checking
+  'darkdetect',     # Detecting dark mode (system-level)
+  'pandas',         # Displaying tables in Jupyter notebooks
+  'plotly',         # Interactive plots
+  'py3Dmol',        # Visualisation of crystal structures
+  'jupyterlab',     # Jupyter notebooks
+  'pixi-kernel',    # Pixi Jupyter kernel
 ]
 
 [project.optional-dependencies]
 dev = [
-  'build',                   # Building the package
-  'pre-commit',              # Pre-commit hooks
-  'jinja2',                  # Templating
-  'nbmake',                  # Building notebooks
-  'nbstripout',              # Strip output from notebooks
-  'nbqa',                    # Linting and formatting notebooks
-  'pytest',                  # Testing
-  'pytest-cov',              # Test coverage
-  'pytest-xdist',            # Enable parallel testing
-  'ruff',                    # Linting and formatting code
-  'radon',                   # Code complexity and maintainability
-  'validate-pyproject[all]', # Validate pyproject.toml
-  'versioningit',            # Automatic versioning from git tags
-  'jupytext',                # Jupyter notebook text format support
-  'jupyterquiz',             # Quizzes in Jupyter notebooks
-  'docformatter',            # Code formatter for docstrings
-  'interrogate',             # Check for missing docstrings
-]
-docs = [
+  'GitPython',                       # Interact with Git repositories
+  'build',                           # Building the package
+  'pre-commit',                      # Pre-commit hooks
+  'jinja2',                          # Templating
+  'nbmake',                          # Building notebooks
+  'nbstripout',                      # Strip output from notebooks
+  'nbqa',                            # Linting and formatting notebooks
+  'pytest',                          # Testing
+  'pytest-cov',                      # Test coverage
+  'pytest-xdist',                    # Enable parallel testing
+  'ruff',                            # Linting and formatting code
+  'radon',                           # Code complexity and maintainability
+  'validate-pyproject[all]',         # Validate pyproject.toml
+  'versioningit',                    # Automatic versioning from git tags
+  'jupytext',                        # Jupyter notebook text format support
+  'jupyterquiz',                     # Quizzes in Jupyter notebooks
+  'pydoclint',                       # Docstring linter
+  'format-docstring',                # Docstring formatter
+  'interrogate',                     # Docstring coverage checker
+  'copier',                          # Template management
   'mike',                            # MkDocs: Versioned documentation support
   'mkdocs',                          # Static site generator
   'mkdocs-material',                 # Documentation framework on top of MkDocs
@@ -75,35 +83,20 @@ docs = [
   'mkdocs-markdownextradata-plugin', # MkDocs: Markdown extra data support, such as global variables
   'mkdocstrings-python',             # MkDocs: Python docstring support
   'pyyaml',                          # YAML parser
-]
-visualization = [
-  'darkdetect', # Detecting dark mode (system-level)
-  'pandas',     # Displaying tables in Jupyter notebooks
-  'plotly',     # Interactive plots
-  'py3Dmol',    # Visualisation of crystal structures
-]
-all = [
-  'easydiffraction[dev]',
-  'easydiffraction[docs]',
-  'easydiffraction[visualization]',
+  'spdx-headers',                    # SPDX license header validation
 ]
 
 [project.urls]
-homepage = 'https://easydiffraction.org'
-documentation = 'https://docs.easydiffraction.org/lib'
-source = 'https://github.com/easyscience/diffraction-lib'
-tracker = 'https://github.com/easyscience/diffraction-lib/issues'
+Homepage = 'https://easydiffraction.org'
+Documentation = 'https://easyscience.github.io/diffraction-lib'
+'Release Notes' = 'https://github.com/easyscience/diffraction-lib/releases'
+'Source Code' = 'https://github.com/easyscience/diffraction-lib'
+'Issue Tracker' = 'https://github.com/easyscience/diffraction-lib/issues'
 
 ############################
 # Build system configuration
 ############################
 
-# Build system 'hatch' -- Python project manager
-# https://hatch.pypa.io/
-
-# Versioning system 'versioningit' -- Versioning from git tags
-# https://versioningit.readthedocs.io/
-
 [build-system]
 build-backend = 'hatchling.build'
 requires = ['hatchling', 'versioningit']
@@ -112,6 +105,9 @@ requires = ['hatchling', 'versioningit']
 # Configuration for hatchling
 #############################
 
+# 'hatch' -- Build system for Python
+# https://hatch.pypa.io/
+
 [tool.hatch.build.targets.wheel]
 packages = ['src/easydiffraction']
 
@@ -125,6 +121,9 @@ source = 'versioningit' # Use versioningit to manage the version
 # Configuration for versioningit
 ################################
 
+# 'versioningit' -- Versioning from git tags
+# https://versioningit.readthedocs.io/
+
 # Versioningit generates versions from git tags, so we don't need to
 # either specify them statically in pyproject.toml or save them in the
 # source code. Do not use {distance} in the version format, as it
@@ -144,43 +143,45 @@ method = 'git'
 match = ['v*']
 default-tag = 'v999.0.0'
 
-################################
-# Configuration for docformatter
-################################
-
-# 'docformatter' -- Code formatter for docstrings
-# https://docformatter.readthedocs.io/en/latest/
-
-[tool.docformatter]
-recursive = true
-wrap-summaries = 72
-wrap-descriptions = 72
-close-quotes-on-newline = true
-
 ################################
 # Configuration for interrogate
 ################################
 
-# 'interrogate' -- Check for missing docstrings
+# 'interrogate' -- Docstring coverage checker
 # https://interrogate.readthedocs.io/en/latest/
 
 [tool.interrogate]
-fail-under = 35                  # Temporarily reduce to allow gradual improvement
+fail-under = 35 # Minimum docstring coverage percentage to pass
 verbose = 1
-exclude = ["src/**/__init__.py"]
+#exclude = ['src/**/__init__.py']
 
 #######################################
 # Configuration for coverage/pytest-cov
 #######################################
 
+# 'coverage' -- Code coverage measurement tool
+# https://coverage.readthedocs.io/en/latest/
+
 [tool.coverage.run]
-branch = true                    # Measure branch coverage as well
-source = ['src/easydiffraction'] # Limit coverage to the source code directory
+branch = true    # Measure branch coverage as well
+source = ['src'] # Limit coverage to the source code directory
 
 [tool.coverage.report]
-show_missing = true # Show missing lines
-skip_covered = true # Skip files with 100% coverage in the report
-fail_under = 60     # Temporarily reduce to allow gradual improvement
+show_missing = true  # Show missing lines
+skip_covered = false # Skip files with 100% coverage in the report
+fail_under = 60      # Minimum coverage percentage to pass
+
+##########################
+# Configuration for pytest
+##########################
+
+# 'pytest' -- Testing framework
+# https://docs.pytest.org/en/stable/
+
+[tool.pytest.ini_options]
+addopts = '--import-mode=importlib'
+markers = ['fast: mark test as fast (should be run on every push)']
+testpaths = ['tests']
 
 ########################
 # Configuration for ruff
@@ -190,107 +191,197 @@ fail_under = 60     # Temporarily reduce to allow gradual improvement
 # https://docs.astral.sh/ruff/rules/
 
 [tool.ruff]
-# Temporarily exclude some directories until we have improved the code quality there
-exclude = ['tmp', 'tests/unit']
+exclude = [
+  'tmp',
+  # Vendored jupyter_dark_detect: keep as-is from upstream for easy updates
+  # https://github.com/OpenMined/jupyter-dark-detect/tree/main/jupyter_dark_detect
+  'src/easydiffraction/utils/_vendored/jupyter_dark_detect',
+]
 indent-width = 4
-line-length = 99
-# Enable new rules that are not yet stable, like DOC
-preview = true
+line-length = 99 # See also `max-line-length` in [tool.ruff.lint.pycodestyle]
+preview = true # Enable new rules that are not yet stable, like DOC
+
+# Formatting options for Ruff
+
+[tool.ruff.format]
+docstring-code-format = true    # Whether to format code snippets in docstrings
+docstring-code-line-length = 72 # Line length for code snippets in docstrings
+indent-style = 'space'          # PEP 8 recommends using spaces over tabs
+line-ending = 'lf'              # Line endings will be converted to \n
+quote-style = 'single'          # But double quotes in docstrings (PEP 8, PEP 257)
+
+# Linting rules to use with Ruff
 
-# https://docs.astral.sh/ruff/rules/
 [tool.ruff.lint]
 select = [
-  'ARG',    # Argument-related issues (e.g., unused arguments)
-  'B',      # Bugbear-specific checks (e.g., likely bugs, bad patterns)
-  'C',      # Complexity-related issues (e.g., high McCabe complexity)
-  'D',      # Docstring formatting issues (old rules)
-  'DOC',    # Docstring formatting issues (new rules)
-  'DTZ',    # Datetime timezone issues (e.g., inconsistent timezone formats)
-  'E',      # General PEP 8 style errors
-  'F',      # Pyflakes-specific checks (e.g., unused variables, imports)
-  'FLY',    # Flynt-specific checks (e.g., enforcing f-strings)
-  'G',      # Type annotation issues (e.g., missing or incorrect type hints)
-  'I',      # Import sorting issues (e.g., unsorted imports)
-  'ICN',    # Import conventions (e.g., enforce aliasing like import numpy as np)
-  'N',      # Naming convention issues (e.g., variable names, function names)
-  'NPY',    # NumPy-specific checks (e.g., array operations, broadcasting)
-  'PGH',    # Misc text patterns checks
-  'PTH',    # Encourages using pathlib over os.path
-  'S',      # Security-related issues (e.g., use of insecure functions or libraries)
-  'SIM',    # Simplification issues (e.g., redundant code, unnecessary constructs)
-  'TCH',    # Type checking issues (e.g., incompatible types, missing type annotations)
-  'TID252', # Enforces absolute imports over relative imports
-  'W',      # General PEP 8 warnings (e.g., lines too long, trailing whitespace)
-  #'ANN',   # Missing or incorrect type annotations
-  #'COM',   # Comment formatting issues
-  #'PERF',  # Performance-related issues (e.g., inefficient code patterns)
-  #'PIE',   # Potentially problematic idioms and errors
-  #'PL',    # PyLint-specific checks (e.g., code smells, potential errors)
-  #'PT',    # Pytest-related issues
-  #'RET',   # Return statement issues (e.g., inconsistent returns)
-  #'RUF',   # Ruff-specific checks (e.g., enforcing best practices)
-  #'SLF',   # Self argument-related issues (e.g., missing or misused self)
-  #'T20',   # Flake8-print-specific checks (e.g., print statements left in code)
-  #'TD',    # Type definition issues (e.g., incorrect or missing type definitions)
-  #'TRY',   # Tryceratops Try/Except-related issues (e.g., broad exceptions, empty except blocks)
-  #'UP',    # Pyupgrade-specific checks
+  # Various rules
+  #'C90',  # https://docs.astral.sh/ruff/rules/#mccabe-c90
+  'D',   # https://docs.astral.sh/ruff/rules/#pydocstyle-d
+  'F',   # https://docs.astral.sh/ruff/rules/#pyflakes-f
+  'FLY', # https://docs.astral.sh/ruff/rules/#flynt-fly
+  #'FURB', # https://docs.astral.sh/ruff/rules/#refurb-furb
+  'I',   # https://docs.astral.sh/ruff/rules/#isort-i
+  'N',   # https://docs.astral.sh/ruff/rules/#pep8-naming-n
+  'NPY', # https://docs.astral.sh/ruff/rules/#numpy-specific-rules-npy
+  'PGH', # https://docs.astral.sh/ruff/rules/#pygrep-hooks-pgh
+  #'PERF', # https://docs.astral.sh/ruff/rules/#perflint-perf
+  #'RUF',  # https://docs.astral.sh/ruff/rules/#ruff-specific-rules-ruf
+  #'TRY',  # https://docs.astral.sh/ruff/rules/#tryceratops-try
+  #'UP',   # https://docs.astral.sh/ruff/rules/#pyupgrade-up
+  # pycodestyle (E, W) rules
+  'E', # https://docs.astral.sh/ruff/rules/#error-e
+  'W', # https://docs.astral.sh/ruff/rules/#warning-w
+  # Pylint (PL) rules
+  #'PLC', # https://docs.astral.sh/ruff/rules/#convention-plc
+  #'PLE', # https://docs.astral.sh/ruff/rules/#error-ple
+  #'PLR', # https://docs.astral.sh/ruff/rules/#refactor-plr
+  #'PLW', # https://docs.astral.sh/ruff/rules/#warning-plw
+  # flake8 rules
+  #'A',     # https://docs.astral.sh/ruff/rules/#flake8-builtins-a
+  'ANN', # https://docs.astral.sh/ruff/rules/#flake8-annotations-ann
+  'ARG', # https://docs.astral.sh/ruff/rules/#flake8-unused-arguments-arg
+  #'ASYNC', # https://docs.astral.sh/ruff/rules/#flake8-async-async
+  'B', # https://docs.astral.sh/ruff/rules/#flake8-bugbear-b
+  #'BLE',   # https://docs.astral.sh/ruff/rules/#flake8-blind-except-ble
+  #'C4',    # https://docs.astral.sh/ruff/rules/#flake8-comprehensions-c4
+  #'COM',   # https://docs.astral.sh/ruff/rules/#flake8-commas-com
+  'DTZ', # https://docs.astral.sh/ruff/rules/#flake8-datetimez-dtz
+  #'EM',    # https://docs.astral.sh/ruff/rules/#flake8-errmsg-em
+  #'FA',    # https://docs.astral.sh/ruff/rules/#flake8-future-annotations-fa
+  #'FBT',   # https://docs.astral.sh/ruff/rules/#flake8-boolean-trap-fbt
+  #'FIX',   # https://docs.astral.sh/ruff/rules/#flake8-fixme-fix
+  'G',   # https://docs.astral.sh/ruff/rules/#flake8-logging-format-g
+  'ICN', # https://docs.astral.sh/ruff/rules/#flake8-import-conventions-icn
+  #'INP',   # https://docs.astral.sh/ruff/rules/#flake8-no-pep420-inp
+  #'ISC',   # https://docs.astral.sh/ruff/rules/#flake8-implicit-str-concat-isc
+  #'LOG',   # https://docs.astral.sh/ruff/rules/#flake8-logging-log
+  #'PIE',   # https://docs.astral.sh/ruff/rules/#flake8-pie-pie
+  #'PT',    # https://docs.astral.sh/ruff/rules/#flake8-pytest-style-pt
+  'PTH', # https://docs.astral.sh/ruff/rules/#flake8-use-pathlib-pth
+  #'PYI',   # https://docs.astral.sh/ruff/rules/#flake8-pyi-pyi
+  #'RET',   # https://docs.astral.sh/ruff/rules/#flake8-return-ret
+  #'RSE',   # https://docs.astral.sh/ruff/rules/#flake8-raise-rse
+  'S',   # https://docs.astral.sh/ruff/rules/#flake8-bandit-s
+  'SIM', # https://docs.astral.sh/ruff/rules/#flake8-simplify-sim
+  #'SLF',   # https://docs.astral.sh/ruff/rules/#flake8-self-slf
+  #'SLOT',  # https://docs.astral.sh/ruff/rules/#flake8-slots-slot
+  #'T20',   # https://docs.astral.sh/ruff/rules/#flake8-print-t20
+  #'TC',    # https://docs.astral.sh/ruff/rules/#flake8-type-checking-tc
+  #'TD',    # https://docs.astral.sh/ruff/rules/#flake8-todos-td
+  #'TID',   # https://docs.astral.sh/ruff/rules/#flake8-tidy-imports-tid
 ]
-# Temporarily disable some docstring checks until we have improved the docstring coverage
+
+# Exceptions to the linting rules
+
+# Ignore specific rules globally
 ignore = [
-  'C408',   # Ignore: Unnecessary `dict()` call
-  'C416',   # Ignore: Unnecessary list comprehension
-  'D100',   # Ignore: Missing docstring in public module
-  'D101',   # Ignore: Missing docstring in class
-  'D102',   # Ignore: Missing docstring in public method
-  'D103',   # Ignore: Missing docstring in public function
-  'D104',   # Ignore: Missing docstring in public package
-  'D105',   # Ignore: Missing docstring in magic method
-  'D107',   # Ignore: Missing docstring in __init__
-  'D205',   # Ignore: 1 blank line required between summary and description
-  'DOC201', # Ignore: `return` is not documented in docstring
-  'DOC501', # Ignore: Raised exception `ValueError` missing from docstring
-  'DOC502', # Ignore: Raised exception is not explicitly raised: `TypeError`
-  'DTZ005', # Ignore: `datetime.datetime.now()` called without a `tz` argument
+  'COM812', # https://docs.astral.sh/ruff/rules/missing-trailing-comma/
+  # The following is replaced by 'D'/[tool.ruff.lint.pydocstyle] and [tool.pydoclint]
+  'DOC', # https://docs.astral.sh/ruff/rules/#pydoclint-doc
+  # Disable, as [tool.format_docstring] split one-line docstrings into the canonical multi-line layout
+  'D200', # https://docs.astral.sh/ruff/rules/unnecessary-multiline-docstring/
+  # Temporary:
+  'D100',   # https://docs.astral.sh/ruff/rules/undocumented-public-module/#undocumented-publi-module-d100
+  'D104',   # https://docs.astral.sh/ruff/rules/undocumented-public-package/#undocumented-public-package-d104
+  'DTZ005', # https://docs.astral.sh/ruff/rules/call-datetime-now-without-tzinfo/#call-datetime-now-without-tzinfo-dtz005
 ]
 
-# Temporarily increase McCabe complexity limit to 19 to allow
-# refactoring in smaller steps.
-[tool.ruff.lint.mccabe]
-max-complexity = 37 # 19 # default is 10
+# Ignore specific rules in certain files or directories
+[tool.ruff.lint.per-file-ignores]
+'*/__init__.py' = [
+  'F401', # re-exports are intentional in __init__.py
+]
+'tests/**' = [
+  'ANN',    # https://docs.astral.sh/ruff/rules/#flake8-annotations-ann
+  'D',      # https://docs.astral.sh/ruff/rules/#pydocstyle-d
+  'DOC',    # https://docs.astral.sh/ruff/rules/#pydoclint-doc
+  'INP001', # https://docs.astral.sh/ruff/rules/implicit-namespace-package/
+  'S101',   # https://docs.astral.sh/ruff/rules/assert/
+  # Temporary:
+  'ARG001',
+  'ARG002',
+  'ARG004',
+  'ARG005',
+  'B011',
+  'B017',
+  'B018',
+  'E501',
+  'E741',
+  'F841',
+  'I001',
+  'N801',
+  'N805',
+  'N812',
+  'PLC',
+  'PLE',
+  'PLR',
+  'PLW',
+  'SIM117',
+  'W505',
+]
+'docs/**' = [
+  'INP001', # https://docs.astral.sh/ruff/rules/implicit-namespace-package/
+  'T201',   # https://docs.astral.sh/ruff/rules/print/
+]
+
+# Specific options for certain rules
 
 [tool.ruff.lint.flake8-tidy-imports]
+# Disallow all relative imports
 ban-relative-imports = 'all'
 
 [tool.ruff.lint.isort]
+# Forces all from imports to appear on their own line
 force-single-line = true
 
-[tool.ruff.lint.per-file-ignores]
-'*test_*.py' = ['S101']    # allow asserts in test files
-'conftest.py' = ['S101']   # allow asserts in test files
-'*/__init__.py' = ['F401'] # re-exports are intentional in __init__.py
-# Vendored jupyter_dark_detect: keep as-is from upstream for easy updates
-# https://github.com/OpenMined/jupyter-dark-detect/tree/main/jupyter_dark_detect
-'src/easydiffraction/utils/_vendored/jupyter_dark_detect/*' = [
-  'S110',   # try-except-pass
-  'S112',   # try-except-continue
-  'S404',   # subprocess module
-  'S607',   # partial executable path
-  'TID252', # relative imports
-  'W291',   # trailing whitespace (in JS strings)
-  'W505',   # doc line too long
-  'E501',   # line too long (in JS strings)
-]
+[tool.ruff.lint.mccabe]
+# Cyclomatic complexity threshold (default is 10)
+max-complexity = 10
 
 [tool.ruff.lint.pycodestyle]
-max-line-length = 100 #99# https://peps.python.org/pep-0008/#maximum-line-length
-max-doc-length = 72   # https://peps.python.org/pep-0008/#maximum-line-length
+# PEP 8 line length guidance:
+# https://peps.python.org/pep-0008/#maximum-line-length
+# Use 99 characters as the project-wide maximum for regular code lines.
+# Use 72 characters for docstrings.
+max-line-length = 99 # See also `line-length` in [tool.ruff]
+max-doc-length = 72
 
 [tool.ruff.lint.pydocstyle]
-convention = 'google'
+convention = 'numpy'
 
-[tool.ruff.format]
-docstring-code-format = true    # Whether to format code snippets in docstrings
-docstring-code-line-length = 72 # Line length for code snippets in docstrings
-indent-style = 'space'          # PEP 8 recommends using spaces over tabs
-line-ending = 'lf'              # Line endings will be converted to \n
-quote-style = 'single'          # But double quotes in docstrings (PEP 8, PEP 257)
+#############################
+# Configuration for pydoclint
+#############################
+
+# 'pydoclint' -- Docstring linter, a faster alternative to
+# 'darglint' or 'darglint2'.
+# https://pypi.org/project/pydoclint/
+
+# This is a more advanced docstring linter compared to Ruff's built-in
+# docstring check rules D or DOC. For example, among many other things,
+# it can check that arguments in the docstring, which are used by MkDocs
+# and IDEs to render parameter documentation, remain synchronized with
+# the parameter declarations in the code (in function's signature).
+
+[tool.pydoclint]
+#exclude = '\.' # Temporarily disable pydoclint until we are ready
+exclude = 'src/easydiffraction/utils/_vendored/jupyter_dark_detect' # ED only
+style = 'numpy'
+check-style-mismatch = true
+check-arg-defaults = true
+allow-init-docstring = true
+
+####################################
+# Configuration for format-docstring
+####################################
+
+# 'format-docstring' -- Code formatter for docstrings
+# https://github.com/jsh9/format-docstring
+
+[tool.format_docstring]
+#exclude = '\.' # Temporarily disable format-docstring until we are ready
+exclude = 'src/easydiffraction/utils/_vendored/jupyter_dark_detect' # ED only
+docstring_style = 'numpy'
+line_length = 72
+fix_rst_backticks = true
+verbose = 'default'
diff --git a/pytest.ini b/pytest.ini
deleted file mode 100644
index 907883e8..00000000
--- a/pytest.ini
+++ /dev/null
@@ -1,13 +0,0 @@
-[pytest]
-addopts = --import-mode=importlib
-markers =
-    fast: mark test as fast (should be run on every push)
-    integration: mark test as integration (slow; opt-in)
-testpaths =
-    tests
-filterwarnings =
-    ignore::DeprecationWarning:cryspy\.
-    ignore:.*scipy\.misc is deprecated.*:DeprecationWarning
-    # Suppress expected UserWarnings emitted during tutorial list fetching in tests
-    ignore:Falling back to latest release info\...:UserWarning:easydiffraction\.utils\.logging
-    ignore:'tutorials\.zip' not found in the release\.:UserWarning:easydiffraction\.utils\.logging
diff --git a/src/easydiffraction/__init__.py b/src/easydiffraction/__init__.py
index d15d6682..e2fb3c4e 100644
--- a/src/easydiffraction/__init__.py
+++ b/src/easydiffraction/__init__.py
@@ -1,4 +1,4 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2025 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 
 from easydiffraction.datablocks.experiment.item.factory import ExperimentFactory
diff --git a/src/easydiffraction/__main__.py b/src/easydiffraction/__main__.py
index c850b1fa..1a058dd6 100644
--- a/src/easydiffraction/__main__.py
+++ b/src/easydiffraction/__main__.py
@@ -1,4 +1,4 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2025 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 
 import sys
@@ -25,7 +25,7 @@ def main(
         help='Show easydiffraction version and exit.',
         is_eager=True,
     ),
-):
+) -> None:
     """EasyDiffraction command-line interface."""
     if version:
         ed.show_version()
@@ -38,7 +38,7 @@ def main(
 
 
 @app.command('list-tutorials')
-def list_tutorials():
+def list_tutorials() -> None:
     """List available tutorial notebooks."""
     ed.list_tutorials()
 
@@ -58,7 +58,7 @@ def download_tutorial(
         '-o',
         help='Overwrite existing file if present.',
     ),
-):
+) -> None:
     """Download a specific tutorial notebook by ID."""
     ed.download_tutorial(id=id, destination=destination, overwrite=overwrite)
 
@@ -77,7 +77,7 @@ def download_all_tutorials(
         '-o',
         help='Overwrite existing files if present.',
     ),
-):
+) -> None:
     """Download all available tutorial notebooks."""
     ed.download_all_tutorials(destination=destination, overwrite=overwrite)
 
diff --git a/src/easydiffraction/analysis/__init__.py b/src/easydiffraction/analysis/__init__.py
index 429f2648..78150ea5 100644
--- a/src/easydiffraction/analysis/__init__.py
+++ b/src/easydiffraction/analysis/__init__.py
@@ -1,2 +1,2 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2025 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
diff --git a/src/easydiffraction/analysis/analysis.py b/src/easydiffraction/analysis/analysis.py
index bf403247..874017cb 100644
--- a/src/easydiffraction/analysis/analysis.py
+++ b/src/easydiffraction/analysis/analysis.py
@@ -1,4 +1,4 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2025 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 
 from typing import List
@@ -27,31 +27,27 @@
 
 
 class Analysis:
-    """High-level orchestration of analysis tasks for a Project.
+    """
+    High-level orchestration of analysis tasks for a Project.
 
     This class wires calculators and minimizers, exposes a compact
     interface for parameters, constraints and results, and coordinates
     computations across the project's structures and experiments.
 
     Typical usage:
-
     - Display or filter parameters to fit.
     - Select a calculator/minimizer implementation.
     - Calculate patterns and run single or joint fits.
-
-    Attributes:
-    project: The parent Project object.
-        aliases: A registry of human-friendly aliases for parameters.
-        constraints: Symbolic constraints between parameters.
-    calculator: Active calculator used for computations.
-        fitter: Active fitter/minimizer driver.
     """
 
-    def __init__(self, project) -> None:
-        """Create a new Analysis instance bound to a project.
+    def __init__(self, project: object) -> None:
+        """
+        Create a new Analysis instance bound to a project.
 
-        Args:
-            project: The project that owns models and experiments.
+        Parameters
+        ----------
+        project : object
+            The project that owns models and experiments.
         """
         self.project = project
         self._aliases_type: str = AliasesFactory.default_tag()
@@ -136,10 +132,13 @@ def aliases_type(self) -> str:
 
     @aliases_type.setter
     def aliases_type(self, new_type: str) -> None:
-        """Switch to a different aliases collection type.
+        """
+        Switch to a different aliases collection type.
 
-        Args:
-            new_type: Aliases tag (e.g. ``'default'``).
+        Parameters
+        ----------
+        new_type : str
+            Aliases tag (e.g. ``'default'``).
         """
         supported_tags = AliasesFactory.supported_tags()
         if new_type not in supported_tags:
@@ -174,10 +173,13 @@ def constraints_type(self) -> str:
 
     @constraints_type.setter
     def constraints_type(self, new_type: str) -> None:
-        """Switch to a different constraints collection type.
+        """
+        Switch to a different constraints collection type.
 
-        Args:
-            new_type: Constraints tag (e.g. ``'default'``).
+        Parameters
+        ----------
+        new_type : str
+            Constraints tag (e.g. ``'default'``).
         """
         supported_tags = ConstraintsFactory.supported_tags()
         if new_type not in supported_tags:
@@ -205,12 +207,17 @@ def _get_params_as_dataframe(
         self,
         params: List[Union[NumericDescriptor, Parameter]],
     ) -> pd.DataFrame:
-        """Convert a list of parameters to a DataFrame.
+        """
+        Convert a list of parameters to a DataFrame.
 
-        Args:
-            params: List of DescriptorFloat or Parameter objects.
+        Parameters
+        ----------
+        params : List[Union[NumericDescriptor, Parameter]]
+            List of DescriptorFloat or Parameter objects.
 
-        Returns:
+        Returns
+        -------
+        pd.DataFrame
             A pandas DataFrame containing parameter information.
         """
         records = []
@@ -246,9 +253,7 @@ def _get_params_as_dataframe(
         return df
 
     def show_all_params(self) -> None:
-        """Print a table with all parameters for structures and
-        experiments.
-        """
+        """Print all parameters for structures and experiments."""
         structures_params = self.project.structures.parameters
         experiments_params = self.project.experiments.parameters
 
@@ -278,9 +283,7 @@ def show_all_params(self) -> None:
         tabler.render(filtered_df)
 
     def show_fittable_params(self) -> None:
-        """Print a table with parameters that can be included in
-        fitting.
-        """
+        """Print all fittable parameters."""
         structures_params = self.project.structures.fittable_parameters
         experiments_params = self.project.experiments.fittable_parameters
 
@@ -312,9 +315,7 @@ def show_fittable_params(self) -> None:
         tabler.render(filtered_df)
 
     def show_free_params(self) -> None:
-        """Print a table with only currently-free (varying)
-        parameters.
-        """
+        """Print only currently free (varying) parameters."""
         structures_params = self.project.structures.free_parameters
         experiments_params = self.project.experiments.free_parameters
         free_params = structures_params + experiments_params
@@ -345,7 +346,8 @@ def show_free_params(self) -> None:
         tabler.render(filtered_df)
 
     def how_to_access_parameters(self) -> None:
-        """Show Python access paths for all parameters.
+        """
+        Show Python access paths for all parameters.
 
         The output explains how to reference specific parameters in
         code.
@@ -409,7 +411,8 @@ def how_to_access_parameters(self) -> None:
         )
 
     def show_parameter_cif_uids(self) -> None:
-        """Show CIF unique IDs for all parameters.
+        """
+        Show CIF unique IDs for all parameters.
 
         The output explains which unique identifiers are used when
         creating CIF-based constraints.
@@ -472,9 +475,7 @@ def show_current_minimizer(self) -> None:
 
     @staticmethod
     def show_available_minimizers() -> None:
-        """Print a table of available minimizer drivers on this
-        system.
-        """
+        """Print available minimizer drivers on this system."""
         MinimizerFactory.show_supported()
 
     @property
@@ -484,10 +485,13 @@ def current_minimizer(self) -> Optional[str]:
 
     @current_minimizer.setter
     def current_minimizer(self, selection: str) -> None:
-        """Switch to a different minimizer implementation.
+        """
+        Switch to a different minimizer implementation.
 
-        Args:
-            selection: Minimizer selection string, e.g. 'lmfit'.
+        Parameters
+        ----------
+        selection : str
+            Minimizer selection string, e.g. 'lmfit'.
         """
         self.fitter = Fitter(selection)
         console.paragraph('Current minimizer changed to')
@@ -498,7 +502,7 @@ def current_minimizer(self, selection: str) -> None:
     # ------------------------------------------------------------------
 
     @property
-    def fit_mode(self):
+    def fit_mode(self) -> object:
         """Fit-mode category item holding the active strategy."""
         return self._fit_mode
 
@@ -509,10 +513,13 @@ def fit_mode_type(self) -> str:
 
     @fit_mode_type.setter
     def fit_mode_type(self, new_type: str) -> None:
-        """Switch to a different fit-mode category type.
+        """
+        Switch to a different fit-mode category type.
 
-        Args:
-            new_type: Fit-mode tag (e.g. ``'default'``).
+        Parameters
+        ----------
+        new_type : str
+            Fit-mode tag (e.g. ``'default'``).
         """
         supported_tags = FitModeFactory.supported_tags()
         if new_type not in supported_tags:
@@ -541,7 +548,7 @@ def show_current_fit_mode_type(self) -> None:
     # ------------------------------------------------------------------
 
     @property
-    def joint_fit_experiments(self):
+    def joint_fit_experiments(self) -> object:
         """Per-experiment weight collection for joint fitting."""
         return self._joint_fit_experiments
 
@@ -573,10 +580,8 @@ def show_constraints(self) -> None:
             columns_data=rows,
         )
 
-    def apply_constraints(self):
-        """Apply the currently defined constraints to the active
-        project.
-        """
+    def apply_constraints(self) -> None:
+        """Apply currently defined constraints to the project."""
         if not self.constraints._items:
             log.warning('No constraints defined.')
             return
@@ -585,27 +590,27 @@ def apply_constraints(self):
         self.constraints_handler.set_constraints(self.constraints)
         self.constraints_handler.apply()
 
-    def fit(self):
-        """Execute fitting using the selected mode, calculator and
-        minimizer.
+    def fit(self) -> None:
+        """
+        Execute fitting for all experiments.
 
         This method performs the optimization but does not display
         results automatically. Call :meth:`show_fit_results` after
         fitting to see a summary of the fit quality and parameter
         values.
 
-        In 'single' mode, fits each experiment independently. In
-        'joint' mode, performs a simultaneous fit across experiments
-        with weights.
+        In 'single' mode, fits each experiment independently. In 'joint'
+        mode, performs a simultaneous fit across experiments with
+        weights.
 
         Sets :attr:`fit_results` on success, which can be accessed
-        programmatically
-        (e.g., ``analysis.fit_results.reduced_chi_square``).
+        programmatically (e.g.,
+        ``analysis.fit_results.reduced_chi_square``).
 
         Example::
 
-            project.analysis.fit()
-            project.analysis.show_fit_results()  # Display results
+        project.analysis.fit() project.analysis.show_fit_results()  #
+        Display results
         """
         structures = self.project.structures
         if not structures:
@@ -659,7 +664,8 @@ def fit(self):
         self.fit_results = self.fitter.results
 
     def show_fit_results(self) -> None:
-        """Display a summary of the fit results.
+        """
+        Display a summary of the fit results.
 
         Renders the fit quality metrics (reduced χ², R-factors) and a
         table of fitted parameters with their starting values, final
@@ -670,8 +676,7 @@ def show_fit_results(self) -> None:
 
         Example::
 
-            project.analysis.fit()
-            project.analysis.show_fit_results()
+        project.analysis.fit() project.analysis.show_fit_results()
         """
         if not hasattr(self, 'fit_results') or self.fit_results is None:
             log.warning('No fit results available. Run fit() first.')
@@ -682,14 +687,17 @@ def show_fit_results(self) -> None:
 
         self.fitter._process_fit_results(structures, experiments)
 
-    def _update_categories(self, called_by_minimizer=False) -> None:
-        """Update all categories owned by Analysis.
+    def _update_categories(self, called_by_minimizer: bool = False) -> None:
+        """
+        Update all categories owned by Analysis.
 
         This ensures aliases and constraints are up-to-date before
         serialization or after parameter changes.
 
-        Args:
-            called_by_minimizer: Whether this is called during fitting.
+        Parameters
+        ----------
+        called_by_minimizer : bool, default=False
+            Whether this is called during fitting.
         """
         # Apply constraints to sync dependent parameters
         if self.constraints._items:
@@ -701,10 +709,13 @@ def _update_categories(self, called_by_minimizer=False) -> None:
             if hasattr(category, '_update'):
                 category._update(called_by_minimizer=called_by_minimizer)
 
-    def as_cif(self):
-        """Serialize the analysis section to a CIF string.
+    def as_cif(self) -> str:
+        """
+        Serialize the analysis section to a CIF string.
 
-        Returns:
+        Returns
+        -------
+        str
             The analysis section represented as a CIF document string.
         """
         from easydiffraction.io.cif.serialize import analysis_to_cif
@@ -713,9 +724,7 @@ def as_cif(self):
         return analysis_to_cif(self)
 
     def show_as_cif(self) -> None:
-        """Render the analysis section as CIF in a formatted console
-        view.
-        """
+        """Render the analysis section as CIF in console."""
         cif_text: str = self.as_cif()
         paragraph_title: str = 'Analysis 🧮 info as cif'
         console.paragraph(paragraph_title)
diff --git a/src/easydiffraction/analysis/calculators/__init__.py b/src/easydiffraction/analysis/calculators/__init__.py
index 5874b1a4..38bd1aa0 100644
--- a/src/easydiffraction/analysis/calculators/__init__.py
+++ b/src/easydiffraction/analysis/calculators/__init__.py
@@ -1,4 +1,4 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 
 from easydiffraction.analysis.calculators.crysfml import CrysfmlCalculator
diff --git a/src/easydiffraction/analysis/calculators/base.py b/src/easydiffraction/analysis/calculators/base.py
index 5ebd3086..bd667ac8 100644
--- a/src/easydiffraction/analysis/calculators/base.py
+++ b/src/easydiffraction/analysis/calculators/base.py
@@ -1,4 +1,4 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2025 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 
 from abc import ABC
@@ -17,11 +17,13 @@ class CalculatorBase(ABC):
     @property
     @abstractmethod
     def name(self) -> str:
+        """Short identifier of the calculation engine."""
         pass
 
     @property
     @abstractmethod
     def engine_imported(self) -> bool:
+        """True if the underlying calculation library is available."""
         pass
 
     @abstractmethod
@@ -31,9 +33,7 @@ def calculate_structure_factors(
         experiment: ExperimentBase,
         called_by_minimizer: bool,
     ) -> None:
-        """Calculate structure factors for a single structure and
-        experiment.
-        """
+        """Calculate structure factors for one experiment."""
         pass
 
     @abstractmethod
@@ -43,16 +43,22 @@ def calculate_pattern(
         experiment: ExperimentBase,
         called_by_minimizer: bool,
     ) -> np.ndarray:
-        """Calculate the diffraction pattern for a single structure and
-        experiment.
+        """
+        Calculate diffraction pattern for one structure-experiment pair.
 
-        Args:
-            structure: The structure object.
-            experiment: The experiment object.
-            called_by_minimizer: Whether the calculation is called by a
-                minimizer.
+        Parameters
+        ----------
+        structure : Structures
+            The structure object.
+        experiment : ExperimentBase
+            The experiment object.
+        called_by_minimizer : bool
+            Whether the calculation is called by a minimizer. Default is
+            False.
 
-        Returns:
+        Returns
+        -------
+        np.ndarray
             The calculated diffraction pattern as a NumPy array.
         """
         pass
diff --git a/src/easydiffraction/analysis/calculators/crysfml.py b/src/easydiffraction/analysis/calculators/crysfml.py
index 5d47300e..34624e2b 100644
--- a/src/easydiffraction/analysis/calculators/crysfml.py
+++ b/src/easydiffraction/analysis/calculators/crysfml.py
@@ -1,4 +1,4 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 
 from typing import Any
@@ -41,6 +41,7 @@ class CrysfmlCalculator(CalculatorBase):
 
     @property
     def name(self) -> str:
+        """Short identifier of this calculator engine."""
         return 'crysfml'
 
     def calculate_structure_factors(
@@ -48,13 +49,20 @@ def calculate_structure_factors(
         structures: Structures,
         experiments: Experiments,
     ) -> None:
-        """Call Crysfml to calculate structure factors.
-
-        Args:
-            structures: The structures to calculate structure
-                factors for.
-            experiments: The experiments associated with the sample
-                models.
+        """
+        Call Crysfml to calculate structure factors.
+
+        Parameters
+        ----------
+        structures : Structures
+            The structures to calculate structure factors for.
+        experiments : Experiments
+            The experiments associated with the sample models.
+
+        Raises
+        ------
+        NotImplementedError
+            HKL calculation is not implemented for CrysfmlCalculator.
         """
         raise NotImplementedError('HKL calculation is not implemented for CrysfmlCalculator.')
 
@@ -64,18 +72,23 @@ def calculate_pattern(
         experiment: ExperimentBase,
         called_by_minimizer: bool = False,
     ) -> Union[np.ndarray, List[float]]:
-        """Calculates the diffraction pattern using Crysfml for the
-        given structure and experiment.
-
-        Args:
-            structure: The structure to calculate the pattern for.
-            experiment: The experiment associated with the structure.
-            called_by_minimizer: Whether the calculation is called by a
-            minimizer.
-
-        Returns:
+        """
+        Calculate the diffraction pattern using Crysfml.
+
+        Parameters
+        ----------
+        structure : Structures
+            The structure to calculate the pattern for.
+        experiment : ExperimentBase
+            The experiment associated with the structure.
+        called_by_minimizer : bool, default=False
+            Whether the calculation is called by a minimizer.
+
+        Returns
+        -------
+        Union[np.ndarray, List[float]]
             The calculated diffraction pattern as a NumPy array or a
-                list of floats.
+            list of floats.
         """
         # Intentionally unused, required by public API/signature
         del called_by_minimizer
@@ -94,13 +107,19 @@ def _adjust_pattern_length(
         pattern: List[float],
         target_length: int,
     ) -> List[float]:
-        """Adjusts the length of the pattern to match the target length.
-
-        Args:
-            pattern: The pattern to adjust.
-            target_length: The desired length of the pattern.
-
-        Returns:
+        """
+        Adjust the pattern length to match the target length.
+
+        Parameters
+        ----------
+        pattern : List[float]
+            The pattern to adjust.
+        target_length : int
+            The desired length of the pattern.
+
+        Returns
+        -------
+        List[float]
             The adjusted pattern.
         """
         # TODO: Check the origin of this discrepancy coming from
@@ -114,16 +133,20 @@ def _crysfml_dict(
         structure: Structures,
         experiment: ExperimentBase,
     ) -> Dict[str, Union[ExperimentBase, Structure]]:
-        """Converts the structure and experiment into a dictionary
-        format for Crysfml.
-
-        Args:
-            structure: The structure to convert.
-            experiment: The experiment to convert.
-
-        Returns:
-            A dictionary representation of the structure and
-                experiment.
+        """
+        Convert structure and experiment into a Crysfml dictionary.
+
+        Parameters
+        ----------
+        structure : Structures
+            The structure to convert.
+        experiment : ExperimentBase
+            The experiment to convert.
+
+        Returns
+        -------
+        Dict[str, Union[ExperimentBase, Structure]]
+            A dictionary representation of the structure and experiment.
         """
         structure_dict = self._convert_structure_to_dict(structure)
         experiment_dict = self._convert_experiment_to_dict(experiment)
@@ -136,12 +159,17 @@ def _convert_structure_to_dict(
         self,
         structure: Structure,
     ) -> Dict[str, Any]:
-        """Converts a structure into a dictionary format.
+        """
+        Convert a structure into a dictionary format.
 
-        Args:
-            structure: The structure to convert.
+        Parameters
+        ----------
+        structure : Structure
+            The structure to convert.
 
-        Returns:
+        Returns
+        -------
+        Dict[str, Any]
             A dictionary representation of the structure.
         """
         structure_dict = {
@@ -176,12 +204,17 @@ def _convert_experiment_to_dict(
         self,
         experiment: ExperimentBase,
     ) -> Dict[str, Any]:
-        """Converts an experiment into a dictionary format.
+        """
+        Convert an experiment into a dictionary format.
 
-        Args:
-            experiment: The experiment to convert.
+        Parameters
+        ----------
+        experiment : ExperimentBase
+            The experiment to convert.
 
-        Returns:
+        Returns
+        -------
+        Dict[str, Any]
             A dictionary representation of the experiment.
         """
         expt_type = getattr(experiment, 'type', None)
diff --git a/src/easydiffraction/analysis/calculators/cryspy.py b/src/easydiffraction/analysis/calculators/cryspy.py
index ad09dc2a..b6a0e4d6 100644
--- a/src/easydiffraction/analysis/calculators/cryspy.py
+++ b/src/easydiffraction/analysis/calculators/cryspy.py
@@ -1,4 +1,4 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 
 import contextlib
@@ -35,7 +35,8 @@
 
 @CalculatorFactory.register
 class CryspyCalculator(CalculatorBase):
-    """Cryspy-based diffraction calculator.
+    """
+    Cryspy-based diffraction calculator.
 
     Converts EasyDiffraction models into Cryspy objects and computes
     patterns.
@@ -49,6 +50,7 @@ class CryspyCalculator(CalculatorBase):
 
     @property
     def name(self) -> str:
+        """Short identifier of this calculator engine."""
         return 'cryspy'
 
     def __init__(self) -> None:
@@ -60,17 +62,18 @@ def calculate_structure_factors(
         structure: Structure,
         experiment: ExperimentBase,
         called_by_minimizer: bool = False,
-    ):
-        """Raises a NotImplementedError as HKL calculation is not
-        implemented.
-
-        Args:
-            structure: The structure to calculate structure
-                factors for.
-            experiment: The experiment associated with the sample
-                models.
-            called_by_minimizer: Whether the calculation is called by a
-                minimizer.
+    ) -> None:
+        """
+        Raise NotImplementedError as HKL calculation is not implemented.
+
+        Parameters
+        ----------
+        structure : Structure
+            The structure to calculate structure factors for.
+        experiment : ExperimentBase
+            The experiment associated with the sample models.
+        called_by_minimizer : bool, default=False
+            Whether the calculation is called by a minimizer.
         """
         combined_name = f'{structure.name}_{experiment.name}'
 
@@ -119,24 +122,28 @@ def calculate_pattern(
         experiment: ExperimentBase,
         called_by_minimizer: bool = False,
     ) -> Union[np.ndarray, List[float]]:
-        """Calculates the diffraction pattern using Cryspy for the given
-        structure and experiment.
-
-        We only recreate the cryspy_obj if this method is
-         - NOT called by the minimizer, or
-         - the cryspy_dict is NOT yet created.
-        In other cases, we are modifying the existing cryspy_dict
-        This allows significantly speeding up the calculation
-
-        Args:
-            structure: The structure to calculate the pattern for.
-            experiment: The experiment associated with the structure.
-            called_by_minimizer: Whether the calculation is called by a
-                minimizer.
-
-        Returns:
+        """
+        Calculate the diffraction pattern using Cryspy.
+
+        We only recreate the cryspy_obj if this method is - NOT called
+        by the minimizer, or - the cryspy_dict is NOT yet created. In
+        other cases, we are modifying the existing cryspy_dict This
+        allows significantly speeding up the calculation
+
+        Parameters
+        ----------
+        structure : Structure
+            The structure to calculate the pattern for.
+        experiment : ExperimentBase
+            The experiment associated with the structure.
+        called_by_minimizer : bool, default=False
+            Whether the calculation is called by a minimizer.
+
+        Returns
+        -------
+        Union[np.ndarray, List[float]]
             The calculated diffraction pattern as a NumPy array or a
-                list of floats.
+            list of floats.
         """
         combined_name = f'{structure.name}_{experiment.name}'
 
@@ -194,14 +201,19 @@ def _recreate_cryspy_dict(
         structure: Structure,
         experiment: ExperimentBase,
     ) -> Dict[str, Any]:
-        """Recreates the Cryspy dictionary for the given structure and
-        experiment.
-
-        Args:
-            structure: The structure to update.
-            experiment: The experiment to update.
-
-        Returns:
+        """
+        Recreate the Cryspy dictionary for structure and experiment.
+
+        Parameters
+        ----------
+        structure : Structure
+            The structure to update.
+        experiment : ExperimentBase
+            The experiment to update.
+
+        Returns
+        -------
+        Dict[str, Any]
             The updated Cryspy dictionary.
         """
         combined_name = f'{structure.name}_{experiment.name}'
@@ -307,15 +319,20 @@ def _recreate_cryspy_obj(
         self,
         structure: Structure,
         experiment: ExperimentBase,
-    ) -> Any:
-        """Recreates the Cryspy object for the given structure and
-        experiment.
-
-        Args:
-            structure: The structure to recreate.
-            experiment: The experiment to recreate.
-
-        Returns:
+    ) -> object:
+        """
+        Recreate the Cryspy object for structure and experiment.
+
+        Parameters
+        ----------
+        structure : Structure
+            The structure to recreate.
+        experiment : ExperimentBase
+            The experiment to recreate.
+
+        Returns
+        -------
+        object
             The recreated Cryspy object.
         """
         cryspy_obj = str_to_globaln('')
@@ -339,12 +356,17 @@ def _convert_structure_to_cryspy_cif(
         self,
         structure: Structure,
     ) -> str:
-        """Converts a structure to a Cryspy CIF string.
+        """
+        Convert a structure to a Cryspy CIF string.
 
-        Args:
-            structure: The structure to convert.
+        Parameters
+        ----------
+        structure : Structure
+            The structure to convert.
 
-        Returns:
+        Returns
+        -------
+        str
             The Cryspy CIF string representation of the structure.
         """
         return structure.as_cif
@@ -352,16 +374,21 @@ def _convert_structure_to_cryspy_cif(
     def _convert_experiment_to_cryspy_cif(
         self,
         experiment: ExperimentBase,
-        linked_structure: Any,
+        linked_structure: object,
     ) -> str:
-        """Converts an experiment to a Cryspy CIF string.
-
-        Args:
-            experiment: The experiment to convert.
-            linked_structure: The structure linked to the
-                experiment.
-
-        Returns:
+        """
+        Convert an experiment to a Cryspy CIF string.
+
+        Parameters
+        ----------
+        experiment : ExperimentBase
+            The experiment to convert.
+        linked_structure : object
+            The structure linked to the experiment.
+
+        Returns
+        -------
+        str
             The Cryspy CIF string representation of the experiment.
         """
         # Try to get experiment attributes
diff --git a/src/easydiffraction/analysis/calculators/factory.py b/src/easydiffraction/analysis/calculators/factory.py
index fa3812da..f9860f81 100644
--- a/src/easydiffraction/analysis/calculators/factory.py
+++ b/src/easydiffraction/analysis/calculators/factory.py
@@ -1,9 +1,10 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2025 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
-"""Calculator factory — delegates to ``FactoryBase``.
+"""
+Calculator factory — delegates to ``FactoryBase``.
 
-Overrides ``_supported_map`` to filter out calculators whose engines
-are not importable in the current environment.
+Overrides ``_supported_map`` to filter out calculators whose engines are
+not importable in the current environment.
 """
 
 from __future__ import annotations
@@ -17,7 +18,8 @@
 
 
 class CalculatorFactory(FactoryBase):
-    """Factory for creating calculation engine instances.
+    """
+    Factory for creating calculation engine instances.
 
     Only calculators whose ``engine_imported`` flag is ``True`` are
     available for creation.
diff --git a/src/easydiffraction/analysis/calculators/pdffit.py b/src/easydiffraction/analysis/calculators/pdffit.py
index debd90de..4ce20276 100644
--- a/src/easydiffraction/analysis/calculators/pdffit.py
+++ b/src/easydiffraction/analysis/calculators/pdffit.py
@@ -1,6 +1,7 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
-"""PDF calculation backend using diffpy.pdffit2 if available.
+"""
+PDF calculation backend using diffpy.pdffit2 if available.
 
 The class adapts the engine to EasyDiffraction calculator interface and
 silences stdio on import to avoid noisy output in notebooks and logs.
@@ -38,6 +39,9 @@
     # print("⚠️ 'pdffit' module not found. This calculation engine will
     # not be available.")
     PdfFit = None
+    redirect_stdout = None
+    pdffit_cif_parser = None
+    _pdffit_devnull = None
 
 
 @CalculatorFactory.register
@@ -51,10 +55,30 @@ class PdffitCalculator(CalculatorBase):
     engine_imported: bool = PdfFit is not None
 
     @property
-    def name(self):
+    def name(self) -> str:
+        """Short identifier of this calculator engine."""
         return 'pdffit'
 
-    def calculate_structure_factors(self, structures, experiments):
+    def calculate_structure_factors(
+        self,
+        structures: object,
+        experiments: object,
+    ) -> list:
+        """
+        Return an empty list; PDF does not compute structure factors.
+
+        Parameters
+        ----------
+        structures : object
+            Unused; kept for interface consistency.
+        experiments : object
+            Unused; kept for interface consistency.
+
+        Returns
+        -------
+        list
+            An empty list.
+        """
         # PDF doesn't compute HKL but we keep interface consistent
         # Intentionally unused, required by public API/signature
         del structures, experiments
@@ -66,7 +90,21 @@ def calculate_pattern(
         structure: Structure,
         experiment: ExperimentBase,
         called_by_minimizer: bool = False,
-    ):
+    ) -> None:
+        """
+        Calculate the PDF pattern using PDFfit2.
+
+        Parameters
+        ----------
+        structure : Structure
+            The structure object supplying atom sites and cell
+            parameters.
+        experiment : ExperimentBase
+            The experiment object supplying instrument and peak
+            parameters.
+        called_by_minimizer : bool, default=False
+            Unused; kept for interface consistency.
+        """
         # Intentionally unused, required by public API/signature
         del called_by_minimizer
 
diff --git a/src/easydiffraction/analysis/categories/__init__.py b/src/easydiffraction/analysis/categories/__init__.py
index 429f2648..4e798e20 100644
--- a/src/easydiffraction/analysis/categories/__init__.py
+++ b/src/easydiffraction/analysis/categories/__init__.py
@@ -1,2 +1,2 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
diff --git a/src/easydiffraction/analysis/categories/aliases/__init__.py b/src/easydiffraction/analysis/categories/aliases/__init__.py
index aa72de6b..6ca3a859 100644
--- a/src/easydiffraction/analysis/categories/aliases/__init__.py
+++ b/src/easydiffraction/analysis/categories/aliases/__init__.py
@@ -1,4 +1,4 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 
 from easydiffraction.analysis.categories.aliases.default import Alias
diff --git a/src/easydiffraction/analysis/categories/aliases/default.py b/src/easydiffraction/analysis/categories/aliases/default.py
index 49b263f4..63cc5f28 100644
--- a/src/easydiffraction/analysis/categories/aliases/default.py
+++ b/src/easydiffraction/analysis/categories/aliases/default.py
@@ -1,6 +1,7 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
-"""Alias category for mapping friendly names to parameter UIDs.
+"""
+Alias category for mapping friendly names to parameter UIDs.
 
 Defines a small record type used by analysis configuration to refer to
 parameters via readable labels instead of raw unique identifiers.
@@ -19,15 +20,11 @@
 
 
 class Alias(CategoryItem):
-    """Single alias entry.
+    """
+    Single alias entry.
 
     Maps a human-readable ``label`` to a concrete ``param_uid`` used by
     the engine.
-
-    Args:
-        label: Alias label. Must match ``^[A-Za-z_][A-Za-z0-9_]*$``.
-        param_uid: Target parameter uid. Same identifier pattern as
-            ``label``.
     """
 
     def __init__(self) -> None:
@@ -60,19 +57,33 @@ def __init__(self) -> None:
     # ------------------------------------------------------------------
 
     @property
-    def label(self):
+    def label(self) -> StringDescriptor:
+        """
+        ...
+
+        Reading this property returns the underlying
+        ``StringDescriptor`` object. Assigning to it updates the
+        parameter value.
+        """
         return self._label
 
     @label.setter
-    def label(self, value):
+    def label(self, value: str) -> None:
         self._label.value = value
 
     @property
-    def param_uid(self):
+    def param_uid(self) -> StringDescriptor:
+        """
+        ...
+
+        Reading this property returns the underlying
+        ``StringDescriptor`` object. Assigning to it updates the
+        parameter value.
+        """
         return self._param_uid
 
     @param_uid.setter
-    def param_uid(self, value):
+    def param_uid(self, value: str) -> None:
         self._param_uid.value = value
 
 
@@ -85,6 +96,6 @@ class Aliases(CategoryCollection):
         description='Parameter alias mappings',
     )
 
-    def __init__(self):
+    def __init__(self) -> None:
         """Create an empty collection of aliases."""
         super().__init__(item_type=Alias)
diff --git a/src/easydiffraction/analysis/categories/aliases/factory.py b/src/easydiffraction/analysis/categories/aliases/factory.py
index 07e1fe38..f2bebe43 100644
--- a/src/easydiffraction/analysis/categories/aliases/factory.py
+++ b/src/easydiffraction/analysis/categories/aliases/factory.py
@@ -1,4 +1,4 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 """Aliases factory — delegates entirely to ``FactoryBase``."""
 
diff --git a/src/easydiffraction/analysis/categories/constraints/__init__.py b/src/easydiffraction/analysis/categories/constraints/__init__.py
index ded70ca6..97d8c03c 100644
--- a/src/easydiffraction/analysis/categories/constraints/__init__.py
+++ b/src/easydiffraction/analysis/categories/constraints/__init__.py
@@ -1,4 +1,4 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 
 from easydiffraction.analysis.categories.constraints.default import Constraint
diff --git a/src/easydiffraction/analysis/categories/constraints/default.py b/src/easydiffraction/analysis/categories/constraints/default.py
index 647dd273..71d61d95 100644
--- a/src/easydiffraction/analysis/categories/constraints/default.py
+++ b/src/easydiffraction/analysis/categories/constraints/default.py
@@ -1,6 +1,7 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
-"""Simple symbolic constraint between parameters.
+"""
+Simple symbolic constraint between parameters.
 
 Represents an equation of the form ``lhs_alias = rhs_expr`` where
 ``rhs_expr`` is evaluated elsewhere by the analysis engine.
@@ -20,12 +21,7 @@
 
 
 class Constraint(CategoryItem):
-    """Single constraint item.
-
-    Args:
-        lhs_alias: Left-hand side alias name being constrained.
-        rhs_expr: Right-hand side expression as a string.
-    """
+    """Single constraint item."""
 
     def __init__(self) -> None:
         super().__init__()
@@ -57,19 +53,33 @@ def __init__(self) -> None:
     # ------------------------------------------------------------------
 
     @property
-    def lhs_alias(self):
+    def lhs_alias(self) -> StringDescriptor:
+        """
+        Left-hand side of the equation.
+
+        Reading this property returns the underlying
+        ``StringDescriptor`` object. Assigning to it updates the
+        parameter value.
+        """
         return self._lhs_alias
 
     @lhs_alias.setter
-    def lhs_alias(self, value):
+    def lhs_alias(self, value: str) -> None:
         self._lhs_alias.value = value
 
     @property
-    def rhs_expr(self):
+    def rhs_expr(self) -> StringDescriptor:
+        """
+        Right-hand side expression.
+
+        Reading this property returns the underlying
+        ``StringDescriptor`` object. Assigning to it updates the
+        parameter value.
+        """
         return self._rhs_expr
 
     @rhs_expr.setter
-    def rhs_expr(self, value):
+    def rhs_expr(self, value: str) -> None:
         self._rhs_expr.value = value
 
 
@@ -84,11 +94,11 @@ class Constraints(CategoryCollection):
 
     _update_priority = 90  # After most others, but before data categories
 
-    def __init__(self):
+    def __init__(self) -> None:
         """Create an empty constraints collection."""
         super().__init__(item_type=Constraint)
 
-    def _update(self, called_by_minimizer=False):
+    def _update(self, called_by_minimizer: bool = False) -> None:
         del called_by_minimizer
 
         constraints = ConstraintsHandler.get()
diff --git a/src/easydiffraction/analysis/categories/constraints/factory.py b/src/easydiffraction/analysis/categories/constraints/factory.py
index 829260f4..682c9684 100644
--- a/src/easydiffraction/analysis/categories/constraints/factory.py
+++ b/src/easydiffraction/analysis/categories/constraints/factory.py
@@ -1,4 +1,4 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 """Constraints factory — delegates entirely to ``FactoryBase``."""
 
diff --git a/src/easydiffraction/analysis/categories/fit_mode/__init__.py b/src/easydiffraction/analysis/categories/fit_mode/__init__.py
index 45267810..058d054c 100644
--- a/src/easydiffraction/analysis/categories/fit_mode/__init__.py
+++ b/src/easydiffraction/analysis/categories/fit_mode/__init__.py
@@ -1,4 +1,4 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 
 from easydiffraction.analysis.categories.fit_mode.enums import FitModeEnum
diff --git a/src/easydiffraction/analysis/categories/fit_mode/enums.py b/src/easydiffraction/analysis/categories/fit_mode/enums.py
index 156e9c30..5e904eae 100644
--- a/src/easydiffraction/analysis/categories/fit_mode/enums.py
+++ b/src/easydiffraction/analysis/categories/fit_mode/enums.py
@@ -1,4 +1,4 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 """Enumeration for fit-mode values."""
 
@@ -15,9 +15,11 @@ class FitModeEnum(str, Enum):
 
     @classmethod
     def default(cls) -> FitModeEnum:
+        """Return the default fit mode (SINGLE)."""
         return cls.SINGLE
 
     def description(self) -> str:
+        """Return a human-readable description of this fit mode."""
         if self is FitModeEnum.SINGLE:
             return 'Independent fitting of each experiment; no shared parameters'
         elif self is FitModeEnum.JOINT:
diff --git a/src/easydiffraction/analysis/categories/fit_mode/factory.py b/src/easydiffraction/analysis/categories/fit_mode/factory.py
index 48edef66..f10485f8 100644
--- a/src/easydiffraction/analysis/categories/fit_mode/factory.py
+++ b/src/easydiffraction/analysis/categories/fit_mode/factory.py
@@ -1,4 +1,4 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 """Fit-mode factory — delegates entirely to ``FactoryBase``."""
 
diff --git a/src/easydiffraction/analysis/categories/fit_mode/fit_mode.py b/src/easydiffraction/analysis/categories/fit_mode/fit_mode.py
index 8a5bd24b..b0589a2e 100644
--- a/src/easydiffraction/analysis/categories/fit_mode/fit_mode.py
+++ b/src/easydiffraction/analysis/categories/fit_mode/fit_mode.py
@@ -1,6 +1,7 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
-"""Fit-mode category item.
+"""
+Fit-mode category item.
 
 Stores the active fitting strategy as a CIF-serializable descriptor
 validated by ``FitModeEnum``.
@@ -20,7 +21,8 @@
 
 @FitModeFactory.register
 class FitMode(CategoryItem):
-    """Fitting strategy selector.
+    """
+    Fitting strategy selector.
 
     Holds a single ``mode`` descriptor whose value is one of
     ``FitModeEnum`` members (``'single'`` or ``'joint'``).
@@ -47,15 +49,16 @@ def __init__(self) -> None:
         self._identity.category_code = 'fit_mode'
 
     @property
-    def mode(self):
-        """Active fitting strategy descriptor."""
+    def mode(self) -> StringDescriptor:
+        """
+        Fitting strategy.
+
+        Reading this property returns the underlying
+        ``StringDescriptor`` object. Assigning to it updates the
+        parameter value.
+        """
         return self._mode
 
     @mode.setter
     def mode(self, value: str) -> None:
-        """Set the fitting strategy value.
-
-        Args:
-            value: ``'single'`` or ``'joint'``.
-        """
         self._mode.value = value
diff --git a/src/easydiffraction/analysis/categories/joint_fit_experiments/__init__.py b/src/easydiffraction/analysis/categories/joint_fit_experiments/__init__.py
index 2857b28d..1aa8f0ae 100644
--- a/src/easydiffraction/analysis/categories/joint_fit_experiments/__init__.py
+++ b/src/easydiffraction/analysis/categories/joint_fit_experiments/__init__.py
@@ -1,4 +1,4 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 
 from easydiffraction.analysis.categories.joint_fit_experiments.default import JointFitExperiment
diff --git a/src/easydiffraction/analysis/categories/joint_fit_experiments/default.py b/src/easydiffraction/analysis/categories/joint_fit_experiments/default.py
index 6acf4f44..b94bd7de 100644
--- a/src/easydiffraction/analysis/categories/joint_fit_experiments/default.py
+++ b/src/easydiffraction/analysis/categories/joint_fit_experiments/default.py
@@ -1,6 +1,7 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
-"""Joint-fit experiment weighting configuration.
+"""
+Joint-fit experiment weighting configuration.
 
 Stores per-experiment weights to be used when multiple experiments are
 fitted simultaneously.
@@ -23,12 +24,7 @@
 
 
 class JointFitExperiment(CategoryItem):
-    """A single joint-fit entry.
-
-    Args:
-        id: Experiment identifier used in the fit session.
-        weight: Relative weight factor in the combined objective.
-    """
+    """A single joint-fit entry."""
 
     def __init__(self) -> None:
         super().__init__()
@@ -60,19 +56,33 @@ def __init__(self) -> None:
     # ------------------------------------------------------------------
 
     @property
-    def id(self):
+    def id(self) -> StringDescriptor:
+        """
+        Experiment identifier.
+
+        Reading this property returns the underlying
+        ``StringDescriptor`` object. Assigning to it updates the
+        parameter value.
+        """
         return self._id
 
     @id.setter
-    def id(self, value):
+    def id(self, value: str) -> None:
         self._id.value = value
 
     @property
-    def weight(self):
+    def weight(self) -> NumericDescriptor:
+        """
+        Weight factor.
+
+        Reading this property returns the underlying
+        ``NumericDescriptor`` object. Assigning to it updates the
+        parameter value.
+        """
         return self._weight
 
     @weight.setter
-    def weight(self, value):
+    def weight(self, value: float) -> None:
         self._weight.value = value
 
 
@@ -85,6 +95,6 @@ class JointFitExperiments(CategoryCollection):
         description='Joint-fit experiment weights',
     )
 
-    def __init__(self):
+    def __init__(self) -> None:
         """Create an empty joint-fit experiments collection."""
         super().__init__(item_type=JointFitExperiment)
diff --git a/src/easydiffraction/analysis/categories/joint_fit_experiments/factory.py b/src/easydiffraction/analysis/categories/joint_fit_experiments/factory.py
index 2919c741..57666098 100644
--- a/src/easydiffraction/analysis/categories/joint_fit_experiments/factory.py
+++ b/src/easydiffraction/analysis/categories/joint_fit_experiments/factory.py
@@ -1,8 +1,6 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
-"""Joint-fit-experiments factory — delegates entirely to
-``FactoryBase``.
-"""
+"""Joint-fit-experiments factory — delegates to ``FactoryBase``."""
 
 from __future__ import annotations
 
diff --git a/src/easydiffraction/analysis/fit_helpers/__init__.py b/src/easydiffraction/analysis/fit_helpers/__init__.py
index 429f2648..4e798e20 100644
--- a/src/easydiffraction/analysis/fit_helpers/__init__.py
+++ b/src/easydiffraction/analysis/fit_helpers/__init__.py
@@ -1,2 +1,2 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
diff --git a/src/easydiffraction/analysis/fit_helpers/metrics.py b/src/easydiffraction/analysis/fit_helpers/metrics.py
index 97c715d8..dee08f86 100644
--- a/src/easydiffraction/analysis/fit_helpers/metrics.py
+++ b/src/easydiffraction/analysis/fit_helpers/metrics.py
@@ -1,4 +1,4 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 
 from typing import Optional
@@ -14,14 +14,19 @@ def calculate_r_factor(
     y_obs: np.ndarray,
     y_calc: np.ndarray,
 ) -> float:
-    """Calculate the R-factor (reliability factor) between observed and
-    calculated data.
-
-    Args:
-        y_obs: Observed data points.
-        y_calc: Calculated data points.
-
-    Returns:
+    """
+    Calculate the R-factor between observed and calculated data.
+
+    Parameters
+    ----------
+    y_obs : np.ndarray
+        Observed data points.
+    y_calc : np.ndarray
+        Calculated data points.
+
+    Returns
+    -------
+    float
         R-factor value.
     """
     y_obs = np.asarray(y_obs)
@@ -36,15 +41,21 @@ def calculate_weighted_r_factor(
     y_calc: np.ndarray,
     weights: np.ndarray,
 ) -> float:
-    """Calculate the weighted R-factor between observed and calculated
-    data.
-
-    Args:
-        y_obs: Observed data points.
-        y_calc: Calculated data points.
-        weights: Weights for each data point.
-
-    Returns:
+    """
+    Calculate weighted R-factor between observed and calculated data.
+
+    Parameters
+    ----------
+    y_obs : np.ndarray
+        Observed data points.
+    y_calc : np.ndarray
+        Calculated data points.
+    weights : np.ndarray
+        Weights for each data point.
+
+    Returns
+    -------
+    float
         Weighted R-factor value.
     """
     y_obs = np.asarray(y_obs)
@@ -59,14 +70,19 @@ def calculate_rb_factor(
     y_obs: np.ndarray,
     y_calc: np.ndarray,
 ) -> float:
-    """Calculate the Bragg R-factor between observed and calculated
-    data.
-
-    Args:
-        y_obs: Observed data points.
-        y_calc: Calculated data points.
-
-    Returns:
+    """
+    Calculate the Bragg R-factor between observed and calculated data.
+
+    Parameters
+    ----------
+    y_obs : np.ndarray
+        Observed data points.
+    y_calc : np.ndarray
+        Calculated data points.
+
+    Returns
+    -------
+    float
         Bragg R-factor value.
     """
     y_obs = np.asarray(y_obs)
@@ -80,14 +96,19 @@ def calculate_r_factor_squared(
     y_obs: np.ndarray,
     y_calc: np.ndarray,
 ) -> float:
-    """Calculate the R-factor squared between observed and calculated
-    data.
-
-    Args:
-        y_obs: Observed data points.
-        y_calc: Calculated data points.
-
-    Returns:
+    """
+    Calculate the R-factor squared between observed and calculated data.
+
+    Parameters
+    ----------
+    y_obs : np.ndarray
+        Observed data points.
+    y_calc : np.ndarray
+        Calculated data points.
+
+    Returns
+    -------
+    float
         R-factor squared value.
     """
     y_obs = np.asarray(y_obs)
@@ -101,13 +122,19 @@ def calculate_reduced_chi_square(
     residuals: np.ndarray,
     num_parameters: int,
 ) -> float:
-    """Calculate the reduced chi-square statistic.
-
-    Args:
-        residuals: Residuals between observed and calculated data.
-        num_parameters: Number of free parameters used in the model.
-
-    Returns:
+    """
+    Calculate the reduced chi-square statistic.
+
+    Parameters
+    ----------
+    residuals : np.ndarray
+        Residuals between observed and calculated data.
+    num_parameters : int
+        Number of free parameters used in the model.
+
+    Returns
+    -------
+    float
         Reduced chi-square value.
     """
     residuals = np.asarray(residuals)
@@ -124,16 +151,24 @@ def get_reliability_inputs(
     structures: Structures,
     experiments: Experiments,
 ) -> Tuple[np.ndarray, np.ndarray, Optional[np.ndarray]]:
-    """Collect observed and calculated data points for reliability
-    calculations.
-
-    Args:
-        structures: Collection of structures.
-        experiments: Collection of experiments.
-
-    Returns:
-        Tuple containing arrays of (observed values, calculated values,
-            error values)
+    """
+    Collect observed and calculated data for reliability calculations.
+
+    Parameters
+    ----------
+    structures : Structures
+        Collection of structures.
+    experiments : Experiments
+        Collection of experiments.
+
+    Returns
+    -------
+    np.ndarray
+        Observed values.
+    np.ndarray
+        Calculated values.
+    Optional[np.ndarray]
+        Error values, or None if not available.
     """
     y_obs_all = []
     y_calc_all = []
diff --git a/src/easydiffraction/analysis/fit_helpers/reporting.py b/src/easydiffraction/analysis/fit_helpers/reporting.py
index d9dbc40e..a1468aa5 100644
--- a/src/easydiffraction/analysis/fit_helpers/reporting.py
+++ b/src/easydiffraction/analysis/fit_helpers/reporting.py
@@ -1,7 +1,6 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 
-from typing import Any
 from typing import List
 from typing import Optional
 
@@ -14,7 +13,8 @@
 
 
 class FitResults:
-    """Container for results of a single optimization run.
+    """
+    Container for results of a single optimization run.
 
     Holds success flag, chi-square metrics, iteration counts, timing,
     and parameter objects. Provides a printer to summarize key
@@ -24,41 +24,53 @@ class FitResults:
     def __init__(
         self,
         success: bool = False,
-        parameters: Optional[List[Any]] = None,
+        parameters: Optional[List[object]] = None,
         chi_square: Optional[float] = None,
         reduced_chi_square: Optional[float] = None,
         message: str = '',
         iterations: int = 0,
-        engine_result: Optional[Any] = None,
-        starting_parameters: Optional[List[Any]] = None,
+        engine_result: Optional[object] = None,
+        starting_parameters: Optional[List[object]] = None,
         fitting_time: Optional[float] = None,
-        **kwargs: Any,
+        **kwargs: object,
     ) -> None:
-        """Initialize FitResults with the given parameters.
-
-        Args:
-            success: Indicates if the fit was successful.
-            parameters: List of parameters used in the fit.
-            chi_square: Chi-square value of the fit.
-            reduced_chi_square: Reduced chi-square value of the fit.
-            message: Message related to the fit.
-            iterations: Number of iterations performed.
-            engine_result: Result from the fitting engine.
-            starting_parameters: Initial parameters for the fit.
-            fitting_time: Time taken for the fitting process.
-            **kwargs: Additional engine-specific fields. If ``redchi``
-                is provided and ``reduced_chi_square`` is not set, it is
-                used as the reduced chi-square value.
+        """
+        Initialize FitResults with the given parameters.
+
+        Parameters
+        ----------
+        success : bool, default=False
+            Indicates if the fit was successful.
+        parameters : Optional[List[object]], default=None
+            List of parameters used in the fit.
+        chi_square : Optional[float], default=None
+            Chi-square value of the fit.
+        reduced_chi_square : Optional[float], default=None
+            Reduced chi-square value of the fit.
+        message : str, default=''
+            Message related to the fit.
+        iterations : int, default=0
+            Number of iterations performed.
+        engine_result : Optional[object], default=None
+            Result from the fitting engine.
+        starting_parameters : Optional[List[object]], default=None
+            Initial parameters for the fit.
+        fitting_time : Optional[float], default=None
+            Time taken for the fitting process.
+        **kwargs : object
+            Additional engine-specific fields. If ``redchi`` is provided
+            and ``reduced_chi_square`` is not set, it is used as the
+            reduced chi-square value.
         """
         self.success: bool = success
-        self.parameters: List[Any] = parameters if parameters is not None else []
+        self.parameters: List[object] = parameters if parameters is not None else []
         self.chi_square: Optional[float] = chi_square
         self.reduced_chi_square: Optional[float] = reduced_chi_square
         self.message: str = message
         self.iterations: int = iterations
-        self.engine_result: Optional[Any] = engine_result
-        self.result: Optional[Any] = None
-        self.starting_parameters: List[Any] = (
+        self.engine_result: Optional[object] = engine_result
+        self.result: Optional[object] = None
+        self.starting_parameters: List[object] = (
             starting_parameters if starting_parameters is not None else []
         )
         self.fitting_time: Optional[float] = fitting_time
@@ -77,14 +89,21 @@ def display_results(
         f_obs: Optional[List[float]] = None,
         f_calc: Optional[List[float]] = None,
     ) -> None:
-        """Render a human-readable summary of the fit.
-
-        Args:
-            y_obs: Observed intensities for pattern R-factor metrics.
-            y_calc: Calculated intensities for pattern R-factor metrics.
-            y_err: Standard deviations of observed intensities for wR.
-            f_obs: Observed structure-factor magnitudes for Bragg R.
-            f_calc: Calculated structure-factor magnitudes for Bragg R.
+        """
+        Render a human-readable summary of the fit.
+
+        Parameters
+        ----------
+        y_obs : Optional[List[float]], default=None
+            Observed intensities for pattern R-factor metrics.
+        y_calc : Optional[List[float]], default=None
+            Calculated intensities for pattern R-factor metrics.
+        y_err : Optional[List[float]], default=None
+            Standard deviations of observed intensities for wR.
+        f_obs : Optional[List[float]], default=None
+            Observed structure-factor magnitudes for Bragg R.
+        f_calc : Optional[List[float]], default=None
+            Calculated structure-factor magnitudes for Bragg R.
         """
         status_icon = '✅' if self.success else '❌'
         rf = rf2 = wr = br = None
diff --git a/src/easydiffraction/analysis/fit_helpers/tracking.py b/src/easydiffraction/analysis/fit_helpers/tracking.py
index 438fd46d..eb32f3ea 100644
--- a/src/easydiffraction/analysis/fit_helpers/tracking.py
+++ b/src/easydiffraction/analysis/fit_helpers/tracking.py
@@ -1,9 +1,8 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 
 import time
 from contextlib import suppress
-from typing import Any
 from typing import List
 from typing import Optional
 
@@ -36,31 +35,40 @@
 
 
 class _TerminalLiveHandle:
-    """Adapter that exposes update()/close() for terminal live updates.
+    """
+    Adapter that exposes update()/close() for terminal live updates.
 
     Wraps a rich.live.Live instance but keeps the tracker decoupled from
     the underlying UI mechanism.
     """
 
-    def __init__(self, live) -> None:
+    def __init__(self, live: object) -> None:
         self._live = live
 
-    def update(self, renderable) -> None:
+    def update(self, renderable: object) -> None:
+        """
+        Refresh the live display with a new renderable.
+
+        Parameters
+        ----------
+        renderable : object
+            A Rich-compatible renderable to display.
+        """
         self._live.update(renderable, refresh=True)
 
     def close(self) -> None:
+        """Stop the live display, suppressing any errors."""
         with suppress(Exception):
             self._live.stop()
 
 
-def _make_display_handle() -> Any | None:
-    """Create and initialize a display/update handle for the
-    environment.
+def _make_display_handle() -> object | None:
+    """
+    Create and initialize a display/update handle for the environment.
 
     - In Jupyter, returns an IPython DisplayHandle and creates a
-        placeholder.
-    - In terminal, returns a _TerminalLiveHandle backed by rich Live.
-    - If neither applies, returns None.
+    placeholder. - In terminal, returns a _TerminalLiveHandle backed by
+    rich Live. - If neither applies, returns None.
     """
     if in_jupyter() and display is not None and HTML is not None:
         h = DisplayHandle()
@@ -77,7 +85,8 @@ def _make_display_handle() -> Any | None:
 
 
 class FitProgressTracker:
-    """Track and report reduced chi-square during optimization.
+    """
+    Track and report reduced chi-square during optimization.
 
     The tracker keeps iteration counters, remembers the best observed
     reduced chi-square and when it occurred, and can display progress as
@@ -94,8 +103,8 @@ def __init__(self) -> None:
         self._fitting_time: Optional[float] = None
 
         self._df_rows: List[List[str]] = []
-        self._display_handle: Optional[Any] = None
-        self._live: Optional[Any] = None
+        self._display_handle: Optional[object] = None
+        self._live: Optional[object] = None
 
     def reset(self) -> None:
         """Reset internal state before a new optimization run."""
@@ -112,13 +121,19 @@ def track(
         residuals: np.ndarray,
         parameters: List[float],
     ) -> np.ndarray:
-        """Update progress with current residuals and parameters.
-
-        Args:
-            residuals: Residuals between measured and calculated data.
-            parameters: Current free parameters being fitted.
-
-        Returns:
+        """
+        Update progress with current residuals and parameters.
+
+        Parameters
+        ----------
+        residuals : np.ndarray
+            Residuals between measured and calculated data.
+        parameters : List[float]
+            Current free parameters being fitted.
+
+        Returns
+        -------
+        np.ndarray
             Residuals unchanged, for optimizer consumption.
         """
         self._iteration += 1
@@ -200,10 +215,13 @@ def stop_timer(self) -> None:
         self._fitting_time = self._end_time - self._start_time
 
     def start_tracking(self, minimizer_name: str) -> None:
-        """Initialize display and headers and announce the minimizer.
+        """
+        Initialize display and headers and announce the minimizer.
 
-        Args:
-            minimizer_name: Name of the minimizer used for the run.
+        Parameters
+        ----------
+        minimizer_name : str
+            Name of the minimizer used for the run.
         """
         console.print(f"🚀 Starting fit process with '{minimizer_name}'...")
         console.print('📈 Goodness-of-fit (reduced χ²) change:')
@@ -221,10 +239,13 @@ def start_tracking(self, minimizer_name: str) -> None:
         )
 
     def add_tracking_info(self, row: List[str]) -> None:
-        """Append a formatted row to the progress display.
+        """
+        Append a formatted row to the progress display.
 
-        Args:
-            row: Columns corresponding to DEFAULT_HEADERS.
+        Parameters
+        ----------
+        row : List[str]
+            Columns corresponding to DEFAULT_HEADERS.
         """
         # Append and update via the active handle (Jupyter or
         # terminal live)
diff --git a/src/easydiffraction/analysis/fitting.py b/src/easydiffraction/analysis/fitting.py
index 453aaf1a..fa6c0368 100644
--- a/src/easydiffraction/analysis/fitting.py
+++ b/src/easydiffraction/analysis/fitting.py
@@ -1,4 +1,4 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 
 from typing import TYPE_CHECKING
@@ -33,20 +33,26 @@ def fit(
         structures: Structures,
         experiments: Experiments,
         weights: Optional[np.array] = None,
-        analysis=None,
+        analysis: object = None,
     ) -> None:
-        """Run the fitting process.
+        """
+        Run the fitting process.
 
         This method performs the optimization but does not display
-        results. Use :meth:`show_fit_results` on the Analysis object
-        to display the fit results after fitting is complete.
-
-        Args:
-            structures: Collection of structures.
-            experiments: Collection of experiments.
-            weights: Optional weights for joint fitting.
-            analysis: Optional Analysis object to update its categories
-                during fitting.
+        results. Use :meth:`show_fit_results` on the Analysis object to
+        display the fit results after fitting is complete.
+
+        Parameters
+        ----------
+        structures : Structures
+            Collection of structures.
+        experiments : Experiments
+            Collection of experiments.
+        weights : Optional[np.array], default=None
+            Optional weights for joint fitting.
+        analysis : object, default=None
+            Optional Analysis object to update its categories during
+            fitting.
         """
         params = structures.free_parameters + experiments.free_parameters
 
@@ -58,6 +64,19 @@ def fit(
             param._fit_start_value = param.value
 
         def objective_function(engine_params: Dict[str, Any]) -> np.ndarray:
+            """
+            Evaluate the residual for the current minimizer parameters.
+
+            Parameters
+            ----------
+            engine_params : Dict[str, Any]
+                Parameter values provided by the minimizer engine.
+
+            Returns
+            -------
+            np.ndarray
+                Residual array passed back to the minimizer.
+            """
             return self._residual_function(
                 engine_params=engine_params,
                 parameters=params,
@@ -75,16 +94,20 @@ def _process_fit_results(
         structures: Structures,
         experiments: Experiments,
     ) -> None:
-        """Collect reliability inputs and display fit results.
+        """
+        Collect reliability inputs and display fit results.
 
         This method is typically called by
         :meth:`Analysis.show_fit_results` rather than directly. It
-        calculates R-factors and other metrics, then renders them to
-        the console.
-
-        Args:
-            structures: Collection of structures.
-            experiments: Collection of experiments.
+        calculates R-factors and other metrics, then renders them to the
+        console.
+
+        Parameters
+        ----------
+        structures : Structures
+            Collection of structures.
+        experiments : Experiments
+            Collection of experiments.
         """
         y_obs, y_calc, y_err = get_reliability_inputs(
             structures,
@@ -108,13 +131,19 @@ def _collect_free_parameters(
         structures: Structures,
         experiments: Experiments,
     ) -> List[Parameter]:
-        """Collect free parameters from structures and experiments.
-
-        Args:
-            structures: Collection of structures.
-            experiments: Collection of experiments.
-
-        Returns:
+        """
+        Collect free parameters from structures and experiments.
+
+        Parameters
+        ----------
+        structures : Structures
+            Collection of structures.
+        experiments : Experiments
+            Collection of experiments.
+
+        Returns
+        -------
+        List[Parameter]
             List of free parameters.
         """
         free_params: List[Parameter] = structures.free_parameters + experiments.free_parameters
@@ -127,22 +156,33 @@ def _residual_function(
         structures: Structures,
         experiments: Experiments,
         weights: Optional[np.array] = None,
-        analysis=None,
+        analysis: object = None,
     ) -> np.ndarray:
-        """Residual function computes the difference between measured
-        and calculated patterns. It updates the parameter values
-        according to the optimizer-provided engine_params.
-
-        Args:
-            engine_params: Engine-specific parameter dict.
-            parameters: List of parameters being optimized.
-            structures: Collection of structures.
-            experiments: Collection of experiments.
-            weights: Optional weights for joint fitting.
-            analysis: Optional Analysis object to update its categories
-                during fitting.
-
-        Returns:
+        """
+        Compute residuals between measured and calculated patterns.
+
+        It updates the parameter values according to the
+        optimizer-provided engine_params.
+
+        Parameters
+        ----------
+        engine_params : Dict[str, Any]
+            Engine-specific parameter dict.
+        parameters : List[Parameter]
+            List of parameters being optimized.
+        structures : Structures
+            Collection of structures.
+        experiments : Experiments
+            Collection of experiments.
+        weights : Optional[np.array], default=None
+            Optional weights for joint fitting.
+        analysis : object, default=None
+            Optional Analysis object to update its categories during
+            fitting.
+
+        Returns
+        -------
+        np.ndarray
             Array of weighted residuals.
         """
         # Sync parameters back to objects
diff --git a/src/easydiffraction/analysis/minimizers/__init__.py b/src/easydiffraction/analysis/minimizers/__init__.py
index 8a41a6f2..01fbc136 100644
--- a/src/easydiffraction/analysis/minimizers/__init__.py
+++ b/src/easydiffraction/analysis/minimizers/__init__.py
@@ -1,4 +1,4 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2025 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 
 from easydiffraction.analysis.minimizers.dfols import DfolsMinimizer
diff --git a/src/easydiffraction/analysis/minimizers/base.py b/src/easydiffraction/analysis/minimizers/base.py
index 069601ed..f8499dad 100644
--- a/src/easydiffraction/analysis/minimizers/base.py
+++ b/src/easydiffraction/analysis/minimizers/base.py
@@ -1,4 +1,4 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2025 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 
 from abc import ABC
@@ -16,14 +16,13 @@
 
 
 class MinimizerBase(ABC):
-    """Abstract base for concrete minimizers.
-
-    Contract:
-    - Subclasses must implement ``_prepare_solver_args``,
-        ``_run_solver``, ``_sync_result_to_parameters`` and
-        ``_check_success``.
-    - The ``fit`` method orchestrates the full workflow and returns
-        :class:`FitResults`.
+    """
+    Abstract base for concrete minimizers.
+
+    Contract: - Subclasses must implement ``_prepare_solver_args``,
+    ``_run_solver``, ``_sync_result_to_parameters`` and
+    ``_check_success``. - The ``fit`` method orchestrates the full
+    workflow and returns     :class:`FitResults`.
     """
 
     def __init__(
@@ -44,10 +43,13 @@ def __init__(
         self.tracker: FitProgressTracker = FitProgressTracker()
 
     def _start_tracking(self, minimizer_name: str) -> None:
-        """Initialize progress tracking and timer.
+        """
+        Initialize progress tracking and timer.
 
-        Args:
-            minimizer_name: Human-readable name shown in progress.
+        Parameters
+        ----------
+        minimizer_name : str
+            Human-readable name shown in progress.
         """
         self.tracker.reset()
         self.tracker.start_tracking(minimizer_name)
@@ -60,12 +62,17 @@ def _stop_tracking(self) -> None:
 
     @abstractmethod
     def _prepare_solver_args(self, parameters: List[Any]) -> Dict[str, Any]:
-        """Prepare keyword-arguments for the underlying solver.
+        """
+        Prepare keyword-arguments for the underlying solver.
 
-        Args:
-            parameters: List of free parameters to be fitted.
+        Parameters
+        ----------
+        parameters : List[Any]
+            List of free parameters to be fitted.
 
-        Returns:
+        Returns
+        -------
+        Dict[str, Any]
             Mapping of keyword arguments to pass into ``_run_solver``.
         """
         pass
@@ -73,36 +80,40 @@ def _prepare_solver_args(self, parameters: List[Any]) -> Dict[str, Any]:
     @abstractmethod
     def _run_solver(
         self,
-        objective_function: Callable[..., Any],
-        engine_parameters: Dict[str, Any],
-    ) -> Any:
+        objective_function: Callable[..., object],
+        engine_parameters: Dict[str, object],
+    ) -> object:
         """Execute the concrete solver and return its raw result."""
         pass
 
     @abstractmethod
     def _sync_result_to_parameters(
         self,
-        raw_result: Any,
-        parameters: List[Any],
+        raw_result: object,
+        parameters: List[object],
     ) -> None:
-        """Copy values from ``raw_result`` back to ``parameters`` in-
-        place.
-        """
+        """Copy raw_result values back to parameters in-place."""
         pass
 
     def _finalize_fit(
         self,
-        parameters: List[Any],
-        raw_result: Any,
+        parameters: List[object],
+        raw_result: object,
     ) -> FitResults:
-        """Build :class:`FitResults` and store it on ``self.result``.
-
-        Args:
-            parameters: Parameters after the solver finished.
-            raw_result: Backend-specific solver output object.
-
-        Returns:
-            FitResults: Aggregated outcome of the fit.
+        """
+        Build :class:`FitResults` and store it on ``self.result``.
+
+        Parameters
+        ----------
+        parameters : List[object]
+            Parameters after the solver finished.
+        raw_result : object
+            Backend-specific solver output object.
+
+        Returns
+        -------
+        FitResults
+            Aggregated outcome of the fit.
         """
         self._sync_result_to_parameters(parameters, raw_result)
         success = self._check_success(raw_result)
@@ -117,23 +128,29 @@ def _finalize_fit(
         return self.result
 
     @abstractmethod
-    def _check_success(self, raw_result: Any) -> bool:
+    def _check_success(self, raw_result: object) -> bool:
         """Determine whether the fit was successful."""
         pass
 
     def fit(
         self,
-        parameters: List[Any],
-        objective_function: Callable[..., Any],
+        parameters: List[object],
+        objective_function: Callable[..., object],
     ) -> FitResults:
-        """Run the full minimization workflow.
-
-        Args:
-            parameters: Free parameters to optimize.
-            objective_function: Callable returning residuals for a given
-                set of engine arguments.
-
-        Returns:
+        """
+        Run the full minimization workflow.
+
+        Parameters
+        ----------
+        parameters : List[object]
+            Free parameters to optimize.
+        objective_function : Callable[..., object]
+            Callable returning residuals for a given set of engine
+            arguments.
+
+        Returns
+        -------
+        FitResults
             FitResults with success flag, best chi2 and timing.
         """
         minimizer_name = self.name or 'Unnamed Minimizer'
@@ -153,11 +170,11 @@ def fit(
 
     def _objective_function(
         self,
-        engine_params: Dict[str, Any],
-        parameters: List[Any],
-        structures: Any,
-        experiments: Any,
-        calculator: Any,
+        engine_params: Dict[str, object],
+        parameters: List[object],
+        structures: object,
+        experiments: object,
+        calculator: object,
     ) -> np.ndarray:
         """Default objective helper computing residuals array."""
         return self._compute_residuals(
@@ -170,11 +187,11 @@ def _objective_function(
 
     def _create_objective_function(
         self,
-        parameters: List[Any],
-        structures: Any,
-        experiments: Any,
-        calculator: Any,
-    ) -> Callable[[Dict[str, Any]], np.ndarray]:
+        parameters: List[object],
+        structures: object,
+        experiments: object,
+        calculator: object,
+    ) -> Callable[[Dict[str, object]], np.ndarray]:
         """Return a closure capturing problem context for the solver."""
         return lambda engine_params: self._objective_function(
             engine_params,
diff --git a/src/easydiffraction/analysis/minimizers/dfols.py b/src/easydiffraction/analysis/minimizers/dfols.py
index b68a034a..fad9ad06 100644
--- a/src/easydiffraction/analysis/minimizers/dfols.py
+++ b/src/easydiffraction/analysis/minimizers/dfols.py
@@ -1,7 +1,6 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 
-from typing import Any
 from typing import Dict
 from typing import List
 
@@ -17,9 +16,7 @@
 
 @MinimizerFactory.register
 class DfolsMinimizer(MinimizerBase):
-    """Minimizer using the DFO-LS package (Derivative-Free Optimization
-    for Least-Squares).
-    """
+    """Minimizer using DFO-LS (derivative-free least-squares)."""
 
     type_info = TypeInfo(
         tag='dfols',
@@ -30,13 +27,13 @@ def __init__(
         self,
         name: str = 'dfols',
         max_iterations: int = DEFAULT_MAX_ITERATIONS,
-        **kwargs: Any,
+        **kwargs: object,
     ) -> None:
         super().__init__(name=name, method=None, max_iterations=max_iterations)
         # Intentionally unused, accepted for API compatibility
         del kwargs
 
-    def _prepare_solver_args(self, parameters: List[Any]) -> Dict[str, Any]:
+    def _prepare_solver_args(self, parameters: List[object]) -> Dict[str, object]:
         x0 = []
         bounds_lower = []
         bounds_upper = []
@@ -47,21 +44,25 @@ def _prepare_solver_args(self, parameters: List[Any]) -> Dict[str, Any]:
         bounds = (np.array(bounds_lower), np.array(bounds_upper))
         return {'x0': np.array(x0), 'bounds': bounds}
 
-    def _run_solver(self, objective_function: Any, **kwargs: Any) -> Any:
+    def _run_solver(self, objective_function: object, **kwargs: object) -> object:
         x0 = kwargs.get('x0')
         bounds = kwargs.get('bounds')
         return solve(objective_function, x0=x0, bounds=bounds, maxfun=self.max_iterations)
 
     def _sync_result_to_parameters(
         self,
-        parameters: List[Any],
-        raw_result: Any,
+        parameters: List[object],
+        raw_result: object,
     ) -> None:
-        """Synchronizes the result from the solver to the parameters.
-
-        Args:
-            parameters: List of parameters being optimized.
-            raw_result: The result object returned by the solver.
+        """
+        Synchronize the solver result back to the parameters.
+
+        Parameters
+        ----------
+        parameters : List[object]
+            List of parameters being optimized.
+        raw_result : object
+            The result object returned by the solver.
         """
         # Ensure compatibility with raw_result coming from dfols.solve()
         result_values = raw_result.x if hasattr(raw_result, 'x') else raw_result
@@ -74,13 +75,18 @@ def _sync_result_to_parameters(
             # calculate later if needed
             param.uncertainty = None
 
-    def _check_success(self, raw_result: Any) -> bool:
-        """Determines success from DFO-LS result dictionary.
+    def _check_success(self, raw_result: object) -> bool:
+        """
+        Determine success from DFO-LS result dictionary.
 
-        Args:
-            raw_result: The result object returned by the solver.
+        Parameters
+        ----------
+        raw_result : object
+            The result object returned by the solver.
 
-        Returns:
+        Returns
+        -------
+        bool
             True if the optimization was successful, False otherwise.
         """
         return raw_result.flag == raw_result.EXIT_SUCCESS
diff --git a/src/easydiffraction/analysis/minimizers/factory.py b/src/easydiffraction/analysis/minimizers/factory.py
index e12a9533..18f67cc6 100644
--- a/src/easydiffraction/analysis/minimizers/factory.py
+++ b/src/easydiffraction/analysis/minimizers/factory.py
@@ -1,4 +1,4 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2025 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 """Minimizer factory — delegates to ``FactoryBase``."""
 
diff --git a/src/easydiffraction/analysis/minimizers/lmfit.py b/src/easydiffraction/analysis/minimizers/lmfit.py
index cb0a59fd..771bacad 100644
--- a/src/easydiffraction/analysis/minimizers/lmfit.py
+++ b/src/easydiffraction/analysis/minimizers/lmfit.py
@@ -1,7 +1,6 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 
-from typing import Any
 from typing import Dict
 from typing import List
 
@@ -38,16 +37,21 @@ def __init__(
 
     def _prepare_solver_args(
         self,
-        parameters: List[Any],
-    ) -> Dict[str, Any]:
-        """Prepares the solver arguments for the lmfit minimizer.
+        parameters: List[object],
+    ) -> Dict[str, object]:
+        """
+        Prepare the solver arguments for the lmfit minimizer.
 
-        Args:
-            parameters: List of parameters to be optimized.
+        Parameters
+        ----------
+        parameters : List[object]
+            List of parameters to be optimized.
 
-        Returns:
+        Returns
+        -------
+        Dict[str, object]
             A dictionary containing the prepared lmfit. Parameters
-                object.
+            object.
         """
         engine_parameters = lmfit.Parameters()
         for param in parameters:
@@ -60,14 +64,20 @@ def _prepare_solver_args(
             )
         return {'engine_parameters': engine_parameters}
 
-    def _run_solver(self, objective_function: Any, **kwargs: Any) -> Any:
-        """Runs the lmfit solver.
-
-        Args:
-            objective_function: The objective function to minimize.
-            **kwargs: Additional arguments for the solver.
-
-        Returns:
+    def _run_solver(self, objective_function: object, **kwargs: object) -> object:
+        """
+        Run the lmfit solver.
+
+        Parameters
+        ----------
+        objective_function : object
+            The objective function to minimize.
+        **kwargs : object
+            Additional arguments for the solver.
+
+        Returns
+        -------
+        object
             The result of the lmfit minimization.
         """
         engine_parameters = kwargs.get('engine_parameters')
@@ -82,14 +92,18 @@ def _run_solver(self, objective_function: Any, **kwargs: Any) -> Any:
 
     def _sync_result_to_parameters(
         self,
-        parameters: List[Any],
-        raw_result: Any,
+        parameters: List[object],
+        raw_result: object,
     ) -> None:
-        """Synchronizes the result from the solver to the parameters.
-
-        Args:
-            parameters: List of parameters being optimized.
-            raw_result: The result object returned by the solver.
+        """
+        Synchronize the result from the solver to the parameters.
+
+        Parameters
+        ----------
+        parameters : List[object]
+            List of parameters being optimized.
+        raw_result : object
+            The result object returned by the solver.
         """
         param_values = raw_result.params if hasattr(raw_result, 'params') else raw_result
 
@@ -101,13 +115,18 @@ def _sync_result_to_parameters(
                 param._set_value_from_minimizer(param_result.value)
                 param.uncertainty = getattr(param_result, 'stderr', None)
 
-    def _check_success(self, raw_result: Any) -> bool:
-        """Determines success from lmfit MinimizerResult.
+    def _check_success(self, raw_result: object) -> bool:
+        """
+        Determine success from lmfit MinimizerResult.
 
-        Args:
-            raw_result: The result object returned by the solver.
+        Parameters
+        ----------
+        raw_result : object
+            The result object returned by the solver.
 
-        Returns:
+        Returns
+        -------
+        bool
             True if the optimization was successful, False otherwise.
         """
         return getattr(raw_result, 'success', False)
@@ -116,18 +135,25 @@ def _iteration_callback(
         self,
         params: lmfit.Parameters,
         iter: int,
-        resid: Any,
-        *args: Any,
-        **kwargs: Any,
+        resid: object,
+        *args: object,
+        **kwargs: object,
     ) -> None:
-        """Callback function for each iteration of the minimizer.
-
-        Args:
-            params: The current parameters.
-            iter: The current iteration number.
-            resid: The residuals.
-            *args: Additional positional arguments.
-            **kwargs: Additional keyword arguments.
+        """
+        Handle each iteration callback of the minimizer.
+
+        Parameters
+        ----------
+        params : lmfit.Parameters
+            The current parameters.
+        iter : int
+            The current iteration number.
+        resid : object
+            The residuals.
+        *args : object
+            Additional positional arguments.
+        **kwargs : object
+            Additional keyword arguments.
         """
         # Intentionally unused, required by callback signature
         del params, resid, args, kwargs
diff --git a/src/easydiffraction/core/__init__.py b/src/easydiffraction/core/__init__.py
index 429f2648..4e798e20 100644
--- a/src/easydiffraction/core/__init__.py
+++ b/src/easydiffraction/core/__init__.py
@@ -1,2 +1,2 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
diff --git a/src/easydiffraction/core/category.py b/src/easydiffraction/core/category.py
index d4b57dc3..25e81894 100644
--- a/src/easydiffraction/core/category.py
+++ b/src/easydiffraction/core/category.py
@@ -1,4 +1,4 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2025 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 
 from __future__ import annotations
@@ -30,12 +30,13 @@ def __str__(self) -> str:
         return f'<{name} ({params})>'
 
     # TODO: Common for all categories
-    def _update(self, called_by_minimizer=False):
+    def _update(self, called_by_minimizer: bool = False) -> None:
         del called_by_minimizer
         pass
 
     @property
-    def unique_name(self):
+    def unique_name(self) -> str:
+        """Fully qualified name: datablock, category, entry."""
         parts = [
             self._identity.datablock_entry_name,
             self._identity.category_code,
@@ -46,7 +47,8 @@ def unique_name(self):
         return '.'.join(str_parts)
 
     @property
-    def parameters(self):
+    def parameters(self) -> list:
+        """All GenericDescriptorBase instances on this item."""
         return [v for v in vars(self).values() if isinstance(v, GenericDescriptorBase)]
 
     @property
@@ -54,7 +56,7 @@ def as_cif(self) -> str:
         """Return CIF representation of this object."""
         return category_item_to_cif(self)
 
-    def from_cif(self, block, idx=0):
+    def from_cif(self, block: object, idx: int = 0) -> None:
         """Populate this item from a CIF block."""
         category_item_from_cif(self, block, idx)
 
@@ -160,7 +162,8 @@ def help(self) -> None:
 
 
 class CategoryCollection(CollectionBase):
-    """Handles loop-style category containers (e.g. AtomSites).
+    """
+    Handles loop-style category containers (e.g. AtomSites).
 
     Each item is a CategoryItem (component).
     """
@@ -168,16 +171,17 @@ class CategoryCollection(CollectionBase):
     # TODO: Common for all categories
     _update_priority = 10  # Default. Lower values run first.
 
-    def _key_for(self, item):
+    def _key_for(self, item: object) -> str | None:
         """Return the category-level identity key for *item*."""
         return item._identity.category_entry_name
 
     def _mark_parent_dirty(self) -> None:
-        """Set ``_need_categories_update`` on the parent datablock.
+        """
+        Set ``_need_categories_update`` on the parent datablock.
 
         Called whenever the collection content changes (items added or
-        removed) so that subsequent ``_update_categories()`` calls
-        re-run all category updates.
+        removed) so that subsequent ``_update_categories()`` calls re-
+        run all category updates.
         """
         parent = getattr(self, '_parent', None)
         if parent is not None and hasattr(parent, '_need_categories_update'):
@@ -190,16 +194,17 @@ def __str__(self) -> str:
         return f'<{name} collection ({size} items)>'
 
     # TODO: Common for all categories
-    def _update(self, called_by_minimizer=False):
+    def _update(self, called_by_minimizer: bool = False) -> None:
         del called_by_minimizer
         pass
 
     @property
-    def unique_name(self):
+    def unique_name(self) -> str | None:
+        """Return None; collections have no unique name."""
         return None
 
     @property
-    def parameters(self):
+    def parameters(self) -> list:
         """All parameters from all items in this collection."""
         params = []
         for item in self._items:
@@ -211,27 +216,33 @@ def as_cif(self) -> str:
         """Return CIF representation of this object."""
         return category_collection_to_cif(self)
 
-    def from_cif(self, block):
+    def from_cif(self, block: object) -> None:
         """Populate this collection from a CIF block."""
         category_collection_from_cif(self, block)
 
-    def add(self, item) -> None:
-        """Insert or replace a pre-built item into the collection.
+    def add(self, item: object) -> None:
+        """
+        Insert or replace a pre-built item into the collection.
 
-        Args:
-            item: A ``CategoryItem`` instance to add.
+        Parameters
+        ----------
+        item : object
+            A ``CategoryItem`` instance to add.
         """
         self[item._identity.category_entry_name] = item
         self._mark_parent_dirty()
 
-    def create(self, **kwargs) -> None:
-        """Create a new item with the given attributes and add it.
+    def create(self, **kwargs: object) -> None:
+        """
+        Create a new item with the given attributes and add it.
 
         A default instance of the collection's item type is created,
         then each keyword argument is applied via ``setattr``.
 
-        Args:
-            **kwargs: Attribute names and values for the new item.
+        Parameters
+        ----------
+        **kwargs : object
+            Attribute names and values for the new item.
         """
         child_obj = self._item_type()
 
diff --git a/src/easydiffraction/core/collection.py b/src/easydiffraction/core/collection.py
index 164f3d77..0560a37e 100644
--- a/src/easydiffraction/core/collection.py
+++ b/src/easydiffraction/core/collection.py
@@ -1,33 +1,41 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
-"""Lightweight container for guarded items with name-based indexing.
+"""
+Lightweight container for guarded items with name-based indexing.
 
-`CollectionBase` maintains an ordered list of items and a lazily rebuilt
-index by the item's identity key. It supports dict-like access for get,
-set and delete, along with iteration over the items.
+``CollectionBase`` maintains an ordered list of items and a lazily
+rebuilt index by the item's identity key. It supports dict-like access
+for get, set and delete, along with iteration over the items.
 """
 
 from __future__ import annotations
 
+from typing import Generator
+from typing import Iterator
+
 from easydiffraction.core.guard import GuardedBase
 
 
 class CollectionBase(GuardedBase):
-    """A minimal collection with stable iteration and name indexing.
+    """
+    A minimal collection with stable iteration and name indexing.
 
-    Args:
-        item_type: Type of items accepted by the collection. Used for
-            validation and tooling; not enforced at runtime here.
+    Parameters
+    ----------
+    item_type : type
+        Type of items accepted by the collection. Used for validation
+        and tooling; not enforced at runtime here.
     """
 
-    def __init__(self, item_type) -> None:
+    def __init__(self, item_type: type) -> None:
         super().__init__()
         self._items: list = []
         self._index: dict = {}
         self._item_type = item_type
 
-    def __getitem__(self, name: str):
-        """Return an item by its identity key.
+    def __getitem__(self, name: str) -> GuardedBase:
+        """
+        Return an item by its identity key.
 
         Rebuilds the internal index on a cache miss to stay consistent
         with recent mutations.
@@ -38,7 +46,7 @@ def __getitem__(self, name: str):
             self._rebuild_index()
             return self._index[name]
 
-    def __setitem__(self, name: str, item) -> None:
+    def __setitem__(self, name: str, item: GuardedBase) -> None:
         """Insert or replace an item under the given identity key."""
         # Check if item with same key exists; if so, replace it
         for i, existing_item in enumerate(self._items):
@@ -66,7 +74,7 @@ def __contains__(self, name: str) -> bool:
         self._rebuild_index()
         return name in self._index
 
-    def __iter__(self):
+    def __iter__(self) -> Iterator[GuardedBase]:
         """Iterate over items in insertion order."""
         return iter(self._items)
 
@@ -75,18 +83,27 @@ def __len__(self) -> int:
         return len(self._items)
 
     def remove(self, name: str) -> None:
-        """Remove an item by its key.
+        """
+        Remove an item by its key.
 
-        Args:
-            name: Identity key of the item to remove.
+        Parameters
+        ----------
+        name : str
+            Identity key of the item to remove.
 
-        Raises:
-            KeyError: If no item with the given key exists.
+        Raises
+        ------
+        KeyError
+            If no item with the given key exists.
         """
-        del self[name]
+        try:
+            del self[name]
+        except KeyError:
+            raise
 
-    def _key_for(self, item):
-        """Return the identity key for *item*.
+    def _key_for(self, item: GuardedBase) -> str | None:
+        """
+        Return the identity key for *item*.
 
         Subclasses must override to return the appropriate key
         (``category_entry_name`` or ``datablock_entry_name``).
@@ -101,20 +118,20 @@ def _rebuild_index(self) -> None:
             if key:
                 self._index[key] = item
 
-    def keys(self):
+    def keys(self) -> Generator[str | None, None, None]:
         """Yield keys for all items in insertion order."""
         return (self._key_for(item) for item in self._items)
 
-    def values(self):
+    def values(self) -> Generator[GuardedBase, None, None]:
         """Yield items in insertion order."""
         return (item for item in self._items)
 
-    def items(self):
+    def items(self) -> Generator[tuple[str | None, GuardedBase], None, None]:
         """Yield ``(key, item)`` pairs in insertion order."""
         return ((self._key_for(item), item) for item in self._items)
 
     @property
-    def names(self):
+    def names(self) -> list[str | None]:
         """List of all item keys in the collection."""
         return list(self.keys())
 
diff --git a/src/easydiffraction/core/datablock.py b/src/easydiffraction/core/datablock.py
index 221845b6..6a1ef289 100644
--- a/src/easydiffraction/core/datablock.py
+++ b/src/easydiffraction/core/datablock.py
@@ -1,4 +1,4 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2025 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 
 from __future__ import annotations
@@ -13,7 +13,7 @@
 class DatablockItem(GuardedBase):
     """Base class for items in a datablock collection."""
 
-    def __init__(self):
+    def __init__(self) -> None:
         super().__init__()
         self._need_categories_update = True
 
@@ -33,7 +33,7 @@ def __repr__(self) -> str:
 
     def _update_categories(
         self,
-        called_by_minimizer=False,
+        called_by_minimizer: bool = False,
     ) -> None:
         # TODO: Make abstract method and implement in subclasses.
         # This should call apply_symmetry and apply_constraints in the
@@ -62,11 +62,13 @@ def _update_categories(
         self._need_categories_update = False
 
     @property
-    def unique_name(self):
+    def unique_name(self) -> str | None:
+        """Unique name of this datablock item (from identity)."""
         return self._identity.datablock_entry_name
 
     @property
-    def categories(self):
+    def categories(self) -> list:
+        """All category objects in this datablock by priority."""
         cats = [
             v for v in vars(self).values() if isinstance(v, (CategoryItem, CategoryCollection))
         ]
@@ -74,10 +76,8 @@ def categories(self):
         return sorted(cats, key=lambda c: type(c)._update_priority)
 
     @property
-    def parameters(self):
-        """All parameters from all categories contained in this
-        datablock.
-        """
+    def parameters(self) -> list:
+        """All parameters from all categories in this datablock."""
         params = []
         for v in self.categories:
             params.extend(v.parameters)
@@ -118,26 +118,29 @@ def help(self) -> None:
 
 
 class DatablockCollection(CollectionBase):
-    """Handles top-level category collections (e.g. Structures,
-    Experiments).
+    """
+    Collection of top-level datablocks (e.g. Structures, Experiments).
 
     Each item is a DatablockItem.
 
-    Subclasses provide explicit ``add_from_*`` convenience methods
-    that delegate to the corresponding factory classmethods, then
-    call :meth:`add` with the resulting item.
+    Subclasses provide explicit ``add_from_*`` convenience methods that
+    delegate to the corresponding factory classmethods, then call
+    :meth:`add` with the resulting item.
     """
 
-    def _key_for(self, item):
+    def _key_for(self, item: object) -> str | None:
         """Return the datablock-level identity key for *item*."""
         return item._identity.datablock_entry_name
 
-    def add(self, item) -> None:
-        """Add a pre-built item to the collection.
+    def add(self, item: object) -> None:
+        """
+        Add a pre-built item to the collection.
 
-        Args:
-            item: A ``DatablockItem`` instance (e.g. a ``Structure``
-                or ``ExperimentBase`` subclass).
+        Parameters
+        ----------
+        item : object
+            A ``DatablockItem`` instance (e.g. a ``Structure`` or
+            ``ExperimentBase`` subclass).
         """
         self[item._identity.datablock_entry_name] = item
 
@@ -148,25 +151,26 @@ def __str__(self) -> str:
         return f'<{name} collection ({size} items)>'
 
     @property
-    def unique_name(self):
+    def unique_name(self) -> str | None:
+        """Return None; collections have no unique name."""
         return None
 
     @property
-    def parameters(self):
+    def parameters(self) -> list:
         """All parameters from all datablocks in this collection."""
         params = []
         for db in self._items:
             params.extend(db.parameters)
         return params
 
-    # was in class AbstractDatablock(ABC):
     @property
     def fittable_parameters(self) -> list:
+        """All non-constrained Parameters in this collection."""
         return [p for p in self.parameters if isinstance(p, Parameter) and not p.constrained]
 
-    # was in class AbstractDatablock(ABC):
     @property
     def free_parameters(self) -> list:
+        """All fittable parameters that are currently marked as free."""
         return [p for p in self.fittable_parameters if p.free]
 
     @property
diff --git a/src/easydiffraction/core/diagnostic.py b/src/easydiffraction/core/diagnostic.py
index 74c2ab3b..dc5ea4c4 100644
--- a/src/easydiffraction/core/diagnostic.py
+++ b/src/easydiffraction/core/diagnostic.py
@@ -1,6 +1,7 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2025 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
-"""Diagnostics helpers for logging validation messages.
+"""
+Diagnostics helpers for logging validation messages.
 
 This module centralizes human-friendly error and debug logs for
 attribute validation and configuration checks.
@@ -19,8 +20,9 @@ class Diagnostics:
     # ==============================================================
 
     @staticmethod
-    def type_override_error(cls_name: str, expected, got):
-        """Report an invalid DataTypes override.
+    def type_override_error(cls_name: str, expected: object, got: object) -> None:
+        """
+        Report an invalid DataTypes override.
 
         Used when descriptor and AttributeSpec types conflict.
         """
@@ -41,7 +43,7 @@ def type_override_error(cls_name: str, expected, got):
     def readonly_error(
         name: str,
         key: str | None = None,
-    ):
+    ) -> None:
         """Log an attempt to change a read-only attribute."""
         Diagnostics._log_error(
             f"Cannot modify read-only attribute '{key}' of <{name}>.",
@@ -53,11 +55,9 @@ def attr_error(
         name: str,
         key: str,
         allowed: set[str],
-        label='Allowed',
-    ):
-        """Log access to an unknown attribute and suggest closest
-        key.
-        """
+        label: str = 'Allowed',
+    ) -> None:
+        """Log unknown attribute access and suggest closest key."""
         suggestion = Diagnostics._build_suggestion(key, allowed)
         # Use consistent (label) logic for allowed
         hint = suggestion or Diagnostics._build_allowed(allowed, label=label)
@@ -73,11 +73,11 @@ def attr_error(
     @staticmethod
     def type_mismatch(
         name: str,
-        value,
-        expected_type,
-        current=None,
-        default=None,
-    ):
+        value: object,
+        expected_type: object,
+        current: object = None,
+        default: object = None,
+    ) -> None:
         """Log a type mismatch and keep current or default value."""
         got_type = type(value).__name__
         msg = (
@@ -91,12 +91,12 @@ def type_mismatch(
     @staticmethod
     def range_mismatch(
         name: str,
-        value,
-        ge,
-        le,
-        current=None,
-        default=None,
-    ):
+        value: object,
+        ge: float,
+        le: float,
+        current: object = None,
+        default: object = None,
+    ) -> None:
         """Log range violation for a numeric value."""
         msg = f'Value mismatch for <{name}>. Provided {value!r} outside [{ge}, {le}].'
         Diagnostics._log_error_with_fallback(
@@ -106,11 +106,11 @@ def range_mismatch(
     @staticmethod
     def choice_mismatch(
         name: str,
-        value,
-        allowed,
-        current=None,
-        default=None,
-    ):
+        value: object,
+        allowed: object,
+        current: object = None,
+        default: object = None,
+    ) -> None:
         """Log an invalid choice against allowed values."""
         msg = f'Value mismatch for <{name}>. Provided {value!r} is unknown.'
         if allowed is not None:
@@ -122,11 +122,11 @@ def choice_mismatch(
     @staticmethod
     def regex_mismatch(
         name: str,
-        value,
-        pattern,
-        current=None,
-        default=None,
-    ):
+        value: object,
+        pattern: str,
+        current: object = None,
+        default: object = None,
+    ) -> None:
         """Log a regex mismatch with the expected pattern."""
         msg = (
             f"Value mismatch for <{name}>. Provided {value!r} does not match pattern '{pattern}'."
@@ -136,24 +136,24 @@ def regex_mismatch(
         )
 
     @staticmethod
-    def no_value(name, default):
+    def no_value(name: str, default: object) -> None:
         """Log that default will be used due to missing value."""
         Diagnostics._log_debug(f'No value provided for <{name}>. Using default {default!r}.')
 
     @staticmethod
-    def none_value(name):
+    def none_value(name: str) -> None:
         """Log explicit None provided by a user."""
         Diagnostics._log_debug(f'Using `None` explicitly provided for <{name}>.')
 
     @staticmethod
-    def none_value_skip_range(name):
+    def none_value_skip_range(name: str) -> None:
         """Log that range validation is skipped due to None."""
         Diagnostics._log_debug(
             f'Skipping range validation as `None` is explicitly provided for <{name}>.'
         )
 
     @staticmethod
-    def validated(name, value, stage: str | None = None):
+    def validated(name: str, value: object, stage: str | None = None) -> None:
         """Log that a value passed a validation stage."""
         stage_info = f' {stage}' if stage else ''
         Diagnostics._log_debug(f'Value {value!r} for <{name}> passed{stage_info} validation.')
@@ -163,17 +163,17 @@ def validated(name, value, stage: str | None = None):
     # ==============================================================
 
     @staticmethod
-    def _log_error(msg, exc_type=Exception):
+    def _log_error(msg: str, exc_type: type[Exception] = Exception) -> None:
         """Emit an error-level message via shared logger."""
         log.error(msg, exc_type=exc_type)
 
     @staticmethod
     def _log_error_with_fallback(
-        msg,
-        current=None,
-        default=None,
-        exc_type=Exception,
-    ):
+        msg: str,
+        current: object = None,
+        default: object = None,
+        exc_type: type[Exception] = Exception,
+    ) -> None:
         """Emit an error message and mention kept or default value."""
         if current is not None:
             msg += f' Keeping current {current!r}.'
@@ -182,7 +182,7 @@ def _log_error_with_fallback(
         log.error(msg, exc_type=exc_type)
 
     @staticmethod
-    def _log_debug(msg):
+    def _log_debug(msg: str) -> None:
         """Emit a debug-level message via shared logger."""
         log.debug(msg)
 
@@ -191,7 +191,7 @@ def _log_debug(msg):
     # ==============================================================
 
     @staticmethod
-    def _suggest(key: str, allowed: set[str]):
+    def _suggest(key: str, allowed: set[str]) -> str | None:
         """Suggest closest allowed key using string similarity."""
         if not allowed:
             return None
@@ -200,12 +200,12 @@ def _suggest(key: str, allowed: set[str]):
         return matches[0] if matches else None
 
     @staticmethod
-    def _build_suggestion(key: str, allowed: set[str]):
+    def _build_suggestion(key: str, allowed: set[str]) -> str:
         s = Diagnostics._suggest(key, allowed)
         return f" Did you mean '{s}'?" if s else ''
 
     @staticmethod
-    def _build_allowed(allowed, label='Allowed attributes'):
+    def _build_allowed(allowed: object, label: str = 'Allowed attributes') -> str:
         # allowed may be a set, list, or other iterable
         if allowed:
             allowed_list = list(allowed)
diff --git a/src/easydiffraction/core/factory.py b/src/easydiffraction/core/factory.py
index 8e699085..af99217a 100644
--- a/src/easydiffraction/core/factory.py
+++ b/src/easydiffraction/core/factory.py
@@ -1,10 +1,10 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2025 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
-"""Base factory with registration, lookup, and context-dependent
-defaults.
+"""
+Base factory with registration, lookup, and context-dependent defaults.
 
-Concrete factories inherit from ``FactoryBase`` and only need to
-define ``_default_rules``.
+Concrete factories inherit from ``FactoryBase`` and only need to define
+``_default_rules``.
 """
 
 from __future__ import annotations
@@ -21,12 +21,13 @@
 
 
 class FactoryBase:
-    """Shared base for all factories.
+    """
+    Shared base for all factories.
 
     Subclasses must set:
 
     * ``_default_rules`` -- mapping of ``frozenset`` conditions to tag
-      strings.  Use ``frozenset(): 'tag'`` for a universal default.
+    strings.  Use ``frozenset(): 'tag'`` for a universal default.
 
     The ``__init_subclass__`` hook ensures every subclass gets its own
     independent ``_registry`` list.
@@ -35,7 +36,7 @@ class FactoryBase:
     _registry: List[Type] = []
     _default_rules: Dict[FrozenSet[Tuple[str, Any]], str] = {}
 
-    def __init_subclass__(cls, **kwargs):
+    def __init_subclass__(cls, **kwargs: object) -> None:
         """Give each subclass its own independent registry and rules."""
         super().__init_subclass__(**kwargs)
         cls._registry = []
@@ -47,14 +48,14 @@ def __init_subclass__(cls, **kwargs):
     # ------------------------------------------------------------------
 
     @classmethod
-    def register(cls, klass):
-        """Class decorator to register a concrete class.
+    def register(cls, klass: type) -> type:
+        """
+        Class decorator to register a concrete class.
 
         Usage::
 
-            @SomeFactory.register
-            class MyClass(SomeBase):
-                type_info = TypeInfo(...)
+        @SomeFactory.register class MyClass(SomeBase):     type_info =
+        TypeInfo(...)
 
         Returns the class unmodified.
         """
@@ -80,22 +81,29 @@ def supported_tags(cls) -> List[str]:
     # ------------------------------------------------------------------
 
     @classmethod
-    def default_tag(cls, **conditions) -> str:
-        """Resolve the default tag for a given experimental context.
+    def default_tag(cls, **conditions: object) -> str:
+        """
+        Resolve the default tag for a given experimental context.
 
         Uses *largest-subset matching*: the rule whose key is the
-        biggest subset of the given conditions wins.  A rule with an
+        biggest subset of the given conditions wins. A rule with an
         empty key (``frozenset()``) acts as a universal fallback.
 
-        Args:
-            **conditions: Experimental-axis values, e.g.
-                ``scattering_type=ScatteringTypeEnum.BRAGG``.
+        Parameters
+        ----------
+        **conditions : object
+            Experimental-axis values, e.g.
+            ``scattering_type=ScatteringTypeEnum.BRAGG``.
 
-        Returns:
+        Returns
+        -------
+        str
             The resolved default tag string.
 
-        Raises:
-            ValueError: If no rule matches the given conditions.
+        Raises
+        ------
+        ValueError
+            If no rule matches the given conditions.
         """
         condition_set = frozenset(conditions.items())
         best_match_tag: str | None = None
@@ -118,15 +126,26 @@ def default_tag(cls, **conditions) -> str:
     # ------------------------------------------------------------------
 
     @classmethod
-    def create(cls, tag: str, **kwargs) -> Any:
-        """Instantiate a registered class by *tag*.
-
-        Args:
-            tag: ``type_info.tag`` value.
-            **kwargs: Forwarded to the class constructor.
-
-        Raises:
-            ValueError: If *tag* is not in the registry.
+    def create(cls, tag: str, **kwargs: object) -> object:
+        """
+        Instantiate a registered class by *tag*.
+
+        Parameters
+        ----------
+        tag : str
+            ``type_info.tag`` value.
+        **kwargs : object
+            Forwarded to the class constructor.
+
+        Returns
+        -------
+        object
+            A new instance of the registered class.
+
+        Raises
+        ------
+        ValueError
+            If *tag* is not in the registry.
         """
         supported = cls._supported_map()
         if tag not in supported:
@@ -134,13 +153,21 @@ def create(cls, tag: str, **kwargs) -> Any:
         return supported[tag](**kwargs)
 
     @classmethod
-    def create_default_for(cls, **conditions) -> Any:
-        """Instantiate the default class for a given context.
+    def create_default_for(cls, **conditions: object) -> object:
+        """
+        Instantiate the default class for a given context.
 
         Combines ``default_tag(**conditions)`` with ``create(tag)``.
 
-        Args:
-            **conditions: Experimental-axis values.
+        Parameters
+        ----------
+        **conditions : object
+            Experimental-axis values.
+
+        Returns
+        -------
+        object
+            A new instance of the default class.
         """
         tag = cls.default_tag(**conditions)
         return cls.create(tag)
@@ -153,20 +180,32 @@ def create_default_for(cls, **conditions) -> Any:
     def supported_for(
         cls,
         *,
-        calculator=None,
-        sample_form=None,
-        scattering_type=None,
-        beam_mode=None,
-        radiation_probe=None,
+        calculator: object = None,
+        sample_form: object = None,
+        scattering_type: object = None,
+        beam_mode: object = None,
+        radiation_probe: object = None,
     ) -> List[Type]:
-        """Return classes matching conditions and/or calculator.
-
-        Args:
-            calculator: Optional ``CalculatorEnum`` value.
-            sample_form: Optional ``SampleFormEnum`` value.
-            scattering_type: Optional ``ScatteringTypeEnum`` value.
-            beam_mode: Optional ``BeamModeEnum`` value.
-            radiation_probe: Optional ``RadiationProbeEnum`` value.
+        """
+        Return classes matching conditions and/or calculator.
+
+        Parameters
+        ----------
+        calculator : object, default=None
+            Optional ``CalculatorEnum`` value.
+        sample_form : object, default=None
+            Optional ``SampleFormEnum`` value.
+        scattering_type : object, default=None
+            Optional ``ScatteringTypeEnum`` value.
+        beam_mode : object, default=None
+            Optional ``BeamModeEnum`` value.
+        radiation_probe : object, default=None
+            Optional ``RadiationProbeEnum`` value.
+
+        Returns
+        -------
+        List[Type]
+            Classes matching the given conditions.
         """
         result = []
         for klass in cls._supported_map().values():
@@ -192,20 +231,27 @@ def supported_for(
     def show_supported(
         cls,
         *,
-        calculator=None,
-        sample_form=None,
-        scattering_type=None,
-        beam_mode=None,
-        radiation_probe=None,
+        calculator: object = None,
+        sample_form: object = None,
+        scattering_type: object = None,
+        beam_mode: object = None,
+        radiation_probe: object = None,
     ) -> None:
-        """Pretty-print a table of supported types.
-
-        Args:
-            calculator: Optional ``CalculatorEnum`` filter.
-            sample_form: Optional ``SampleFormEnum`` filter.
-            scattering_type: Optional ``ScatteringTypeEnum`` filter.
-            beam_mode: Optional ``BeamModeEnum`` filter.
-            radiation_probe: Optional ``RadiationProbeEnum`` filter.
+        """
+        Pretty-print a table of supported types.
+
+        Parameters
+        ----------
+        calculator : object, default=None
+            Optional ``CalculatorEnum`` filter.
+        sample_form : object, default=None
+            Optional ``SampleFormEnum`` filter.
+        scattering_type : object, default=None
+            Optional ``ScatteringTypeEnum`` filter.
+        beam_mode : object, default=None
+            Optional ``BeamModeEnum`` filter.
+        radiation_probe : object, default=None
+            Optional ``RadiationProbeEnum`` filter.
         """
         matching = cls.supported_for(
             calculator=calculator,
diff --git a/src/easydiffraction/core/guard.py b/src/easydiffraction/core/guard.py
index a0033d14..17b60fb5 100644
--- a/src/easydiffraction/core/guard.py
+++ b/src/easydiffraction/core/guard.py
@@ -1,33 +1,35 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2025 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 
 from __future__ import annotations
 
 from abc import ABC
 from abc import abstractmethod
+from typing import Generator
 
 from easydiffraction.core.diagnostic import Diagnostics
 from easydiffraction.core.identity import Identity
 
 
 class GuardedBase(ABC):
-    """Base class enforcing controlled attribute access and parent
-    linkage.
-    """
+    """Base class enforcing controlled attribute access and linkage."""
 
     _diagnoser = Diagnostics()
 
-    def __init__(self):
+    def __init__(self) -> None:
         super().__init__()
         self._identity = Identity(owner=self)
 
     def __str__(self) -> str:
+        """Return the string representation of this object."""
         return f'<{self.unique_name}>'
 
     def __repr__(self) -> str:
+        """Return the developer representation of this object."""
         return self.__str__()
 
-    def __getattr__(self, key: str):
+    def __getattr__(self, key: str) -> None:
+        """Raise a descriptive error for unknown attribute access."""
         cls = type(self)
         allowed = cls._public_attrs()
         if key not in allowed:
@@ -38,7 +40,8 @@ def __getattr__(self, key: str):
                 label='Allowed readable/writable',
             )
 
-    def __setattr__(self, key: str, value):
+    def __setattr__(self, key: str, value: object) -> None:
+        """Set an attribute with access-control diagnostics."""
         # Always allow private or special attributes without diagnostics
         if key.startswith('_'):
             object.__setattr__(self, key, value)
@@ -70,20 +73,21 @@ def __setattr__(self, key: str, value):
 
         self._assign_attr(key, value)
 
-    def _assign_attr(self, key, value):
+    def _assign_attr(self, key: str, value: object) -> None:
         """Low-level assignment with parent linkage."""
         object.__setattr__(self, key, value)
         if key != '_parent' and isinstance(value, GuardedBase):
             object.__setattr__(value, '_parent', self)
 
     @classmethod
-    def _iter_properties(cls):
-        """Iterate over all public properties defined in the class
-        hierarchy.
+    def _iter_properties(cls) -> Generator[tuple[str, property], None, None]:
+        """
+        Iterate over all public properties in the class hierarchy.
 
-        Yields:
-            tuple[str, property]: Each (key, property) pair for public
-            attributes.
+        Yields
+        ------
+        tuple[str, property]
+            Each (key, property) pair for public attributes.
         """
         for base in cls.mro():
             for key, attr in base.__dict__.items():
@@ -92,12 +96,12 @@ def _iter_properties(cls):
                 yield key, attr
 
     @classmethod
-    def _public_attrs(cls):
+    def _public_attrs(cls) -> set[str]:
         """All public properties (read-only + writable)."""
         return {key for key, _ in cls._iter_properties()}
 
     @classmethod
-    def _public_readonly_attrs(cls):
+    def _public_readonly_attrs(cls) -> set[str]:
         """Public properties without a setter."""
         return {key for key, prop in cls._iter_properties() if prop.fset is None}
 
@@ -106,18 +110,19 @@ def _public_writable_attrs(cls) -> set[str]:
         """Public properties with a setter."""
         return {key for key, prop in cls._iter_properties() if prop.fset is not None}
 
-    def _allowed_attrs(self, writable_only=False):
+    def _allowed_attrs(self, writable_only: bool = False) -> set[str]:
         cls = type(self)
         if writable_only:
             return cls._public_writable_attrs()
         return cls._public_attrs()
 
     @property
-    def _log_name(self):
+    def _log_name(self) -> str:
         return self.unique_name or type(self).__name__
 
     @property
-    def unique_name(self):
+    def unique_name(self) -> str:
+        """Fallback unique name: the class name."""
         return type(self).__name__
 
     # @property
@@ -131,23 +136,20 @@ def unique_name(self):
 
     @property
     @abstractmethod
-    def parameters(self):
-        """Return a list of parameter objects (to be implemented by
-        subclasses).
-        """
+    def parameters(self) -> list:
+        """Return a list of parameters (implemented by subclasses)."""
         raise NotImplementedError
 
     @property
     @abstractmethod
     def as_cif(self) -> str:
-        """Return CIF representation of this object (to be implemented
-        by subclasses).
-        """
+        """Return CIF representation (implemented by subclasses)."""
         raise NotImplementedError
 
     @staticmethod
     def _first_sentence(docstring: str | None) -> str:
-        """Extract the first paragraph from a docstring.
+        """
+        Extract the first paragraph from a docstring.
 
         Returns text before the first blank line, with continuation
         lines joined into a single string.
@@ -158,11 +160,14 @@ def _first_sentence(docstring: str | None) -> str:
         return ' '.join(line.strip() for line in first_para.splitlines())
 
     @classmethod
-    def _iter_methods(cls):
-        """Iterate over public methods in the class hierarchy.
+    def _iter_methods(cls) -> Generator[tuple[str, object], None, None]:
+        """
+        Iterate over public methods in the class hierarchy.
 
-        Yields:
-            tuple[str, callable]: Each (name, function) pair.
+        Yields
+        ------
+        tuple[str, object]
+            Each (name, function) pair.
         """
         seen: set = set()
         for base in cls.mro():
diff --git a/src/easydiffraction/core/identity.py b/src/easydiffraction/core/identity.py
index 5848bf18..d64fce81 100644
--- a/src/easydiffraction/core/identity.py
+++ b/src/easydiffraction/core/identity.py
@@ -1,6 +1,7 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2025 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
-"""Identity helpers to build CIF-like hierarchical names.
+"""
+Identity helpers to build CIF-like hierarchical names.
 
 Used by containers and items to expose datablock/category/entry names
 without tight coupling.
@@ -19,13 +20,13 @@ def __init__(
         datablock_entry: Callable | None = None,
         category_code: str | None = None,
         category_entry: Callable | None = None,
-    ):
+    ) -> None:
         self._owner = owner
         self._datablock_entry = datablock_entry
         self._category_code = category_code
         self._category_entry = category_entry
 
-    def _resolve_up(self, attr: str, visited=None):
+    def _resolve_up(self, attr: str, visited: set[int] | None = None) -> str | None:
         """Resolve attribute by walking up parent chain safely."""
         if visited is None:
             visited = set()
@@ -47,31 +48,31 @@ def _resolve_up(self, attr: str, visited=None):
         return None
 
     @property
-    def datablock_entry_name(self):
+    def datablock_entry_name(self) -> str | None:
         """Datablock entry name or None if not set."""
         return self._resolve_up('datablock_entry')
 
     @datablock_entry_name.setter
-    def datablock_entry_name(self, func: callable):
+    def datablock_entry_name(self, func: callable) -> None:
         """Set callable returning datablock entry name."""
         self._datablock_entry = func
 
     @property
-    def category_code(self):
+    def category_code(self) -> str | None:
         """Category code like 'atom_site' or 'background'."""
         return self._resolve_up('category_code')
 
     @category_code.setter
-    def category_code(self, value: str):
+    def category_code(self, value: str) -> None:
         """Set category code value."""
         self._category_code = value
 
     @property
-    def category_entry_name(self):
+    def category_entry_name(self) -> str | None:
         """Category entry name or None if not set."""
         return self._resolve_up('category_entry')
 
     @category_entry_name.setter
-    def category_entry_name(self, func: callable):
+    def category_entry_name(self, func: callable) -> None:
         """Set callable returning category entry name."""
         self._category_entry = func
diff --git a/src/easydiffraction/core/metadata.py b/src/easydiffraction/core/metadata.py
index 4a820515..318d64bb 100644
--- a/src/easydiffraction/core/metadata.py
+++ b/src/easydiffraction/core/metadata.py
@@ -1,12 +1,13 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
-"""Metadata dataclasses for factory-created classes.
+"""
+Metadata dataclasses for factory-created classes.
 
 Three frozen dataclasses describe a concrete class:
 
-- ``TypeInfo`` — stable tag and human-readable description.
-- ``Compatibility`` — experimental conditions (multiple fields).
-- ``CalculatorSupport`` — which calculation engines can handle it.
+- ``TypeInfo`` — stable tag and human-readable description. -
+``Compatibility`` — experimental conditions (multiple fields). -
+``CalculatorSupport`` — which calculation engines can handle it.
 """
 
 from __future__ import annotations
@@ -17,16 +18,19 @@
 
 @dataclass(frozen=True)
 class TypeInfo:
-    """Stable identity and human-readable description for a factory-
-    created class.
-
-    Attributes:
-        tag: Short, stable string identifier used for serialization,
-            user-facing selection, and factory lookup.  Must be unique
-            within a factory's registry.  Examples: ``'line-segment'``,
-            ``'pseudo-voigt'``, ``'cryspy'``.
-        description: One-line human-readable explanation.  Used in
-            ``show_supported()`` tables and documentation.
+    """
+    Stable identity and description for a factory-created class.
+
+    Attributes
+    ----------
+    tag : str
+        Short, stable string identifier used for serialization,
+        user-facing selection, and factory lookup. Must be unique within
+        a factory's registry. Examples: ``'line-segment'``,
+        ``'pseudo-voigt'``, ``'cryspy'``.
+    description : str, default=''
+        One-line human-readable explanation. Used in
+        ``show_supported()`` tables and documentation.
     """
 
     tag: str
@@ -35,7 +39,8 @@ class TypeInfo:
 
 @dataclass(frozen=True)
 class Compatibility:
-    """Experimental conditions under which a class can be used.
+    """
+    Experimental conditions under which a class can be used.
 
     Each field is a frozenset of enum values representing the set of
     supported values for that axis.  An empty frozenset means
@@ -49,12 +54,13 @@ class Compatibility:
 
     def supports(
         self,
-        sample_form=None,
-        scattering_type=None,
-        beam_mode=None,
-        radiation_probe=None,
+        sample_form: object = None,
+        scattering_type: object = None,
+        beam_mode: object = None,
+        radiation_probe: object = None,
     ) -> bool:
-        """Check if this compatibility matches the given conditions.
+        """
+        Check if this compatibility matches the given conditions.
 
         Each argument is an optional enum member.  Returns ``True`` if
         every provided value is in the corresponding frozenset (or the
@@ -62,10 +68,8 @@ def supports(
 
         Example::
 
-            compat.supports(
-                scattering_type=ScatteringTypeEnum.BRAGG,
-                beam_mode=BeamModeEnum.CONSTANT_WAVELENGTH,
-            )
+        compat.supports(     scattering_type=ScatteringTypeEnum.BRAGG,
+        beam_mode=BeamModeEnum.CONSTANT_WAVELENGTH, )
         """
         for axis, value in (
             ('sample_form', sample_form),
@@ -83,22 +87,30 @@ def supports(
 
 @dataclass(frozen=True)
 class CalculatorSupport:
-    """Which calculation engines can handle this class.
+    """
+    Which calculation engines can handle this class.
 
-    Attributes:
-        calculators: Frozenset of ``CalculatorEnum`` values.  Empty
-            means "any calculator" (no restriction).
+    Attributes
+    ----------
+    calculators : FrozenSet, default=frozenset()
+        Frozenset of ``CalculatorEnum`` values. Empty means "any
+        calculator" (no restriction).
     """
 
     calculators: FrozenSet = frozenset()
 
-    def supports(self, calculator) -> bool:
-        """Check if a specific calculator can handle this class.
+    def supports(self, calculator: object) -> bool:
+        """
+        Check if a specific calculator can handle this class.
 
-        Args:
-            calculator: A ``CalculatorEnum`` value.
+        Parameters
+        ----------
+        calculator : object
+            A ``CalculatorEnum`` value.
 
-        Returns:
+        Returns
+        -------
+        bool
             ``True`` if the calculator is in the set, or if the set is
             empty (meaning any calculator is accepted).
         """
diff --git a/src/easydiffraction/core/singleton.py b/src/easydiffraction/core/singleton.py
index 10af4667..9033822a 100644
--- a/src/easydiffraction/core/singleton.py
+++ b/src/easydiffraction/core/singleton.py
@@ -1,4 +1,4 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 
 from typing import Any
@@ -16,7 +16,8 @@
 
 
 class SingletonBase:
-    """Base class to implement Singleton pattern.
+    """
+    Base class to implement Singleton pattern.
 
     Ensures only one shared instance of a class is ever created. Useful
     for managing shared state across the library.
@@ -26,7 +27,7 @@ class SingletonBase:
 
     @classmethod
     def get(cls: Type[T]) -> T:
-        """Returns the shared instance, creating it if needed."""
+        """Return the shared instance, creating it if needed."""
         if cls._instance is None:
             cls._instance = cls()
         return cls._instance
@@ -43,11 +44,12 @@ def __init__(self) -> None:
         self._uid_map: Dict[str, Any] = {}
 
     def get_uid_map(self) -> Dict[str, Any]:
-        """Returns the current UID-to-Parameter map."""
+        """Return the current UID-to-Parameter map."""
         return self._uid_map
 
-    def add_to_uid_map(self, parameter):
-        """Adds a single Parameter or Descriptor object to the UID map.
+    def add_to_uid_map(self, parameter: object) -> None:
+        """
+        Add a single Parameter or Descriptor object to the UID map.
 
         Only Descriptor or Parameter instances are allowed (not
         Components or others).
@@ -61,8 +63,9 @@ def add_to_uid_map(self, parameter):
             )
         self._uid_map[parameter.uid] = parameter
 
-    def replace_uid(self, old_uid, new_uid):
-        """Replaces an existing UID key in the UID map with a new UID.
+    def replace_uid(self, old_uid: str, new_uid: str) -> None:
+        """
+        Replace an existing UID key in the UID map with a new UID.
 
         Moves the associated parameter from old_uid to new_uid. Raises a
         KeyError if the old_uid doesn't exist.
@@ -82,8 +85,8 @@ def replace_uid(self, old_uid, new_uid):
 # TODO: Implement changing atrr '.constrained' back to False
 #  when removing constraints
 class ConstraintsHandler(SingletonBase):
-    """Manages user-defined parameter constraints using aliases and
-    expressions.
+    """
+    Manage parameter constraints using aliases and expressions.
 
     Uses the asteval interpreter for safe evaluation of mathematical
     expressions. Constraints are defined as: lhs_alias =
@@ -102,29 +105,27 @@ def __init__(self) -> None:
         # Internally parsed constraints as (lhs_alias, rhs_expr) tuples
         self._parsed_constraints: List[Tuple[str, str]] = []
 
-    def set_aliases(self, aliases):
-        """Sets the alias map (name → parameter wrapper).
+    def set_aliases(self, aliases: object) -> None:
+        """
+        Set the alias map (name → parameter wrapper).
 
         Called when user registers parameter aliases like:
-            alias='biso_La', param=model.atom_sites['La'].b_iso
+        alias='biso_La', param=model.atom_sites['La'].b_iso
         """
         self._alias_to_param = dict(aliases.items())
 
-    def set_constraints(self, constraints):
-        """Sets the constraints and triggers parsing into internal
-        format.
+    def set_constraints(self, constraints: object) -> None:
+        """
+        Set the constraints and triggers parsing into internal format.
 
-        Called when user registers expressions like:
-            lhs_alias='occ_Ba', rhs_expr='1 - occ_La'
+        Called when user registers expressions like: lhs_alias='occ_Ba',
+        rhs_expr='1 - occ_La'
         """
         self._constraints = constraints._items
         self._parse_constraints()
 
     def _parse_constraints(self) -> None:
-        """Converts raw expression input into a normalized internal list
-        of (lhs_alias, rhs_expr) pairs, stripping whitespace and
-        skipping invalid entries.
-        """
+        """Parse raw expressions into (lhs_alias, rhs_expr) pairs."""
         self._parsed_constraints = []
 
         for expr_obj in self._constraints:
@@ -136,12 +137,11 @@ def _parse_constraints(self) -> None:
                 self._parsed_constraints.append(constraint)
 
     def apply(self) -> None:
-        """Evaluates constraints and applies them to dependent
-        parameters.
+        """
+        Evaluate constraints and applies them to dependent parameters.
 
-        For each constraint:
-        - Evaluate RHS using current values of aliases
-        - Locate the dependent parameter by alias → uid → param
+        For each constraint: - Evaluate RHS using current values of
+        aliases - Locate the dependent parameter by alias → uid → param
         - Update its value and mark it as constrained
         """
         if not self._parsed_constraints:
diff --git a/src/easydiffraction/core/validation.py b/src/easydiffraction/core/validation.py
index 1fd268d9..d3c411af 100644
--- a/src/easydiffraction/core/validation.py
+++ b/src/easydiffraction/core/validation.py
@@ -1,6 +1,7 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2025 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
-"""Lightweight runtime validation utilities.
+"""
+Lightweight runtime validation utilities.
 
 Provides DataTypes, type/content validators, and AttributeSpec used by
 descriptors and parameters. Only documentation was added here.
@@ -23,6 +24,8 @@
 
 # TODO: MkDocs doesn't unpack types
 class DataTypeHints:
+    """Type hint aliases for numeric, string, and boolean types."""
+
     Numeric = int | float | np.integer | np.floating
     String = str
     Bool = bool
@@ -32,16 +35,19 @@ class DataTypeHints:
 
 
 class DataTypes(Enum):
+    """Enumeration of supported data types for descriptors."""
+
     NUMERIC = (int, float, np.integer, np.floating)
     STRING = (str,)
     BOOL = (bool,)
     ANY = (object,)  # fallback for unconstrained
 
-    def __str__(self):
+    def __str__(self) -> str:
+        """Return the lowercase name of the data type."""
         return self.name.lower()
 
     @property
-    def expected_type(self):
+    def expected_type(self) -> tuple:
         """Convenience alias for tuple of allowed Python types."""
         return self.value
 
@@ -59,7 +65,8 @@ class ValidationStage(Enum):
     MEMBERSHIP = auto()
     REGEX = auto()
 
-    def __str__(self):
+    def __str__(self) -> str:
+        """Return the lowercase name of the validation stage."""
         return self.name.lower()
 
 
@@ -72,8 +79,15 @@ class ValidatorBase(ABC):
     """Abstract base class for all validators."""
 
     @abstractmethod
-    def validated(self, value, name, default=None, current=None):
-        """Return a validated value or fallback.
+    def validated(
+        self,
+        value: object,
+        name: str,
+        default: object = None,
+        current: object = None,
+    ) -> object:
+        """
+        Return a validated value or fallback.
 
         Subclasses must implement this method.
         """
@@ -81,9 +95,9 @@ def validated(self, value, name, default=None, current=None):
 
     def _fallback(
         self,
-        current=None,
-        default=None,
-    ):
+        current: object = None,
+        default: object = None,
+    ) -> object:
         """Return current if set, else default."""
         return current if current is not None else default
 
@@ -94,7 +108,7 @@ def _fallback(
 class TypeValidator(ValidatorBase):
     """Ensure a value is of the expected data type."""
 
-    def __init__(self, expected_type: DataTypes):
+    def __init__(self, expected_type: DataTypes) -> None:
         if isinstance(expected_type, DataTypes):
             self.expected_type = expected_type
             self.expected_label = str(expected_type)
@@ -103,13 +117,14 @@ def __init__(self, expected_type: DataTypes):
 
     def validated(
         self,
-        value,
-        name,
-        default=None,
-        current=None,
-        allow_none=False,
-    ):
-        """Validate type and return value or fallback.
+        value: object,
+        name: str,
+        default: object = None,
+        current: object = None,
+        allow_none: bool = False,
+    ) -> object:
+        """
+        Validate type and return value or fallback.
 
         If allow_none is True, None bypasses content checks.
         """
@@ -151,18 +166,18 @@ class RangeValidator(ValidatorBase):
     def __init__(
         self,
         *,
-        ge=-np.inf,
-        le=np.inf,
-    ):
+        ge: float = -np.inf,
+        le: float = np.inf,
+    ) -> None:
         self.ge, self.le = ge, le
 
     def validated(
         self,
-        value,
-        name,
-        default=None,
-        current=None,
-    ):
+        value: object,
+        name: str,
+        default: object = None,
+        current: object = None,
+    ) -> object:
         """Validate range and return value or fallback."""
         if not (self.ge <= value <= self.le):
             Diagnostics.range_mismatch(
@@ -187,22 +202,23 @@ def validated(
 
 
 class MembershipValidator(ValidatorBase):
-    """Ensure that a value is among allowed choices.
+    """
+    Ensure that a value is among allowed choices.
 
-    `allowed` may be an iterable or a callable returning a collection.
+    ``allowed`` may be an iterable or a callable returning a collection.
     """
 
-    def __init__(self, allowed):
+    def __init__(self, allowed: object) -> None:
         # Do not convert immediately to list — may be callable
         self.allowed = allowed
 
     def validated(
         self,
-        value,
-        name,
-        default=None,
-        current=None,
-    ):
+        value: object,
+        name: str,
+        default: object = None,
+        current: object = None,
+    ) -> object:
         """Validate membership and return value or fallback."""
         # Dynamically evaluate allowed if callable (e.g. lambda)
         allowed_values = self.allowed() if callable(self.allowed) else self.allowed
@@ -231,16 +247,16 @@ def validated(
 class RegexValidator(ValidatorBase):
     """Ensure that a string matches a given regular expression."""
 
-    def __init__(self, pattern):
+    def __init__(self, pattern: str) -> None:
         self.pattern = re.compile(pattern)
 
     def validated(
         self,
-        value,
-        name,
-        default=None,
-        current=None,
-    ):
+        value: object,
+        name: str,
+        default: object = None,
+        current: object = None,
+    ) -> object:
         """Validate regex and return value or fallback."""
         if not self.pattern.fullmatch(value):
             Diagnostics.regex_mismatch(
@@ -271,11 +287,11 @@ class AttributeSpec:
     def __init__(
         self,
         *,
-        default=None,
-        data_type=None,
-        validator=None,
+        default: object = None,
+        data_type: DataTypes | None = None,
+        validator: ValidatorBase | None = None,
         allow_none: bool = False,
-    ):
+    ) -> None:
         self.default = default
         self.allow_none = allow_none
         self._data_type_validator = TypeValidator(data_type) if data_type else None
@@ -283,11 +299,12 @@ def __init__(
 
     def validated(
         self,
-        value,
-        name,
-        current=None,
-    ):
-        """Validate through type and content validators.
+        value: object,
+        name: str,
+        current: object = None,
+    ) -> object:
+        """
+        Validate through type and content validators.
 
         Returns validated value, possibly default or current if errors
         occur. None may short-circuit further checks when allowed.
diff --git a/src/easydiffraction/core/variable.py b/src/easydiffraction/core/variable.py
index 6b33a39e..8e06b2a9 100644
--- a/src/easydiffraction/core/variable.py
+++ b/src/easydiffraction/core/variable.py
@@ -1,4 +1,4 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 
 from __future__ import annotations
@@ -6,7 +6,6 @@
 import secrets
 import string
 from typing import TYPE_CHECKING
-from typing import Any
 
 import numpy as np
 
@@ -27,18 +26,14 @@
 
 
 class GenericDescriptorBase(GuardedBase):
-    """Base class for all parameter-like descriptors.
+    """
+    Base class for all parameter-like descriptors.
 
     A descriptor encapsulates a typed value with validation,
     human-readable name/description and a globally unique identifier
     that is stable across the session. Concrete subclasses specialize
-    the expected data type and can extend the public API with
-    additional behavior (e.g. units).
-
-    Attributes:
-        name: Local parameter name (e.g. 'a', 'b_iso').
-        description: Optional human-readable description.
-        uid: Stable random identifier for external references.
+    the expected data type and can extend the public API with additional
+    behavior (e.g. units).
     """
 
     _BOOL_SPEC_TEMPLATE = AttributeSpec(
@@ -52,13 +47,18 @@ def __init__(
         value_spec: AttributeSpec,
         name: str,
         description: str = None,
-    ):
-        """Initialize the descriptor with validation and identity.
-
-        Args:
-            value_spec: Validation specification for the value.
-            name: Local name of the descriptor within its category.
-            description: Optional human-readable description.
+    ) -> None:
+        """
+        Initialize the descriptor with validation and identity.
+
+        Parameters
+        ----------
+        value_spec : AttributeSpec
+            Validation specification for the value.
+        name : str
+            Local name of the descriptor within its category.
+        description : str, default=None
+            Optional human-readable description.
         """
         super().__init__()
 
@@ -98,6 +98,7 @@ def __init__(
         self._value = default() if callable(default) else default
 
     def __str__(self) -> str:
+        """Return the string representation of this descriptor."""
         return f'<{self.unique_name} = {self.value!r}>'
 
     @property
@@ -106,11 +107,8 @@ def name(self) -> str:
         return self._name
 
     @property
-    def unique_name(self):
-        """Fully qualified name including datablock, category and entry
-        name.
-        """
-        # 7c: Use filter(None, [...])
+    def unique_name(self) -> str:
+        """Fully qualified name: datablock, category and entry."""
         parts = [
             self._identity.datablock_entry_name,
             self._identity.category_code,
@@ -119,10 +117,8 @@ def unique_name(self):
         ]
         return '.'.join(filter(None, parts))
 
-    def _parent_of_type(self, cls):
-        """Walk up the parent chain and return the first parent of type
-        `cls`.
-        """
+    def _parent_of_type(self, cls: type) -> object | None:
+        """Traverse parents and return the first of type cls."""
         obj = getattr(self, '_parent', None)
         visited = set()
         while obj is not None and id(obj) not in visited:
@@ -132,19 +128,19 @@ def _parent_of_type(self, cls):
             obj = getattr(obj, '_parent', None)
         return None
 
-    def _datablock_item(self):
+    def _datablock_item(self) -> object | None:
         """Return the DatablockItem ancestor, if any."""
         from easydiffraction.core.datablock import DatablockItem
 
         return self._parent_of_type(DatablockItem)
 
     @property
-    def value(self):
+    def value(self) -> object:
         """Current validated value."""
         return self._value
 
     @value.setter
-    def value(self, v):
+    def value(self, v: object) -> None:
         """Set a new value after validating against the spec."""
         # Do nothing if the value is unchanged
         if self._value == v:
@@ -163,19 +159,20 @@ def value(self, v):
         if parent_datablock is not None:
             parent_datablock._need_categories_update = True
 
-    def _set_value_from_minimizer(self, v) -> None:
-        """Set the value from a minimizer, bypassing validation.
+    def _set_value_from_minimizer(self, v: object) -> None:
+        """
+        Set the value from a minimizer, bypassing validation.
 
-        Writes ``_value`` directly — no type or range checks — but
-        still marks the owning :class:`DatablockItem` dirty so that
+        Writes ``_value`` directly — no type or range checks — but still
+        marks the owning :class:`DatablockItem` dirty so that
         ``_update_categories()`` knows work is needed.
 
         This exists because:
 
         1. Physical-range validators (e.g. intensity ≥ 0) would reject
-           trial values the minimizer needs to explore.
-        2. Validation overhead is measurable over thousands of
-           objective-function evaluations.
+        trial values the minimizer needs to explore. 2. Validation
+        overhead is measurable over thousands of    objective-function
+        evaluations.
         """
         self._value = v
         parent_datablock = self._datablock_item()
@@ -183,13 +180,14 @@ def _set_value_from_minimizer(self, v) -> None:
             parent_datablock._need_categories_update = True
 
     @property
-    def description(self):
+    def description(self) -> str | None:
         """Optional human-readable description."""
         return self._description
 
     @property
-    def parameters(self):
-        """Return a flat list of parameters contained by this object.
+    def parameters(self) -> list[GenericDescriptorBase]:
+        """
+        Return a flat list of parameters contained by this object.
 
         For a single descriptor, it returns a one-element list with
         itself. Composite objects override this to flatten nested
@@ -202,7 +200,7 @@ def as_cif(self) -> str:
         """Serialize this descriptor to a CIF-formatted string."""
         return param_to_cif(self)
 
-    def from_cif(self, block, idx=0):
+    def from_cif(self, block: object, idx: int = 0) -> None:
         """Populate this parameter from a CIF block."""
         param_from_cif(self, block, idx)
 
@@ -211,11 +209,13 @@ def from_cif(self, block, idx=0):
 
 
 class GenericStringDescriptor(GenericDescriptorBase):
+    """Base descriptor that constrains values to strings."""
+
     _value_type = DataTypes.STRING
 
     def __init__(
         self,
-        **kwargs: Any,
+        **kwargs: object,
     ) -> None:
         super().__init__(**kwargs)
 
@@ -224,18 +224,21 @@ def __init__(
 
 
 class GenericNumericDescriptor(GenericDescriptorBase):
+    """Base descriptor that constrains values to numbers."""
+
     _value_type = DataTypes.NUMERIC
 
     def __init__(
         self,
         *,
         units: str = '',
-        **kwargs: Any,
+        **kwargs: object,
     ) -> None:
         super().__init__(**kwargs)
         self._units: str = units
 
     def __str__(self) -> str:
+        """Return the string representation including units."""
         s: str = super().__str__()
         s = s[1:-1]  # strip <>
         if self.units:
@@ -252,7 +255,8 @@ def units(self) -> str:
 
 
 class GenericParameter(GenericNumericDescriptor):
-    """Numeric descriptor extended with fitting-related attributes.
+    """
+    Numeric descriptor extended with fitting-related attributes.
 
     Adds standard attributes used by minimizers: "free" flag,
     uncertainty, bounds and an optional starting value. Subclasses can
@@ -261,8 +265,8 @@ class GenericParameter(GenericNumericDescriptor):
 
     def __init__(
         self,
-        **kwargs: Any,
-    ):
+        **kwargs: object,
+    ) -> None:
         super().__init__(**kwargs)
 
         # Initial validated states
@@ -287,6 +291,7 @@ def __init__(
         UidMapHandler.get().add_to_uid_map(self)
 
     def __str__(self) -> str:
+        """Return string representation with uncertainty and free."""
         s = GenericDescriptorBase.__str__(self)
         s = s[1:-1]  # strip <>
         if self.uncertainty is not None:
@@ -302,23 +307,24 @@ def _generate_uid(length: int = 16) -> str:
         return ''.join(secrets.choice(letters) for _ in range(length))
 
     @property
-    def uid(self):
+    def uid(self) -> str:
         """Stable random identifier for this descriptor."""
         return self._uid
 
     @property
-    def _minimizer_uid(self):
+    def _minimizer_uid(self) -> str:
         """Variant of uid that is safe for minimizer engines."""
         # return self.unique_name.replace('.', '__')
         return self.uid
 
     @property
-    def constrained(self):
+    def constrained(self) -> bool:
         """Whether this parameter is part of a constraint expression."""
         return self._constrained
 
-    def _set_value_constrained(self, v) -> None:
-        """Set the value from a constraint expression.
+    def _set_value_constrained(self, v: object) -> None:
+        """
+        Set the value from a constraint expression.
 
         Validates against the spec, marks the parent datablock dirty,
         and flags the parameter as constrained. Used exclusively by
@@ -328,50 +334,48 @@ def _set_value_constrained(self, v) -> None:
         self._constrained = True
 
     @property
-    def free(self):
+    def free(self) -> bool:
         """Whether this parameter is currently varied during fitting."""
         return self._free
 
     @free.setter
-    def free(self, v):
+    def free(self, v: bool) -> None:
         """Set the "free" flag after validation."""
         self._free = self._free_spec.validated(
             v, name=f'{self.unique_name}.free', current=self._free
         )
 
     @property
-    def uncertainty(self):
-        """Estimated standard uncertainty of the fitted value, if
-        available.
-        """
+    def uncertainty(self) -> float | None:
+        """Estimated standard uncertainty of the fitted value."""
         return self._uncertainty
 
     @uncertainty.setter
-    def uncertainty(self, v):
+    def uncertainty(self, v: float | None) -> None:
         """Set the uncertainty value (must be non-negative or None)."""
         self._uncertainty = self._uncertainty_spec.validated(
             v, name=f'{self.unique_name}.uncertainty', current=self._uncertainty
         )
 
     @property
-    def fit_min(self):
+    def fit_min(self) -> float:
         """Lower fitting bound."""
         return self._fit_min
 
     @fit_min.setter
-    def fit_min(self, v):
+    def fit_min(self, v: float) -> None:
         """Set the lower bound for the parameter value."""
         self._fit_min = self._fit_min_spec.validated(
             v, name=f'{self.unique_name}.fit_min', current=self._fit_min
         )
 
     @property
-    def fit_max(self):
+    def fit_max(self) -> float:
         """Upper fitting bound."""
         return self._fit_max
 
     @fit_max.setter
-    def fit_max(self, v):
+    def fit_max(self, v: float) -> None:
         """Set the upper bound for the parameter value."""
         self._fit_max = self._fit_max_spec.validated(
             v, name=f'{self.unique_name}.fit_max', current=self._fit_max
@@ -382,17 +386,23 @@ def fit_max(self, v):
 
 
 class StringDescriptor(GenericStringDescriptor):
+    """String descriptor bound to a CIF handler."""
+
     def __init__(
         self,
         *,
         cif_handler: CifHandler,
-        **kwargs: Any,
+        **kwargs: object,
     ) -> None:
-        """String descriptor bound to a CIF handler.
-
-        Args:
-            cif_handler: Object that tracks CIF identifiers.
-            **kwargs: Forwarded to GenericStringDescriptor.
+        """
+        Initialize a string descriptor bound to a CIF handler.
+
+        Parameters
+        ----------
+        cif_handler : CifHandler
+            Object that tracks CIF identifiers.
+        **kwargs : object
+            Forwarded to GenericStringDescriptor.
         """
         super().__init__(**kwargs)
         self._cif_handler = cif_handler
@@ -403,17 +413,23 @@ def __init__(
 
 
 class NumericDescriptor(GenericNumericDescriptor):
+    """Numeric descriptor bound to a CIF handler."""
+
     def __init__(
         self,
         *,
         cif_handler: CifHandler,
-        **kwargs: Any,
+        **kwargs: object,
     ) -> None:
-        """Numeric descriptor bound to a CIF handler.
-
-        Args:
-            cif_handler: Object that tracks CIF identifiers.
-            **kwargs: Forwarded to GenericNumericDescriptor.
+        """
+        Numeric descriptor bound to a CIF handler.
+
+        Parameters
+        ----------
+        cif_handler : CifHandler
+            Object that tracks CIF identifiers.
+        **kwargs : object
+            Forwarded to GenericNumericDescriptor.
         """
         super().__init__(**kwargs)
         self._cif_handler = cif_handler
@@ -424,17 +440,23 @@ def __init__(
 
 
 class Parameter(GenericParameter):
+    """Fittable parameter bound to a CIF handler."""
+
     def __init__(
         self,
         *,
         cif_handler: CifHandler,
-        **kwargs: Any,
+        **kwargs: object,
     ) -> None:
-        """Fittable parameter bound to a CIF handler.
-
-        Args:
-            cif_handler: Object that tracks CIF identifiers.
-            **kwargs: Forwarded to GenericParameter.
+        """
+        Fittable parameter bound to a CIF handler.
+
+        Parameters
+        ----------
+        cif_handler : CifHandler
+            Object that tracks CIF identifiers.
+        **kwargs : object
+            Forwarded to GenericParameter.
         """
         super().__init__(**kwargs)
         self._cif_handler = cif_handler
diff --git a/src/easydiffraction/crystallography/__init__.py b/src/easydiffraction/crystallography/__init__.py
index 429f2648..4e798e20 100644
--- a/src/easydiffraction/crystallography/__init__.py
+++ b/src/easydiffraction/crystallography/__init__.py
@@ -1,2 +1,2 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
diff --git a/src/easydiffraction/crystallography/crystallography.py b/src/easydiffraction/crystallography/crystallography.py
index c7ff6203..bc90383f 100644
--- a/src/easydiffraction/crystallography/crystallography.py
+++ b/src/easydiffraction/crystallography/crystallography.py
@@ -1,4 +1,4 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2025 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 
 from typing import Any
@@ -21,14 +21,19 @@ def apply_cell_symmetry_constraints(
     cell: Dict[str, float],
     name_hm: str,
 ) -> Dict[str, float]:
-    """Apply symmetry constraints to unit cell parameters based on space
-    group.
-
-    Args:
-        cell: Dictionary containing lattice parameters.
-        name_hm: Hermann-Mauguin symbol of the space group.
-
-    Returns:
+    """
+    Apply symmetry constraints to unit cell parameters.
+
+    Parameters
+    ----------
+    cell : Dict[str, float]
+        Dictionary containing lattice parameters.
+    name_hm : str
+        Hermann-Mauguin symbol of the space group.
+
+    Returns
+    -------
+    Dict[str, float]
         The cell dictionary with applied symmetry constraints.
     """
     it_number = get_it_number_by_name_hm_short(name_hm)
@@ -90,16 +95,23 @@ def apply_atom_site_symmetry_constraints(
     coord_code: int,
     wyckoff_letter: str,
 ) -> Dict[str, Any]:
-    """Apply symmetry constraints to atomic coordinates based on site
-    symmetry.
-
-    Args:
-        atom_site: Dictionary containing atom position data.
-        name_hm: Hermann-Mauguin symbol of the space group.
-        coord_code: Coordinate system code.
-        wyckoff_letter: Wyckoff position letter.
-
-    Returns:
+    """
+    Apply symmetry constraints to atom site coordinates.
+
+    Parameters
+    ----------
+    atom_site : Dict[str, Any]
+        Dictionary containing atom position data.
+    name_hm : str
+        Hermann-Mauguin symbol of the space group.
+    coord_code : int
+        Coordinate system code.
+    wyckoff_letter : str
+        Wyckoff position letter.
+
+    Returns
+    -------
+    Dict[str, Any]
         The atom_site dictionary with applied symmetry constraints.
     """
     it_number = get_it_number_by_name_hm_short(name_hm)
diff --git a/src/easydiffraction/crystallography/space_groups.py b/src/easydiffraction/crystallography/space_groups.py
index 114b3467..4047b8c5 100644
--- a/src/easydiffraction/crystallography/space_groups.py
+++ b/src/easydiffraction/crystallography/space_groups.py
@@ -1,6 +1,7 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2025 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
-"""Space group reference data.
+"""
+Space group reference data.
 
 Loads a gzipped, packaged pickle with crystallographic space-group
 information. The file is part of the distribution; user input is not
@@ -10,11 +11,11 @@
 import gzip
 import pickle  # noqa: S403 - trusted internal pickle file (package data only)
 from pathlib import Path
-from typing import Any
 
 
-def _restricted_pickle_load(file_obj) -> Any:
-    """Load pickle data from an internal gz file (trusted boundary).
+def _restricted_pickle_load(file_obj: object) -> object:
+    """
+    Load pickle data from an internal gz file (trusted boundary).
 
     The archive lives in the package; no user-controlled input enters
     this function. If distribution process changes, revisit.
@@ -23,7 +24,7 @@ def _restricted_pickle_load(file_obj) -> Any:
     return data
 
 
-def _load():
+def _load() -> object:
     """Load space-group data from the packaged archive."""
     path = Path(__file__).with_name('space_groups.pkl.gz')
     with gzip.open(path, 'rb') as f:
diff --git a/src/easydiffraction/datablocks/__init__.py b/src/easydiffraction/datablocks/__init__.py
index 429f2648..4e798e20 100644
--- a/src/easydiffraction/datablocks/__init__.py
+++ b/src/easydiffraction/datablocks/__init__.py
@@ -1,2 +1,2 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
diff --git a/src/easydiffraction/datablocks/experiment/__init__.py b/src/easydiffraction/datablocks/experiment/__init__.py
index 429f2648..4e798e20 100644
--- a/src/easydiffraction/datablocks/experiment/__init__.py
+++ b/src/easydiffraction/datablocks/experiment/__init__.py
@@ -1,2 +1,2 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
diff --git a/src/easydiffraction/datablocks/experiment/categories/__init__.py b/src/easydiffraction/datablocks/experiment/categories/__init__.py
index 429f2648..4e798e20 100644
--- a/src/easydiffraction/datablocks/experiment/categories/__init__.py
+++ b/src/easydiffraction/datablocks/experiment/categories/__init__.py
@@ -1,2 +1,2 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
diff --git a/src/easydiffraction/datablocks/experiment/categories/background/__init__.py b/src/easydiffraction/datablocks/experiment/categories/background/__init__.py
index b7b3b47d..7ffe8f22 100644
--- a/src/easydiffraction/datablocks/experiment/categories/background/__init__.py
+++ b/src/easydiffraction/datablocks/experiment/categories/background/__init__.py
@@ -1,4 +1,4 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 
 from easydiffraction.datablocks.experiment.categories.background.chebyshev import (
diff --git a/src/easydiffraction/datablocks/experiment/categories/background/base.py b/src/easydiffraction/datablocks/experiment/categories/background/base.py
index 78cc5ef1..913cb764 100644
--- a/src/easydiffraction/datablocks/experiment/categories/background/base.py
+++ b/src/easydiffraction/datablocks/experiment/categories/background/base.py
@@ -1,4 +1,4 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 
 from __future__ import annotations
@@ -9,7 +9,8 @@
 
 
 class BackgroundBase(CategoryCollection):
-    """Abstract base for background subcategories in experiments.
+    """
+    Abstract base for background subcategories in experiments.
 
     Concrete implementations provide parameterized background models and
     compute background intensities on the experiment grid.
diff --git a/src/easydiffraction/datablocks/experiment/categories/background/chebyshev.py b/src/easydiffraction/datablocks/experiment/categories/background/chebyshev.py
index 4a6a714d..098c4268 100644
--- a/src/easydiffraction/datablocks/experiment/categories/background/chebyshev.py
+++ b/src/easydiffraction/datablocks/experiment/categories/background/chebyshev.py
@@ -1,6 +1,7 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
-"""Chebyshev polynomial background model.
+"""
+Chebyshev polynomial background model.
 
 Provides a collection of polynomial terms and evaluation helpers.
 """
@@ -34,7 +35,8 @@
 
 
 class PolynomialTerm(CategoryItem):
-    """Chebyshev polynomial term.
+    """
+    Chebyshev polynomial term.
 
     New public attribute names: ``order`` and ``coef`` replacing the
     longer ``chebyshev_order`` / ``chebyshev_coef``. Backward-compatible
@@ -47,7 +49,7 @@ def __init__(self) -> None:
 
         self._id = StringDescriptor(
             name='id',
-            description='Identifier for this background polynomial term.',
+            description='Identifier for this background polynomial term',
             value_spec=AttributeSpec(
                 default='0',
                 # TODO: the following pattern is valid for dict key
@@ -84,32 +86,54 @@ def __init__(self) -> None:
     # ------------------------------------------------------------------
 
     @property
-    def id(self):
+    def id(self) -> StringDescriptor:
+        """
+        Identifier for this background polynomial term.
+
+        Reading this property returns the underlying
+        ``StringDescriptor`` object. Assigning to it updates the
+        parameter value.
+        """
         return self._id
 
     @id.setter
-    def id(self, value):
+    def id(self, value: str) -> None:
         self._id.value = value
 
     @property
-    def order(self):
+    def order(self) -> NumericDescriptor:
+        """
+        Order used in a Chebyshev polynomial background term.
+
+        Reading this property returns the underlying
+        ``NumericDescriptor`` object. Assigning to it updates the
+        parameter value.
+        """
         return self._order
 
     @order.setter
-    def order(self, value):
+    def order(self, value: float) -> None:
         self._order.value = value
 
     @property
-    def coef(self):
+    def coef(self) -> Parameter:
+        """
+        Coefficient used in a Chebyshev polynomial background term.
+
+        Reading this property returns the underlying ``Parameter``
+        object. Assigning to it updates the parameter value.
+        """
         return self._coef
 
     @coef.setter
-    def coef(self, value):
+    def coef(self, value: float) -> None:
         self._coef.value = value
 
 
 @BackgroundFactory.register
 class ChebyshevPolynomialBackground(BackgroundBase):
+    """Chebyshev polynomial background model."""
+
     type_info = TypeInfo(
         tag='chebyshev',
         description='Chebyshev polynomial background',
@@ -127,10 +151,10 @@ class ChebyshevPolynomialBackground(BackgroundBase):
         }),
     )
 
-    def __init__(self):
+    def __init__(self) -> None:
         super().__init__(item_type=PolynomialTerm)
 
-    def _update(self, called_by_minimizer=False):
+    def _update(self, called_by_minimizer: bool = False) -> None:
         """Evaluate polynomial background over x data."""
         del called_by_minimizer
 
diff --git a/src/easydiffraction/datablocks/experiment/categories/background/enums.py b/src/easydiffraction/datablocks/experiment/categories/background/enums.py
index 2356702a..9e78effc 100644
--- a/src/easydiffraction/datablocks/experiment/categories/background/enums.py
+++ b/src/easydiffraction/datablocks/experiment/categories/background/enums.py
@@ -1,4 +1,4 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 """Enumerations for background model types."""
 
diff --git a/src/easydiffraction/datablocks/experiment/categories/background/factory.py b/src/easydiffraction/datablocks/experiment/categories/background/factory.py
index c52b7dd7..c4d300c8 100644
--- a/src/easydiffraction/datablocks/experiment/categories/background/factory.py
+++ b/src/easydiffraction/datablocks/experiment/categories/background/factory.py
@@ -1,4 +1,4 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 """Background factory — delegates entirely to ``FactoryBase``."""
 
diff --git a/src/easydiffraction/datablocks/experiment/categories/background/line_segment.py b/src/easydiffraction/datablocks/experiment/categories/background/line_segment.py
index 822f6e0d..2f0a5496 100644
--- a/src/easydiffraction/datablocks/experiment/categories/background/line_segment.py
+++ b/src/easydiffraction/datablocks/experiment/categories/background/line_segment.py
@@ -1,6 +1,7 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
-"""Line-segment background model.
+"""
+Line-segment background model.
 
 Interpolate user-specified points to form a background curve.
 """
@@ -40,7 +41,7 @@ def __init__(self) -> None:
 
         self._id = StringDescriptor(
             name='id',
-            description='Identifier for this background line segment.',
+            description='Identifier for this background line segment',
             value_spec=AttributeSpec(
                 default='0',
                 # TODO: the following pattern is valid for dict key
@@ -52,10 +53,7 @@ def __init__(self) -> None:
         )
         self._x = NumericDescriptor(
             name='x',
-            description=(
-                'X-coordinates used to create many straight-line segments '
-                'representing the background in a calculated diffractogram.'
-            ),
+            description='X-coordinates used to create many straight-line segments',
             value_spec=AttributeSpec(
                 default=0.0,
                 validator=RangeValidator(),
@@ -69,10 +67,7 @@ def __init__(self) -> None:
         )
         self._y = Parameter(
             name='y',  # TODO: rename to intensity
-            description=(
-                'Intensity used to create many straight-line segments '
-                'representing the background in a calculated diffractogram'
-            ),
+            description='Intensity used to create many straight-line segments',
             value_spec=AttributeSpec(
                 default=0.0,
                 validator=RangeValidator(),
@@ -93,32 +88,54 @@ def __init__(self) -> None:
     # ------------------------------------------------------------------
 
     @property
-    def id(self):
+    def id(self) -> StringDescriptor:
+        """
+        Identifier for this background line segment.
+
+        Reading this property returns the underlying
+        ``StringDescriptor`` object. Assigning to it updates the
+        parameter value.
+        """
         return self._id
 
     @id.setter
-    def id(self, value):
+    def id(self, value: str) -> None:
         self._id.value = value
 
     @property
-    def x(self):
+    def x(self) -> NumericDescriptor:
+        """
+        X-coordinates used to create many straight-line segments.
+
+        Reading this property returns the underlying
+        ``NumericDescriptor`` object. Assigning to it updates the
+        parameter value.
+        """
         return self._x
 
     @x.setter
-    def x(self, value):
+    def x(self, value: float) -> None:
         self._x.value = value
 
     @property
-    def y(self):
+    def y(self) -> Parameter:
+        """
+        Intensity used to create many straight-line segments.
+
+        Reading this property returns the underlying ``Parameter``
+        object. Assigning to it updates the parameter value.
+        """
         return self._y
 
     @y.setter
-    def y(self, value):
+    def y(self, value: float) -> None:
         self._y.value = value
 
 
 @BackgroundFactory.register
 class LineSegmentBackground(BackgroundBase):
+    """Linear-interpolation background between user-defined points."""
+
     type_info = TypeInfo(
         tag='line-segment',
         description='Linear interpolation between points',
@@ -130,10 +147,10 @@ class LineSegmentBackground(BackgroundBase):
         calculators=frozenset({CalculatorEnum.CRYSPY, CalculatorEnum.CRYSFML}),
     )
 
-    def __init__(self):
+    def __init__(self) -> None:
         super().__init__(item_type=LineSegment)
 
-    def _update(self, called_by_minimizer=False):
+    def _update(self, called_by_minimizer: bool = False) -> None:
         """Interpolate background points over x data."""
         del called_by_minimizer
 
diff --git a/src/easydiffraction/datablocks/experiment/categories/data/__init__.py b/src/easydiffraction/datablocks/experiment/categories/data/__init__.py
index c228ecd8..3599f3b5 100644
--- a/src/easydiffraction/datablocks/experiment/categories/data/__init__.py
+++ b/src/easydiffraction/datablocks/experiment/categories/data/__init__.py
@@ -1,4 +1,4 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 
 from easydiffraction.datablocks.experiment.categories.data.bragg_pd import PdCwlData
diff --git a/src/easydiffraction/datablocks/experiment/categories/data/bragg_pd.py b/src/easydiffraction/datablocks/experiment/categories/data/bragg_pd.py
index 73402d30..883f7f80 100644
--- a/src/easydiffraction/datablocks/experiment/categories/data/bragg_pd.py
+++ b/src/easydiffraction/datablocks/experiment/categories/data/bragg_pd.py
@@ -1,4 +1,4 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 
 from __future__ import annotations
@@ -29,12 +29,12 @@
 class PdDataPointBaseMixin:
     """Single base data point mixin for powder diffraction data."""
 
-    def __init__(self):
+    def __init__(self) -> None:
         super().__init__()
 
         self._point_id = StringDescriptor(
             name='point_id',
-            description='Identifier for this data point in the dataset.',
+            description='Identifier for this data point in the dataset',
             value_spec=AttributeSpec(
                 default='0',
                 # TODO: the following pattern is valid for dict key
@@ -50,7 +50,7 @@ def __init__(self):
         )
         self._d_spacing = NumericDescriptor(
             name='d_spacing',
-            description='d-spacing value corresponding to this data point.',
+            description='d-spacing value corresponding to this data point',
             value_spec=AttributeSpec(
                 default=0.0,
                 validator=RangeValidator(ge=0),
@@ -59,7 +59,7 @@ def __init__(self):
         )
         self._intensity_meas = NumericDescriptor(
             name='intensity_meas',
-            description='Intensity recorded at each measurement point as a function of angle/time',
+            description='Intensity recorded at each measurement point (angle/time)',
             value_spec=AttributeSpec(
                 default=0.0,
                 validator=RangeValidator(ge=0),
@@ -73,7 +73,7 @@ def __init__(self):
         )
         self._intensity_meas_su = NumericDescriptor(
             name='intensity_meas_su',
-            description='Standard uncertainty of the measured intensity at this data point.',
+            description='Standard uncertainty of the measured intensity at this point',
             value_spec=AttributeSpec(
                 default=1.0,
                 validator=RangeValidator(ge=0),
@@ -87,7 +87,7 @@ def __init__(self):
         )
         self._intensity_calc = NumericDescriptor(
             name='intensity_calc',
-            description='Intensity value for a computed diffractogram at this data point.',
+            description='Intensity of a computed diffractogram at this point',
             value_spec=AttributeSpec(
                 default=0.0,
                 validator=RangeValidator(ge=0),
@@ -96,7 +96,7 @@ def __init__(self):
         )
         self._intensity_bkg = NumericDescriptor(
             name='intensity_bkg',
-            description='Intensity value for a computed background at this data point.',
+            description='Intensity of a computed background at this point',
             value_spec=AttributeSpec(
                 default=0.0,
                 validator=RangeValidator(ge=0),
@@ -105,7 +105,7 @@ def __init__(self):
         )
         self._calc_status = StringDescriptor(
             name='calc_status',
-            description='Status code of the data point in the calculation process.',
+            description='Status code of the data point in the calculation process',
             value_spec=AttributeSpec(
                 default='incl',  # TODO: Make Enum
                 validator=MembershipValidator(allowed=['incl', 'excl']),
@@ -123,39 +123,79 @@ def __init__(self):
 
     @property
     def point_id(self) -> StringDescriptor:
+        """
+        Identifier for this data point in the dataset.
+
+        Reading this property returns the underlying
+        ``StringDescriptor`` object.
+        """
         return self._point_id
 
     @property
     def d_spacing(self) -> NumericDescriptor:
+        """
+        d-spacing value corresponding to this data point.
+
+        Reading this property returns the underlying
+        ``NumericDescriptor`` object.
+        """
         return self._d_spacing
 
     @property
     def intensity_meas(self) -> NumericDescriptor:
+        """
+        Intensity recorded at each measurement point (angle/time).
+
+        Reading this property returns the underlying
+        ``NumericDescriptor`` object.
+        """
         return self._intensity_meas
 
     @property
     def intensity_meas_su(self) -> NumericDescriptor:
+        """
+        Standard uncertainty of the measured intensity at this point.
+
+        Reading this property returns the underlying
+        ``NumericDescriptor`` object.
+        """
         return self._intensity_meas_su
 
     @property
     def intensity_calc(self) -> NumericDescriptor:
+        """
+        Intensity of a computed diffractogram at this point.
+
+        Reading this property returns the underlying
+        ``NumericDescriptor`` object.
+        """
         return self._intensity_calc
 
     @property
     def intensity_bkg(self) -> NumericDescriptor:
+        """
+        Intensity of a computed background at this point.
+
+        Reading this property returns the underlying
+        ``NumericDescriptor`` object.
+        """
         return self._intensity_bkg
 
     @property
     def calc_status(self) -> StringDescriptor:
+        """
+        Status code of the data point in the calculation process.
+
+        Reading this property returns the underlying
+        ``StringDescriptor`` object.
+        """
         return self._calc_status
 
 
 class PdCwlDataPointMixin:
-    """Mixin for powder diffraction data points with constant
-    wavelength.
-    """
+    """Mixin for CWL powder diffraction data points."""
 
-    def __init__(self):
+    def __init__(self) -> None:
         super().__init__()
 
         self._two_theta = NumericDescriptor(
@@ -179,14 +219,20 @@ def __init__(self):
     # ------------------------------------------------------------------
 
     @property
-    def two_theta(self):
+    def two_theta(self) -> NumericDescriptor:
+        """
+        Measured 2θ diffraction angle (deg).
+
+        Reading this property returns the underlying
+        ``NumericDescriptor`` object.
+        """
         return self._two_theta
 
 
 class PdTofDataPointMixin:
     """Mixin for powder diffraction data points with time-of-flight."""
 
-    def __init__(self):
+    def __init__(self) -> None:
         super().__init__()
 
         self._time_of_flight = NumericDescriptor(
@@ -205,7 +251,13 @@ def __init__(self):
     # ------------------------------------------------------------------
 
     @property
-    def time_of_flight(self):
+    def time_of_flight(self) -> NumericDescriptor:
+        """
+        Measured time for time-of-flight neutron measurement (µs).
+
+        Reading this property returns the underlying
+        ``NumericDescriptor`` object.
+        """
         return self._time_of_flight
 
 
@@ -222,9 +274,7 @@ class PdCwlDataPoint(
     #  But also says, that in fact, it is just for consistency. And both
     #  orders work.
 ):
-    """Powder diffraction data point for constant-wavelength
-    experiments.
-    """
+    """Powder diffraction data point for CWL experiments."""
 
     def __init__(self) -> None:
         super().__init__()
@@ -246,6 +296,8 @@ def __init__(self) -> None:
 
 
 class PdDataBase(CategoryCollection):
+    """Base class for powder diffraction data collections."""
+
     # TODO: ???
 
     # Redefine update priority to ensure data updated after other
@@ -260,42 +312,40 @@ class PdDataBase(CategoryCollection):
 
     # Should be set only once
 
-    def _set_point_id(self, values) -> None:
-        """Helper method to set point IDs."""
+    def _set_point_id(self, values: object) -> None:
+        """Set point IDs."""
         for p, v in zip(self._items, values, strict=True):
             p.point_id._value = v
 
-    def _set_intensity_meas(self, values) -> None:
-        """Helper method to set measured intensity."""
+    def _set_intensity_meas(self, values: object) -> None:
+        """Set measured intensity."""
         for p, v in zip(self._items, values, strict=True):
             p.intensity_meas._value = v
 
-    def _set_intensity_meas_su(self, values) -> None:
-        """Helper method to set standard uncertainty of measured
-        intensity.
-        """
+    def _set_intensity_meas_su(self, values: object) -> None:
+        """Set standard uncertainty of measured intensity values."""
         for p, v in zip(self._items, values, strict=True):
             p.intensity_meas_su._value = v
 
     # Can be set multiple times
 
-    def _set_d_spacing(self, values) -> None:
-        """Helper method to set d-spacing values."""
+    def _set_d_spacing(self, values: object) -> None:
+        """Set d-spacing values."""
         for p, v in zip(self._calc_items, values, strict=True):
             p.d_spacing._value = v
 
-    def _set_intensity_calc(self, values) -> None:
-        """Helper method to set calculated intensity."""
+    def _set_intensity_calc(self, values: object) -> None:
+        """Set calculated intensity."""
         for p, v in zip(self._calc_items, values, strict=True):
             p.intensity_calc._value = v
 
-    def _set_intensity_bkg(self, values) -> None:
-        """Helper method to set background intensity."""
+    def _set_intensity_bkg(self, values: object) -> None:
+        """Set background intensity."""
         for p, v in zip(self._calc_items, values, strict=True):
             p.intensity_bkg._value = v
 
-    def _set_calc_status(self, values) -> None:
-        """Helper method to set refinement status."""
+    def _set_calc_status(self, values: object) -> None:
+        """Set refinement status."""
         for p, v in zip(self._items, values, strict=True):
             if v:
                 p.calc_status._value = 'incl'
@@ -311,13 +361,13 @@ def _calc_mask(self) -> np.ndarray:
         return self.calc_status == 'incl'
 
     @property
-    def _calc_items(self):
+    def _calc_items(self) -> list:
         """Get only the items included in calculations."""
         return [item for item, mask in zip(self._items, self._calc_mask, strict=False) if mask]
 
     # Misc
 
-    def _update(self, called_by_minimizer=False):
+    def _update(self, called_by_minimizer: bool = False) -> None:
         experiment = self._parent
         experiments = experiment._parent
         project = experiments._parent
@@ -353,6 +403,7 @@ def _update(self, called_by_minimizer=False):
 
     @property
     def calc_status(self) -> np.ndarray:
+        """Refinement-status flags for each data point as an array."""
         return np.fromiter(
             (p.calc_status.value for p in self._items),
             dtype=object,  # TODO: needed? DataTypes.NUMERIC?
@@ -360,6 +411,7 @@ def calc_status(self) -> np.ndarray:
 
     @property
     def d_spacing(self) -> np.ndarray:
+        """D-spacing values for active (non-excluded) data points."""
         return np.fromiter(
             (p.d_spacing.value for p in self._calc_items),
             dtype=float,  # TODO: needed? DataTypes.NUMERIC?
@@ -367,6 +419,7 @@ def d_spacing(self) -> np.ndarray:
 
     @property
     def intensity_meas(self) -> np.ndarray:
+        """Measured intensities for active data points."""
         return np.fromiter(
             (p.intensity_meas.value for p in self._calc_items),
             dtype=float,  # TODO: needed? DataTypes.NUMERIC?
@@ -374,6 +427,12 @@ def intensity_meas(self) -> np.ndarray:
 
     @property
     def intensity_meas_su(self) -> np.ndarray:
+        """
+        Standard uncertainties of the measured intensities.
+
+        Values smaller than 0.0001 are replaced with 1.0 to prevent
+        fitting failures.
+        """
         # TODO: The following is a temporary workaround to handle zero
         #  or near-zero uncertainties in the data, when dats is loaded
         #  from CIF files. This is necessary because zero uncertainties
@@ -396,6 +455,7 @@ def intensity_meas_su(self) -> np.ndarray:
 
     @property
     def intensity_calc(self) -> np.ndarray:
+        """Calculated intensities for active data points."""
         return np.fromiter(
             (p.intensity_calc.value for p in self._calc_items),
             dtype=float,  # TODO: needed? DataTypes.NUMERIC?
@@ -403,6 +463,7 @@ def intensity_calc(self) -> np.ndarray:
 
     @property
     def intensity_bkg(self) -> np.ndarray:
+        """Background intensities for active data points."""
         return np.fromiter(
             (p.intensity_bkg.value for p in self._calc_items),
             dtype=float,  # TODO: needed? DataTypes.NUMERIC?
@@ -411,6 +472,8 @@ def intensity_bkg(self) -> np.ndarray:
 
 @DataFactory.register
 class PdCwlData(PdDataBase):
+    """Bragg powder CWL data collection."""
+
     # TODO: ???
     # _description: str = 'Powder diffraction data points for
     # constant-wavelength experiments.'
@@ -424,7 +487,7 @@ class PdCwlData(PdDataBase):
         calculators=frozenset({CalculatorEnum.CRYSPY}),
     )
 
-    def __init__(self):
+    def __init__(self) -> None:
         super().__init__(item_type=PdCwlDataPoint)
 
     #################
@@ -433,8 +496,8 @@ def __init__(self):
 
     # Should be set only once
 
-    def _create_items_set_xcoord_and_id(self, values) -> None:
-        """Helper method to set 2θ values."""
+    def _create_items_set_xcoord_and_id(self, values: object) -> None:
+        """Set 2θ values."""
         # TODO: split into multiple methods
 
         # Create items
@@ -449,7 +512,7 @@ def _create_items_set_xcoord_and_id(self, values) -> None:
 
     # Misc
 
-    def _update(self, called_by_minimizer=False):
+    def _update(self, called_by_minimizer: bool = False) -> None:
         super()._update(called_by_minimizer)
 
         experiment = self._parent
@@ -465,9 +528,7 @@ def _update(self, called_by_minimizer=False):
 
     @property
     def two_theta(self) -> np.ndarray:
-        """Get the 2θ values for data points included in
-        calculations.
-        """
+        """Get 2θ values for data points included in calculations."""
         return np.fromiter(
             (p.two_theta.value for p in self._calc_items),
             dtype=float,  # TODO: needed? DataTypes.NUMERIC?
@@ -489,6 +550,8 @@ def unfiltered_x(self) -> np.ndarray:
 
 @DataFactory.register
 class PdTofData(PdDataBase):
+    """Bragg powder TOF data collection."""
+
     type_info = TypeInfo(tag='bragg-pd-tof', description='Bragg powder TOF data')
     compatibility = Compatibility(
         sample_form=frozenset({SampleFormEnum.POWDER}),
@@ -499,7 +562,7 @@ class PdTofData(PdDataBase):
         calculators=frozenset({CalculatorEnum.CRYSPY, CalculatorEnum.CRYSFML}),
     )
 
-    def __init__(self):
+    def __init__(self) -> None:
         super().__init__(item_type=PdTofDataPoint)
 
     #################
@@ -508,8 +571,8 @@ def __init__(self):
 
     # Should be set only once
 
-    def _create_items_set_xcoord_and_id(self, values) -> None:
-        """Helper method to set time-of-flight values."""
+    def _create_items_set_xcoord_and_id(self, values: object) -> None:
+        """Set time-of-flight values."""
         # TODO: split into multiple methods
 
         # Create items
@@ -524,7 +587,7 @@ def _create_items_set_xcoord_and_id(self, values) -> None:
 
     # Misc
 
-    def _update(self, called_by_minimizer=False):
+    def _update(self, called_by_minimizer: bool = False) -> None:
         super()._update(called_by_minimizer)
 
         experiment = self._parent
@@ -542,9 +605,7 @@ def _update(self, called_by_minimizer=False):
 
     @property
     def time_of_flight(self) -> np.ndarray:
-        """Get the TOF values for data points included in
-        calculations.
-        """
+        """Get TOF values for data points included in calculations."""
         return np.fromiter(
             (p.time_of_flight.value for p in self._calc_items),
             dtype=float,  # TODO: needed? DataTypes.NUMERIC?
diff --git a/src/easydiffraction/datablocks/experiment/categories/data/bragg_sc.py b/src/easydiffraction/datablocks/experiment/categories/data/bragg_sc.py
index 39552b63..d19eb75f 100644
--- a/src/easydiffraction/datablocks/experiment/categories/data/bragg_sc.py
+++ b/src/easydiffraction/datablocks/experiment/categories/data/bragg_sc.py
@@ -1,4 +1,4 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 
 from __future__ import annotations
@@ -26,16 +26,14 @@
 
 
 class Refln(CategoryItem):
-    """Single reflection for single crystal diffraction data
-    category.
-    """
+    """Single reflection for single-crystal diffraction data."""
 
     def __init__(self) -> None:
         super().__init__()
 
         self._id = StringDescriptor(
             name='id',
-            description='Identifier of the reflection.',
+            description='Identifier of the reflection',
             value_spec=AttributeSpec(
                 default='0',
                 # TODO: the following pattern is valid for dict key
@@ -47,7 +45,7 @@ def __init__(self) -> None:
         )
         self._d_spacing = NumericDescriptor(
             name='d_spacing',
-            description='The distance between lattice planes in the crystal for this reflection.',
+            description='Distance between lattice planes for this reflection',
             units='Å',
             value_spec=AttributeSpec(
                 default=0.0,
@@ -57,7 +55,7 @@ def __init__(self) -> None:
         )
         self._sin_theta_over_lambda = NumericDescriptor(
             name='sin_theta_over_lambda',
-            description='The sin(θ)/λ value for this reflection.',
+            description='The sin(θ)/λ value for this reflection',
             units='Å⁻¹',
             value_spec=AttributeSpec(
                 default=0.0,
@@ -67,7 +65,7 @@ def __init__(self) -> None:
         )
         self._index_h = NumericDescriptor(
             name='index_h',
-            description='Miller index h of a measured reflection.',
+            description='Miller index h of a measured reflection',
             value_spec=AttributeSpec(
                 default=0.0,
                 validator=RangeValidator(),
@@ -76,7 +74,7 @@ def __init__(self) -> None:
         )
         self._index_k = NumericDescriptor(
             name='index_k',
-            description='Miller index k of a measured reflection.',
+            description='Miller index k of a measured reflection',
             value_spec=AttributeSpec(
                 default=0.0,
                 validator=RangeValidator(),
@@ -85,7 +83,7 @@ def __init__(self) -> None:
         )
         self._index_l = NumericDescriptor(
             name='index_l',
-            description='Miller index l of a measured reflection.',
+            description='Miller index l of a measured reflection',
             value_spec=AttributeSpec(
                 default=0.0,
                 validator=RangeValidator(),
@@ -112,7 +110,7 @@ def __init__(self) -> None:
         )
         self._intensity_calc = NumericDescriptor(
             name='intensity_calc',
-            description='The intensity of the reflection calculated from the atom site data.',
+            description='Intensity of the reflection calculated from atom site data',
             value_spec=AttributeSpec(
                 default=0.0,
                 validator=RangeValidator(ge=0),
@@ -121,7 +119,7 @@ def __init__(self) -> None:
         )
         self._wavelength = NumericDescriptor(
             name='wavelength',
-            description='The mean wavelength of radiation used to measure this reflection.',
+            description='Mean wavelength of radiation for this reflection',
             units='Å',
             value_spec=AttributeSpec(
                 default=0.0,
@@ -139,42 +137,102 @@ def __init__(self) -> None:
 
     @property
     def id(self) -> StringDescriptor:
+        """
+        Identifier of the reflection.
+
+        Reading this property returns the underlying
+        ``StringDescriptor`` object.
+        """
         return self._id
 
     @property
     def d_spacing(self) -> NumericDescriptor:
+        """
+        Distance between lattice planes for this reflection (Å).
+
+        Reading this property returns the underlying
+        ``NumericDescriptor`` object.
+        """
         return self._d_spacing
 
     @property
     def sin_theta_over_lambda(self) -> NumericDescriptor:
+        """
+        The sin(θ)/λ value for this reflection (Å⁻¹).
+
+        Reading this property returns the underlying
+        ``NumericDescriptor`` object.
+        """
         return self._sin_theta_over_lambda
 
     @property
     def index_h(self) -> NumericDescriptor:
+        """
+        Miller index h of a measured reflection.
+
+        Reading this property returns the underlying
+        ``NumericDescriptor`` object.
+        """
         return self._index_h
 
     @property
     def index_k(self) -> NumericDescriptor:
+        """
+        Miller index k of a measured reflection.
+
+        Reading this property returns the underlying
+        ``NumericDescriptor`` object.
+        """
         return self._index_k
 
     @property
     def index_l(self) -> NumericDescriptor:
+        """
+        Miller index l of a measured reflection.
+
+        Reading this property returns the underlying
+        ``NumericDescriptor`` object.
+        """
         return self._index_l
 
     @property
     def intensity_meas(self) -> NumericDescriptor:
+        """
+        The intensity of the reflection derived from the measurements.
+
+        Reading this property returns the underlying
+        ``NumericDescriptor`` object.
+        """
         return self._intensity_meas
 
     @property
     def intensity_meas_su(self) -> NumericDescriptor:
+        """
+        Standard uncertainty of the measured intensity.
+
+        Reading this property returns the underlying
+        ``NumericDescriptor`` object.
+        """
         return self._intensity_meas_su
 
     @property
     def intensity_calc(self) -> NumericDescriptor:
+        """
+        Intensity of the reflection calculated from atom site data.
+
+        Reading this property returns the underlying
+        ``NumericDescriptor`` object.
+        """
         return self._intensity_calc
 
     @property
     def wavelength(self) -> NumericDescriptor:
+        """
+        Mean wavelength of radiation for this reflection (Å).
+
+        Reading this property returns the underlying
+        ``NumericDescriptor`` object.
+        """
         return self._wavelength
 
 
@@ -194,7 +252,7 @@ class ReflnData(CategoryCollection):
 
     _update_priority = 100
 
-    def __init__(self):
+    def __init__(self) -> None:
         super().__init__(item_type=Refln)
 
     #################
@@ -203,8 +261,13 @@ def __init__(self):
 
     # Should be set only once
 
-    def _create_items_set_hkl_and_id(self, indices_h, indices_k, indices_l) -> None:
-        """Helper method to set Miller indices."""
+    def _create_items_set_hkl_and_id(
+        self,
+        indices_h: object,
+        indices_k: object,
+        indices_l: object,
+    ) -> None:
+        """Set Miller indices."""
         # TODO: split into multiple methods
 
         # Create items
@@ -221,48 +284,46 @@ def _create_items_set_hkl_and_id(self, indices_h, indices_k, indices_l) -> None:
         # Set reflection IDs
         self._set_id([str(i + 1) for i in range(indices_h.size)])
 
-    def _set_id(self, values) -> None:
-        """Helper method to set reflection IDs."""
+    def _set_id(self, values: object) -> None:
+        """Set reflection IDs."""
         for p, v in zip(self._items, values, strict=True):
             p.id._value = v
 
-    def _set_intensity_meas(self, values) -> None:
-        """Helper method to set measured intensity."""
+    def _set_intensity_meas(self, values: object) -> None:
+        """Set measured intensity."""
         for p, v in zip(self._items, values, strict=True):
             p.intensity_meas._value = v
 
-    def _set_intensity_meas_su(self, values) -> None:
-        """Helper method to set standard uncertainty of measured
-        intensity.
-        """
+    def _set_intensity_meas_su(self, values: object) -> None:
+        """Set standard uncertainty of measured intensity values."""
         for p, v in zip(self._items, values, strict=True):
             p.intensity_meas_su._value = v
 
-    def _set_wavelength(self, values) -> None:
-        """Helper method to set wavelength."""
+    def _set_wavelength(self, values: object) -> None:
+        """Set wavelength."""
         for p, v in zip(self._items, values, strict=True):
             p.wavelength._value = v
 
     # Can be set multiple times
 
-    def _set_d_spacing(self, values) -> None:
-        """Helper method to set d-spacing values."""
+    def _set_d_spacing(self, values: object) -> None:
+        """Set d-spacing values."""
         for p, v in zip(self._items, values, strict=True):
             p.d_spacing._value = v
 
-    def _set_sin_theta_over_lambda(self, values) -> None:
-        """Helper method to set sin(theta)/lambda values."""
+    def _set_sin_theta_over_lambda(self, values: object) -> None:
+        """Set sin(theta)/lambda values."""
         for p, v in zip(self._items, values, strict=True):
             p.sin_theta_over_lambda._value = v
 
-    def _set_intensity_calc(self, values) -> None:
-        """Helper method to set calculated intensity."""
+    def _set_intensity_calc(self, values: object) -> None:
+        """Set calculated intensity."""
         for p, v in zip(self._items, values, strict=True):
             p.intensity_calc._value = v
 
     # Misc
 
-    def _update(self, called_by_minimizer=False):
+    def _update(self, called_by_minimizer: bool = False) -> None:
         experiment = self._parent
         experiments = experiment._parent
         project = experiments._parent
@@ -302,63 +363,72 @@ def _update(self, called_by_minimizer=False):
 
     @property
     def d_spacing(self) -> np.ndarray:
+        """D-spacing values for all reflection data points."""
         return np.fromiter(
             (p.d_spacing.value for p in self._items),
-            dtype=float,  # TODO: needed? DataTypes.NUMERIC?
+            dtype=float,
         )
 
     @property
     def sin_theta_over_lambda(self) -> np.ndarray:
+        """sinθ/λ values for all reflection data points."""
         return np.fromiter(
             (p.sin_theta_over_lambda.value for p in self._items),
-            dtype=float,  # TODO: needed? DataTypes.NUMERIC?
+            dtype=float,
         )
 
     @property
     def index_h(self) -> np.ndarray:
+        """Miller h indices for all reflection data points."""
         return np.fromiter(
             (p.index_h.value for p in self._items),
-            dtype=float,  # TODO: needed? DataTypes.NUMERIC?
+            dtype=float,
         )
 
     @property
     def index_k(self) -> np.ndarray:
+        """Miller k indices for all reflection data points."""
         return np.fromiter(
             (p.index_k.value for p in self._items),
-            dtype=float,  # TODO: needed? DataTypes.NUMERIC?
+            dtype=float,
         )
 
     @property
     def index_l(self) -> np.ndarray:
+        """Miller l indices for all reflection data points."""
         return np.fromiter(
             (p.index_l.value for p in self._items),
-            dtype=float,  # TODO: needed? DataTypes.NUMERIC?
+            dtype=float,
         )
 
     @property
     def intensity_meas(self) -> np.ndarray:
+        """Measured structure-factor intensities for all reflections."""
         return np.fromiter(
             (p.intensity_meas.value for p in self._items),
-            dtype=float,  # TODO: needed? DataTypes.NUMERIC?
+            dtype=float,
         )
 
     @property
     def intensity_meas_su(self) -> np.ndarray:
+        """Standard uncertainties of the measured intensities."""
         return np.fromiter(
             (p.intensity_meas_su.value for p in self._items),
-            dtype=float,  # TODO: needed? DataTypes.NUMERIC?
+            dtype=float,
         )
 
     @property
     def intensity_calc(self) -> np.ndarray:
+        """Calculated intensities for all reflections."""
         return np.fromiter(
             (p.intensity_calc.value for p in self._items),
-            dtype=float,  # TODO: needed? DataTypes.NUMERIC?
+            dtype=float,
         )
 
     @property
     def wavelength(self) -> np.ndarray:
+        """Wavelengths associated with each reflection."""
         return np.fromiter(
             (p.wavelength.value for p in self._items),
-            dtype=float,  # TODO: needed? DataTypes.NUMERIC?
+            dtype=float,
         )
diff --git a/src/easydiffraction/datablocks/experiment/categories/data/factory.py b/src/easydiffraction/datablocks/experiment/categories/data/factory.py
index 1ef25c0b..d8cdcf12 100644
--- a/src/easydiffraction/datablocks/experiment/categories/data/factory.py
+++ b/src/easydiffraction/datablocks/experiment/categories/data/factory.py
@@ -1,4 +1,4 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 """Data collection factory — delegates to ``FactoryBase``."""
 
diff --git a/src/easydiffraction/datablocks/experiment/categories/data/total_pd.py b/src/easydiffraction/datablocks/experiment/categories/data/total_pd.py
index 0aa63be5..c8d0aa9d 100644
--- a/src/easydiffraction/datablocks/experiment/categories/data/total_pd.py
+++ b/src/easydiffraction/datablocks/experiment/categories/data/total_pd.py
@@ -1,4 +1,4 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 """Data categories for total scattering (PDF) experiments."""
 
@@ -26,7 +26,8 @@
 
 
 class TotalDataPoint(CategoryItem):
-    """Total scattering (PDF) data point in r-space (real space).
+    """
+    Total scattering (PDF) data point in r-space (real space).
 
     Note: PDF data is always in r-space regardless of whether the
     original measurement was CWL or TOF.
@@ -37,7 +38,7 @@ def __init__(self) -> None:
 
         self._point_id = StringDescriptor(
             name='point_id',
-            description='Identifier for this data point in the dataset.',
+            description='Identifier for this data point in the dataset',
             value_spec=AttributeSpec(
                 default='0',
                 validator=RegexValidator(pattern=r'^[A-Za-z0-9_]*$'),
@@ -50,7 +51,7 @@ def __init__(self) -> None:
         )
         self._r = NumericDescriptor(
             name='r',
-            description='Interatomic distance in real space.',
+            description='Interatomic distance in real space',
             units='Å',
             value_spec=AttributeSpec(
                 default=0.0,
@@ -64,7 +65,7 @@ def __init__(self) -> None:
         )
         self._g_r_meas = NumericDescriptor(
             name='g_r_meas',
-            description='Measured pair distribution function G(r).',
+            description='Measured pair distribution function G(r)',
             value_spec=AttributeSpec(
                 default=0.0,
             ),
@@ -76,7 +77,7 @@ def __init__(self) -> None:
         )
         self._g_r_meas_su = NumericDescriptor(
             name='g_r_meas_su',
-            description='Standard uncertainty of measured G(r).',
+            description='Standard uncertainty of measured G(r)',
             value_spec=AttributeSpec(
                 default=0.0,
                 validator=RangeValidator(ge=0),
@@ -89,7 +90,7 @@ def __init__(self) -> None:
         )
         self._g_r_calc = NumericDescriptor(
             name='g_r_calc',
-            description='Calculated pair distribution function G(r).',
+            description='Calculated pair distribution function G(r)',
             value_spec=AttributeSpec(
                 default=0.0,
             ),
@@ -101,7 +102,7 @@ def __init__(self) -> None:
         )
         self._calc_status = StringDescriptor(
             name='calc_status',
-            description='Status code of the data point in calculation.',
+            description='Status code of the data point in calculation',
             value_spec=AttributeSpec(
                 default='incl',
                 validator=MembershipValidator(allowed=['incl', 'excl']),
@@ -122,26 +123,62 @@ def __init__(self) -> None:
 
     @property
     def point_id(self) -> StringDescriptor:
+        """
+        Identifier for this data point in the dataset.
+
+        Reading this property returns the underlying
+        ``StringDescriptor`` object.
+        """
         return self._point_id
 
     @property
     def r(self) -> NumericDescriptor:
+        """
+        Interatomic distance in real space (Å).
+
+        Reading this property returns the underlying
+        ``NumericDescriptor`` object.
+        """
         return self._r
 
     @property
     def g_r_meas(self) -> NumericDescriptor:
+        """
+        Measured pair distribution function G(r).
+
+        Reading this property returns the underlying
+        ``NumericDescriptor`` object.
+        """
         return self._g_r_meas
 
     @property
     def g_r_meas_su(self) -> NumericDescriptor:
+        """
+        Standard uncertainty of measured G(r).
+
+        Reading this property returns the underlying
+        ``NumericDescriptor`` object.
+        """
         return self._g_r_meas_su
 
     @property
     def g_r_calc(self) -> NumericDescriptor:
+        """
+        Calculated pair distribution function G(r).
+
+        Reading this property returns the underlying
+        ``NumericDescriptor`` object.
+        """
         return self._g_r_calc
 
     @property
     def calc_status(self) -> StringDescriptor:
+        """
+        Status code of the data point in calculation.
+
+        Reading this property returns the underlying
+        ``StringDescriptor`` object.
+        """
         return self._calc_status
 
 
@@ -156,32 +193,30 @@ class TotalDataBase(CategoryCollection):
 
     # Should be set only once
 
-    def _set_point_id(self, values) -> None:
-        """Helper method to set point IDs."""
+    def _set_point_id(self, values: object) -> None:
+        """Set point IDs."""
         for p, v in zip(self._items, values, strict=True):
             p.point_id._value = v
 
-    def _set_g_r_meas(self, values) -> None:
-        """Helper method to set measured G(r)."""
+    def _set_g_r_meas(self, values: object) -> None:
+        """Set measured G(r)."""
         for p, v in zip(self._items, values, strict=True):
             p.g_r_meas._value = v
 
-    def _set_g_r_meas_su(self, values) -> None:
-        """Helper method to set standard uncertainty of measured
-        G(r).
-        """
+    def _set_g_r_meas_su(self, values: object) -> None:
+        """Set standard uncertainty of measured G(r) values."""
         for p, v in zip(self._items, values, strict=True):
             p.g_r_meas_su._value = v
 
     # Can be set multiple times
 
-    def _set_g_r_calc(self, values) -> None:
-        """Helper method to set calculated G(r)."""
+    def _set_g_r_calc(self, values: object) -> None:
+        """Set calculated G(r)."""
         for p, v in zip(self._calc_items, values, strict=True):
             p.g_r_calc._value = v
 
-    def _set_calc_status(self, values) -> None:
-        """Helper method to set calculation status."""
+    def _set_calc_status(self, values: object) -> None:
+        """Set calculation status."""
         for p, v in zip(self._items, values, strict=True):
             if v:
                 p.calc_status._value = 'incl'
@@ -197,13 +232,13 @@ def _calc_mask(self) -> np.ndarray:
         return self.calc_status == 'incl'
 
     @property
-    def _calc_items(self):
+    def _calc_items(self) -> list:
         """Get only the items included in calculations."""
         return [item for item, mask in zip(self._items, self._calc_mask, strict=False) if mask]
 
     # Misc
 
-    def _update(self, called_by_minimizer=False):
+    def _update(self, called_by_minimizer: bool = False) -> None:
         experiment = self._parent
         experiments = experiment._parent
         project = experiments._parent
@@ -239,30 +274,34 @@ def _update(self, called_by_minimizer=False):
 
     @property
     def calc_status(self) -> np.ndarray:
+        """Refinement-status flags for each data point as an array."""
         return np.fromiter(
             (p.calc_status.value for p in self._items),
-            dtype=object,  # TODO: needed? DataTypes.NUMERIC?
+            dtype=object,
         )
 
     @property
     def intensity_meas(self) -> np.ndarray:
+        """Measured G(r) values for active data points."""
         return np.fromiter(
             (p.g_r_meas.value for p in self._calc_items),
-            dtype=float,  # TODO: needed? DataTypes.NUMERIC?
+            dtype=float,
         )
 
     @property
     def intensity_meas_su(self) -> np.ndarray:
+        """Standard uncertainties of the measured G(r) values."""
         return np.fromiter(
             (p.g_r_meas_su.value for p in self._calc_items),
-            dtype=float,  # TODO: needed? DataTypes.NUMERIC?
+            dtype=float,
         )
 
     @property
     def intensity_calc(self) -> np.ndarray:
+        """Calculated G(r) values for active data points."""
         return np.fromiter(
             (p.g_r_calc.value for p in self._calc_items),
-            dtype=float,  # TODO: needed? DataTypes.NUMERIC?
+            dtype=float,
         )
 
     @property
@@ -273,13 +312,17 @@ def intensity_bkg(self) -> np.ndarray:
 
 @DataFactory.register
 class TotalData(TotalDataBase):
-    """Total scattering (PDF) data collection in r-space.
+    """
+    Total scattering (PDF) data collection in r-space.
 
-    Note: Works for both CWL and TOF measurements as PDF data
-    is always transformed to r-space.
+    Note: Works for both CWL and TOF measurements as PDF data is always
+    transformed to r-space.
     """
 
-    type_info = TypeInfo(tag='total-pd', description='Total scattering (PDF) data')
+    type_info = TypeInfo(
+        tag='total-pd',
+        description='Total scattering (PDF) data',
+    )
     compatibility = Compatibility(
         sample_form=frozenset({SampleFormEnum.POWDER}),
         scattering_type=frozenset({ScatteringTypeEnum.TOTAL}),
@@ -289,7 +332,7 @@ class TotalData(TotalDataBase):
         calculators=frozenset({CalculatorEnum.PDFFIT}),
     )
 
-    def __init__(self):
+    def __init__(self) -> None:
         super().__init__(item_type=TotalDataPoint)
 
     #################
@@ -298,8 +341,8 @@ def __init__(self):
 
     # Should be set only once
 
-    def _create_items_set_xcoord_and_id(self, values) -> None:
-        """Helper method to set r values."""
+    def _create_items_set_xcoord_and_id(self, values: object) -> None:
+        """Set r values."""
         # TODO: split into multiple methods
 
         # Create items
diff --git a/src/easydiffraction/datablocks/experiment/categories/excluded_regions/__init__.py b/src/easydiffraction/datablocks/experiment/categories/excluded_regions/__init__.py
index 3356f4cf..8d232629 100644
--- a/src/easydiffraction/datablocks/experiment/categories/excluded_regions/__init__.py
+++ b/src/easydiffraction/datablocks/experiment/categories/excluded_regions/__init__.py
@@ -1,4 +1,4 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 
 from easydiffraction.datablocks.experiment.categories.excluded_regions.default import (
diff --git a/src/easydiffraction/datablocks/experiment/categories/excluded_regions/default.py b/src/easydiffraction/datablocks/experiment/categories/excluded_regions/default.py
index 2696f25c..fdf130c2 100644
--- a/src/easydiffraction/datablocks/experiment/categories/excluded_regions/default.py
+++ b/src/easydiffraction/datablocks/experiment/categories/excluded_regions/default.py
@@ -1,4 +1,4 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 """Exclude ranges of x from fitting/plotting (masked regions)."""
 
@@ -29,13 +29,13 @@
 class ExcludedRegion(CategoryItem):
     """Closed interval [start, end] to be excluded."""
 
-    def __init__(self):
+    def __init__(self) -> None:
         super().__init__()
 
         # TODO: Add point_id as for the background
         self._id = StringDescriptor(
             name='id',
-            description='Identifier for this excluded region.',
+            description='Identifier for this excluded region',
             value_spec=AttributeSpec(
                 default='0',
                 # TODO: the following pattern is valid for dict key
@@ -71,33 +71,55 @@ def __init__(self):
     # ------------------------------------------------------------------
 
     @property
-    def id(self):
+    def id(self) -> StringDescriptor:
+        """
+        Identifier for this excluded region.
+
+        Reading this property returns the underlying
+        ``StringDescriptor`` object. Assigning to it updates the
+        parameter value.
+        """
         return self._id
 
     @id.setter
-    def id(self, value):
+    def id(self, value: str) -> None:
         self._id.value = value
 
     @property
     def start(self) -> NumericDescriptor:
+        """
+        Start of the excluded region.
+
+        Reading this property returns the underlying
+        ``NumericDescriptor`` object. Assigning to it updates the
+        parameter value.
+        """
         return self._start
 
     @start.setter
-    def start(self, value: float):
+    def start(self, value: float) -> None:
         self._start.value = value
 
     @property
     def end(self) -> NumericDescriptor:
+        """
+        End of the excluded region.
+
+        Reading this property returns the underlying
+        ``NumericDescriptor`` object. Assigning to it updates the
+        parameter value.
+        """
         return self._end
 
     @end.setter
-    def end(self, value: float):
+    def end(self, value: float) -> None:
         self._end.value = value
 
 
 @ExcludedRegionsFactory.register
 class ExcludedRegions(CategoryCollection):
-    """Collection of ExcludedRegion instances.
+    """
+    Collection of ExcludedRegion instances.
 
     Excluded regions define closed intervals [start, end] on the x-axis
     that are to be excluded from calculations and, as a result, from
@@ -112,10 +134,10 @@ class ExcludedRegions(CategoryCollection):
         sample_form=frozenset({SampleFormEnum.POWDER}),
     )
 
-    def __init__(self):
+    def __init__(self) -> None:
         super().__init__(item_type=ExcludedRegion)
 
-    def _update(self, called_by_minimizer=False):
+    def _update(self, called_by_minimizer: bool = False) -> None:
         del called_by_minimizer
 
         data = self._parent.data
diff --git a/src/easydiffraction/datablocks/experiment/categories/excluded_regions/factory.py b/src/easydiffraction/datablocks/experiment/categories/excluded_regions/factory.py
index 789e25e7..e12fb0c0 100644
--- a/src/easydiffraction/datablocks/experiment/categories/excluded_regions/factory.py
+++ b/src/easydiffraction/datablocks/experiment/categories/excluded_regions/factory.py
@@ -1,6 +1,8 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
-"""Excluded-regions factory — delegates entirely to ``FactoryBase``."""
+"""
+Excluded-regions factory — delegates entirely to ``FactoryBase``.
+"""
 
 from __future__ import annotations
 
diff --git a/src/easydiffraction/datablocks/experiment/categories/experiment_type/__init__.py b/src/easydiffraction/datablocks/experiment/categories/experiment_type/__init__.py
index 63e6bb0b..197b5510 100644
--- a/src/easydiffraction/datablocks/experiment/categories/experiment_type/__init__.py
+++ b/src/easydiffraction/datablocks/experiment/categories/experiment_type/__init__.py
@@ -1,4 +1,4 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 
 from easydiffraction.datablocks.experiment.categories.experiment_type.default import ExperimentType
diff --git a/src/easydiffraction/datablocks/experiment/categories/experiment_type/default.py b/src/easydiffraction/datablocks/experiment/categories/experiment_type/default.py
index 5221e444..1b9d3811 100644
--- a/src/easydiffraction/datablocks/experiment/categories/experiment_type/default.py
+++ b/src/easydiffraction/datablocks/experiment/categories/experiment_type/default.py
@@ -1,9 +1,10 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
-"""Experiment type descriptor (form, beam, probe, scattering).
+"""
+Experiment type descriptor (form, beam, probe, scattering).
 
-This lightweight container stores the categorical attributes defining
-an experiment configuration and handles CIF serialization via
+This lightweight container stores the categorical attributes defining an
+experiment configuration and handles CIF serialization via
 ``CifHandler``.
 """
 
@@ -26,27 +27,19 @@
 
 @ExperimentTypeFactory.register
 class ExperimentType(CategoryItem):
-    """Container of categorical attributes defining experiment flavor.
-
-    Args:
-        sample_form: Powder or Single crystal.
-        beam_mode: Constant wavelength (CW) or time-of-flight (TOF).
-        radiation_probe: Neutrons or X-rays.
-        scattering_type: Bragg or Total.
-    """
+    """Container of attributes defining the experiment type."""
 
     type_info = TypeInfo(
         tag='default',
         description='Experiment type descriptor',
     )
 
-    def __init__(self):
+    def __init__(self) -> None:
         super().__init__()
 
         self._sample_form = StringDescriptor(
             name='sample_form',
-            description='Specifies whether the diffraction data corresponds to '
-            'powder diffraction or single crystal diffraction',
+            description='Powder diffraction or single crystal diffraction',
             value_spec=AttributeSpec(
                 default=SampleFormEnum.default().value,
                 validator=MembershipValidator(allowed=[member.value for member in SampleFormEnum]),
@@ -56,8 +49,7 @@ def __init__(self):
 
         self._beam_mode = StringDescriptor(
             name='beam_mode',
-            description='Defines whether the measurement is performed with a '
-            'constant wavelength (CW) or time-of-flight (TOF) method',
+            description='Constant wavelength (CW) or time-of-flight (TOF) measurement',
             value_spec=AttributeSpec(
                 default=BeamModeEnum.default().value,
                 validator=MembershipValidator(allowed=[member.value for member in BeamModeEnum]),
@@ -66,7 +58,7 @@ def __init__(self):
         )
         self._radiation_probe = StringDescriptor(
             name='radiation_probe',
-            description='Specifies whether the measurement uses neutrons or X-rays',
+            description='Neutron or X-ray diffraction measurement',
             value_spec=AttributeSpec(
                 default=RadiationProbeEnum.default().value,
                 validator=MembershipValidator(
@@ -77,9 +69,7 @@ def __init__(self):
         )
         self._scattering_type = StringDescriptor(
             name='scattering_type',
-            description='Specifies whether the experiment uses Bragg scattering '
-            '(for conventional structure refinement) or total scattering '
-            '(for pair distribution function analysis - PDF)',
+            description='Conventional Bragg diffraction or total scattering (PDF)',
             value_spec=AttributeSpec(
                 default=ScatteringTypeEnum.default().value,
                 validator=MembershipValidator(
@@ -112,17 +102,41 @@ def _set_scattering_type(self, value: str) -> None:
     # ------------------------------------------------------------------
 
     @property
-    def sample_form(self):
+    def sample_form(self) -> StringDescriptor:
+        """
+        Powder diffraction or single crystal diffraction.
+
+        Reading this property returns the underlying
+        ``StringDescriptor`` object.
+        """
         return self._sample_form
 
     @property
-    def beam_mode(self):
+    def beam_mode(self) -> StringDescriptor:
+        """
+        Constant wavelength (CW) or time-of-flight (TOF) measurement.
+
+        Reading this property returns the underlying
+        ``StringDescriptor`` object.
+        """
         return self._beam_mode
 
     @property
-    def radiation_probe(self):
+    def radiation_probe(self) -> StringDescriptor:
+        """
+        Neutron or X-ray diffraction measurement.
+
+        Reading this property returns the underlying
+        ``StringDescriptor`` object.
+        """
         return self._radiation_probe
 
     @property
-    def scattering_type(self):
+    def scattering_type(self) -> StringDescriptor:
+        """
+        Conventional Bragg diffraction or total scattering (PDF).
+
+        Reading this property returns the underlying
+        ``StringDescriptor`` object.
+        """
         return self._scattering_type
diff --git a/src/easydiffraction/datablocks/experiment/categories/experiment_type/factory.py b/src/easydiffraction/datablocks/experiment/categories/experiment_type/factory.py
index bf78fb53..05f0d2d9 100644
--- a/src/easydiffraction/datablocks/experiment/categories/experiment_type/factory.py
+++ b/src/easydiffraction/datablocks/experiment/categories/experiment_type/factory.py
@@ -1,4 +1,4 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 """Experiment-type factory — delegates entirely to ``FactoryBase``."""
 
diff --git a/src/easydiffraction/datablocks/experiment/categories/extinction/__init__.py b/src/easydiffraction/datablocks/experiment/categories/extinction/__init__.py
index f3d62fad..3e6fa39a 100644
--- a/src/easydiffraction/datablocks/experiment/categories/extinction/__init__.py
+++ b/src/easydiffraction/datablocks/experiment/categories/extinction/__init__.py
@@ -1,4 +1,4 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 
 from easydiffraction.datablocks.experiment.categories.extinction.shelx import ShelxExtinction
diff --git a/src/easydiffraction/datablocks/experiment/categories/extinction/factory.py b/src/easydiffraction/datablocks/experiment/categories/extinction/factory.py
index fbeb32e7..4e4bd9ed 100644
--- a/src/easydiffraction/datablocks/experiment/categories/extinction/factory.py
+++ b/src/easydiffraction/datablocks/experiment/categories/extinction/factory.py
@@ -1,4 +1,4 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 """Extinction factory — delegates entirely to ``FactoryBase``."""
 
diff --git a/src/easydiffraction/datablocks/experiment/categories/extinction/shelx.py b/src/easydiffraction/datablocks/experiment/categories/extinction/shelx.py
index 67dfaf94..dd736a1a 100644
--- a/src/easydiffraction/datablocks/experiment/categories/extinction/shelx.py
+++ b/src/easydiffraction/datablocks/experiment/categories/extinction/shelx.py
@@ -1,4 +1,4 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 """Shelx-style isotropic extinction correction."""
 
@@ -17,9 +17,7 @@
 
 @ExtinctionFactory.register
 class ShelxExtinction(CategoryItem):
-    """Shelx-style isotropic extinction correction for single
-    crystals.
-    """
+    """Shelx-style extinction correction for single crystals."""
 
     type_info = TypeInfo(
         tag='shelx',
@@ -34,7 +32,7 @@ def __init__(self) -> None:
 
         self._mosaicity = Parameter(
             name='mosaicity',
-            description='Mosaicity value for extinction correction.',
+            description='Mosaicity value for extinction correction',
             units='deg',
             value_spec=AttributeSpec(
                 default=1.0,
@@ -48,7 +46,7 @@ def __init__(self) -> None:
         )
         self._radius = Parameter(
             name='radius',
-            description='Crystal radius for extinction correction.',
+            description='Crystal radius for extinction correction',
             units='µm',
             value_spec=AttributeSpec(
                 default=1.0,
@@ -68,17 +66,29 @@ def __init__(self) -> None:
     # ------------------------------------------------------------------
 
     @property
-    def mosaicity(self):
+    def mosaicity(self) -> Parameter:
+        """
+        Mosaicity value for extinction correction (deg).
+
+        Reading this property returns the underlying ``Parameter``
+        object. Assigning to it updates the parameter value.
+        """
         return self._mosaicity
 
     @mosaicity.setter
-    def mosaicity(self, value):
+    def mosaicity(self, value: float) -> None:
         self._mosaicity.value = value
 
     @property
-    def radius(self):
+    def radius(self) -> Parameter:
+        """
+        Crystal radius for extinction correction (µm).
+
+        Reading this property returns the underlying ``Parameter``
+        object. Assigning to it updates the parameter value.
+        """
         return self._radius
 
     @radius.setter
-    def radius(self, value):
+    def radius(self, value: float) -> None:
         self._radius.value = value
diff --git a/src/easydiffraction/datablocks/experiment/categories/instrument/__init__.py b/src/easydiffraction/datablocks/experiment/categories/instrument/__init__.py
index e4a03696..d12b40c3 100644
--- a/src/easydiffraction/datablocks/experiment/categories/instrument/__init__.py
+++ b/src/easydiffraction/datablocks/experiment/categories/instrument/__init__.py
@@ -1,4 +1,4 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 
 from easydiffraction.datablocks.experiment.categories.instrument.cwl import CwlPdInstrument
diff --git a/src/easydiffraction/datablocks/experiment/categories/instrument/base.py b/src/easydiffraction/datablocks/experiment/categories/instrument/base.py
index 0d1c04d5..a2568884 100644
--- a/src/easydiffraction/datablocks/experiment/categories/instrument/base.py
+++ b/src/easydiffraction/datablocks/experiment/categories/instrument/base.py
@@ -1,6 +1,7 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
-"""Instrument category base definitions for CWL/TOF instruments.
+"""
+Instrument category base definitions for CWL/TOF instruments.
 
 This module provides the shared parent used by concrete instrument
 implementations under the instrument category.
@@ -12,7 +13,8 @@
 
 
 class InstrumentBase(CategoryItem):
-    """Base class for instrument category items.
+    """
+    Base class for instrument category items.
 
     This class sets the common ``category_code`` and is used as a base
     for concrete CWL/TOF instrument definitions.
diff --git a/src/easydiffraction/datablocks/experiment/categories/instrument/cwl.py b/src/easydiffraction/datablocks/experiment/categories/instrument/cwl.py
index 924158a0..3a3628bd 100644
--- a/src/easydiffraction/datablocks/experiment/categories/instrument/cwl.py
+++ b/src/easydiffraction/datablocks/experiment/categories/instrument/cwl.py
@@ -1,4 +1,4 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 
 from easydiffraction.core.metadata import CalculatorSupport
@@ -17,6 +17,8 @@
 
 
 class CwlInstrumentBase(InstrumentBase):
+    """Base class for constant-wavelength instruments."""
+
     def __init__(self) -> None:
         super().__init__()
 
@@ -36,19 +38,28 @@ def __init__(self) -> None:
         )
 
     @property
-    def setup_wavelength(self):
-        """Incident wavelength parameter (Å)."""
+    def setup_wavelength(self) -> Parameter:
+        """
+        Incident neutron or X-ray wavelength (Å).
+
+        Reading this property returns the underlying ``Parameter``
+        object. Assigning to it updates the parameter value.
+        """
         return self._setup_wavelength
 
     @setup_wavelength.setter
-    def setup_wavelength(self, value):
-        """Set incident wavelength value (Å)."""
+    def setup_wavelength(self, value: float) -> None:
         self._setup_wavelength.value = value
 
 
 @InstrumentFactory.register
 class CwlScInstrument(CwlInstrumentBase):
-    type_info = TypeInfo(tag='cwl-sc', description='CW single-crystal diffractometer')
+    """CW single-crystal diffractometer."""
+
+    type_info = TypeInfo(
+        tag='cwl-sc',
+        description='CW single-crystal diffractometer',
+    )
     compatibility = Compatibility(
         scattering_type=frozenset({ScatteringTypeEnum.BRAGG}),
         beam_mode=frozenset({BeamModeEnum.CONSTANT_WAVELENGTH}),
@@ -64,7 +75,12 @@ def __init__(self) -> None:
 
 @InstrumentFactory.register
 class CwlPdInstrument(CwlInstrumentBase):
-    type_info = TypeInfo(tag='cwl-pd', description='CW powder diffractometer')
+    """CW powder diffractometer."""
+
+    type_info = TypeInfo(
+        tag='cwl-pd',
+        description='CW powder diffractometer',
+    )
     compatibility = Compatibility(
         scattering_type=frozenset({ScatteringTypeEnum.BRAGG, ScatteringTypeEnum.TOTAL}),
         beam_mode=frozenset({BeamModeEnum.CONSTANT_WAVELENGTH}),
@@ -97,11 +113,15 @@ def __init__(self) -> None:
         )
 
     @property
-    def calib_twotheta_offset(self):
-        """Instrument misalignment two-theta offset (deg)."""
+    def calib_twotheta_offset(self) -> Parameter:
+        """
+        Instrument misalignment offset (deg).
+
+        Reading this property returns the underlying ``Parameter``
+        object. Assigning to it updates the parameter value.
+        """
         return self._calib_twotheta_offset
 
     @calib_twotheta_offset.setter
-    def calib_twotheta_offset(self, value):
-        """Set two-theta offset value (deg)."""
+    def calib_twotheta_offset(self, value: float) -> None:
         self._calib_twotheta_offset.value = value
diff --git a/src/easydiffraction/datablocks/experiment/categories/instrument/factory.py b/src/easydiffraction/datablocks/experiment/categories/instrument/factory.py
index 7d4286af..fce8ad5c 100644
--- a/src/easydiffraction/datablocks/experiment/categories/instrument/factory.py
+++ b/src/easydiffraction/datablocks/experiment/categories/instrument/factory.py
@@ -1,4 +1,4 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 """Instrument factory — delegates to ``FactoryBase``."""
 
diff --git a/src/easydiffraction/datablocks/experiment/categories/instrument/tof.py b/src/easydiffraction/datablocks/experiment/categories/instrument/tof.py
index efbff40d..7e1db98e 100644
--- a/src/easydiffraction/datablocks/experiment/categories/instrument/tof.py
+++ b/src/easydiffraction/datablocks/experiment/categories/instrument/tof.py
@@ -1,4 +1,4 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 
 from easydiffraction.core.metadata import CalculatorSupport
@@ -18,7 +18,12 @@
 
 @InstrumentFactory.register
 class TofScInstrument(InstrumentBase):
-    type_info = TypeInfo(tag='tof-sc', description='TOF single-crystal diffractometer')
+    """TOF single-crystal diffractometer."""
+
+    type_info = TypeInfo(
+        tag='tof-sc',
+        description='TOF single-crystal diffractometer',
+    )
     compatibility = Compatibility(
         scattering_type=frozenset({ScatteringTypeEnum.BRAGG}),
         beam_mode=frozenset({BeamModeEnum.TIME_OF_FLIGHT}),
@@ -34,7 +39,12 @@ def __init__(self) -> None:
 
 @InstrumentFactory.register
 class TofPdInstrument(InstrumentBase):
-    type_info = TypeInfo(tag='tof-pd', description='TOF powder diffractometer')
+    """TOF powder diffractometer."""
+
+    type_info = TypeInfo(
+        tag='tof-pd',
+        description='TOF powder diffractometer',
+    )
     compatibility = Compatibility(
         scattering_type=frozenset({ScatteringTypeEnum.BRAGG}),
         beam_mode=frozenset({BeamModeEnum.TIME_OF_FLIGHT}),
@@ -99,41 +109,71 @@ def __init__(self) -> None:
         )
 
     @property
-    def setup_twotheta_bank(self):
+    def setup_twotheta_bank(self) -> Parameter:
+        """
+        Detector bank position (deg).
+
+        Reading this property returns the underlying ``Parameter``
+        object. Assigning to it updates the parameter value.
+        """
         return self._setup_twotheta_bank
 
     @setup_twotheta_bank.setter
-    def setup_twotheta_bank(self, value):
+    def setup_twotheta_bank(self, value: float) -> None:
         self._setup_twotheta_bank.value = value
 
     @property
-    def calib_d_to_tof_offset(self):
+    def calib_d_to_tof_offset(self) -> Parameter:
+        """
+        TOF offset (µs).
+
+        Reading this property returns the underlying ``Parameter``
+        object. Assigning to it updates the parameter value.
+        """
         return self._calib_d_to_tof_offset
 
     @calib_d_to_tof_offset.setter
-    def calib_d_to_tof_offset(self, value):
+    def calib_d_to_tof_offset(self, value: float) -> None:
         self._calib_d_to_tof_offset.value = value
 
     @property
-    def calib_d_to_tof_linear(self):
+    def calib_d_to_tof_linear(self) -> Parameter:
+        """
+        TOF linear conversion (µs/Å).
+
+        Reading this property returns the underlying ``Parameter``
+        object. Assigning to it updates the parameter value.
+        """
         return self._calib_d_to_tof_linear
 
     @calib_d_to_tof_linear.setter
-    def calib_d_to_tof_linear(self, value):
+    def calib_d_to_tof_linear(self, value: float) -> None:
         self._calib_d_to_tof_linear.value = value
 
     @property
-    def calib_d_to_tof_quad(self):
+    def calib_d_to_tof_quad(self) -> Parameter:
+        """
+        TOF quadratic correction (µs/Ų).
+
+        Reading this property returns the underlying ``Parameter``
+        object. Assigning to it updates the parameter value.
+        """
         return self._calib_d_to_tof_quad
 
     @calib_d_to_tof_quad.setter
-    def calib_d_to_tof_quad(self, value):
+    def calib_d_to_tof_quad(self, value: float) -> None:
         self._calib_d_to_tof_quad.value = value
 
     @property
-    def calib_d_to_tof_recip(self):
+    def calib_d_to_tof_recip(self) -> Parameter:
+        """
+        TOF reciprocal velocity correction (µs·Å).
+
+        Reading this property returns the underlying ``Parameter``
+        object. Assigning to it updates the parameter value.
+        """
         return self._calib_d_to_tof_recip
 
     @calib_d_to_tof_recip.setter
-    def calib_d_to_tof_recip(self, value):
+    def calib_d_to_tof_recip(self, value: float) -> None:
         self._calib_d_to_tof_recip.value = value
diff --git a/src/easydiffraction/datablocks/experiment/categories/linked_crystal/__init__.py b/src/easydiffraction/datablocks/experiment/categories/linked_crystal/__init__.py
index 1a6b0b67..4b93121b 100644
--- a/src/easydiffraction/datablocks/experiment/categories/linked_crystal/__init__.py
+++ b/src/easydiffraction/datablocks/experiment/categories/linked_crystal/__init__.py
@@ -1,4 +1,4 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 
 from easydiffraction.datablocks.experiment.categories.linked_crystal.default import LinkedCrystal
diff --git a/src/easydiffraction/datablocks/experiment/categories/linked_crystal/default.py b/src/easydiffraction/datablocks/experiment/categories/linked_crystal/default.py
index e1fa8b6a..d441aa9c 100644
--- a/src/easydiffraction/datablocks/experiment/categories/linked_crystal/default.py
+++ b/src/easydiffraction/datablocks/experiment/categories/linked_crystal/default.py
@@ -1,4 +1,4 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 """Default linked-crystal reference (id + scale)."""
 
@@ -21,9 +21,7 @@
 
 @LinkedCrystalFactory.register
 class LinkedCrystal(CategoryItem):
-    """Linked crystal category for referencing from the experiment for
-    single crystal diffraction.
-    """
+    """Linked crystal reference for single-crystal diffraction."""
 
     type_info = TypeInfo(
         tag='default',
@@ -38,7 +36,7 @@ def __init__(self) -> None:
 
         self._id = StringDescriptor(
             name='id',
-            description='Identifier of the linked crystal.',
+            description='Identifier of the linked crystal',
             value_spec=AttributeSpec(
                 default='Si',
                 validator=RegexValidator(pattern=r'^[A-Za-z_][A-Za-z0-9_]*$'),
@@ -47,7 +45,7 @@ def __init__(self) -> None:
         )
         self._scale = Parameter(
             name='scale',
-            description='Scale factor of the linked crystal.',
+            description='Scale factor of the linked crystal',
             value_spec=AttributeSpec(
                 default=1.0,
                 validator=RangeValidator(),
@@ -63,16 +61,29 @@ def __init__(self) -> None:
 
     @property
     def id(self) -> StringDescriptor:
+        """
+        Identifier of the linked crystal.
+
+        Reading this property returns the underlying
+        ``StringDescriptor`` object. Assigning to it updates the
+        parameter value.
+        """
         return self._id
 
     @id.setter
-    def id(self, value: str):
+    def id(self, value: str) -> None:
         self._id.value = value
 
     @property
     def scale(self) -> Parameter:
+        """
+        Scale factor of the linked crystal.
+
+        Reading this property returns the underlying ``Parameter``
+        object. Assigning to it updates the parameter value.
+        """
         return self._scale
 
     @scale.setter
-    def scale(self, value: float):
+    def scale(self, value: float) -> None:
         self._scale.value = value
diff --git a/src/easydiffraction/datablocks/experiment/categories/linked_crystal/factory.py b/src/easydiffraction/datablocks/experiment/categories/linked_crystal/factory.py
index 49ac1a64..b34b8073 100644
--- a/src/easydiffraction/datablocks/experiment/categories/linked_crystal/factory.py
+++ b/src/easydiffraction/datablocks/experiment/categories/linked_crystal/factory.py
@@ -1,4 +1,4 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 """Linked-crystal factory — delegates entirely to ``FactoryBase``."""
 
diff --git a/src/easydiffraction/datablocks/experiment/categories/linked_phases/__init__.py b/src/easydiffraction/datablocks/experiment/categories/linked_phases/__init__.py
index 6dd96b94..dda7d445 100644
--- a/src/easydiffraction/datablocks/experiment/categories/linked_phases/__init__.py
+++ b/src/easydiffraction/datablocks/experiment/categories/linked_phases/__init__.py
@@ -1,4 +1,4 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 
 from easydiffraction.datablocks.experiment.categories.linked_phases.default import LinkedPhase
diff --git a/src/easydiffraction/datablocks/experiment/categories/linked_phases/default.py b/src/easydiffraction/datablocks/experiment/categories/linked_phases/default.py
index 067683a9..97d03c66 100644
--- a/src/easydiffraction/datablocks/experiment/categories/linked_phases/default.py
+++ b/src/easydiffraction/datablocks/experiment/categories/linked_phases/default.py
@@ -1,4 +1,4 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 """Linked phases allow combining phases with scale factors."""
 
@@ -23,12 +23,12 @@
 class LinkedPhase(CategoryItem):
     """Link to a phase by id with a scale factor."""
 
-    def __init__(self):
+    def __init__(self) -> None:
         super().__init__()
 
         self._id = StringDescriptor(
             name='id',
-            description='Identifier of the linked phase.',
+            description='Identifier of the linked phase',
             value_spec=AttributeSpec(
                 default='Si',
                 validator=RegexValidator(pattern=r'^[A-Za-z_][A-Za-z0-9_]*$'),
@@ -54,18 +54,31 @@ def __init__(self):
 
     @property
     def id(self) -> StringDescriptor:
+        """
+        Identifier of the linked phase.
+
+        Reading this property returns the underlying
+        ``StringDescriptor`` object. Assigning to it updates the
+        parameter value.
+        """
         return self._id
 
     @id.setter
-    def id(self, value: str):
+    def id(self, value: str) -> None:
         self._id.value = value
 
     @property
     def scale(self) -> Parameter:
+        """
+        Scale factor of the linked phase.
+
+        Reading this property returns the underlying ``Parameter``
+        object. Assigning to it updates the parameter value.
+        """
         return self._scale
 
     @scale.setter
-    def scale(self, value: float):
+    def scale(self, value: float) -> None:
         self._scale.value = value
 
 
@@ -81,6 +94,6 @@ class LinkedPhases(CategoryCollection):
         sample_form=frozenset({SampleFormEnum.POWDER}),
     )
 
-    def __init__(self):
+    def __init__(self) -> None:
         """Create an empty collection of linked phases."""
         super().__init__(item_type=LinkedPhase)
diff --git a/src/easydiffraction/datablocks/experiment/categories/linked_phases/factory.py b/src/easydiffraction/datablocks/experiment/categories/linked_phases/factory.py
index 74f16616..56970ee8 100644
--- a/src/easydiffraction/datablocks/experiment/categories/linked_phases/factory.py
+++ b/src/easydiffraction/datablocks/experiment/categories/linked_phases/factory.py
@@ -1,4 +1,4 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 """Linked-phases factory — delegates entirely to ``FactoryBase``."""
 
diff --git a/src/easydiffraction/datablocks/experiment/categories/peak/__init__.py b/src/easydiffraction/datablocks/experiment/categories/peak/__init__.py
index b335b9d3..667bafb4 100644
--- a/src/easydiffraction/datablocks/experiment/categories/peak/__init__.py
+++ b/src/easydiffraction/datablocks/experiment/categories/peak/__init__.py
@@ -1,4 +1,4 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 
 from easydiffraction.datablocks.experiment.categories.peak.cwl import CwlPseudoVoigt
diff --git a/src/easydiffraction/datablocks/experiment/categories/peak/base.py b/src/easydiffraction/datablocks/experiment/categories/peak/base.py
index 5f2654a7..050411b1 100644
--- a/src/easydiffraction/datablocks/experiment/categories/peak/base.py
+++ b/src/easydiffraction/datablocks/experiment/categories/peak/base.py
@@ -1,4 +1,4 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 """Base class for peak profile categories."""
 
diff --git a/src/easydiffraction/datablocks/experiment/categories/peak/cwl.py b/src/easydiffraction/datablocks/experiment/categories/peak/cwl.py
index aa03c80c..a2b4f63b 100644
--- a/src/easydiffraction/datablocks/experiment/categories/peak/cwl.py
+++ b/src/easydiffraction/datablocks/experiment/categories/peak/cwl.py
@@ -1,4 +1,4 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 """Constant-wavelength peak profile classes."""
 
@@ -24,7 +24,10 @@ class CwlPseudoVoigt(
 ):
     """Constant-wavelength pseudo-Voigt peak shape."""
 
-    type_info = TypeInfo(tag='pseudo-voigt', description='Pseudo-Voigt profile')
+    type_info = TypeInfo(
+        tag='pseudo-voigt',
+        description='Pseudo-Voigt profile',
+    )
     compatibility = Compatibility(
         scattering_type=frozenset({ScatteringTypeEnum.BRAGG}),
         beam_mode=frozenset({BeamModeEnum.CONSTANT_WAVELENGTH}),
diff --git a/src/easydiffraction/datablocks/experiment/categories/peak/cwl_mixins.py b/src/easydiffraction/datablocks/experiment/categories/peak/cwl_mixins.py
index 2bc9c178..6e4f29c8 100644
--- a/src/easydiffraction/datablocks/experiment/categories/peak/cwl_mixins.py
+++ b/src/easydiffraction/datablocks/experiment/categories/peak/cwl_mixins.py
@@ -1,6 +1,7 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
-"""Constant-wavelength (CWL) peak-profile component classes.
+"""
+Constant-wavelength (CWL) peak-profile component classes.
 
 This module provides classes that add broadening and asymmetry
 parameters. They are composed into concrete peak classes elsewhere via
@@ -16,13 +17,12 @@
 class CwlBroadeningMixin:
     """CWL Gaussian and Lorentz broadening parameters."""
 
-    def __init__(self):
+    def __init__(self) -> None:
         super().__init__()
 
         self._broad_gauss_u: Parameter = Parameter(
             name='broad_gauss_u',
-            description='Gaussian broadening coefficient (dependent on '
-            'sample size and instrument resolution)',
+            description='Gaussian broadening from sample size and resolution',
             units='deg²',
             value_spec=AttributeSpec(
                 default=0.01,
@@ -32,7 +32,7 @@ def __init__(self):
         )
         self._broad_gauss_v: Parameter = Parameter(
             name='broad_gauss_v',
-            description='Gaussian broadening coefficient (instrumental broadening contribution)',
+            description='Gaussian broadening instrumental contribution',
             units='deg²',
             value_spec=AttributeSpec(
                 default=-0.01,
@@ -42,7 +42,7 @@ def __init__(self):
         )
         self._broad_gauss_w: Parameter = Parameter(
             name='broad_gauss_w',
-            description='Gaussian broadening coefficient (instrumental broadening contribution)',
+            description='Gaussian broadening instrumental contribution',
             units='deg²',
             value_spec=AttributeSpec(
                 default=0.02,
@@ -52,7 +52,7 @@ def __init__(self):
         )
         self._broad_lorentz_x: Parameter = Parameter(
             name='broad_lorentz_x',
-            description='Lorentzian broadening coefficient (dependent on sample strain effects)',
+            description='Lorentzian broadening from sample strain effects',
             units='deg',
             value_spec=AttributeSpec(
                 default=0.0,
@@ -62,8 +62,7 @@ def __init__(self):
         )
         self._broad_lorentz_y: Parameter = Parameter(
             name='broad_lorentz_y',
-            description='Lorentzian broadening coefficient (dependent on '
-            'microstructural defects and strain)',
+            description='Lorentzian broadening from microstructural defects',
             units='deg',
             value_spec=AttributeSpec(
                 default=0.0,
@@ -78,49 +77,79 @@ def __init__(self):
 
     @property
     def broad_gauss_u(self) -> Parameter:
+        """
+        Gaussian broadening from sample size and resolution (deg²).
+
+        Reading this property returns the underlying ``Parameter``
+        object. Assigning to it updates the parameter value.
+        """
         return self._broad_gauss_u
 
     @broad_gauss_u.setter
-    def broad_gauss_u(self, value):
+    def broad_gauss_u(self, value: float) -> None:
         self._broad_gauss_u.value = value
 
     @property
     def broad_gauss_v(self) -> Parameter:
+        """
+        Gaussian broadening instrumental contribution (deg²).
+
+        Reading this property returns the underlying ``Parameter``
+        object. Assigning to it updates the parameter value.
+        """
         return self._broad_gauss_v
 
     @broad_gauss_v.setter
-    def broad_gauss_v(self, value):
+    def broad_gauss_v(self, value: float) -> None:
         self._broad_gauss_v.value = value
 
     @property
     def broad_gauss_w(self) -> Parameter:
+        """
+        Gaussian broadening instrumental contribution (deg²).
+
+        Reading this property returns the underlying ``Parameter``
+        object. Assigning to it updates the parameter value.
+        """
         return self._broad_gauss_w
 
     @broad_gauss_w.setter
-    def broad_gauss_w(self, value):
+    def broad_gauss_w(self, value: float) -> None:
         self._broad_gauss_w.value = value
 
     @property
     def broad_lorentz_x(self) -> Parameter:
+        """
+        Lorentzian broadening (sample strain effects) (deg).
+
+        Reading this property returns the underlying ``Parameter``
+        object. Assigning to it updates the parameter value.
+        """
         return self._broad_lorentz_x
 
     @broad_lorentz_x.setter
-    def broad_lorentz_x(self, value):
+    def broad_lorentz_x(self, value: float) -> None:
         self._broad_lorentz_x.value = value
 
     @property
     def broad_lorentz_y(self) -> Parameter:
+        """
+        Lorentzian broadening from microstructural defects (deg).
+
+        Reading this property returns the underlying ``Parameter``
+        object. Assigning to it updates the parameter value.
+        """
         return self._broad_lorentz_y
 
     @broad_lorentz_y.setter
-    def broad_lorentz_y(self, value):
+    def broad_lorentz_y(self, value: float) -> None:
         self._broad_lorentz_y.value = value
 
 
 class EmpiricalAsymmetryMixin:
     """Empirical CWL peak asymmetry parameters."""
 
-    def __init__(self):
+    def __init__(self) -> None:
         super().__init__()
 
         self._asym_empir_1: Parameter = Parameter(
@@ -170,41 +199,65 @@ def __init__(self):
 
     @property
     def asym_empir_1(self) -> Parameter:
+        """
+        Empirical asymmetry coefficient p1.
+
+        Reading this property returns the underlying ``Parameter``
+        object. Assigning to it updates the parameter value.
+        """
         return self._asym_empir_1
 
     @asym_empir_1.setter
-    def asym_empir_1(self, value):
+    def asym_empir_1(self, value: float) -> None:
         self._asym_empir_1.value = value
 
     @property
     def asym_empir_2(self) -> Parameter:
+        """
+        Empirical asymmetry coefficient p2.
+
+        Reading this property returns the underlying ``Parameter``
+        object. Assigning to it updates the parameter value.
+        """
         return self._asym_empir_2
 
     @asym_empir_2.setter
-    def asym_empir_2(self, value):
+    def asym_empir_2(self, value: float) -> None:
         self._asym_empir_2.value = value
 
     @property
     def asym_empir_3(self) -> Parameter:
+        """
+        Empirical asymmetry coefficient p3.
+
+        Reading this property returns the underlying ``Parameter``
+        object. Assigning to it updates the parameter value.
+        """
         return self._asym_empir_3
 
     @asym_empir_3.setter
-    def asym_empir_3(self, value):
+    def asym_empir_3(self, value: float) -> None:
         self._asym_empir_3.value = value
 
     @property
     def asym_empir_4(self) -> Parameter:
+        """
+        Empirical asymmetry coefficient p4.
+
+        Reading this property returns the underlying ``Parameter``
+        object. Assigning to it updates the parameter value.
+        """
         return self._asym_empir_4
 
     @asym_empir_4.setter
-    def asym_empir_4(self, value):
+    def asym_empir_4(self, value: float) -> None:
         self._asym_empir_4.value = value
 
 
 class FcjAsymmetryMixin:
     """Finger–Cox–Jephcoat (FCJ) asymmetry parameters."""
 
-    def __init__(self):
+    def __init__(self) -> None:
         super().__init__()
 
         self._asym_fcj_1: Parameter = Parameter(
@@ -233,17 +286,29 @@ def __init__(self):
     # ------------------------------------------------------------------
 
     @property
-    def asym_fcj_1(self):
+    def asym_fcj_1(self) -> Parameter:
+        """
+        Finger-Cox-Jephcoat asymmetry parameter 1.
+
+        Reading this property returns the underlying ``Parameter``
+        object. Assigning to it updates the parameter value.
+        """
         return self._asym_fcj_1
 
     @asym_fcj_1.setter
-    def asym_fcj_1(self, value):
+    def asym_fcj_1(self, value: float) -> None:
         self._asym_fcj_1.value = value
 
     @property
-    def asym_fcj_2(self):
+    def asym_fcj_2(self) -> Parameter:
+        """
+        Finger-Cox-Jephcoat asymmetry parameter 2.
+
+        Reading this property returns the underlying ``Parameter``
+        object. Assigning to it updates the parameter value.
+        """
         return self._asym_fcj_2
 
     @asym_fcj_2.setter
-    def asym_fcj_2(self, value):
+    def asym_fcj_2(self, value: float) -> None:
         self._asym_fcj_2.value = value
diff --git a/src/easydiffraction/datablocks/experiment/categories/peak/factory.py b/src/easydiffraction/datablocks/experiment/categories/peak/factory.py
index 1992b633..ca196748 100644
--- a/src/easydiffraction/datablocks/experiment/categories/peak/factory.py
+++ b/src/easydiffraction/datablocks/experiment/categories/peak/factory.py
@@ -1,4 +1,4 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 """Peak profile factory — delegates to ``FactoryBase``."""
 
diff --git a/src/easydiffraction/datablocks/experiment/categories/peak/tof.py b/src/easydiffraction/datablocks/experiment/categories/peak/tof.py
index 1c70b65b..59c0b9e3 100644
--- a/src/easydiffraction/datablocks/experiment/categories/peak/tof.py
+++ b/src/easydiffraction/datablocks/experiment/categories/peak/tof.py
@@ -1,4 +1,4 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 """Time-of-flight peak profile classes."""
 
@@ -23,7 +23,10 @@ class TofPseudoVoigt(
 ):
     """Time-of-flight pseudo-Voigt peak shape."""
 
-    type_info = TypeInfo(tag='tof-pseudo-voigt', description='TOF pseudo-Voigt profile')
+    type_info = TypeInfo(
+        tag='tof-pseudo-voigt',
+        description='TOF pseudo-Voigt profile',
+    )
     compatibility = Compatibility(
         scattering_type=frozenset({ScatteringTypeEnum.BRAGG}),
         beam_mode=frozenset({BeamModeEnum.TIME_OF_FLIGHT}),
diff --git a/src/easydiffraction/datablocks/experiment/categories/peak/tof_mixins.py b/src/easydiffraction/datablocks/experiment/categories/peak/tof_mixins.py
index 01a10b26..8093d877 100644
--- a/src/easydiffraction/datablocks/experiment/categories/peak/tof_mixins.py
+++ b/src/easydiffraction/datablocks/experiment/categories/peak/tof_mixins.py
@@ -1,6 +1,7 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
-"""Time-of-flight (TOF) peak-profile component classes.
+"""
+Time-of-flight (TOF) peak-profile component classes.
 
 Defines classes that add Gaussian/Lorentz broadening, mixing, and
 Ikeda–Carpenter asymmetry parameters used by TOF peak shapes. This
@@ -18,12 +19,12 @@
 class TofBroadeningMixin:
     """TOF Gaussian/Lorentz broadening and mixing parameters."""
 
-    def __init__(self):
+    def __init__(self) -> None:
         super().__init__()
 
         self._broad_gauss_sigma_0 = Parameter(
             name='gauss_sigma_0',
-            description='Gaussian broadening coefficient (instrumental resolution)',
+            description='Gaussian broadening (instrumental resolution)',
             units='µs²',
             value_spec=AttributeSpec(
                 default=0.0,
@@ -33,7 +34,7 @@ def __init__(self):
         )
         self._broad_gauss_sigma_1 = Parameter(
             name='gauss_sigma_1',
-            description='Gaussian broadening coefficient (dependent on d-spacing)',
+            description='Gaussian broadening (dependent on d-spacing)',
             units='µs/Å',
             value_spec=AttributeSpec(
                 default=0.0,
@@ -43,7 +44,7 @@ def __init__(self):
         )
         self._broad_gauss_sigma_2 = Parameter(
             name='gauss_sigma_2',
-            description='Gaussian broadening coefficient (instrument-dependent term)',
+            description='Gaussian broadening (instrument-dependent term)',
             units='µs²/Ų',
             value_spec=AttributeSpec(
                 default=0.0,
@@ -53,7 +54,7 @@ def __init__(self):
         )
         self._broad_lorentz_gamma_0 = Parameter(
             name='lorentz_gamma_0',
-            description='Lorentzian broadening coefficient (dependent on microstrain effects)',
+            description='Lorentzian broadening (microstrain effects)',
             units='µs',
             value_spec=AttributeSpec(
                 default=0.0,
@@ -63,7 +64,7 @@ def __init__(self):
         )
         self._broad_lorentz_gamma_1 = Parameter(
             name='lorentz_gamma_1',
-            description='Lorentzian broadening coefficient (dependent on d-spacing)',
+            description='Lorentzian broadening (dependent on d-spacing)',
             units='µs/Å',
             value_spec=AttributeSpec(
                 default=0.0,
@@ -73,7 +74,7 @@ def __init__(self):
         )
         self._broad_lorentz_gamma_2 = Parameter(
             name='lorentz_gamma_2',
-            description='Lorentzian broadening coefficient (instrument-dependent term)',
+            description='Lorentzian broadening (instrument-dependent term)',
             units='µs²/Ų',
             value_spec=AttributeSpec(
                 default=0.0,
@@ -83,8 +84,7 @@ def __init__(self):
         )
         self._broad_mix_beta_0 = Parameter(
             name='mix_beta_0',
-            description='Mixing parameter. Defines the ratio of Gaussian '
-            'to Lorentzian contributions in TOF profiles',
+            description='Ratio of Gaussian to Lorentzian contributions',
             units='deg',
             value_spec=AttributeSpec(
                 default=0.0,
@@ -94,8 +94,7 @@ def __init__(self):
         )
         self._broad_mix_beta_1 = Parameter(
             name='mix_beta_1',
-            description='Mixing parameter. Defines the ratio of Gaussian '
-            'to Lorentzian contributions in TOF profiles',
+            description='Ratio of Gaussian to Lorentzian contributions',
             units='deg',
             value_spec=AttributeSpec(
                 default=0.0,
@@ -109,75 +108,122 @@ def __init__(self):
     # ------------------------------------------------------------------
 
     @property
-    def broad_gauss_sigma_0(self):
+    def broad_gauss_sigma_0(self) -> Parameter:
+        """
+        Gaussian broadening (instrumental resolution) (µs²).
+
+        Reading this property returns the underlying ``Parameter``
+        object. Assigning to it updates the parameter value.
+        """
         return self._broad_gauss_sigma_0
 
     @broad_gauss_sigma_0.setter
-    def broad_gauss_sigma_0(self, value):
+    def broad_gauss_sigma_0(self, value: float) -> None:
         self._broad_gauss_sigma_0.value = value
 
     @property
-    def broad_gauss_sigma_1(self):
+    def broad_gauss_sigma_1(self) -> Parameter:
+        """
+        Gaussian broadening (dependent on d-spacing) (µs/Å).
+
+        Reading this property returns the underlying ``Parameter``
+        object. Assigning to it updates the parameter value.
+        """
         return self._broad_gauss_sigma_1
 
     @broad_gauss_sigma_1.setter
-    def broad_gauss_sigma_1(self, value):
+    def broad_gauss_sigma_1(self, value: float) -> None:
         self._broad_gauss_sigma_1.value = value
 
     @property
-    def broad_gauss_sigma_2(self):
+    def broad_gauss_sigma_2(self) -> Parameter:
+        """
+        Gaussian broadening (instrument-dependent term) (µs²/Ų).
+
+        Reading this property returns the underlying ``Parameter``
+        object. Assigning to it updates the parameter value.
+        """
         return self._broad_gauss_sigma_2
 
     @broad_gauss_sigma_2.setter
-    def broad_gauss_sigma_2(self, value):
-        """Set Gaussian sigma_2 parameter."""
+    def broad_gauss_sigma_2(self, value: float) -> None:
         self._broad_gauss_sigma_2.value = value
 
     @property
-    def broad_lorentz_gamma_0(self):
+    def broad_lorentz_gamma_0(self) -> Parameter:
+        """
+        Lorentzian broadening (microstrain effects) (µs).
+
+        Reading this property returns the underlying ``Parameter``
+        object. Assigning to it updates the parameter value.
+        """
         return self._broad_lorentz_gamma_0
 
     @broad_lorentz_gamma_0.setter
-    def broad_lorentz_gamma_0(self, value):
+    def broad_lorentz_gamma_0(self, value: float) -> None:
         self._broad_lorentz_gamma_0.value = value
 
     @property
-    def broad_lorentz_gamma_1(self):
+    def broad_lorentz_gamma_1(self) -> Parameter:
+        """
+        Lorentzian broadening (dependent on d-spacing) (µs/Å).
+
+        Reading this property returns the underlying ``Parameter``
+        object. Assigning to it updates the parameter value.
+        """
         return self._broad_lorentz_gamma_1
 
     @broad_lorentz_gamma_1.setter
-    def broad_lorentz_gamma_1(self, value):
+    def broad_lorentz_gamma_1(self, value: float) -> None:
         self._broad_lorentz_gamma_1.value = value
 
     @property
-    def broad_lorentz_gamma_2(self):
+    def broad_lorentz_gamma_2(self) -> Parameter:
+        """
+        Lorentzian broadening (instrument-dependent term) (µs²/Ų).
+
+        Reading this property returns the underlying ``Parameter``
+        object. Assigning to it updates the parameter value.
+        """
         return self._broad_lorentz_gamma_2
 
     @broad_lorentz_gamma_2.setter
-    def broad_lorentz_gamma_2(self, value):
+    def broad_lorentz_gamma_2(self, value: float) -> None:
         self._broad_lorentz_gamma_2.value = value
 
     @property
-    def broad_mix_beta_0(self):
+    def broad_mix_beta_0(self) -> Parameter:
+        """
+        Ratio of Gaussian to Lorentzian contributions (deg).
+
+        Reading this property returns the underlying ``Parameter``
+        object. Assigning to it updates the parameter value.
+        """
         return self._broad_mix_beta_0
 
     @broad_mix_beta_0.setter
-    def broad_mix_beta_0(self, value):
+    def broad_mix_beta_0(self, value: float) -> None:
         self._broad_mix_beta_0.value = value
 
     @property
-    def broad_mix_beta_1(self):
+    def broad_mix_beta_1(self) -> Parameter:
+        """
+        Ratio of Gaussian to Lorentzian contributions (deg).
+
+        Reading this property returns the underlying ``Parameter``
+        object. Assigning to it updates the parameter value.
+        """
         return self._broad_mix_beta_1
 
     @broad_mix_beta_1.setter
-    def broad_mix_beta_1(self, value):
+    def broad_mix_beta_1(self, value: float) -> None:
         self._broad_mix_beta_1.value = value
 
 
 class IkedaCarpenterAsymmetryMixin:
     """Ikeda–Carpenter asymmetry parameters."""
 
-    def __init__(self):
+    def __init__(self) -> None:
         super().__init__()
 
         self._asym_alpha_0 = Parameter(
@@ -202,17 +248,29 @@ def __init__(self):
         )
 
     @property
-    def asym_alpha_0(self):
+    def asym_alpha_0(self) -> Parameter:
+        """
+        Ikeda-Carpenter asymmetry parameter α₀.
+
+        Reading this property returns the underlying ``Parameter``
+        object. Assigning to it updates the parameter value.
+        """
         return self._asym_alpha_0
 
     @asym_alpha_0.setter
-    def asym_alpha_0(self, value):
+    def asym_alpha_0(self, value: float) -> None:
         self._asym_alpha_0.value = value
 
     @property
-    def asym_alpha_1(self):
+    def asym_alpha_1(self) -> Parameter:
+        """
+        Ikeda-Carpenter asymmetry parameter α₁.
+
+        Reading this property returns the underlying ``Parameter``
+        object. Assigning to it updates the parameter value.
+        """
         return self._asym_alpha_1
 
     @asym_alpha_1.setter
-    def asym_alpha_1(self, value):
+    def asym_alpha_1(self, value: float) -> None:
         self._asym_alpha_1.value = value
diff --git a/src/easydiffraction/datablocks/experiment/categories/peak/total.py b/src/easydiffraction/datablocks/experiment/categories/peak/total.py
index a1166c1a..61d5e6fd 100644
--- a/src/easydiffraction/datablocks/experiment/categories/peak/total.py
+++ b/src/easydiffraction/datablocks/experiment/categories/peak/total.py
@@ -1,4 +1,4 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 """Total-scattering (PDF) peak profile classes."""
 
diff --git a/src/easydiffraction/datablocks/experiment/categories/peak/total_mixins.py b/src/easydiffraction/datablocks/experiment/categories/peak/total_mixins.py
index 139e37dd..bae2c974 100644
--- a/src/easydiffraction/datablocks/experiment/categories/peak/total_mixins.py
+++ b/src/easydiffraction/datablocks/experiment/categories/peak/total_mixins.py
@@ -1,7 +1,7 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
-"""Total scattering / pair distribution function (PDF) peak-profile
-component classes.
+"""
+Total scattering / PDF peak-profile component classes.
 
 This module provides classes that add broadening and asymmetry
 parameters. They are composed into concrete peak classes elsewhere via
@@ -17,13 +17,12 @@
 class TotalBroadeningMixin:
     """PDF broadening/damping/sharpening parameters."""
 
-    def __init__(self):
+    def __init__(self) -> None:
         super().__init__()
 
         self._damp_q = Parameter(
             name='damp_q',
-            description='Instrumental Q-resolution damping factor '
-            '(affects high-r PDF peak amplitude)',
+            description='Q-resolution damping for high-r PDF peak amplitude',
             units='Å⁻¹',
             value_spec=AttributeSpec(
                 default=0.05,
@@ -33,8 +32,7 @@ def __init__(self):
         )
         self._broad_q = Parameter(
             name='broad_q',
-            description='Quadratic PDF peak broadening coefficient '
-            '(thermal and model uncertainty contribution)',
+            description='Quadratic peak broadening from thermal uncertainty',
             units='Å⁻²',
             value_spec=AttributeSpec(
                 default=0.0,
@@ -44,8 +42,7 @@ def __init__(self):
         )
         self._cutoff_q = Parameter(
             name='cutoff_q',
-            description='Q-value cutoff applied to model PDF for Fourier '
-            'transform (controls real-space resolution)',
+            description='Q-value cutoff for Fourier transform',
             units='Å⁻¹',
             value_spec=AttributeSpec(
                 default=25.0,
@@ -55,7 +52,7 @@ def __init__(self):
         )
         self._sharp_delta_1 = Parameter(
             name='sharp_delta_1',
-            description='PDF peak sharpening coefficient (1/r dependence)',
+            description='Peak sharpening coefficient (1/r dependence)',
             units='Å',
             value_spec=AttributeSpec(
                 default=0.0,
@@ -65,7 +62,7 @@ def __init__(self):
         )
         self._sharp_delta_2 = Parameter(
             name='sharp_delta_2',
-            description='PDF peak sharpening coefficient (1/r² dependence)',
+            description='Peak sharpening coefficient (1/r² dependence)',
             units='Ų',
             value_spec=AttributeSpec(
                 default=0.0,
@@ -75,7 +72,7 @@ def __init__(self):
         )
         self._damp_particle_diameter = Parameter(
             name='damp_particle_diameter',
-            description='Particle diameter for spherical envelope damping correction in PDF',
+            description='Particle diameter for spherical envelope damping correction',
             units='Å',
             value_spec=AttributeSpec(
                 default=0.0,
@@ -89,49 +86,85 @@ def __init__(self):
     # ------------------------------------------------------------------
 
     @property
-    def damp_q(self):
+    def damp_q(self) -> Parameter:
+        """
+        Q-resolution damping for high-r PDF peak amplitude (Å⁻¹).
+
+        Reading this property returns the underlying ``Parameter``
+        object. Assigning to it updates the parameter value.
+        """
         return self._damp_q
 
     @damp_q.setter
-    def damp_q(self, value):
+    def damp_q(self, value: float) -> None:
         self._damp_q.value = value
 
     @property
-    def broad_q(self):
+    def broad_q(self) -> Parameter:
+        """
+        Quadratic peak broadening from thermal uncertainty (Å⁻²).
+
+        Reading this property returns the underlying ``Parameter``
+        object. Assigning to it updates the parameter value.
+        """
         return self._broad_q
 
     @broad_q.setter
-    def broad_q(self, value):
+    def broad_q(self, value: float) -> None:
         self._broad_q.value = value
 
     @property
     def cutoff_q(self) -> Parameter:
+        """
+        Q-value cutoff for Fourier transform (Å⁻¹).
+
+        Reading this property returns the underlying ``Parameter``
+        object. Assigning to it updates the parameter value.
+        """
         return self._cutoff_q
 
     @cutoff_q.setter
-    def cutoff_q(self, value):
+    def cutoff_q(self, value: float) -> None:
         self._cutoff_q.value = value
 
     @property
     def sharp_delta_1(self) -> Parameter:
+        """
+        PDF peak sharpening coefficient (1/r dependence) (Å).
+
+        Reading this property returns the underlying ``Parameter``
+        object. Assigning to it updates the parameter value.
+        """
         return self._sharp_delta_1
 
     @sharp_delta_1.setter
-    def sharp_delta_1(self, value):
+    def sharp_delta_1(self, value: float) -> None:
         self._sharp_delta_1.value = value
 
     @property
-    def sharp_delta_2(self):
+    def sharp_delta_2(self) -> Parameter:
+        """
+        PDF peak sharpening coefficient (1/r² dependence) (Ų).
+
+        Reading this property returns the underlying ``Parameter``
+        object. Assigning to it updates the parameter value.
+        """
         return self._sharp_delta_2
 
     @sharp_delta_2.setter
-    def sharp_delta_2(self, value):
+    def sharp_delta_2(self, value: float) -> None:
         self._sharp_delta_2.value = value
 
     @property
-    def damp_particle_diameter(self):
+    def damp_particle_diameter(self) -> Parameter:
+        """
+        Particle diameter for spherical envelope damping correction (Å).
+
+        Reading this property returns the underlying ``Parameter``
+        object. Assigning to it updates the parameter value.
+        """
         return self._damp_particle_diameter
 
     @damp_particle_diameter.setter
-    def damp_particle_diameter(self, value):
+    def damp_particle_diameter(self, value: float) -> None:
         self._damp_particle_diameter.value = value
diff --git a/src/easydiffraction/datablocks/experiment/collection.py b/src/easydiffraction/datablocks/experiment/collection.py
index 854b77ad..5cdf3f6b 100644
--- a/src/easydiffraction/datablocks/experiment/collection.py
+++ b/src/easydiffraction/datablocks/experiment/collection.py
@@ -1,4 +1,4 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 """Collection of experiment data blocks."""
 
@@ -11,7 +11,8 @@
 
 
 class Experiments(DatablockCollection):
-    """Collection of Experiment data blocks.
+    """
+    Collection of Experiment data blocks.
 
     Provides convenience constructors for common creation patterns and
     helper methods for simple presentation of collection contents.
@@ -35,14 +36,21 @@ def create(
         radiation_probe: str | None = None,
         scattering_type: str | None = None,
     ) -> None:
-        """Add an experiment without associating a data file.
-
-        Args:
-            name: Experiment identifier.
-            sample_form: Sample form (e.g. ``'powder'``).
-            beam_mode: Beam mode (e.g. ``'constant wavelength'``).
-            radiation_probe: Radiation probe (e.g. ``'neutron'``).
-            scattering_type: Scattering type (e.g. ``'bragg'``).
+        """
+        Add an experiment without associating a data file.
+
+        Parameters
+        ----------
+        name : str
+            Experiment identifier.
+        sample_form : str | None, default=None
+            Sample form (e.g. ``'powder'``).
+        beam_mode : str | None, default=None
+            Beam mode (e.g. ``'constant wavelength'``).
+        radiation_probe : str | None, default=None
+            Radiation probe (e.g. ``'neutron'``).
+        scattering_type : str | None, default=None
+            Scattering type (e.g. ``'bragg'``).
         """
         experiment = ExperimentFactory.from_scratch(
             name=name,
@@ -59,10 +67,13 @@ def add_from_cif_str(
         self,
         cif_str: str,
     ) -> None:
-        """Add an experiment from a CIF string.
+        """
+        Add an experiment from a CIF string.
 
-        Args:
-            cif_str: Full CIF document as a string.
+        Parameters
+        ----------
+        cif_str : str
+            Full CIF document as a string.
         """
         experiment = ExperimentFactory.from_cif_str(cif_str)
         self.add(experiment)
@@ -73,10 +84,13 @@ def add_from_cif_path(
         self,
         cif_path: str,
     ) -> None:
-        """Add an experiment from a CIF file path.
+        """
+        Add an experiment from a CIF file path.
 
-        Args:
-            cif_path(str): Path to a CIF document.
+        Parameters
+        ----------
+        cif_path : str
+            Path to a CIF document.
         """
         experiment = ExperimentFactory.from_cif_path(cif_path)
         self.add(experiment)
@@ -92,15 +106,23 @@ def add_from_data_path(
         radiation_probe: str | None = None,
         scattering_type: str | None = None,
     ) -> None:
-        """Add an experiment from a data file path.
-
-        Args:
-            name: Experiment identifier.
-            data_path: Path to the measured data file.
-            sample_form: Sample form (e.g. ``'powder'``).
-            beam_mode: Beam mode (e.g. ``'constant wavelength'``).
-            radiation_probe: Radiation probe (e.g. ``'neutron'``).
-            scattering_type: Scattering type (e.g. ``'bragg'``).
+        """
+        Add an experiment from a data file path.
+
+        Parameters
+        ----------
+        name : str
+            Experiment identifier.
+        data_path : str
+            Path to the measured data file.
+        sample_form : str | None, default=None
+            Sample form (e.g. ``'powder'``).
+        beam_mode : str | None, default=None
+            Beam mode (e.g. ``'constant wavelength'``).
+        radiation_probe : str | None, default=None
+            Radiation probe (e.g. ``'neutron'``).
+        scattering_type : str | None, default=None
+            Scattering type (e.g. ``'bragg'``).
         """
         experiment = ExperimentFactory.from_data_path(
             name=name,
diff --git a/src/easydiffraction/datablocks/experiment/item/__init__.py b/src/easydiffraction/datablocks/experiment/item/__init__.py
index ffe5775d..35a64fb1 100644
--- a/src/easydiffraction/datablocks/experiment/item/__init__.py
+++ b/src/easydiffraction/datablocks/experiment/item/__init__.py
@@ -1,4 +1,4 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 
 from easydiffraction.datablocks.experiment.item.base import ExperimentBase
diff --git a/src/easydiffraction/datablocks/experiment/item/base.py b/src/easydiffraction/datablocks/experiment/item/base.py
index 24c6ee6e..2dddee44 100644
--- a/src/easydiffraction/datablocks/experiment/item/base.py
+++ b/src/easydiffraction/datablocks/experiment/item/base.py
@@ -1,4 +1,4 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 """Base classes for experiment datablock items."""
 
@@ -34,16 +34,14 @@
 
 
 class ExperimentBase(DatablockItem):
-    """Base class for all experiment datablock items with only core
-    attributes.
-    """
+    """Base class for all experiment datablock items."""
 
     def __init__(
         self,
         *,
         name: str,
         type: ExperimentType,
-    ):
+    ) -> None:
         super().__init__()
         self._name = name
         self._type = type
@@ -58,18 +56,19 @@ def name(self) -> str:
 
     @name.setter
     def name(self, new: str) -> None:
-        """Rename the experiment.
+        """
+        Rename the experiment.
 
-        Args:
-            new: New name for this experiment.
+        Parameters
+        ----------
+        new : str
+            New name for this experiment.
         """
         self._name = new
 
     @property
-    def type(self):  # TODO: Consider another name
-        """Experiment type descriptor (sample form, probe, beam
-        mode).
-        """
+    def type(self) -> object:  # TODO: Consider another name
+        """Experiment type: sample form, probe, beam mode."""
         return self._type
 
     @property
@@ -86,10 +85,18 @@ def show_as_cif(self) -> None:
 
     @abstractmethod
     def _load_ascii_data_to_experiment(self, data_path: str) -> None:
-        """Load ASCII data from file into the experiment data category.
+        """
+        Load ASCII data from file into the experiment data category.
+
+        Parameters
+        ----------
+        data_path : str
+            Path to the ASCII file to load.
 
-        Args:
-            data_path: Path to the ASCII file to load.
+        Raises
+        ------
+        NotImplementedError
+            Subclasses must implement this method.
         """
         raise NotImplementedError()
 
@@ -98,8 +105,9 @@ def _load_ascii_data_to_experiment(self, data_path: str) -> None:
     # ------------------------------------------------------------------
 
     @property
-    def calculator(self):
-        """The active calculator instance for this experiment.
+    def calculator(self) -> object:
+        """
+        The active calculator instance for this experiment.
 
         Auto-resolved on first access from the experiment's data
         category ``calculator_support`` and
@@ -118,11 +126,14 @@ def calculator_type(self) -> str:
 
     @calculator_type.setter
     def calculator_type(self, tag: str) -> None:
-        """Switch to a different calculator backend.
+        """
+        Switch to a different calculator backend.
 
-        Args:
-            tag: Calculator tag (e.g. ``'cryspy'``, ``'crysfml'``,
-                ``'pdffit'``).
+        Parameters
+        ----------
+        tag : str
+            Calculator tag (e.g. ``'cryspy'``, ``'crysfml'``,
+            ``'pdffit'``).
         """
         from easydiffraction.analysis.calculators.factory import CalculatorFactory
 
@@ -140,9 +151,7 @@ def calculator_type(self, tag: str) -> None:
         console.print(tag)
 
     def show_supported_calculator_types(self) -> None:
-        """Print a table of calculator backends supported by this
-        experiment.
-        """
+        """Print a table of supported calculator backends."""
         from easydiffraction.analysis.calculators.factory import CalculatorFactory
 
         supported_tags = self._supported_calculator_tags()
@@ -169,10 +178,7 @@ def show_current_calculator_type(self) -> None:
         console.print(self.calculator_type)
 
     def _resolve_calculator(self) -> None:
-        """Auto-resolve the default calculator from the data category's
-        ``calculator_support`` and
-        ``CalculatorFactory._default_rules``.
-        """
+        """Auto-resolve the default calculator from data category."""
         from easydiffraction.analysis.calculators.factory import CalculatorFactory
 
         tag = CalculatorFactory.default_tag(
@@ -185,7 +191,8 @@ def _resolve_calculator(self) -> None:
         self._calculator_type = tag
 
     def _supported_calculator_tags(self) -> list[str]:
-        """Return calculator tags supported by this experiment.
+        """
+        Return calculator tags supported by this experiment.
 
         Intersects the data category's ``calculator_support`` with
         calculators whose engines are importable.
@@ -231,11 +238,14 @@ def __init__(
 
     @abstractmethod
     def _load_ascii_data_to_experiment(self, data_path: str) -> None:
-        """Load single crystal data from an ASCII file.
+        """
+        Load single crystal data from an ASCII file.
 
-        Args:
-            data_path: Path to data file with columns compatible with
-                the beam mode.
+        Parameters
+        ----------
+        data_path : str
+            Path to data file with columns compatible with the beam
+            mode.
         """
         pass
 
@@ -244,7 +254,7 @@ def _load_ascii_data_to_experiment(self, data_path: str) -> None:
     # ------------------------------------------------------------------
 
     @property
-    def extinction(self):
+    def extinction(self) -> object:
         """Active extinction correction model."""
         return self._extinction
 
@@ -255,10 +265,13 @@ def extinction_type(self) -> str:
 
     @extinction_type.setter
     def extinction_type(self, new_type: str) -> None:
-        """Switch to a different extinction correction model.
+        """
+        Switch to a different extinction correction model.
 
-        Args:
-            new_type: Extinction tag (e.g. ``'shelx'``).
+        Parameters
+        ----------
+        new_type : str
+            Extinction tag (e.g. ``'shelx'``).
         """
         supported_tags = ExtinctionFactory.supported_tags()
         if new_type not in supported_tags:
@@ -288,7 +301,7 @@ def show_current_extinction_type(self) -> None:
     # ------------------------------------------------------------------
 
     @property
-    def linked_crystal(self):
+    def linked_crystal(self) -> object:
         """Linked crystal model for this experiment."""
         return self._linked_crystal
 
@@ -299,10 +312,13 @@ def linked_crystal_type(self) -> str:
 
     @linked_crystal_type.setter
     def linked_crystal_type(self, new_type: str) -> None:
-        """Switch to a different linked-crystal reference type.
+        """
+        Switch to a different linked-crystal reference type.
 
-        Args:
-            new_type: Linked-crystal tag (e.g. ``'default'``).
+        Parameters
+        ----------
+        new_type : str
+            Linked-crystal tag (e.g. ``'default'``).
         """
         supported_tags = LinkedCrystalFactory.supported_tags()
         if new_type not in supported_tags:
@@ -332,7 +348,7 @@ def show_current_linked_crystal_type(self) -> None:
     # ------------------------------------------------------------------
 
     @property
-    def instrument(self):
+    def instrument(self) -> object:
         """Active instrument model for this experiment."""
         return self._instrument
 
@@ -343,10 +359,13 @@ def instrument_type(self) -> str:
 
     @instrument_type.setter
     def instrument_type(self, new_type: str) -> None:
-        """Switch to a different instrument type.
+        """
+        Switch to a different instrument type.
 
-        Args:
-            new_type: Instrument tag (e.g. ``'cwl-sc'``).
+        Parameters
+        ----------
+        new_type : str
+            Instrument tag (e.g. ``'cwl-sc'``).
         """
         supported = InstrumentFactory.supported_for(
             scattering_type=self.type.scattering_type.value,
@@ -384,7 +403,7 @@ def show_current_instrument_type(self) -> None:
     # ------------------------------------------------------------------
 
     @property
-    def data(self):
+    def data(self) -> object:
         """Data collection for this experiment."""
         return self._data
 
@@ -395,10 +414,13 @@ def data_type(self) -> str:
 
     @data_type.setter
     def data_type(self, new_type: str) -> None:
-        """Switch to a different data collection type.
+        """
+        Switch to a different data collection type.
 
-        Args:
-            new_type: Data tag (e.g. ``'bragg-sc'``).
+        Parameters
+        ----------
+        new_type : str
+            Data tag (e.g. ``'bragg-sc'``).
         """
         supported_tags = DataFactory.supported_tags()
         if new_type not in supported_tags:
@@ -454,12 +476,17 @@ def _get_valid_linked_phases(
         self,
         structures: Structures,
     ) -> List[Any]:
-        """Get valid linked phases for this experiment.
+        """
+        Get valid linked phases for this experiment.
 
-        Args:
-            structures: Collection of structures.
+        Parameters
+        ----------
+        structures : Structures
+            Collection of structures.
 
-        Returns:
+        Returns
+        -------
+        List[Any]
             A list of valid linked phases.
         """
         if not self.linked_phases:
@@ -485,16 +512,19 @@ def _get_valid_linked_phases(
 
     @abstractmethod
     def _load_ascii_data_to_experiment(self, data_path: str) -> None:
-        """Load powder diffraction data from an ASCII file.
+        """
+        Load powder diffraction data from an ASCII file.
 
-        Args:
-            data_path: Path to data file with columns compatible with
-                the beam mode (e.g. 2θ/I/σ for CWL, TOF/I/σ for TOF).
+        Parameters
+        ----------
+        data_path : str
+            Path to data file with columns compatible with the beam mode
+            (e.g. 2θ/I/σ for CWL, TOF/I/σ for TOF).
         """
         pass
 
     @property
-    def linked_phases(self):
+    def linked_phases(self) -> object:
         """Collection of phases linked to this experiment."""
         return self._linked_phases
 
@@ -505,10 +535,13 @@ def linked_phases_type(self) -> str:
 
     @linked_phases_type.setter
     def linked_phases_type(self, new_type: str) -> None:
-        """Switch to a different linked-phases collection type.
+        """
+        Switch to a different linked-phases collection type.
 
-        Args:
-            new_type: Linked-phases tag (e.g. ``'default'``).
+        Parameters
+        ----------
+        new_type : str
+            Linked-phases tag (e.g. ``'default'``).
         """
         supported_tags = LinkedPhasesFactory.supported_tags()
         if new_type not in supported_tags:
@@ -534,7 +567,7 @@ def show_current_linked_phases_type(self) -> None:
         console.print(self.linked_phases_type)
 
     @property
-    def excluded_regions(self):
+    def excluded_regions(self) -> object:
         """Collection of excluded regions for the x-grid."""
         return self._excluded_regions
 
@@ -545,10 +578,13 @@ def excluded_regions_type(self) -> str:
 
     @excluded_regions_type.setter
     def excluded_regions_type(self, new_type: str) -> None:
-        """Switch to a different excluded-regions collection type.
+        """
+        Switch to a different excluded-regions collection type.
 
-        Args:
-            new_type: Excluded-regions tag (e.g. ``'default'``).
+        Parameters
+        ----------
+        new_type : str
+            Excluded-regions tag (e.g. ``'default'``).
         """
         supported_tags = ExcludedRegionsFactory.supported_tags()
         if new_type not in supported_tags:
@@ -565,9 +601,7 @@ def excluded_regions_type(self, new_type: str) -> None:
         console.print(new_type)
 
     def show_supported_excluded_regions_types(self) -> None:
-        """Print a table of supported excluded-regions collection
-        types.
-        """
+        """Print a table of supported excluded-regions types."""
         ExcludedRegionsFactory.show_supported()
 
     def show_current_excluded_regions_type(self) -> None:
@@ -580,7 +614,7 @@ def show_current_excluded_regions_type(self) -> None:
     # ------------------------------------------------------------------
 
     @property
-    def data(self):
+    def data(self) -> object:
         """Data collection for this experiment."""
         return self._data
 
@@ -591,10 +625,13 @@ def data_type(self) -> str:
 
     @data_type.setter
     def data_type(self, new_type: str) -> None:
-        """Switch to a different data collection type.
+        """
+        Switch to a different data collection type.
 
-        Args:
-            new_type: Data tag (e.g. ``'bragg-pd-cwl'``).
+        Parameters
+        ----------
+        new_type : str
+            Data tag (e.g. ``'bragg-pd-cwl'``).
         """
         supported_tags = DataFactory.supported_tags()
         if new_type not in supported_tags:
@@ -619,21 +656,24 @@ def show_current_data_type(self) -> None:
         console.print(self.data_type)
 
     @property
-    def peak(self):
+    def peak(self) -> object:
         """Peak category object with profile parameters and mixins."""
         return self._peak
 
     @property
-    def peak_profile_type(self):
+    def peak_profile_type(self) -> object:
         """Currently selected peak profile type enum."""
         return self._peak_profile_type
 
     @peak_profile_type.setter
-    def peak_profile_type(self, new_type: str):
-        """Change the active peak profile type, if supported.
+    def peak_profile_type(self, new_type: str) -> None:
+        """
+        Change the active peak profile type, if supported.
 
-        Args:
-            new_type: New profile type as tag string.
+        Parameters
+        ----------
+        new_type : str
+            New profile type as tag string.
         """
         supported = PeakFactory.supported_for(
             scattering_type=self.type.scattering_type.value,
@@ -659,14 +699,14 @@ def peak_profile_type(self, new_type: str):
         console.paragraph(f"Peak profile type for experiment '{self.name}' changed to")
         console.print(new_type)
 
-    def show_supported_peak_profile_types(self):
+    def show_supported_peak_profile_types(self) -> None:
         """Print available peak profile types for this experiment."""
         PeakFactory.show_supported(
             scattering_type=self.type.scattering_type.value,
             beam_mode=self.type.beam_mode.value,
         )
 
-    def show_current_peak_profile_type(self):
+    def show_current_peak_profile_type(self) -> None:
         """Print the currently selected peak profile type."""
         console.paragraph('Current peak profile type')
         console.print(self.peak_profile_type)
diff --git a/src/easydiffraction/datablocks/experiment/item/bragg_pd.py b/src/easydiffraction/datablocks/experiment/item/bragg_pd.py
index 258085c5..d5b469cf 100644
--- a/src/easydiffraction/datablocks/experiment/item/bragg_pd.py
+++ b/src/easydiffraction/datablocks/experiment/item/bragg_pd.py
@@ -1,4 +1,4 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 
 from __future__ import annotations
@@ -25,9 +25,7 @@
 
 @ExperimentFactory.register
 class BraggPdExperiment(PdExperimentBase):
-    """Standard (Bragg) Powder Diffraction experiment class with
-    specific attributes.
-    """
+    """Standard Bragg powder diffraction experiment."""
 
     type_info = TypeInfo(
         tag='bragg-pd',
@@ -57,8 +55,8 @@ def __init__(
         self._background = BackgroundFactory.create(self._background_type)
 
     def _load_ascii_data_to_experiment(self, data_path: str) -> None:
-        """Load (x, y, sy) data from an ASCII file into the data
-        category.
+        """
+        Load (x, y, sy) data from an ASCII file into the data category.
 
         The file format is space/column separated with 2 or 3 columns:
         ``x y [sy]``. If ``sy`` is missing, it is approximated as
@@ -105,7 +103,7 @@ def _load_ascii_data_to_experiment(self, data_path: str) -> None:
     # ------------------------------------------------------------------
 
     @property
-    def instrument(self):
+    def instrument(self) -> object:
         """Active instrument model for this experiment."""
         return self._instrument
 
@@ -116,10 +114,13 @@ def instrument_type(self) -> str:
 
     @instrument_type.setter
     def instrument_type(self, new_type: str) -> None:
-        """Switch to a different instrument type.
+        """
+        Switch to a different instrument type.
 
-        Args:
-            new_type: Instrument tag (e.g. ``'cwl-pd'``).
+        Parameters
+        ----------
+        new_type : str
+            Instrument tag (e.g. ``'cwl-pd'``).
         """
         supported = InstrumentFactory.supported_for(
             scattering_type=self.type.scattering_type.value,
@@ -157,12 +158,12 @@ def show_current_instrument_type(self) -> None:
     # ------------------------------------------------------------------
 
     @property
-    def background_type(self):
+    def background_type(self) -> object:
         """Current background type enum value."""
         return self._background_type
 
     @background_type.setter
-    def background_type(self, new_type):
+    def background_type(self, new_type: str) -> None:
         """Set a new background type and recreate background object."""
         if self._background_type == new_type:
             console.paragraph(f"Background type for experiment '{self.name}' already set to")
@@ -190,14 +191,15 @@ def background_type(self, new_type):
         console.print(new_type)
 
     @property
-    def background(self):
+    def background(self) -> object:
+        """Active background model for this experiment."""
         return self._background
 
-    def show_supported_background_types(self):
+    def show_supported_background_types(self) -> None:
         """Print a table of supported background types."""
         BackgroundFactory.show_supported()
 
-    def show_current_background_type(self):
+    def show_current_background_type(self) -> None:
         """Print the currently used background type."""
         console.paragraph('Current background type')
         console.print(self.background_type)
diff --git a/src/easydiffraction/datablocks/experiment/item/bragg_sc.py b/src/easydiffraction/datablocks/experiment/item/bragg_sc.py
index e8142e0e..3cb3f8a1 100644
--- a/src/easydiffraction/datablocks/experiment/item/bragg_sc.py
+++ b/src/easydiffraction/datablocks/experiment/item/bragg_sc.py
@@ -1,4 +1,4 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 
 from __future__ import annotations
@@ -23,9 +23,7 @@
 
 @ExperimentFactory.register
 class CwlScExperiment(ScExperimentBase):
-    """Standard (Bragg) constant wavelength single srystal experiment
-    class with specific attributes.
-    """
+    """Bragg constant-wavelength single-crystal experiment."""
 
     type_info = TypeInfo(
         tag='bragg-sc-cwl',
@@ -46,10 +44,11 @@ def __init__(
         super().__init__(name=name, type=type)
 
     def _load_ascii_data_to_experiment(self, data_path: str) -> None:
-        """Load measured data from an ASCII file into the data category.
+        """
+        Load measured data from an ASCII file into the data category.
 
-        The file format is space/column separated with 5 columns:
-        ``h k l Iobs sIobs``.
+        The file format is space/column separated with 5 columns: ``h k
+        l Iobs sIobs``.
         """
         try:
             data = np.loadtxt(data_path)
@@ -87,9 +86,7 @@ def _load_ascii_data_to_experiment(self, data_path: str) -> None:
 
 @ExperimentFactory.register
 class TofScExperiment(ScExperimentBase):
-    """Standard (Bragg) time-of-flight single srystal experiment class
-    with specific attributes.
-    """
+    """Bragg time-of-flight single-crystal experiment."""
 
     type_info = TypeInfo(
         tag='bragg-sc-tof',
@@ -110,10 +107,11 @@ def __init__(
         super().__init__(name=name, type=type)
 
     def _load_ascii_data_to_experiment(self, data_path: str) -> None:
-        """Load measured data from an ASCII file into the data category.
+        """
+        Load measured data from an ASCII file into the data category.
 
-        The file format is space/column separated with 6 columns:
-        ``h k l Iobs sIobs wavelength``.
+        The file format is space/column separated with 6 columns: ``h k
+        l Iobs sIobs wavelength``.
         """
         try:
             data = np.loadtxt(data_path)
diff --git a/src/easydiffraction/datablocks/experiment/item/enums.py b/src/easydiffraction/datablocks/experiment/item/enums.py
index 8d0f153e..2375c38e 100644
--- a/src/easydiffraction/datablocks/experiment/item/enums.py
+++ b/src/easydiffraction/datablocks/experiment/item/enums.py
@@ -1,4 +1,4 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 """Enumerations for experiment configuration (forms, modes, types)."""
 
@@ -13,9 +13,25 @@ class SampleFormEnum(str, Enum):
 
     @classmethod
     def default(cls) -> 'SampleFormEnum':
+        """
+        Return the default sample form (POWDER).
+
+        Returns
+        -------
+        'SampleFormEnum'
+            The default enum member.
+        """
         return cls.POWDER
 
     def description(self) -> str:
+        """
+        Return a human-readable description of this sample form.
+
+        Returns
+        -------
+        str
+            Description string for the current enum member.
+        """
         if self is SampleFormEnum.POWDER:
             return 'Powdered or polycrystalline sample.'
         elif self is SampleFormEnum.SINGLE_CRYSTAL:
@@ -30,9 +46,25 @@ class ScatteringTypeEnum(str, Enum):
 
     @classmethod
     def default(cls) -> 'ScatteringTypeEnum':
+        """
+        Return the default scattering type (BRAGG).
+
+        Returns
+        -------
+        'ScatteringTypeEnum'
+            The default enum member.
+        """
         return cls.BRAGG
 
     def description(self) -> str:
+        """
+        Return a human-readable description of this scattering type.
+
+        Returns
+        -------
+        str
+            Description string for the current enum member.
+        """
         if self is ScatteringTypeEnum.BRAGG:
             return 'Bragg diffraction for conventional structure refinement.'
         elif self is ScatteringTypeEnum.TOTAL:
@@ -47,9 +79,25 @@ class RadiationProbeEnum(str, Enum):
 
     @classmethod
     def default(cls) -> 'RadiationProbeEnum':
+        """
+        Return the default radiation probe (NEUTRON).
+
+        Returns
+        -------
+        'RadiationProbeEnum'
+            The default enum member.
+        """
         return cls.NEUTRON
 
     def description(self) -> str:
+        """
+        Return a human-readable description of this radiation probe.
+
+        Returns
+        -------
+        str
+            Description string for the current enum member.
+        """
         if self is RadiationProbeEnum.NEUTRON:
             return 'Neutron diffraction.'
         elif self is RadiationProbeEnum.XRAY:
@@ -65,9 +113,25 @@ class BeamModeEnum(str, Enum):
 
     @classmethod
     def default(cls) -> 'BeamModeEnum':
+        """
+        Return the default beam mode (CONSTANT_WAVELENGTH).
+
+        Returns
+        -------
+        'BeamModeEnum'
+            The default enum member.
+        """
         return cls.CONSTANT_WAVELENGTH
 
     def description(self) -> str:
+        """
+        Return a human-readable description of this beam mode.
+
+        Returns
+        -------
+        str
+            Description string for the current enum member.
+        """
         if self is BeamModeEnum.CONSTANT_WAVELENGTH:
             return 'Constant wavelength (CW) diffraction.'
         elif self is BeamModeEnum.TIME_OF_FLIGHT:
@@ -104,6 +168,23 @@ def default(
         scattering_type: ScatteringTypeEnum | None = None,
         beam_mode: BeamModeEnum | None = None,
     ) -> 'PeakProfileTypeEnum':
+        """
+        Return the default peak profile type for a given mode.
+
+        Parameters
+        ----------
+        scattering_type : ScatteringTypeEnum | None, default=None
+            Scattering type; defaults to
+            ``ScatteringTypeEnum.default()`` when ``None``.
+        beam_mode : BeamModeEnum | None, default=None
+            Beam mode; defaults to ``BeamModeEnum.default()`` when
+            ``None``.
+
+        Returns
+        -------
+        'PeakProfileTypeEnum'
+            The default profile type for the given combination.
+        """
         if scattering_type is None:
             scattering_type = ScatteringTypeEnum.default()
         if beam_mode is None:
@@ -119,6 +200,14 @@ def default(
         }[(scattering_type, beam_mode)]
 
     def description(self) -> str:
+        """
+        Return a human-readable description of this peak profile type.
+
+        Returns
+        -------
+        str
+            Description string for the current enum member.
+        """
         if self is PeakProfileTypeEnum.PSEUDO_VOIGT:
             return 'Pseudo-Voigt profile'
         elif self is PeakProfileTypeEnum.SPLIT_PSEUDO_VOIGT:
diff --git a/src/easydiffraction/datablocks/experiment/item/factory.py b/src/easydiffraction/datablocks/experiment/item/factory.py
index 3e5aebb5..6406ed30 100644
--- a/src/easydiffraction/datablocks/experiment/item/factory.py
+++ b/src/easydiffraction/datablocks/experiment/item/factory.py
@@ -1,6 +1,7 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
-"""Factory for creating experiment instances from various inputs.
+"""
+Factory for creating experiment instances from various inputs.
 
 Provides individual class methods for each creation pathway:
 ``from_cif_path``, ``from_cif_str``, ``from_data_path``, and
@@ -55,7 +56,7 @@ class ExperimentFactory(FactoryBase):
     }
 
     # TODO: Add to core/factory.py?
-    def __init__(self):
+    def __init__(self) -> None:
         log.error(
             'Experiment objects must be created using class methods such as '
             '`ExperimentFactory.from_cif_str(...)`, etc.'
@@ -74,9 +75,7 @@ def _create_experiment_type(
         radiation_probe: str | None = None,
         scattering_type: str | None = None,
     ) -> ExperimentType:
-        """Construct an ExperimentType, using defaults for omitted
-        values.
-        """
+        """Construct ExperimentType with defaults for omitted values."""
         # Note: validation of input values is done via Descriptor setter
         # methods
 
@@ -95,7 +94,7 @@ def _create_experiment_type(
 
     @classmethod
     @typechecked
-    def _resolve_class(cls, expt_type: ExperimentType):
+    def _resolve_class(cls, expt_type: ExperimentType) -> type:
         """Look up the experiment class from the type enums."""
         tag = cls.default_tag(
             scattering_type=expt_type.scattering_type.value,
@@ -140,16 +139,25 @@ def from_scratch(
         radiation_probe: str | None = None,
         scattering_type: str | None = None,
     ) -> ExperimentBase:
-        """Create an experiment without measured data.
-
-        Args:
-            name: Experiment identifier.
-            sample_form: Sample form (e.g. ``'powder'``).
-            beam_mode: Beam mode (e.g. ``'constant wavelength'``).
-            radiation_probe: Radiation probe (e.g. ``'neutron'``).
-            scattering_type: Scattering type (e.g. ``'bragg'``).
-
-        Returns:
+        """
+        Create an experiment without measured data.
+
+        Parameters
+        ----------
+        name : str
+            Experiment identifier.
+        sample_form : str | None, default=None
+            Sample form (e.g. ``'powder'``).
+        beam_mode : str | None, default=None
+            Beam mode (e.g. ``'constant wavelength'``).
+        radiation_probe : str | None, default=None
+            Radiation probe (e.g. ``'neutron'``).
+        scattering_type : str | None, default=None
+            Scattering type (e.g. ``'bragg'``).
+
+        Returns
+        -------
+        ExperimentBase
             An experiment instance with only metadata.
         """
         expt_type = cls._create_experiment_type(
@@ -169,12 +177,17 @@ def from_cif_str(
         cls,
         cif_str: str,
     ) -> ExperimentBase:
-        """Create an experiment from a CIF string.
+        """
+        Create an experiment from a CIF string.
 
-        Args:
-            cif_str: Full CIF document as a string.
+        Parameters
+        ----------
+        cif_str : str
+            Full CIF document as a string.
 
-        Returns:
+        Returns
+        -------
+        ExperimentBase
             A populated experiment instance.
         """
         doc = document_from_string(cif_str)
@@ -188,12 +201,17 @@ def from_cif_path(
         cls,
         cif_path: str,
     ) -> ExperimentBase:
-        """Create an experiment from a CIF file path.
+        """
+        Create an experiment from a CIF file path.
 
-        Args:
-            cif_path: Path to a CIF file.
+        Parameters
+        ----------
+        cif_path : str
+            Path to a CIF file.
 
-        Returns:
+        Returns
+        -------
+        ExperimentBase
             A populated experiment instance.
         """
         doc = document_from_path(cif_path)
@@ -212,17 +230,27 @@ def from_data_path(
         radiation_probe: str | None = None,
         scattering_type: str | None = None,
     ) -> ExperimentBase:
-        """Create an experiment from a raw data ASCII file.
-
-        Args:
-            name: Experiment identifier.
-            data_path: Path to the measured data file.
-            sample_form: Sample form (e.g. ``'powder'``).
-            beam_mode: Beam mode (e.g. ``'constant wavelength'``).
-            radiation_probe: Radiation probe (e.g. ``'neutron'``).
-            scattering_type: Scattering type (e.g. ``'bragg'``).
-
-        Returns:
+        """
+        Create an experiment from a raw data ASCII file.
+
+        Parameters
+        ----------
+        name : str
+            Experiment identifier.
+        data_path : str
+            Path to the measured data file.
+        sample_form : str | None, default=None
+            Sample form (e.g. ``'powder'``).
+        beam_mode : str | None, default=None
+            Beam mode (e.g. ``'constant wavelength'``).
+        radiation_probe : str | None, default=None
+            Radiation probe (e.g. ``'neutron'``).
+        scattering_type : str | None, default=None
+            Scattering type (e.g. ``'bragg'``).
+
+        Returns
+        -------
+        ExperimentBase
             An experiment instance with measured data attached.
         """
         expt_obj = cls.from_scratch(
diff --git a/src/easydiffraction/datablocks/experiment/item/total_pd.py b/src/easydiffraction/datablocks/experiment/item/total_pd.py
index 881dd0ce..ade11e6f 100644
--- a/src/easydiffraction/datablocks/experiment/item/total_pd.py
+++ b/src/easydiffraction/datablocks/experiment/item/total_pd.py
@@ -1,4 +1,4 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 
 from __future__ import annotations
@@ -38,15 +38,14 @@ def __init__(
         self,
         name: str,
         type: ExperimentType,
-    ):
+    ) -> None:
         super().__init__(name=name, type=type)
 
-    def _load_ascii_data_to_experiment(self, data_path):
-        """Loads x, y, sy values from an ASCII data file into the
-        experiment.
+    def _load_ascii_data_to_experiment(self, data_path: str) -> None:
+        """
+        Load x, y, sy values from an ASCII file into the experiment.
 
-        The file must be structured as:
-            x  y  sy
+        The file must be structured as:     x  y  sy
         """
         try:
             from diffpy.utils.parsers.loaddata import loadData
diff --git a/src/easydiffraction/datablocks/structure/__init__.py b/src/easydiffraction/datablocks/structure/__init__.py
index 429f2648..4e798e20 100644
--- a/src/easydiffraction/datablocks/structure/__init__.py
+++ b/src/easydiffraction/datablocks/structure/__init__.py
@@ -1,2 +1,2 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
diff --git a/src/easydiffraction/datablocks/structure/categories/__init__.py b/src/easydiffraction/datablocks/structure/categories/__init__.py
index 429f2648..4e798e20 100644
--- a/src/easydiffraction/datablocks/structure/categories/__init__.py
+++ b/src/easydiffraction/datablocks/structure/categories/__init__.py
@@ -1,2 +1,2 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
diff --git a/src/easydiffraction/datablocks/structure/categories/atom_sites/__init__.py b/src/easydiffraction/datablocks/structure/categories/atom_sites/__init__.py
index cb4c1750..7bd7b9ad 100644
--- a/src/easydiffraction/datablocks/structure/categories/atom_sites/__init__.py
+++ b/src/easydiffraction/datablocks/structure/categories/atom_sites/__init__.py
@@ -1,4 +1,4 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 
 from easydiffraction.datablocks.structure.categories.atom_sites.default import AtomSite
diff --git a/src/easydiffraction/datablocks/structure/categories/atom_sites/default.py b/src/easydiffraction/datablocks/structure/categories/atom_sites/default.py
index 76d890d5..265c3c62 100644
--- a/src/easydiffraction/datablocks/structure/categories/atom_sites/default.py
+++ b/src/easydiffraction/datablocks/structure/categories/atom_sites/default.py
@@ -1,6 +1,7 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
-"""Atom site category.
+"""
+Atom site category.
 
 Defines :class:`AtomSite` items and :class:`AtomSites` collection used
 in crystallographic structures.
@@ -25,7 +26,8 @@
 
 
 class AtomSite(CategoryItem):
-    """Single atom site with fractional coordinates and ADP.
+    """
+    Single atom site with fractional coordinates and ADP.
 
     Attributes are represented by descriptors to support validation and
     CIF serialization.
@@ -138,19 +140,25 @@ def __init__(self) -> None:
 
     @property
     def _type_symbol_allowed_values(self) -> list[str]:
-        """Return chemical symbols accepted by *cryspy*.
+        """
+        Return chemical symbols accepted by *cryspy*.
 
-        Returns:
-            list[str]: Unique element/isotope symbols from the database.
+        Returns
+        -------
+        list[str]
+            Unique element/isotope symbols from the database.
         """
         return list({key[1] for key in DATABASE['Isotopes']})
 
     @property
     def _wyckoff_letter_allowed_values(self) -> list[str]:
-        """Return allowed Wyckoff-letter symbols.
+        """
+        Return allowed Wyckoff-letter symbols.
 
-        Returns:
-            list[str]: Currently a hard-coded placeholder list.
+        Returns
+        -------
+        list[str]
+            Currently a hard-coded placeholder list.
         """
         # TODO: Need to now current space group. How to access it? Via
         #  parent Cell? Then letters =
@@ -160,10 +168,13 @@ def _wyckoff_letter_allowed_values(self) -> list[str]:
 
     @property
     def _wyckoff_letter_default_value(self) -> str:
-        """Return the default Wyckoff letter.
+        """
+        Return the default Wyckoff letter.
 
-        Returns:
-            str: First element of the allowed values list.
+        Returns
+        -------
+        str
+            First element of the allowed values list.
         """
         # TODO: What to pass as default?
         return self._wyckoff_letter_allowed_values[0]
@@ -174,165 +185,132 @@ def _wyckoff_letter_default_value(self) -> str:
 
     @property
     def label(self) -> StringDescriptor:
-        """Unique label for this atom site.
+        """
+        Unique identifier for the atom site.
 
-        Returns:
-            StringDescriptor: Descriptor holding the site label.
+        Reading this property returns the underlying
+        ``StringDescriptor`` object. Assigning to it updates the
+        parameter value.
         """
         return self._label
 
     @label.setter
     def label(self, value: str) -> None:
-        """Set the atom-site label.
-
-        Args:
-            value (str): New label string.
-        """
         self._label.value = value
 
     @property
     def type_symbol(self) -> StringDescriptor:
-        """Chemical element or isotope symbol.
+        """
+        Chemical symbol of the atom at this site.
 
-        Returns:
-            StringDescriptor: Descriptor holding the type symbol.
+        Reading this property returns the underlying
+        ``StringDescriptor`` object. Assigning to it updates the
+        parameter value.
         """
         return self._type_symbol
 
     @type_symbol.setter
     def type_symbol(self, value: str) -> None:
-        """Set the chemical element or isotope symbol.
-
-        Args:
-            value (str): New type symbol (must be in the *cryspy*
-                database).
-        """
         self._type_symbol.value = value
 
     @property
     def adp_type(self) -> StringDescriptor:
-        """Type of atomic displacement parameter (e.g. ``'Biso'``).
+        """
+        ADP type used (e.g., Biso, Uiso, Uani, Bani).
 
-        Returns:
-            StringDescriptor: Descriptor holding the ADP type.
+        Reading this property returns the underlying
+        ``StringDescriptor`` object. Assigning to it updates the
+        parameter value.
         """
         return self._adp_type
 
     @adp_type.setter
     def adp_type(self, value: str) -> None:
-        """Set the ADP type.
-
-        Args:
-            value (str): New ADP type string.
-        """
         self._adp_type.value = value
 
     @property
     def wyckoff_letter(self) -> StringDescriptor:
-        """Wyckoff letter for the symmetry site.
+        """
+        Wyckoff letter for the atom site symmetry position.
 
-        Returns:
-            StringDescriptor: Descriptor holding the Wyckoff letter.
+        Reading this property returns the underlying
+        ``StringDescriptor`` object. Assigning to it updates the
+        parameter value.
         """
         return self._wyckoff_letter
 
     @wyckoff_letter.setter
     def wyckoff_letter(self, value: str) -> None:
-        """Set the Wyckoff letter.
-
-        Args:
-            value (str): New Wyckoff letter.
-        """
         self._wyckoff_letter.value = value
 
     @property
     def fract_x(self) -> Parameter:
-        """Fractional *x*-coordinate within the unit cell.
+        """
+        Fractional x-coordinate of the atom site within the unit cell.
 
-        Returns:
-            Parameter: Descriptor for the *x* coordinate.
+        Reading this property returns the underlying ``Parameter``
+        object. Assigning to it updates the parameter value.
         """
         return self._fract_x
 
     @fract_x.setter
     def fract_x(self, value: float) -> None:
-        """Set the fractional *x*-coordinate.
-
-        Args:
-            value (float): New *x* coordinate.
-        """
         self._fract_x.value = value
 
     @property
     def fract_y(self) -> Parameter:
-        """Fractional *y*-coordinate within the unit cell.
+        """
+        Fractional y-coordinate of the atom site within the unit cell.
 
-        Returns:
-            Parameter: Descriptor for the *y* coordinate.
+        Reading this property returns the underlying ``Parameter``
+        object. Assigning to it updates the parameter value.
         """
         return self._fract_y
 
     @fract_y.setter
     def fract_y(self, value: float) -> None:
-        """Set the fractional *y*-coordinate.
-
-        Args:
-            value (float): New *y* coordinate.
-        """
         self._fract_y.value = value
 
     @property
     def fract_z(self) -> Parameter:
-        """Fractional *z*-coordinate within the unit cell.
+        """
+        Fractional z-coordinate of the atom site within the unit cell.
 
-        Returns:
-            Parameter: Descriptor for the *z* coordinate.
+        Reading this property returns the underlying ``Parameter``
+        object. Assigning to it updates the parameter value.
         """
         return self._fract_z
 
     @fract_z.setter
     def fract_z(self, value: float) -> None:
-        """Set the fractional *z*-coordinate.
-
-        Args:
-            value (float): New *z* coordinate.
-        """
         self._fract_z.value = value
 
     @property
     def occupancy(self) -> Parameter:
-        """Site occupancy fraction.
+        """
+        Occupancy fraction of the atom type at this site.
 
-        Returns:
-            Parameter: Descriptor for the occupancy (0–1).
+        Reading this property returns the underlying ``Parameter``
+        object. Assigning to it updates the parameter value.
         """
         return self._occupancy
 
     @occupancy.setter
     def occupancy(self, value: float) -> None:
-        """Set the site occupancy.
-
-        Args:
-            value (float): New occupancy fraction.
-        """
         self._occupancy.value = value
 
     @property
     def b_iso(self) -> Parameter:
-        r"""Isotropic atomic displacement parameter (*B*-factor).
+        """
+        Isotropic ADP for the atom site (Ų).
 
-        Returns:
-            Parameter: Descriptor for *B*\_iso (Ų).
+        Reading this property returns the underlying ``Parameter``
+        object. Assigning to it updates the parameter value.
         """
         return self._b_iso
 
     @b_iso.setter
     def b_iso(self, value: float) -> None:
-        r"""Set the isotropic displacement parameter.
-
-        Args:
-            value (float): New *B*\_iso value in Ų.
-        """
         self._b_iso.value = value
 
 
@@ -354,7 +332,8 @@ def __init__(self) -> None:
     # ------------------------------------------------------------------
 
     def _apply_atomic_coordinates_symmetry_constraints(self) -> None:
-        """Apply symmetry rules to fractional coordinates of every site.
+        """
+        Apply symmetry rules to fractional coordinates of every site.
 
         Uses the parent structure's space-group symbol, IT coordinate
         system code and each atom's Wyckoff letter.  Atoms without a
@@ -387,11 +366,14 @@ def _update(
         self,
         called_by_minimizer: bool = False,
     ) -> None:
-        """Recalculate atom sites after a change.
+        """
+        Recalculate atom sites after a change.
 
-        Args:
-            called_by_minimizer (bool): Whether the update was triggered
-                by the fitting minimizer. Currently unused.
+        Parameters
+        ----------
+        called_by_minimizer : bool, default=False
+            Whether the update was triggered by the fitting minimizer.
+            Currently unused.
         """
         del called_by_minimizer
 
diff --git a/src/easydiffraction/datablocks/structure/categories/atom_sites/factory.py b/src/easydiffraction/datablocks/structure/categories/atom_sites/factory.py
index e233d0bd..c91b3dda 100644
--- a/src/easydiffraction/datablocks/structure/categories/atom_sites/factory.py
+++ b/src/easydiffraction/datablocks/structure/categories/atom_sites/factory.py
@@ -1,4 +1,4 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 """Atom-sites factory — delegates entirely to ``FactoryBase``."""
 
diff --git a/src/easydiffraction/datablocks/structure/categories/cell/__init__.py b/src/easydiffraction/datablocks/structure/categories/cell/__init__.py
index 08773b3e..16f6cab2 100644
--- a/src/easydiffraction/datablocks/structure/categories/cell/__init__.py
+++ b/src/easydiffraction/datablocks/structure/categories/cell/__init__.py
@@ -1,4 +1,4 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 
 from easydiffraction.datablocks.structure.categories.cell.default import Cell
diff --git a/src/easydiffraction/datablocks/structure/categories/cell/default.py b/src/easydiffraction/datablocks/structure/categories/cell/default.py
index e07e20e0..53cc98ee 100644
--- a/src/easydiffraction/datablocks/structure/categories/cell/default.py
+++ b/src/easydiffraction/datablocks/structure/categories/cell/default.py
@@ -1,4 +1,4 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 """Unit cell parameters category for structures."""
 
@@ -16,8 +16,8 @@
 
 @CellFactory.register
 class Cell(CategoryItem):
-    """Unit cell with lengths *a*, *b*, *c* and angles *alpha*, *beta*,
-    *gamma*.
+    """
+    Unit cell with lengths a, b, c and angles alpha, beta, gamma.
 
     All six lattice parameters are exposed as :class:`Parameter`
     descriptors supporting validation, fitting and CIF serialization.
@@ -34,7 +34,7 @@ def __init__(self) -> None:
 
         self._length_a = Parameter(
             name='length_a',
-            description='Length of the a axis of the unit cell.',
+            description='Length of the a axis of the unit cell',
             units='Å',
             value_spec=AttributeSpec(
                 default=10.0,
@@ -44,7 +44,7 @@ def __init__(self) -> None:
         )
         self._length_b = Parameter(
             name='length_b',
-            description='Length of the b axis of the unit cell.',
+            description='Length of the b axis of the unit cell',
             units='Å',
             value_spec=AttributeSpec(
                 default=10.0,
@@ -54,7 +54,7 @@ def __init__(self) -> None:
         )
         self._length_c = Parameter(
             name='length_c',
-            description='Length of the c axis of the unit cell.',
+            description='Length of the c axis of the unit cell',
             units='Å',
             value_spec=AttributeSpec(
                 default=10.0,
@@ -64,7 +64,7 @@ def __init__(self) -> None:
         )
         self._angle_alpha = Parameter(
             name='angle_alpha',
-            description='Angle between edges b and c.',
+            description='Angle between edges b and c',
             units='deg',
             value_spec=AttributeSpec(
                 default=90.0,
@@ -74,7 +74,7 @@ def __init__(self) -> None:
         )
         self._angle_beta = Parameter(
             name='angle_beta',
-            description='Angle between edges a and c.',
+            description='Angle between edges a and c',
             units='deg',
             value_spec=AttributeSpec(
                 default=90.0,
@@ -84,7 +84,7 @@ def __init__(self) -> None:
         )
         self._angle_gamma = Parameter(
             name='angle_gamma',
-            description='Angle between edges a and b.',
+            description='Angle between edges a and b',
             units='deg',
             value_spec=AttributeSpec(
                 default=90.0,
@@ -100,7 +100,8 @@ def __init__(self) -> None:
     # ------------------------------------------------------------------
 
     def _apply_cell_symmetry_constraints(self) -> None:
-        """Apply symmetry constraints to cell parameters in place.
+        """
+        Apply symmetry constraints to cell parameters in place.
 
         Uses the parent structure's space-group symbol to determine
         which lattice parameters are dependent and sets them
@@ -132,11 +133,14 @@ def _update(
         self,
         called_by_minimizer: bool = False,
     ) -> None:
-        """Recalculate cell parameters after a change.
+        """
+        Recalculate cell parameters after a change.
 
-        Args:
-            called_by_minimizer (bool): Whether the update was triggered
-                by the fitting minimizer. Currently unused.
+        Parameters
+        ----------
+        called_by_minimizer : bool, default=False
+            Whether the update was triggered by the fitting minimizer.
+            Currently unused.
         """
         del called_by_minimizer  # TODO: ???
 
@@ -148,108 +152,84 @@ def _update(
 
     @property
     def length_a(self) -> Parameter:
-        """Length of the *a* axis.
+        """
+        Length of the a axis of the unit cell (Å).
 
-        Returns:
-            Parameter: Descriptor for lattice parameter *a* (Å).
+        Reading this property returns the underlying ``Parameter``
+        object. Assigning to it updates the parameter value.
         """
         return self._length_a
 
     @length_a.setter
     def length_a(self, value: float) -> None:
-        """Set the length of the *a* axis.
-
-        Args:
-            value (float): New length in ångströms.
-        """
         self._length_a.value = value
 
     @property
     def length_b(self) -> Parameter:
-        """Length of the *b* axis.
+        """
+        Length of the b axis of the unit cell (Å).
 
-        Returns:
-            Parameter: Descriptor for lattice parameter *b* (Å).
+        Reading this property returns the underlying ``Parameter``
+        object. Assigning to it updates the parameter value.
         """
         return self._length_b
 
     @length_b.setter
     def length_b(self, value: float) -> None:
-        """Set the length of the *b* axis.
-
-        Args:
-            value (float): New length in ångströms.
-        """
         self._length_b.value = value
 
     @property
     def length_c(self) -> Parameter:
-        """Length of the *c* axis.
+        """
+        Length of the c axis of the unit cell (Å).
 
-        Returns:
-            Parameter: Descriptor for lattice parameter *c* (Å).
+        Reading this property returns the underlying ``Parameter``
+        object. Assigning to it updates the parameter value.
         """
         return self._length_c
 
     @length_c.setter
     def length_c(self, value: float) -> None:
-        """Set the length of the *c* axis.
-
-        Args:
-            value (float): New length in ångströms.
-        """
         self._length_c.value = value
 
     @property
     def angle_alpha(self) -> Parameter:
-        """Angle between edges *b* and *c*.
+        """
+        Angle between edges b and c (deg).
 
-        Returns:
-            Parameter: Descriptor for angle *α* (degrees).
+        Reading this property returns the underlying ``Parameter``
+        object. Assigning to it updates the parameter value.
         """
         return self._angle_alpha
 
     @angle_alpha.setter
     def angle_alpha(self, value: float) -> None:
-        """Set the angle between edges *b* and *c*.
-
-        Args:
-            value (float): New angle in degrees.
-        """
         self._angle_alpha.value = value
 
     @property
     def angle_beta(self) -> Parameter:
-        """Angle between edges *a* and *c*.
+        """
+        Angle between edges a and c (deg).
 
-        Returns:
-            Parameter: Descriptor for angle *β* (degrees).
+        Reading this property returns the underlying ``Parameter``
+        object. Assigning to it updates the parameter value.
         """
         return self._angle_beta
 
     @angle_beta.setter
     def angle_beta(self, value: float) -> None:
-        """Set the angle between edges *a* and *c*.
-
-        Args:
-            value (float): New angle in degrees.
-        """
         self._angle_beta.value = value
 
     @property
     def angle_gamma(self) -> Parameter:
-        """Angle between edges *a* and *b*.
+        """
+        Angle between edges a and b (deg).
 
-        Returns:
-            Parameter: Descriptor for angle *γ* (degrees).
+        Reading this property returns the underlying ``Parameter``
+        object. Assigning to it updates the parameter value.
         """
         return self._angle_gamma
 
     @angle_gamma.setter
     def angle_gamma(self, value: float) -> None:
-        """Set the angle between edges *a* and *b*.
-
-        Args:
-            value (float): New angle in degrees.
-        """
         self._angle_gamma.value = value
diff --git a/src/easydiffraction/datablocks/structure/categories/cell/factory.py b/src/easydiffraction/datablocks/structure/categories/cell/factory.py
index c5fde941..6817b2d7 100644
--- a/src/easydiffraction/datablocks/structure/categories/cell/factory.py
+++ b/src/easydiffraction/datablocks/structure/categories/cell/factory.py
@@ -1,4 +1,4 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 """Cell factory — delegates entirely to ``FactoryBase``."""
 
diff --git a/src/easydiffraction/datablocks/structure/categories/space_group/__init__.py b/src/easydiffraction/datablocks/structure/categories/space_group/__init__.py
index daf02947..a8b33e62 100644
--- a/src/easydiffraction/datablocks/structure/categories/space_group/__init__.py
+++ b/src/easydiffraction/datablocks/structure/categories/space_group/__init__.py
@@ -1,4 +1,4 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 
 from easydiffraction.datablocks.structure.categories.space_group.default import SpaceGroup
diff --git a/src/easydiffraction/datablocks/structure/categories/space_group/default.py b/src/easydiffraction/datablocks/structure/categories/space_group/default.py
index 7076d272..a91cc554 100644
--- a/src/easydiffraction/datablocks/structure/categories/space_group/default.py
+++ b/src/easydiffraction/datablocks/structure/categories/space_group/default.py
@@ -1,4 +1,4 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 """Space group category for crystallographic structures."""
 
@@ -21,8 +21,8 @@
 
 @SpaceGroupFactory.register
 class SpaceGroup(CategoryItem):
-    """Space group with Hermann–Mauguin symbol and IT coordinate system
-    code.
+    """
+    Space group with H-M symbol and IT coordinate system code.
 
     Holds the space-group symbol (``name_h_m``) and the International
     Tables coordinate-system qualifier (``it_coordinate_system_code``).
@@ -84,28 +84,30 @@ def __init__(self) -> None:
     # ------------------------------------------------------------------
 
     def _reset_it_coordinate_system_code(self) -> None:
-        """Reset the IT coordinate system code to the default for the
-        current group.
-        """
+        """Reset IT coordinate system code to default for this group."""
         self._it_coordinate_system_code.value = self._it_coordinate_system_code_default_value
 
     @property
     def _name_h_m_allowed_values(self) -> list[str]:
-        """Return the list of recognised Hermann–Mauguin short symbols.
+        """
+        Return the list of recognised Hermann–Mauguin short symbols.
 
-        Returns:
-            list[str]: All short H-M symbols known to *cryspy*.
+        Returns
+        -------
+        list[str]
+            All short H-M symbols known to *cryspy*.
         """
         return ACCESIBLE_NAME_HM_SHORT
 
     @property
     def _it_coordinate_system_code_allowed_values(self) -> list[str]:
-        """Return allowed IT coordinate system codes for the current
-        group.
+        """
+        Return allowed IT coordinate system codes for the current group.
 
-        Returns:
-            list[str]: Coordinate-system codes, or ``['']`` when none
-                are defined.
+        Returns
+        -------
+        list[str]
+            Coordinate-system codes, or ``['']`` when none are defined.
         """
         name = self.name_h_m.value
         it_number = get_it_number_by_name_hm_short(name)
@@ -115,10 +117,13 @@ def _it_coordinate_system_code_allowed_values(self) -> list[str]:
 
     @property
     def _it_coordinate_system_code_default_value(self) -> str:
-        """Return the default IT coordinate system code.
+        """
+        Return the default IT coordinate system code.
 
-        Returns:
-            str: First element of the allowed codes list.
+        Returns
+        -------
+        str
+            First element of the allowed codes list.
         """
         return self._it_coordinate_system_code_allowed_values[0]
 
@@ -128,40 +133,31 @@ def _it_coordinate_system_code_default_value(self) -> str:
 
     @property
     def name_h_m(self) -> StringDescriptor:
-        """Hermann–Mauguin symbol of the space group.
+        """
+        Hermann-Mauguin symbol of the space group.
 
-        Returns:
-            StringDescriptor: Descriptor holding the H-M symbol.
+        Reading this property returns the underlying
+        ``StringDescriptor`` object. Assigning to it updates the
+        parameter value.
         """
         return self._name_h_m
 
     @name_h_m.setter
     def name_h_m(self, value: str) -> None:
-        """Set the Hermann–Mauguin symbol and reset the coordinate-
-        system code.
-
-        Args:
-            value (str): New H-M symbol (must be a recognised short
-                symbol).
-        """
         self._name_h_m.value = value
         self._reset_it_coordinate_system_code()
 
     @property
     def it_coordinate_system_code(self) -> StringDescriptor:
-        """International Tables coordinate-system code.
+        """
+        A qualifier identifying which setting in IT is used.
 
-        Returns:
-            StringDescriptor: Descriptor holding the IT code.
+        Reading this property returns the underlying
+        ``StringDescriptor`` object. Assigning to it updates the
+        parameter value.
         """
         return self._it_coordinate_system_code
 
     @it_coordinate_system_code.setter
     def it_coordinate_system_code(self, value: str) -> None:
-        """Set the IT coordinate-system code.
-
-        Args:
-            value (str): New coordinate-system code (must be allowed for
-                the current space group).
-        """
         self._it_coordinate_system_code.value = value
diff --git a/src/easydiffraction/datablocks/structure/categories/space_group/factory.py b/src/easydiffraction/datablocks/structure/categories/space_group/factory.py
index 87807cef..9ef8611d 100644
--- a/src/easydiffraction/datablocks/structure/categories/space_group/factory.py
+++ b/src/easydiffraction/datablocks/structure/categories/space_group/factory.py
@@ -1,4 +1,4 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 """Space-group factory — delegates entirely to ``FactoryBase``."""
 
diff --git a/src/easydiffraction/datablocks/structure/collection.py b/src/easydiffraction/datablocks/structure/collection.py
index ecc8f26e..801b416a 100644
--- a/src/easydiffraction/datablocks/structure/collection.py
+++ b/src/easydiffraction/datablocks/structure/collection.py
@@ -1,4 +1,4 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 """Collection of structure data blocks."""
 
@@ -11,7 +11,8 @@
 
 
 class Structures(DatablockCollection):
-    """Ordered collection of :class:`Structure` instances.
+    """
+    Ordered collection of :class:`Structure` instances.
 
     Provides convenience ``add_from_*`` methods that mirror the
     :class:`StructureFactory` classmethods plus a bare :meth:`add` for
@@ -33,10 +34,13 @@ def create(
         *,
         name: str,
     ) -> None:
-        """Create a minimal structure and add it to the collection.
+        """
+        Create a minimal structure and add it to the collection.
 
-        Args:
-            name (str): Identifier for the new structure.
+        Parameters
+        ----------
+        name : str
+            Identifier for the new structure.
         """
         structure = StructureFactory.from_scratch(name=name)
         self.add(structure)
@@ -47,10 +51,13 @@ def add_from_cif_str(
         self,
         cif_str: str,
     ) -> None:
-        """Create a structure from CIF content and add it.
+        """
+        Create a structure from CIF content and add it.
 
-        Args:
-            cif_str (str): CIF file content as a string.
+        Parameters
+        ----------
+        cif_str : str
+            CIF file content as a string.
         """
         structure = StructureFactory.from_cif_str(cif_str)
         self.add(structure)
@@ -61,10 +68,13 @@ def add_from_cif_path(
         self,
         cif_path: str,
     ) -> None:
-        """Create a structure from a CIF file and add it.
+        """
+        Create a structure from a CIF file and add it.
 
-        Args:
-            cif_path (str): Filesystem path to a CIF file.
+        Parameters
+        ----------
+        cif_path : str
+            Filesystem path to a CIF file.
         """
         structure = StructureFactory.from_cif_path(cif_path)
         self.add(structure)
diff --git a/src/easydiffraction/datablocks/structure/item/__init__.py b/src/easydiffraction/datablocks/structure/item/__init__.py
index 429f2648..4e798e20 100644
--- a/src/easydiffraction/datablocks/structure/item/__init__.py
+++ b/src/easydiffraction/datablocks/structure/item/__init__.py
@@ -1,2 +1,2 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
diff --git a/src/easydiffraction/datablocks/structure/item/base.py b/src/easydiffraction/datablocks/structure/item/base.py
index cd517785..80d8f76a 100644
--- a/src/easydiffraction/datablocks/structure/item/base.py
+++ b/src/easydiffraction/datablocks/structure/item/base.py
@@ -1,4 +1,4 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 """Structure datablock item."""
 
@@ -40,20 +40,26 @@ def __init__(
 
     @property
     def name(self) -> str:
-        """Name identifier for this structure.
+        """
+        Name identifier for this structure.
 
-        Returns:
-            str: The structure's name.
+        Returns
+        -------
+        str
+            The structure's name.
         """
         return self._name
 
     @name.setter
     @typechecked
     def name(self, new: str) -> None:
-        """Set the name identifier for this structure.
+        """
+        Set the name identifier for this structure.
 
-        Args:
-            new (str): New name string.
+        Parameters
+        ----------
+        new : str
+            New name string.
         """
         self._name = new
 
@@ -69,10 +75,13 @@ def cell(self) -> Cell:
     @cell.setter
     @typechecked
     def cell(self, new: Cell) -> None:
-        """Replace the unit-cell category for this structure.
+        """
+        Replace the unit-cell category for this structure.
 
-        Args:
-            new (Cell): New unit-cell instance.
+        Parameters
+        ----------
+        new : Cell
+            New unit-cell instance.
         """
         self._cell = new
 
@@ -83,10 +92,13 @@ def cell_type(self) -> str:
 
     @cell_type.setter
     def cell_type(self, new_type: str) -> None:
-        """Switch to a different unit-cell type.
+        """
+        Switch to a different unit-cell type.
 
-        Args:
-            new_type: Cell tag (e.g. ``'default'``).
+        Parameters
+        ----------
+        new_type : str
+            Cell tag (e.g. ``'default'``).
         """
         supported_tags = CellFactory.supported_tags()
         if new_type not in supported_tags:
@@ -122,10 +134,13 @@ def space_group(self) -> SpaceGroup:
     @space_group.setter
     @typechecked
     def space_group(self, new: SpaceGroup) -> None:
-        """Replace the space-group category for this structure.
+        """
+        Replace the space-group category for this structure.
 
-        Args:
-            new (SpaceGroup): New space-group instance.
+        Parameters
+        ----------
+        new : SpaceGroup
+            New space-group instance.
         """
         self._space_group = new
 
@@ -136,10 +151,13 @@ def space_group_type(self) -> str:
 
     @space_group_type.setter
     def space_group_type(self, new_type: str) -> None:
-        """Switch to a different space-group type.
+        """
+        Switch to a different space-group type.
 
-        Args:
-            new_type: Space-group tag (e.g. ``'default'``).
+        Parameters
+        ----------
+        new_type : str
+            Space-group tag (e.g. ``'default'``).
         """
         supported_tags = SpaceGroupFactory.supported_tags()
         if new_type not in supported_tags:
@@ -175,10 +193,13 @@ def atom_sites(self) -> AtomSites:
     @atom_sites.setter
     @typechecked
     def atom_sites(self, new: AtomSites) -> None:
-        """Replace the atom-sites collection for this structure.
+        """
+        Replace the atom-sites collection for this structure.
 
-        Args:
-            new (AtomSites): New atom-sites collection.
+        Parameters
+        ----------
+        new : AtomSites
+            New atom-sites collection.
         """
         self._atom_sites = new
 
@@ -189,10 +210,13 @@ def atom_sites_type(self) -> str:
 
     @atom_sites_type.setter
     def atom_sites_type(self, new_type: str) -> None:
-        """Switch to a different atom-sites collection type.
+        """
+        Switch to a different atom-sites collection type.
 
-        Args:
-            new_type: Atom-sites tag (e.g. ``'default'``).
+        Parameters
+        ----------
+        new_type : str
+            Atom-sites tag (e.g. ``'default'``).
         """
         supported_tags = AtomSitesFactory.supported_tags()
         if new_type not in supported_tags:
@@ -221,9 +245,7 @@ def show_current_atom_sites_type(self) -> None:
     # ------------------------------------------------------------------
 
     def show(self) -> None:
-        """Display an ASCII projection of the structure on a 2D
-        plane.
-        """
+        """Display an ASCII projection of the structure in 2D."""
         console.paragraph(f"Structure 🧩 '{self.name}'")
         console.print('Not implemented yet.')
 
diff --git a/src/easydiffraction/datablocks/structure/item/factory.py b/src/easydiffraction/datablocks/structure/item/factory.py
index a2067dff..567d26dc 100644
--- a/src/easydiffraction/datablocks/structure/item/factory.py
+++ b/src/easydiffraction/datablocks/structure/item/factory.py
@@ -1,6 +1,7 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
-"""Factory for creating structure instances from various inputs.
+"""
+Factory for creating structure instances from various inputs.
 
 Provides individual class methods for each creation pathway:
 ``from_scratch``, ``from_cif_path``, or ``from_cif_str``.
@@ -26,7 +27,7 @@
 class StructureFactory:
     """Create :class:`Structure` instances from supported inputs."""
 
-    def __init__(self):
+    def __init__(self) -> None:
         log.error(
             'Structure objects must be created using class methods such as '
             '`StructureFactory.from_cif_str(...)`, etc.'
@@ -42,13 +43,18 @@ def _from_gemmi_block(
         cls,
         block: gemmi.cif.Block,
     ) -> Structure:
-        """Build a structure from a single *gemmi* CIF block.
+        """
+        Build a structure from a single *gemmi* CIF block.
 
-        Args:
-            block (gemmi.cif.Block): Parsed CIF data block.
+        Parameters
+        ----------
+        block : gemmi.cif.Block
+            Parsed CIF data block.
 
-        Returns:
-            Structure: A fully populated structure instance.
+        Returns
+        -------
+        Structure
+            A fully populated structure instance.
         """
         name = name_from_block(block)
         structure = Structure(name=name)
@@ -67,13 +73,18 @@ def from_scratch(
         *,
         name: str,
     ) -> Structure:
-        """Create a minimal default structure.
+        """
+        Create a minimal default structure.
 
-        Args:
-            name (str): Identifier for the new structure.
+        Parameters
+        ----------
+        name : str
+            Identifier for the new structure.
 
-        Returns:
-            Structure: An empty structure with default categories.
+        Returns
+        -------
+        Structure
+            An empty structure with default categories.
         """
         return Structure(name=name)
 
@@ -84,13 +95,18 @@ def from_cif_str(
         cls,
         cif_str: str,
     ) -> Structure:
-        """Create a structure by parsing a CIF string.
+        """
+        Create a structure by parsing a CIF string.
 
-        Args:
-            cif_str (str): Raw CIF content.
+        Parameters
+        ----------
+        cif_str : str
+            Raw CIF content.
 
-        Returns:
-            Structure: A populated structure instance.
+        Returns
+        -------
+        Structure
+            A populated structure instance.
         """
         doc = document_from_string(cif_str)
         block = pick_sole_block(doc)
@@ -103,13 +119,18 @@ def from_cif_path(
         cls,
         cif_path: str,
     ) -> Structure:
-        """Create a structure by reading and parsing a CIF file.
+        """
+        Create a structure by reading and parsing a CIF file.
 
-        Args:
-            cif_path (str): Filesystem path to a CIF file.
+        Parameters
+        ----------
+        cif_path : str
+            Filesystem path to a CIF file.
 
-        Returns:
-            Structure: A populated structure instance.
+        Returns
+        -------
+        Structure
+            A populated structure instance.
         """
         doc = document_from_path(cif_path)
         block = pick_sole_block(doc)
diff --git a/src/easydiffraction/display/__init__.py b/src/easydiffraction/display/__init__.py
index 265560b2..25bccda4 100644
--- a/src/easydiffraction/display/__init__.py
+++ b/src/easydiffraction/display/__init__.py
@@ -1,14 +1,15 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2025 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
-"""Display subsystem for tables and plots.
+"""
+Display subsystem for tables and plots.
 
-This package contains user-facing facades and backend implementations
-to render tabular data and plots in different environments.
+This package contains user-facing facades and backend implementations to
+render tabular data and plots in different environments.
 
 - Tables: see :mod:`easydiffraction.display.tables` and the engines in
-        :mod:`easydiffraction.display.tablers`.
-- Plots: see :mod:`easydiffraction.display.plotting` and the engines in
-        :mod:`easydiffraction.display.plotters`.
+:mod:`easydiffraction.display.tablers`. - Plots: see
+:mod:`easydiffraction.display.plotting` and the engines in
+:mod:`easydiffraction.display.plotters`.
 """
 
 # TODO: The following works in Jupyter, but breaks MkDocs builds.
diff --git a/src/easydiffraction/display/base.py b/src/easydiffraction/display/base.py
index d97f7be9..6ffc0698 100644
--- a/src/easydiffraction/display/base.py
+++ b/src/easydiffraction/display/base.py
@@ -1,4 +1,4 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2025 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 """Common base classes for display components and their factories."""
 
@@ -6,7 +6,6 @@
 
 from abc import ABC
 from abc import abstractmethod
-from typing import Any
 from typing import List
 from typing import Tuple
 
@@ -18,14 +17,15 @@
 
 
 class RendererBase(SingletonBase, ABC):
-    """Base class for display components with pluggable engines.
+    """
+    Base class for display components with pluggable engines.
 
     Subclasses provide a factory and a default engine. This class
     manages the active backend instance and exposes helpers to inspect
     supported engines in a table-friendly format.
     """
 
-    def __init__(self):
+    def __init__(self) -> None:
         self._engine = self._default_engine()
         self._backend = self._factory().create(self._engine)
 
@@ -43,10 +43,27 @@ def _default_engine(cls) -> str:
 
     @property
     def engine(self) -> str:
+        """
+        Return the name of the currently active rendering engine.
+
+        Returns
+        -------
+        str
+            Identifier of the active engine.
+        """
         return self._engine
 
     @engine.setter
     def engine(self, new_engine: str) -> None:
+        """
+        Switch to a different rendering engine.
+
+        Parameters
+        ----------
+        new_engine : str
+            Identifier of the engine to activate.  Must be a key
+            returned by ``_factory()._registry()``.
+        """
         if new_engine == self._engine:
             log.info(f"Engine is already set to '{new_engine}'. No change made.")
             return
@@ -90,18 +107,25 @@ class RendererFactoryBase(ABC):
     """Base factory that manages discovery and creation of backends."""
 
     @classmethod
-    def create(cls, engine_name: str) -> Any:
-        """Create a backend instance for the given engine.
+    def create(cls, engine_name: str) -> object:
+        """
+        Create a backend instance for the given engine.
 
-        Args:
-            engine_name: Identifier of the engine to instantiate as
-                listed in ``_registry()``.
+        Parameters
+        ----------
+        engine_name : str
+            Identifier of the engine to instantiate as listed in
+            ``_registry()``.
 
-        Returns:
+        Returns
+        -------
+        object
             A new backend instance corresponding to ``engine_name``.
 
-        Raises:
-            ValueError: If the engine name is not supported.
+        Raises
+        ------
+        ValueError
+            If the engine name is not supported.
         """
         registry = cls._registry()
         if engine_name not in registry:
@@ -117,16 +141,15 @@ def supported_engines(cls) -> List[str]:
 
     @classmethod
     def descriptions(cls) -> List[Tuple[str, str]]:
-        """Return pairs of engine name and human-friendly
-        description.
-        """
+        """Return (name, description) pairs for each engine."""
         items = cls._registry().items()
         return [(name, config.get('description')) for name, config in items]
 
     @classmethod
     @abstractmethod
     def _registry(cls) -> dict:
-        """Return engine registry. Implementations must provide this.
+        """
+        Return engine registry. Implementations must provide this.
 
         The returned mapping should have keys as engine names and values
         as a config dict with 'description' and 'class'. Lazy imports
diff --git a/src/easydiffraction/display/plotters/__init__.py b/src/easydiffraction/display/plotters/__init__.py
index 14dae26a..09931ae8 100644
--- a/src/easydiffraction/display/plotters/__init__.py
+++ b/src/easydiffraction/display/plotters/__init__.py
@@ -1,10 +1,11 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2025 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
-"""Plotting backends.
+"""
+Plotting backends.
 
 This subpackage implements plotting engines used by the high-level
 plotting facade:
 
-- :mod:`.ascii` for terminal-friendly ASCII plots.
-- :mod:`.plotly` for interactive plots in notebooks or browsers.
+- :mod:`.ascii` for terminal-friendly ASCII plots. - :mod:`.plotly` for
+interactive plots in notebooks or browsers.
 """
diff --git a/src/easydiffraction/display/plotters/ascii.py b/src/easydiffraction/display/plotters/ascii.py
index 7b5ff6a8..8735a8a0 100644
--- a/src/easydiffraction/display/plotters/ascii.py
+++ b/src/easydiffraction/display/plotters/ascii.py
@@ -1,10 +1,11 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
-"""ASCII plotting backend.
+"""
+ASCII plotting backend.
 
-Renders compact line charts in the terminal using
-``asciichartpy``. This backend is well suited for quick feedback in
-CLI environments and keeps a consistent API with other plotters.
+Renders compact line charts in the terminal using ``asciichartpy``. This
+backend is well suited for quick feedback in CLI environments and keeps
+a consistent API with other plotters.
 """
 
 import asciichartpy
@@ -25,16 +26,21 @@
 class AsciiPlotter(PlotterBase):
     """Terminal-based plotter using ASCII art."""
 
-    def _get_legend_item(self, label):
-        """Return a colored legend entry for a given series label.
+    def _get_legend_item(self, label: str) -> str:
+        """
+        Return a colored legend entry for a given series label.
 
-        The legend uses a colored line matching the series color and
-        the human-readable name from :data:`SERIES_CONFIG`.
+        The legend uses a colored line matching the series color and the
+        human-readable name from :data:`SERIES_CONFIG`.
 
-        Args:
-            label: Series identifier (e.g., ``'meas'``).
+        Parameters
+        ----------
+        label : str
+            Series identifier (e.g., ``'meas'``).
 
-        Returns:
+        Returns
+        -------
+        str
             A formatted legend string with color escapes.
         """
         color_start = DEFAULT_COLORS[label]
@@ -46,27 +52,34 @@ def _get_legend_item(self, label):
 
     def plot_powder(
         self,
-        x,
-        y_series,
-        labels,
-        axes_labels,
-        title,
-        height=None,
-    ):
-        """Render a line plot for powder diffraction data.
+        x: object,
+        y_series: object,
+        labels: object,
+        axes_labels: object,
+        title: str,
+        height: int | None = None,
+    ) -> None:
+        """
+        Render a line plot for powder diffraction data.
 
         Suitable for powder diffraction data where intensity is plotted
         against an x-axis variable (2θ, TOF, d-spacing). Uses ASCII
         characters for terminal display.
 
-        Args:
-            x: 1D array-like of x values (only used for range
-                display).
-            y_series: Sequence of y arrays to plot.
-            labels: Series identifiers corresponding to y_series.
-            axes_labels: Ignored; kept for API compatibility.
-            title: Figure title printed above the chart.
-            height: Number of text rows to allocate for the chart.
+        Parameters
+        ----------
+        x : object
+            1D array-like of x values (only used for range display).
+        y_series : object
+            Sequence of y arrays to plot.
+        labels : object
+            Series identifiers corresponding to y_series.
+        axes_labels : object
+            Ignored; kept for API compatibility.
+        title : str
+            Figure title printed above the chart.
+        height : int | None, default=None
+            Number of text rows to allocate for the chart.
         """
         # Intentionally unused; kept for a consistent display API
         del axes_labels
@@ -92,26 +105,34 @@ def plot_powder(
 
     def plot_single_crystal(
         self,
-        x_calc,
-        y_meas,
-        y_meas_su,
-        axes_labels,
-        title,
-        height=None,
-    ):
-        """Render a scatter plot for single crystal diffraction data.
+        x_calc: object,
+        y_meas: object,
+        y_meas_su: object,
+        axes_labels: object,
+        title: str,
+        height: int | None = None,
+    ) -> None:
+        """
+        Render a scatter plot for single crystal diffraction data.
 
         Creates an ASCII scatter plot showing measured vs calculated
         values with a diagonal reference line.
 
-        Args:
-            x_calc: 1D array-like of calculated values (x-axis).
-            y_meas: 1D array-like of measured values (y-axis).
-            y_meas_su: 1D array-like of measurement uncertainties
-                (ignored in ASCII mode).
-            axes_labels: Pair of strings for the x and y titles.
-            title: Figure title.
-            height: Number of text rows for the chart (default: 15).
+        Parameters
+        ----------
+        x_calc : object
+            1D array-like of calculated values (x-axis).
+        y_meas : object
+            1D array-like of measured values (y-axis).
+        y_meas_su : object
+            1D array-like of measurement uncertainties (ignored in ASCII
+            mode).
+        axes_labels : object
+            Pair of strings for the x and y titles.
+        title : str
+            Figure title.
+        height : int | None, default=None
+            Number of text rows for the chart (default: 15).
         """
         # Intentionally unused; ASCII scatter doesn't show error bars
         del y_meas_su
diff --git a/src/easydiffraction/display/plotters/base.py b/src/easydiffraction/display/plotters/base.py
index 7220dfeb..d7ca594c 100644
--- a/src/easydiffraction/display/plotters/base.py
+++ b/src/easydiffraction/display/plotters/base.py
@@ -1,4 +1,4 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 """Abstract base and shared constants for plotting backends."""
 
@@ -18,10 +18,11 @@
 
 
 class XAxisType(str, Enum):
-    """X-axis types for diffraction plots.
+    """
+    X-axis types for diffraction plots.
 
-    Values match attribute names in data models for direct use
-    with ``getattr(pattern, x_axis)``.
+    Values match attribute names in data models for direct use with
+    ``getattr(pattern, x_axis)``.
     """
 
     TWO_THETA = 'two_theta'
@@ -151,64 +152,80 @@ class XAxisType(str, Enum):
 
 
 class PlotterBase(ABC):
-    """Abstract base for plotting backends.
+    """
+    Abstract base for plotting backends.
 
     Implementations accept x values, multiple y-series, optional labels
     and render a plot to the chosen medium.
 
-    Two main plot types are supported:
-    - ``plot_powder``: Line plots for powder diffraction patterns
-      (intensity vs. 2θ/TOF/d-spacing).
-    - ``plot_single_crystal``: Scatter plots comparing measured vs.
-      calculated values (e.g., F²meas vs F²calc for single crystal).
+    Two main plot types are supported: - ``plot_powder``: Line plots for
+    powder diffraction patterns   (intensity vs. 2θ/TOF/d-spacing). -
+    ``plot_single_crystal``: Scatter plots comparing measured vs.
+    calculated values (e.g., F²meas vs F²calc for single crystal).
     """
 
     @abstractmethod
     def plot_powder(
         self,
-        x,
-        y_series,
-        labels,
-        axes_labels,
-        title,
-        height,
-    ):
-        """Render a line plot for powder diffraction data.
+        x: object,
+        y_series: object,
+        labels: object,
+        axes_labels: object,
+        title: str,
+        height: int | None,
+    ) -> None:
+        """
+        Render a line plot for powder diffraction data.
 
         Suitable for powder diffraction data where intensity is plotted
         against an x-axis variable (2θ, TOF, d-spacing).
 
-        Args:
-            x: 1D array of x-axis values.
-            y_series: Sequence of y arrays to plot.
-            labels: Identifiers corresponding to y_series.
-            axes_labels: Pair of strings for the x and y titles.
-            title: Figure title.
-            height: Backend-specific height (text rows or pixels).
+        Parameters
+        ----------
+        x : object
+            1D array of x-axis values.
+        y_series : object
+            Sequence of y arrays to plot.
+        labels : object
+            Identifiers corresponding to y_series.
+        axes_labels : object
+            Pair of strings for the x and y titles.
+        title : str
+            Figure title.
+        height : int | None
+            Backend-specific height (text rows or pixels).
         """
         pass
 
     @abstractmethod
     def plot_single_crystal(
         self,
-        x_calc,
-        y_meas,
-        y_meas_su,
-        axes_labels,
-        title,
-        height,
-    ):
-        """Render a scatter plot for single crystal diffraction data.
+        x_calc: object,
+        y_meas: object,
+        y_meas_su: object,
+        axes_labels: object,
+        title: str,
+        height: int | None,
+    ) -> None:
+        """
+        Render a scatter plot for single crystal diffraction data.
 
         Suitable for single crystal diffraction data where measured
         values are plotted against calculated values with error bars.
 
-        Args:
-            x_calc: 1D array of calculated values (x-axis).
-            y_meas: 1D array of measured values (y-axis).
-            y_meas_su: 1D array of measurement uncertainties.
-            axes_labels: Pair of strings for the x and y titles.
-            title: Figure title.
-            height: Backend-specific height (text rows or pixels).
+        Parameters
+        ----------
+        x_calc : object
+            1D array of calculated values (x-axis).
+        y_meas : object
+            1D array of measured values (y-axis).
+        y_meas_su : object
+            1D array of measurement uncertainties.
+        axes_labels : object
+            Pair of strings for the x and y titles.
+        title : str
+            Figure title.
+        height : int | None
+            Backend-specific height (text rows or pixels).
         """
         pass
diff --git a/src/easydiffraction/display/plotters/plotly.py b/src/easydiffraction/display/plotters/plotly.py
index bf2b4907..4df79cf0 100644
--- a/src/easydiffraction/display/plotters/plotly.py
+++ b/src/easydiffraction/display/plotters/plotly.py
@@ -1,6 +1,7 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
-"""Plotly plotting backend.
+"""
+Plotly plotting backend.
 
 Provides an interactive plotting implementation using Plotly. In
 notebooks, figures are displayed inline; in other environments a browser
@@ -38,19 +39,25 @@ class PlotlyPlotter(PlotterBase):
 
     def _get_powder_trace(
         self,
-        x,
-        y,
-        label,
-    ):
-        """Create a Plotly trace for powder diffraction data.
-
-        Args:
-            x: 1D array-like of x-axis values.
-            y: 1D array-like of y-axis values.
-            label: Series identifier (``'meas'``, ``'calc'``, or
-                ``'resid'``).
-
-        Returns:
+        x: object,
+        y: object,
+        label: str,
+    ) -> object:
+        """
+        Create a Plotly trace for powder diffraction data.
+
+        Parameters
+        ----------
+        x : object
+            1D array-like of x-axis values.
+        y : object
+            1D array- like of y-axis values.
+        label : str
+            Series identifier (``'meas'``, ``'calc'``, or ``'resid'``).
+
+        Returns
+        -------
+        object
             A configured :class:`plotly.graph_objects.Scatter` trace.
         """
         mode = SERIES_CONFIG[label]['mode']
@@ -70,18 +77,25 @@ def _get_powder_trace(
 
     def _get_single_crystal_trace(
         self,
-        x_calc,
-        y_meas,
-        y_meas_su,
-    ):
-        """Create a Plotly trace for single crystal diffraction data.
-
-        Args:
-            x_calc: 1D array-like of calculated values (x-axis).
-            y_meas: 1D array-like of measured values (y-axis).
-            y_meas_su: 1D array-like of measurement uncertainties.
-
-        Returns:
+        x_calc: object,
+        y_meas: object,
+        y_meas_su: object,
+    ) -> object:
+        """
+        Create a Plotly trace for single crystal diffraction data.
+
+        Parameters
+        ----------
+        x_calc : object
+            1D array-like of calculated values (x-axis).
+        y_meas : object
+            1D array-like of measured values (y-axis).
+        y_meas_su : object
+            1D array-like of measurement uncertainties.
+
+        Returns
+        -------
+        object
             A configured :class:`plotly.graph_objects.Scatter` trace
             with markers and error bars.
         """
@@ -105,13 +119,16 @@ def _get_single_crystal_trace(
 
         return trace
 
-    def _get_diagonal_shape(self):
-        """Create a diagonal reference line shape.
+    def _get_diagonal_shape(self) -> dict:
+        """
+        Create a diagonal reference line shape.
 
         Returns a y=x diagonal line spanning the plot area using paper
         coordinates (0,0) to (1,1).
 
-        Returns:
+        Returns
+        -------
+        dict
             A dict configuring a diagonal line shape.
         """
         return dict(
@@ -126,10 +143,13 @@ def _get_diagonal_shape(self):
             line=dict(width=0.5),
         )
 
-    def _get_config(self):
-        """Return the Plotly figure configuration.
+    def _get_config(self) -> dict:
+        """
+        Return the Plotly figure configuration.
 
-        Returns:
+        Returns
+        -------
+        dict
             A dict with display and mode bar settings.
         """
         return dict(
@@ -145,16 +165,22 @@ def _get_config(self):
 
     def _get_figure(
         self,
-        data,
-        layout,
-    ):
-        """Create and configure a Plotly figure.
-
-        Args:
-            data: List of traces to include in the figure.
-            layout: Layout configuration dict.
-
-        Returns:
+        data: object,
+        layout: object,
+    ) -> object:
+        """
+        Create and configure a Plotly figure.
+
+        Parameters
+        ----------
+        data : object
+            List of traces to include in the figure.
+        layout : object
+            Layout configuration dict.
+
+        Returns
+        -------
+        object
             A configured :class:`plotly.graph_objects.Figure`.
         """
         fig = go.Figure(data=data, layout=layout)
@@ -166,15 +192,18 @@ def _get_figure(
 
     def _show_figure(
         self,
-        fig,
-    ):
-        """Display a Plotly figure.
+        fig: object,
+    ) -> None:
+        """
+        Display a Plotly figure.
 
         Renders the figure using the appropriate method for the current
         environment (browser for PyCharm, inline HTML for Jupyter).
 
-        Args:
-            fig: A :class:`plotly.graph_objects.Figure` to display.
+        Parameters
+        ----------
+        fig : object
+            A :class:`plotly.graph_objects.Figure` to display.
         """
         config = self._get_config()
 
@@ -191,18 +220,25 @@ def _show_figure(
 
     def _get_layout(
         self,
-        title,
-        axes_labels,
-        **kwargs,
-    ):
-        """Create a Plotly layout configuration.
-
-        Args:
-            title: Figure title.
-            axes_labels: Pair of strings for the x and y titles.
-            **kwargs: Additional layout parameters (e.g., shapes).
-
-        Returns:
+        title: str,
+        axes_labels: object,
+        **kwargs: object,
+    ) -> object:
+        """
+        Create a Plotly layout configuration.
+
+        Parameters
+        ----------
+        title : str
+            Figure title.
+        axes_labels : object
+            Pair of strings for the x and y titles.
+        **kwargs : object
+            Additional layout parameters (e.g., shapes).
+
+        Returns
+        -------
+        object
             A configured :class:`plotly.graph_objects.Layout`.
         """
         return go.Layout(
@@ -238,25 +274,33 @@ def _get_layout(
 
     def plot_powder(
         self,
-        x,
-        y_series,
-        labels,
-        axes_labels,
-        title,
-        height=None,
-    ):
-        """Render a line plot for powder diffraction data.
+        x: object,
+        y_series: object,
+        labels: object,
+        axes_labels: object,
+        title: str,
+        height: int | None = None,
+    ) -> None:
+        """
+        Render a line plot for powder diffraction data.
 
         Suitable for powder diffraction data where intensity is plotted
         against an x-axis variable (2θ, TOF, d-spacing).
 
-        Args:
-            x: 1D array-like of x-axis values.
-            y_series: Sequence of y arrays to plot.
-            labels: Series identifiers corresponding to y_series.
-            axes_labels: Pair of strings for the x and y titles.
-            title: Figure title.
-            height: Ignored; Plotly auto-sizes based on renderer.
+        Parameters
+        ----------
+        x : object
+            1D array-like of x-axis values.
+        y_series : object
+            Sequence of y arrays to plot.
+        labels : object
+            Series identifiers corresponding to y_series.
+        axes_labels : object
+            Pair of strings for the x and y titles.
+        title : str
+            Figure title.
+        height : int | None, default=None
+            Ignored; Plotly auto-sizes based on renderer.
         """
         # Intentionally unused; accepted for API compatibility
         del height
@@ -277,26 +321,34 @@ def plot_powder(
 
     def plot_single_crystal(
         self,
-        x_calc,
-        y_meas,
-        y_meas_su,
-        axes_labels,
-        title,
-        height=None,
-    ):
-        """Render a scatter plot for single crystal diffraction data.
+        x_calc: object,
+        y_meas: object,
+        y_meas_su: object,
+        axes_labels: object,
+        title: str,
+        height: int | None = None,
+    ) -> None:
+        """
+        Render a scatter plot for single crystal diffraction data.
 
         Suitable for single crystal diffraction data where measured
-        values are plotted against calculated values with error bars
-        and a diagonal reference line.
-
-        Args:
-            x_calc: 1D array-like of calculated values (x-axis).
-            y_meas: 1D array-like of measured values (y-axis).
-            y_meas_su: 1D array-like of measurement uncertainties.
-            axes_labels: Pair of strings for the x and y titles.
-            title: Figure title.
-            height: Ignored; Plotly auto-sizes based on renderer.
+        values are plotted against calculated values with error bars and
+        a diagonal reference line.
+
+        Parameters
+        ----------
+        x_calc : object
+            1D array-like of calculated values (x-axis).
+        y_meas : object
+            1D array-like of measured values (y-axis).
+        y_meas_su : object
+            1D array-like of measurement uncertainties.
+        axes_labels : object
+            Pair of strings for the x and y titles.
+        title : str
+            Figure title.
+        height : int | None, default=None
+            Ignored; Plotly auto-sizes based on renderer.
         """
         # Intentionally unused; accepted for API compatibility
         del height
diff --git a/src/easydiffraction/display/plotting.py b/src/easydiffraction/display/plotting.py
index 90d54261..ec8e1d5c 100644
--- a/src/easydiffraction/display/plotting.py
+++ b/src/easydiffraction/display/plotting.py
@@ -1,6 +1,7 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2025 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
-"""Plotting facade for measured and calculated patterns.
+"""
+Plotting facade for measured and calculated patterns.
 
 Uses the common :class:`RendererBase` so plotters and tablers share a
 consistent configuration surface and engine handling.
@@ -28,6 +29,8 @@
 
 
 class PlotterEngineEnum(str, Enum):
+    """Available plotting engine backends."""
+
     ASCII = 'asciichartpy'
     PLOTLY = 'plotly'
 
@@ -56,7 +59,7 @@ class Plotter(RendererBase):
     #  Private special methods
     # ------------------------------------------------------------------
 
-    def __init__(self):
+    def __init__(self) -> None:
         super().__init__()
         # X-axis limits
         self._x_min = DEFAULT_MIN
@@ -80,17 +83,30 @@ def _default_engine(cls) -> str:
     #  Private helper methods
     # ------------------------------------------------------------------
 
-    def _auto_x_range_for_ascii(self, pattern, x_array, x_min, x_max):
-        """For the ASCII engine, narrow the range around the tallest
-        peak.
-
-        Args:
-            pattern: Data pattern object (needs ``intensity_meas``).
-            x_array: Full x-axis array.
-            x_min: Current minimum (may be ``None``).
-            x_max: Current maximum (may be ``None``).
-
-        Returns:
+    def _auto_x_range_for_ascii(
+        self,
+        pattern: object,
+        x_array: object,
+        x_min: object,
+        x_max: object,
+    ) -> tuple:
+        """
+        For the ASCII engine, narrow the range around the tallest peak.
+
+        Parameters
+        ----------
+        pattern : object
+            Data pattern object (needs ``intensity_meas``).
+        x_array : object
+            Full x-axis array.
+        x_min : object
+            Current minimum (may be ``None``).
+        x_max : object
+            Current maximum (may be ``None``).
+
+        Returns
+        -------
+        tuple
             Tuple of ``(x_min, x_max)``, possibly narrowed.
         """
         if self._engine == 'asciichartpy' and (x_min is None or x_max is None):
@@ -104,21 +120,28 @@ def _auto_x_range_for_ascii(self, pattern, x_array, x_min, x_max):
 
     def _filtered_y_array(
         self,
-        y_array,
-        x_array,
-        x_min,
-        x_max,
-    ):
-        """Filter an array by the inclusive x-range limits.
-
-        Args:
-            y_array: 1D array-like of y values.
-            x_array: 1D array-like of x values (same length as
-                ``y_array``).
-            x_min: Minimum x limit (or ``None`` to use default).
-            x_max: Maximum x limit (or ``None`` to use default).
-
-        Returns:
+        y_array: object,
+        x_array: object,
+        x_min: object,
+        x_max: object,
+    ) -> object:
+        """
+        Filter an array by the inclusive x-range limits.
+
+        Parameters
+        ----------
+        y_array : object
+            1D array-like of y values.
+        x_array : object
+            1D array-like of x values (same length as ``y_array``).
+        x_min : object
+            Minimum x limit (or ``None`` to use default).
+        x_max : object
+            Maximum x limit (or ``None`` to use default).
+
+        Returns
+        -------
+        object
             Filtered ``y_array`` values where ``x_array`` lies within
             ``[x_min, x_max]``.
         """
@@ -132,39 +155,55 @@ def _filtered_y_array(
 
         return filtered_y_array
 
-    def _get_axes_labels(self, sample_form, scattering_type, x_axis):
-        """Look up axis labels for the given experiment / x-axis
-        combination.
-        """
+    def _get_axes_labels(
+        self,
+        sample_form: object,
+        scattering_type: object,
+        x_axis: object,
+    ) -> list:
+        """Look up axis labels for the experiment / x-axis."""
         return DEFAULT_AXES_LABELS[(sample_form, scattering_type, x_axis)]
 
     def _prepare_powder_data(
         self,
-        pattern,
-        expt_name,
-        expt_type,
-        x_min,
-        x_max,
-        x,
-        need_meas=False,
-        need_calc=False,
-        show_residual=False,
-    ):
-        """Validate, resolve axes, auto-range, and filter arrays.
-
-        Args:
-            pattern: Data pattern object with intensity arrays.
-            expt_name: Experiment name for error messages.
-            expt_type: Experiment type with sample_form, scattering,
-                and beam enums.
-            x_min: Optional minimum x-axis limit.
-            x_max: Optional maximum x-axis limit.
-            x: Explicit x-axis type or ``None``.
-            need_meas: Whether ``intensity_meas`` is required.
-            need_calc: Whether ``intensity_calc`` is required.
-            show_residual: If ``True``, compute meas − calc residual.
-
-        Returns:
+        pattern: object,
+        expt_name: str,
+        expt_type: object,
+        x_min: object,
+        x_max: object,
+        x: object,
+        need_meas: bool = False,
+        need_calc: bool = False,
+        show_residual: bool = False,
+    ) -> dict | None:
+        """
+        Validate, resolve axes, auto-range, and filter arrays.
+
+        Parameters
+        ----------
+        pattern : object
+            Data pattern object with intensity arrays.
+        expt_name : str
+            Experiment name for error messages.
+        expt_type : object
+            Experiment type with sample_form, scattering, and beam
+            enums.
+        x_min : object
+            Optional minimum x-axis limit.
+        x_max : object
+            Optional maximum x-axis limit.
+        x : object
+            Explicit x-axis type or ``None``.
+        need_meas : bool, default=False
+            Whether ``intensity_meas`` is required.
+        need_calc : bool, default=False
+            Whether ``intensity_calc`` is required.
+        show_residual : bool, default=False
+            If ``True``, compute meas − calc residual.
+
+        Returns
+        -------
+        dict | None
             A dict with keys ``x_filtered``, ``y_series``, ``y_labels``,
             ``axes_labels``, and ``x_axis``; or ``None`` when a required
             array is missing.
@@ -222,15 +261,21 @@ def _prepare_powder_data(
             'x_axis': x_axis,
         }
 
-    def _resolve_x_axis(self, expt_type, x):
-        """Determine the x-axis type from experiment metadata.
-
-        Args:
-            expt_type: Experiment type with sample_form,
-                scattering_type, and beam_mode enums.
-            x: Explicit x-axis type or ``None`` to auto-detect.
-
-        Returns:
+    def _resolve_x_axis(self, expt_type: object, x: object) -> tuple:
+        """
+        Determine the x-axis type from experiment metadata.
+
+        Parameters
+        ----------
+        expt_type : object
+            Experiment type with sample_form, scattering_type, and
+            beam_mode enums.
+        x : object
+            Explicit x-axis type or ``None`` to auto-detect.
+
+        Returns
+        -------
+        tuple
             Tuple of ``(x_axis, x_name, sample_form, scattering_type,
             beam_mode)``.
         """
@@ -246,16 +291,19 @@ def _resolve_x_axis(self, expt_type, x):
     # ------------------------------------------------------------------
 
     @property
-    def x_min(self):
+    def x_min(self) -> float:
         """Minimum x-axis limit."""
         return self._x_min
 
     @x_min.setter
-    def x_min(self, value):
-        """Set the minimum x-axis limit.
+    def x_min(self, value: object) -> None:
+        """
+        Set the minimum x-axis limit.
 
-        Args:
-            value: Minimum limit or ``None`` to reset to default.
+        Parameters
+        ----------
+        value : object
+            Minimum limit or ``None`` to reset to default.
         """
         if value is not None:
             self._x_min = value
@@ -263,16 +311,19 @@ def x_min(self, value):
             self._x_min = DEFAULT_MIN
 
     @property
-    def x_max(self):
+    def x_max(self) -> float:
         """Maximum x-axis limit."""
         return self._x_max
 
     @x_max.setter
-    def x_max(self, value):
-        """Set the maximum x-axis limit.
+    def x_max(self, value: object) -> None:
+        """
+        Set the maximum x-axis limit.
 
-        Args:
-            value: Maximum limit or ``None`` to reset to default.
+        Parameters
+        ----------
+        value : object
+            Maximum limit or ``None`` to reset to default.
         """
         if value is not None:
             self._x_max = value
@@ -280,16 +331,19 @@ def x_max(self, value):
             self._x_max = DEFAULT_MAX
 
     @property
-    def height(self):
+    def height(self) -> int:
         """Plot height (rows for ASCII, pixels for Plotly)."""
         return self._height
 
     @height.setter
-    def height(self, value):
-        """Set plot height.
+    def height(self, value: object) -> None:
+        """
+        Set plot height.
 
-        Args:
-            value: Height value or ``None`` to reset to default.
+        Parameters
+        ----------
+        value : object
+            Height value or ``None`` to reset to default.
         """
         if value is not None:
             self._height = value
@@ -300,7 +354,7 @@ def height(self, value):
     #  Public methods
     # ------------------------------------------------------------------
 
-    def show_config(self):
+    def show_config(self) -> None:
         """Display the current plotting configuration."""
         headers = [
             ('Parameter', 'left'),
@@ -317,25 +371,32 @@ def show_config(self):
 
     def plot_meas(
         self,
-        pattern,
-        expt_name,
-        expt_type,
-        x_min=None,
-        x_max=None,
-        x=None,
-    ):
-        """Plot measured pattern using the current engine.
-
-        Args:
-            pattern: Object with x-axis arrays (``two_theta``,
-                ``time_of_flight``, ``d_spacing``) and ``meas`` array.
-            expt_name: Experiment name for the title.
-            expt_type: Experiment type with scattering/beam enums.
-            x_min: Optional minimum x-axis limit.
-            x_max: Optional maximum x-axis limit.
-            x: X-axis type (``'two_theta'``, ``'time_of_flight'``, or
-                ``'d_spacing'``). If ``None``, auto-detected from
-                beam mode.
+        pattern: object,
+        expt_name: str,
+        expt_type: object,
+        x_min: object = None,
+        x_max: object = None,
+        x: object = None,
+    ) -> None:
+        """
+        Plot measured pattern using the current engine.
+
+        Parameters
+        ----------
+        pattern : object
+            Object with x-axis arrays (``two_theta``,
+            ``time_of_flight``, ``d_spacing``) and ``meas`` array.
+        expt_name : str
+            Experiment name for the title.
+        expt_type : object
+            Experiment type with scattering/beam enums.
+        x_min : object, default=None
+            Optional minimum x-axis limit.
+        x_max : object, default=None
+            Optional maximum x-axis limit.
+        x : object, default=None
+            X-axis type (``'two_theta'``, ``'time_of_flight'``, or
+            ``'d_spacing'``). If ``None``, auto-detected from beam mode.
         """
         ctx = self._prepare_powder_data(
             pattern,
@@ -360,25 +421,32 @@ def plot_meas(
 
     def plot_calc(
         self,
-        pattern,
-        expt_name,
-        expt_type,
-        x_min=None,
-        x_max=None,
-        x=None,
-    ):
-        """Plot calculated pattern using the current engine.
-
-        Args:
-            pattern: Object with x-axis arrays (``two_theta``,
-                ``time_of_flight``, ``d_spacing``) and ``calc`` array.
-            expt_name: Experiment name for the title.
-            expt_type: Experiment type with scattering/beam enums.
-            x_min: Optional minimum x-axis limit.
-            x_max: Optional maximum x-axis limit.
-            x: X-axis type (``'two_theta'``, ``'time_of_flight'``, or
-                ``'d_spacing'``). If ``None``, auto-detected from
-                beam mode.
+        pattern: object,
+        expt_name: str,
+        expt_type: object,
+        x_min: object = None,
+        x_max: object = None,
+        x: object = None,
+    ) -> None:
+        """
+        Plot calculated pattern using the current engine.
+
+        Parameters
+        ----------
+        pattern : object
+            Object with x-axis arrays (``two_theta``,
+            ``time_of_flight``, ``d_spacing``) and ``calc`` array.
+        expt_name : str
+            Experiment name for the title.
+        expt_type : object
+            Experiment type with scattering/beam enums.
+        x_min : object, default=None
+            Optional minimum x-axis limit.
+        x_max : object, default=None
+            Optional maximum x-axis limit.
+        x : object, default=None
+            X-axis type (``'two_theta'``, ``'time_of_flight'``, or
+            ``'d_spacing'``). If ``None``, auto-detected from beam mode.
         """
         ctx = self._prepare_powder_data(
             pattern,
@@ -403,37 +471,44 @@ def plot_calc(
 
     def plot_meas_vs_calc(
         self,
-        pattern,
-        expt_name,
-        expt_type,
-        x_min=None,
-        x_max=None,
-        show_residual=False,
-        x=None,
-    ):
-        """Plot measured and calculated series and optional residual.
+        pattern: object,
+        expt_name: str,
+        expt_type: object,
+        x_min: object = None,
+        x_max: object = None,
+        show_residual: bool = False,
+        x: object = None,
+    ) -> None:
+        """
+        Plot measured and calculated series and optional residual.
 
         Supports both powder and single crystal data with a unified API.
 
-        For powder diffraction:
-            - x='two_theta', 'time_of_flight', or 'd_spacing'
-            - Auto-detected from beam mode if not specified
-
-        For single crystal diffraction:
-            - x='intensity_calc' (default): scatter plot
-            - x='d_spacing' or 'sin_theta_over_lambda': line plot
-
-        Args:
-            pattern: Data pattern object with meas/calc arrays.
-            expt_name: Experiment name for the title.
-            expt_type: Experiment type with sample_form,
-                scattering, and beam enums.
-            x_min: Optional minimum x-axis limit.
-            x_max: Optional maximum x-axis limit.
-            show_residual: If ``True``, add residual series
-                (powder only).
-            x: X-axis type. If ``None``, auto-detected from sample form
-                and beam mode.
+        For powder diffraction: - x='two_theta', 'time_of_flight', or
+        'd_spacing' - Auto-detected from beam mode if not specified
+
+        For single crystal diffraction: - x='intensity_calc' (default):
+        scatter plot - x='d_spacing' or 'sin_theta_over_lambda': line
+        plot
+
+        Parameters
+        ----------
+        pattern : object
+            Data pattern object with meas/calc arrays.
+        expt_name : str
+            Experiment name for the title.
+        expt_type : object
+            Experiment type with sample_form, scattering, and beam
+            enums.
+        x_min : object, default=None
+            Optional minimum x-axis limit.
+        x_max : object, default=None
+            Optional maximum x-axis limit.
+        show_residual : bool, default=False
+            If ``True``, add residual series (powder only).
+        x : object, default=None
+            X-axis type. If ``None``, auto-detected from sample form and
+            beam mode.
         """
         x_axis, _, sample_form, scattering_type, _ = self._resolve_x_axis(expt_type, x)
 
diff --git a/src/easydiffraction/display/tablers/__init__.py b/src/easydiffraction/display/tablers/__init__.py
index 93d84417..6471fbff 100644
--- a/src/easydiffraction/display/tablers/__init__.py
+++ b/src/easydiffraction/display/tablers/__init__.py
@@ -1,10 +1,11 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2025 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
-"""Tabular rendering backends.
+"""
+Tabular rendering backends.
 
-This subpackage provides concrete implementations for rendering
-tables in different environments:
+This subpackage provides concrete implementations for rendering tables
+in different environments:
 
-- :mod:`.rich` for terminal and notebooks using the Rich library.
-- :mod:`.pandas` for notebooks using DataFrame Styler.
+- :mod:`.rich` for terminal and notebooks using the Rich library. -
+:mod:`.pandas` for notebooks using DataFrame Styler.
 """
diff --git a/src/easydiffraction/display/tablers/base.py b/src/easydiffraction/display/tablers/base.py
index 2b710d8f..869c5a17 100644
--- a/src/easydiffraction/display/tablers/base.py
+++ b/src/easydiffraction/display/tablers/base.py
@@ -1,6 +1,7 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2025 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
-"""Low-level backends for rendering tables.
+"""
+Low-level backends for rendering tables.
 
 This module defines the abstract base for tabular renderers and small
 helpers for consistent styling across terminal and notebook outputs.
@@ -10,7 +11,6 @@
 
 from abc import ABC
 from abc import abstractmethod
-from typing import Any
 
 from IPython import get_ipython
 from rich.color import Color
@@ -19,11 +19,11 @@
 
 
 class TableBackendBase(ABC):
-    """Abstract base class for concrete table backends.
+    """
+    Abstract base class for concrete table backends.
 
-    Subclasses implement the ``render`` method which receives an
-    index-aware pandas DataFrame and the alignment for each column
-    header.
+    Subclasses implement the ``render`` method which receives an index-
+    aware pandas DataFrame and the alignment for each column header.
     """
 
     FLOAT_PRECISION = 5
@@ -34,20 +34,26 @@ def __init__(self) -> None:
         super().__init__()
         self._float_fmt = f'{{:.{self.FLOAT_PRECISION}f}}'.format
 
-    def _format_value(self, value: Any) -> Any:
-        """Format floats with fixed precision and others as strings.
+    def _format_value(self, value: object) -> object:
+        """
+        Format floats with fixed precision and others as strings.
 
-        Args:
-            value: Cell value to format.
+        Parameters
+        ----------
+        value : object
+            Cell value to format.
 
-        Returns:
+        Returns
+        -------
+        object
             A string representation with fixed precision for floats or
             ``str(value)`` for other types.
         """
         return self._float_fmt(value) if isinstance(value, float) else str(value)
 
     def _is_dark_theme(self) -> bool:
-        """Return True when a dark theme is detected in Jupyter.
+        """
+        Return True when a dark theme is detected in Jupyter.
 
         If not running inside Jupyter, return a sane default (True).
         """
@@ -62,14 +68,18 @@ def _is_dark_theme(self) -> bool:
 
         return is_dark()
 
-    def _rich_to_hex(self, color):
-        """Convert a Rich color name to a CSS-style hex string.
+    def _rich_to_hex(self, color: str) -> str:
+        """
+        Convert a Rich color name to a CSS-style hex string.
 
-        Args:
-            color: Rich color name or specification parsable by
-                :mod:`rich`.
+        Parameters
+        ----------
+        color : str
+            Rich color name or specification parsable by :mod:`rich`.
 
-        Returns:
+        Returns
+        -------
+        str
             Hex color string in the form ``#RRGGBB``.
         """
         c = Color.parse(color)
@@ -90,21 +100,27 @@ def _pandas_border_color(self) -> str:
     @abstractmethod
     def render(
         self,
-        alignments,
-        df,
-        display_handle: Any | None = None,
-    ) -> Any:
-        """Render the provided DataFrame with backend-specific styling.
-
-        Args:
-            alignments: Iterable of column justifications (e.g.,
-                ``'left'`` or ``'center'``) corresponding to the data
-                columns.
-            df: Index-aware DataFrame with data to render.
-            display_handle: Optional environment-specific handle to
-                enable in-place updates.
-
-        Returns:
+        alignments: object,
+        df: object,
+        display_handle: object | None = None,
+    ) -> object:
+        """
+        Render the provided DataFrame with backend-specific styling.
+
+        Parameters
+        ----------
+        alignments : object
+            Iterable of column justifications (e.g., ``'left'`` or
+            ``'center'``) corresponding to the data columns.
+        df : object
+            Index-aware DataFrame with data to render.
+        display_handle : object | None, default=None
+            Optional environment-specific handle to enable in-place
+            updates.
+
+        Returns
+        -------
+        object
             Backend-defined return value (commonly ``None``).
         """
         pass
diff --git a/src/easydiffraction/display/tablers/pandas.py b/src/easydiffraction/display/tablers/pandas.py
index da05b5e8..4efef148 100644
--- a/src/easydiffraction/display/tablers/pandas.py
+++ b/src/easydiffraction/display/tablers/pandas.py
@@ -1,11 +1,9 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2025 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 """Pandas-based table renderer for notebooks using DataFrame Styler."""
 
 from __future__ import annotations
 
-from typing import Any
-
 try:
     from IPython.display import HTML
     from IPython.display import display
@@ -22,13 +20,18 @@ class PandasTableBackend(TableBackendBase):
     """Render tables using the pandas Styler in Jupyter environments."""
 
     def _build_base_styles(self, color: str) -> list[dict]:
-        """Return base CSS table styles for a given border color.
+        """
+        Return base CSS table styles for a given border color.
 
-        Args:
-            color: CSS color value (e.g., ``#RRGGBB``) to use for
-                borders and header accents.
+        Parameters
+        ----------
+        color : str
+            CSS color value (e.g., ``#RRGGBB``) to use for borders and
+            header accents.
 
-        Returns:
+        Returns
+        -------
+        list[dict]
             A list of ``Styler.set_table_styles`` dictionaries.
         """
         return [
@@ -76,15 +79,21 @@ def _build_base_styles(self, color: str) -> list[dict]:
             },
         ]
 
-    def _build_header_alignment_styles(self, df, alignments) -> list[dict]:
-        """Generate header cell alignment styles per column.
-
-        Args:
-            df: DataFrame whose columns are being rendered.
-            alignments: Iterable of text alignment values (e.g.,
-                ``'left'``, ``'center'``) matching ``df`` columns.
-
-        Returns:
+    def _build_header_alignment_styles(self, df: object, alignments: object) -> list[dict]:
+        """
+        Generate header cell alignment styles per column.
+
+        Parameters
+        ----------
+        df : object
+            DataFrame whose columns are being rendered.
+        alignments : object
+            Iterable of text alignment values (e.g., ``'left'``,
+            ``'center'``) matching ``df`` columns.
+
+        Returns
+        -------
+        list[dict]
             A list of CSS rules for header cell alignment.
         """
         return [
@@ -95,15 +104,22 @@ def _build_header_alignment_styles(self, df, alignments) -> list[dict]:
             for column, align in zip(df.columns, alignments, strict=False)
         ]
 
-    def _apply_styling(self, df, alignments, color: str):
-        """Build a configured Styler with alignments and base styles.
-
-        Args:
-            df: DataFrame to style.
-            alignments: Iterable of text alignment values for columns.
-            color: CSS color value used for borders/header.
-
-        Returns:
+    def _apply_styling(self, df: object, alignments: object, color: str) -> object:
+        """
+        Build a configured Styler with alignments and base styles.
+
+        Parameters
+        ----------
+        df : object
+            DataFrame to style.
+        alignments : object
+            Iterable of text alignment values for columns.
+        color : str
+            CSS color value used for borders/header.
+
+        Returns
+        -------
+        object
             A configured pandas Styler ready for display.
         """
         table_styles = self._build_base_styles(color)
@@ -120,17 +136,20 @@ def _apply_styling(self, df, alignments, color: str):
             )
         return styler
 
-    def _update_display(self, styler, display_handle) -> None:
-        """Single, consistent update path for Jupyter.
+    def _update_display(self, styler: object, display_handle: object) -> None:
+        """
+        Single, consistent update path for Jupyter.
 
         If a handle with ``update()`` is provided and it's a
         DisplayHandle, update the output area in-place using HTML.
         Otherwise, display once via IPython ``display()``.
 
-        Args:
-            styler: Configured DataFrame Styler to be rendered.
-            display_handle: Optional IPython DisplayHandle used for
-                in-place updates.
+        Parameters
+        ----------
+        styler : object
+            Configured DataFrame Styler to be rendered.
+        display_handle : object
+            Optional IPython DisplayHandle used for in-place updates.
         """
         # Handle with update() method
         if display_handle is not None and hasattr(display_handle, 'update'):
@@ -152,17 +171,27 @@ def _update_display(self, styler, display_handle) -> None:
 
     def render(
         self,
-        alignments,
-        df,
-        display_handle: Any | None = None,
-    ) -> Any:
-        """Render a styled DataFrame.
-
-        Args:
-            alignments: Iterable of column justifications (e.g. 'left').
-            df: DataFrame whose index is displayed as the first column.
-            display_handle: Optional IPython DisplayHandle to update an
-                existing output area in place when running in Jupyter.
+        alignments: object,
+        df: object,
+        display_handle: object | None = None,
+    ) -> object:
+        """
+        Render a styled DataFrame.
+
+        Parameters
+        ----------
+        alignments : object
+            Iterable of column justifications (e.g. 'left').
+        df : object
+            DataFrame whose index is displayed as the first column.
+        display_handle : object | None, default=None
+            Optional IPython DisplayHandle to update an existing output
+            area in place when running in Jupyter.
+
+        Returns
+        -------
+        object
+            Backend-defined return value (commonly ``None``).
         """
         color = self._pandas_border_color
         styler = self._apply_styling(df, alignments, color)
diff --git a/src/easydiffraction/display/tablers/rich.py b/src/easydiffraction/display/tablers/rich.py
index e7a8afbb..fba2a400 100644
--- a/src/easydiffraction/display/tablers/rich.py
+++ b/src/easydiffraction/display/tablers/rich.py
@@ -1,11 +1,10 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2025 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 """Rich-based table renderer for terminals and notebooks."""
 
 from __future__ import annotations
 
 import io
-from typing import Any
 
 from rich.box import Box
 from rich.console import Console
@@ -41,16 +40,20 @@ class RichTableBackend(TableBackendBase):
     """Render tables to terminal or Jupyter using the Rich library."""
 
     def _to_html(self, table: Table) -> str:
-        """Render a Rich table to HTML using an off-screen console.
+        """
+        Render a Rich table to HTML using an off-screen console.
 
-        A fresh ``Console(record=True, file=StringIO())`` avoids
-        private attribute access and guarantees no visible output
-        in notebooks.
+        A fresh ``Console(record=True, file=StringIO())`` avoids private
+        attribute access and guarantees no visible output in notebooks.
 
-        Args:
-            table: Rich :class:`~rich.table.Table` to export.
+        Parameters
+        ----------
+        table : Table
+            Rich :class:`~rich.table.Table` to export.
 
-        Returns:
+        Returns
+        -------
+        str
             HTML string with inline styles for notebook display.
         """
         tmp = Console(force_jupyter=False, record=True, file=io.StringIO())
@@ -63,15 +66,22 @@ def _to_html(self, table: Table) -> str:
         )
         return html
 
-    def _build_table(self, df, alignments, color: str) -> Table:
-        """Construct a Rich Table with formatted data and alignment.
-
-        Args:
-            df: DataFrame-like object providing rows to render.
-            alignments: Iterable of text alignment values for columns.
-            color: Rich color name used for borders/index style.
-
-        Returns:
+    def _build_table(self, df: object, alignments: object, color: str) -> Table:
+        """
+        Construct a Rich Table with formatted data and alignment.
+
+        Parameters
+        ----------
+        df : object
+            DataFrame-like object providing rows to render.
+        alignments : object
+            Iterable of text alignment values for columns.
+        color : str
+            Rich color name used for borders/index style.
+
+        Returns
+        -------
+        Table
             A :class:`~rich.table.Table` configured for display.
         """
         table = Table(
@@ -96,20 +106,23 @@ def _build_table(self, df, alignments, color: str) -> Table:
 
         return table
 
-    def _update_display(self, table: Table, display_handle) -> None:
-        """Single, consistent update path for Jupyter and terminal.
-
-        - With a handle that has ``update()``:
-          * If it's an IPython DisplayHandle, export to HTML and
-            update.
-          * Otherwise, treat it as a terminal/live-like handle and
-            update with the Rich renderable.
-        - Without a handle, print once to the shared console.
-
-        Args:
-            table: Rich :class:`~rich.table.Table` to display.
-            display_handle: Optional environment-specific handle for
-                in-place updates (IPython or terminal live).
+    def _update_display(self, table: Table, display_handle: object) -> None:
+        """
+        Single, consistent update path for Jupyter and terminal.
+
+        - With a handle that has ``update()``: * If it's an IPython
+        DisplayHandle, export to HTML and update. * Otherwise, treat it
+        as a terminal/live-like handle and update with the Rich
+        renderable. - Without a handle, print once to the shared
+        console.
+
+        Parameters
+        ----------
+        table : Table
+            Rich :class:`~rich.table.Table` to display.
+        display_handle : object
+            Optional environment-specific handle for in- place updates
+            (IPython or terminal live).
         """
         # Handle with update() method
         if display_handle is not None and hasattr(display_handle, 'update'):
@@ -136,17 +149,26 @@ def _update_display(self, table: Table, display_handle) -> None:
 
     def render(
         self,
-        alignments,
-        df,
-        display_handle=None,
-    ) -> Any:
-        """Render a styled table using Rich.
-
-        Args:
-            alignments: Iterable of text-align values for columns.
-            df: Index-aware DataFrame to render.
-            display_handle: Optional environment handle for in-place
-                updates.
+        alignments: object,
+        df: object,
+        display_handle: object = None,
+    ) -> object:
+        """
+        Render a styled table using Rich.
+
+        Parameters
+        ----------
+        alignments : object
+            Iterable of text-align values for columns.
+        df : object
+            Index-aware DataFrame to render.
+        display_handle : object, default=None
+            Optional environment handle for in-place updates.
+
+        Returns
+        -------
+        object
+            Backend-defined return value (commonly ``None``).
         """
         color = self._rich_border_color
         table = self._build_table(df, alignments, color)
diff --git a/src/easydiffraction/display/tables.py b/src/easydiffraction/display/tables.py
index e149609d..1ae39594 100644
--- a/src/easydiffraction/display/tables.py
+++ b/src/easydiffraction/display/tables.py
@@ -1,11 +1,10 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2025 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 """Table rendering engines: console (Rich) and Jupyter (pandas)."""
 
 from __future__ import annotations
 
 from enum import Enum
-from typing import Any
 
 import pandas as pd
 
@@ -19,12 +18,15 @@
 
 
 class TableEngineEnum(str, Enum):
+    """Available table rendering backends."""
+
     RICH = 'rich'
     PANDAS = 'pandas'
 
     @classmethod
     def default(cls) -> 'TableEngineEnum':
-        """Select default engine based on environment.
+        """
+        Select default engine based on environment.
 
         Returns Pandas when running in Jupyter, otherwise Rich.
         """
@@ -35,6 +37,14 @@ def default(cls) -> 'TableEngineEnum':
         return cls.RICH
 
     def description(self) -> str:
+        """
+        Return a human-readable description of this table engine.
+
+        Returns
+        -------
+        str
+            Description string for the current enum member.
+        """
         if self is TableEngineEnum.RICH:
             return 'Console rendering with Rich'
         elif self is TableEngineEnum.PANDAS:
@@ -65,17 +75,23 @@ def show_config(self) -> None:
         console.paragraph('Current tabler configuration')
         TableRenderer.get().render(df)
 
-    def render(self, df, display_handle: Any | None = None) -> Any:
-        """Render a DataFrame as a table using the active backend.
-
-        Args:
-            df: DataFrame with a two-level column index where the
-                second level provides per-column alignment.
-            display_handle: Optional environment-specific handle used
-                to update an existing output area in-place (e.g., an
-                IPython DisplayHandle or a terminal live handle).
-
-        Returns:
+    def render(self, df: object, display_handle: object | None = None) -> object:
+        """
+        Render a DataFrame as a table using the active backend.
+
+        Parameters
+        ----------
+        df : object
+            DataFrame with a two-level column index where the second
+            level provides per-column alignment.
+        display_handle : object | None, default=None
+            Optional environment-specific handle used to update an
+            existing output area in-place (e.g., an IPython
+            DisplayHandle or a terminal live handle).
+
+        Returns
+        -------
+        object
             Backend-specific return value (usually ``None``).
         """
         # Work on a copy to avoid mutating the original DataFrame
@@ -98,11 +114,11 @@ class TableRendererFactory(RendererFactoryBase):
 
     @classmethod
     def _registry(cls) -> dict:
-        """Build registry, adapting available engines to the
-        environment.
+        """
+        Build registry, adapting available engines to the environment.
 
-        - In Jupyter: expose both 'rich' and 'pandas'.
-        - In terminal: expose only 'rich' (pandas is notebook-only).
+        - In Jupyter: expose both 'rich' and 'pandas'. - In terminal:
+        expose only 'rich' (pandas is notebook-only).
         """
         base = {
             TableEngineEnum.RICH.value: {
diff --git a/src/easydiffraction/display/utils.py b/src/easydiffraction/display/utils.py
index 8c06f384..17c6fa94 100644
--- a/src/easydiffraction/display/utils.py
+++ b/src/easydiffraction/display/utils.py
@@ -1,4 +1,4 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2025 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 
 from __future__ import annotations
@@ -18,9 +18,7 @@
 
 
 class JupyterScrollManager:
-    """Ensures that Jupyter output cells are not scrollable (applied
-    once).
-    """
+    """Ensures Jupyter output cells are not scrollable (once)."""
 
     _applied: ClassVar[bool] = False
 
diff --git a/src/easydiffraction/io/__init__.py b/src/easydiffraction/io/__init__.py
index 429f2648..4e798e20 100644
--- a/src/easydiffraction/io/__init__.py
+++ b/src/easydiffraction/io/__init__.py
@@ -1,2 +1,2 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
diff --git a/src/easydiffraction/io/cif/__init__.py b/src/easydiffraction/io/cif/__init__.py
index 429f2648..4e798e20 100644
--- a/src/easydiffraction/io/cif/__init__.py
+++ b/src/easydiffraction/io/cif/__init__.py
@@ -1,2 +1,2 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
diff --git a/src/easydiffraction/io/cif/handler.py b/src/easydiffraction/io/cif/handler.py
index 16ed4343..0cd3b62b 100644
--- a/src/easydiffraction/io/cif/handler.py
+++ b/src/easydiffraction/io/cif/handler.py
@@ -1,4 +1,4 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2025 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 """Minimal CIF tag handler used by descriptors/parameters."""
 
@@ -6,7 +6,8 @@
 
 
 class CifHandler:
-    """Canonical CIF handler used by descriptors/parameters.
+    """
+    Canonical CIF handler used by descriptors/parameters.
 
     Holds CIF tags (names) and attaches to an owning descriptor so it
     can derive a stable uid if needed.
@@ -16,7 +17,7 @@ def __init__(self, *, names: list[str]) -> None:
         self._names = names
         self._owner = None  # set by attach
 
-    def attach(self, owner):
+    def attach(self, owner: object) -> None:
         """Attach to a descriptor or parameter instance."""
         self._owner = owner
 
diff --git a/src/easydiffraction/io/cif/parse.py b/src/easydiffraction/io/cif/parse.py
index ad0d736d..a320cf60 100644
--- a/src/easydiffraction/io/cif/parse.py
+++ b/src/easydiffraction/io/cif/parse.py
@@ -1,4 +1,4 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2025 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 
 import gemmi
diff --git a/src/easydiffraction/io/cif/serialize.py b/src/easydiffraction/io/cif/serialize.py
index 971b08c4..f885aed7 100644
--- a/src/easydiffraction/io/cif/serialize.py
+++ b/src/easydiffraction/io/cif/serialize.py
@@ -1,4 +1,4 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2025 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 
 from __future__ import annotations
@@ -22,14 +22,13 @@
     from easydiffraction.core.variable import GenericDescriptorBase
 
 
-def format_value(value) -> str:
-    """Format a single CIF value, quoting strings with whitespace, and
-    format floats with global precision.
+def format_value(value: object) -> str:
+    """
+    Format a single CIF value for output.
 
-    .. note::
-        The precision must be high enough so that the minimizer's
-        finite-difference Jacobian probes (typically ~1e-8 relative)
-        survive the float→string→float round-trip through CIF.
+    .. note::     The precision must be high enough so that the
+    minimizer's     finite-difference Jacobian probes (typically ~1e-8
+    relative)     survive the float→string→float round-trip through CIF.
     """
     width = 12
     precision = 8
@@ -61,8 +60,9 @@ def format_value(value) -> str:
 ##################
 
 
-def param_to_cif(param) -> str:
-    """Render a single descriptor/parameter to a CIF line.
+def param_to_cif(param: object) -> str:
+    """
+    Render a single descriptor/parameter to a CIF line.
 
     Expects ``param`` to expose ``_cif_handler.names`` and ``value``.
     """
@@ -71,8 +71,9 @@ def param_to_cif(param) -> str:
     return f'{main_key} {format_value(param.value)}'
 
 
-def category_item_to_cif(item) -> str:
-    """Render a CategoryItem-like object to CIF text.
+def category_item_to_cif(item: object) -> str:
+    """
+    Render a CategoryItem-like object to CIF text.
 
     Expects ``item.parameters`` iterable of params with
     ``_cif_handler.names`` and ``value``.
@@ -84,10 +85,11 @@ def category_item_to_cif(item) -> str:
 
 
 def category_collection_to_cif(
-    collection,
+    collection: object,
     max_display: Optional[int] = 20,
 ) -> str:
-    """Render a CategoryCollection-like object to CIF text.
+    """
+    Render a CategoryCollection-like object to CIF text.
 
     Uses first item to build loop header, then emits rows for each item.
     """
@@ -125,8 +127,9 @@ def category_collection_to_cif(
     return '\n'.join(lines)
 
 
-def datablock_item_to_cif(datablock) -> str:
-    """Render a DatablockItem-like object to CIF text.
+def datablock_item_to_cif(datablock: object) -> str:
+    """
+    Render a DatablockItem-like object to CIF text.
 
     Emits a data_ header and then concatenates category CIF sections.
     """
@@ -150,15 +153,13 @@ def datablock_item_to_cif(datablock) -> str:
     return '\n\n'.join(parts)
 
 
-def datablock_collection_to_cif(collection) -> str:
+def datablock_collection_to_cif(collection: object) -> str:
     """Render a collection of datablocks by joining their CIF blocks."""
     return '\n\n'.join([block.as_cif for block in collection.values()])
 
 
-def project_info_to_cif(info) -> str:
-    """Render ProjectInfo to CIF text (id, title, description,
-    dates).
-    """
+def project_info_to_cif(info: object) -> str:
+    """Render ProjectInfo to CIF text (id, title, description)."""
     name = f'{info.name}'
 
     title = f'{info.title}'
@@ -184,7 +185,7 @@ def project_info_to_cif(info) -> str:
     )
 
 
-def project_to_cif(project) -> str:
+def project_to_cif(project: object) -> str:
     """Render a whole project by concatenating sections when present."""
     parts: list[str] = []
     if hasattr(project, 'info'):
@@ -200,12 +201,12 @@ def project_to_cif(project) -> str:
     return '\n\n'.join([p for p in parts if p])
 
 
-def experiment_to_cif(experiment) -> str:
+def experiment_to_cif(experiment: object) -> str:
     """Render an experiment: datablock part plus measured data."""
     return datablock_item_to_cif(experiment)
 
 
-def analysis_to_cif(analysis) -> str:
+def analysis_to_cif(analysis: object) -> str:
     """Render analysis metadata, aliases, and constraints to CIF."""
     cur_min = format_value(analysis.current_minimizer)
     lines: list[str] = []
@@ -222,7 +223,7 @@ def analysis_to_cif(analysis) -> str:
     return '\n'.join(lines)
 
 
-def summary_to_cif(_summary) -> str:
+def summary_to_cif(_summary: object) -> str:
     """Render a summary CIF block (placeholder for now)."""
     return 'To be added...'
 
@@ -239,6 +240,18 @@ def param_from_cif(
     block: gemmi.cif.Block,
     idx: int = 0,
 ) -> None:
+    """
+    Populate a single descriptor from a CIF block.
+
+    Parameters
+    ----------
+    self : GenericDescriptorBase
+        The descriptor instance to populate.
+    block : gemmi.cif.Block
+        Parsed CIF block to read values from.
+    idx : int, default=0
+        Row index used when the tag belongs to a loop.
+    """
     found_values: list[Any] = []
 
     # Try to find the value(s) from the CIF block iterating over
@@ -290,6 +303,21 @@ def category_collection_from_cif(
     self: CategoryCollection,
     block: gemmi.cif.Block,
 ) -> None:
+    """
+    Populate a CategoryCollection from a CIF loop.
+
+    Parameters
+    ----------
+    self : CategoryCollection
+        The collection instance to populate.
+    block : gemmi.cif.Block
+        Parsed CIF block to read the loop from.
+
+    Raises
+    ------
+    ValueError
+        If the collection has no ``_item_type`` defined.
+    """
     # TODO: Find a better way and then remove TODO in the AtomSite
     #  class
     # TODO: Rename to _item_cls?
@@ -302,7 +330,7 @@ def category_collection_from_cif(
 
     # Iterate over category parameters and their possible CIF names
     # trying to find the whole loop it belongs to inside the CIF block
-    def _get_loop(block, category_item):
+    def _get_loop(block: object, category_item: object) -> object | None:
         for param in category_item.parameters:
             for name in param._cif_handler.names:
                 loop = block.find_loop(name).get_loop()
diff --git a/src/easydiffraction/project/__init__.py b/src/easydiffraction/project/__init__.py
index 429f2648..4e798e20 100644
--- a/src/easydiffraction/project/__init__.py
+++ b/src/easydiffraction/project/__init__.py
@@ -1,2 +1,2 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
diff --git a/src/easydiffraction/project/project.py b/src/easydiffraction/project/project.py
index f7a3f487..af5a5922 100644
--- a/src/easydiffraction/project/project.py
+++ b/src/easydiffraction/project/project.py
@@ -1,4 +1,4 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 """Project facade to orchestrate models, experiments, and analysis."""
 
@@ -22,7 +22,8 @@
 
 
 class Project(GuardedBase):
-    """Central API for managing a diffraction data analysis project.
+    """
+    Central API for managing a diffraction data analysis project.
 
     Provides access to structures, experiments, analysis, and summary.
     """
@@ -74,13 +75,19 @@ def info(self) -> ProjectInfo:
 
     @property
     def name(self) -> str:
-        """Convenience property to access the project's name
-        directly.
-        """
+        """Convenience property for the project name."""
         return self._info.name
 
     @property
     def full_name(self) -> str:
+        """
+        Return the full project name (alias for :attr:`name`).
+
+        Returns
+        -------
+        str
+            The project name.
+        """
         return self.name
 
     @property
@@ -94,42 +101,42 @@ def structures(self, structures: Structures) -> None:
         self._structures = structures
 
     @property
-    def experiments(self):
+    def experiments(self) -> Experiments:
         """Collection of experiments in the project."""
         return self._experiments
 
     @experiments.setter
     @typechecked
-    def experiments(self, experiments: Experiments):
+    def experiments(self, experiments: Experiments) -> None:
         self._experiments = experiments
 
     @property
-    def plotter(self):
+    def plotter(self) -> Plotter:
         """Plotting facade bound to the project."""
         return self._plotter
 
     @property
-    def tabler(self):
+    def tabler(self) -> TableRenderer:
         """Tables rendering facade bound to the project."""
         return self._tabler
 
     @property
-    def analysis(self):
+    def analysis(self) -> Analysis:
         """Analysis entry-point bound to the project."""
         return self._analysis
 
     @property
-    def summary(self):
+    def summary(self) -> Summary:
         """Summary report builder bound to the project."""
         return self._summary
 
     @property
-    def parameters(self):
+    def parameters(self) -> list:
         """Return parameters from all structures and experiments."""
         return self.structures.parameters + self.experiments.parameters
 
     @property
-    def as_cif(self):
+    def as_cif(self) -> str:
         """Export whole project as CIF text."""
         # Concatenate sections using centralized CIF serializers
         return project_to_cif(self)
@@ -139,7 +146,8 @@ def as_cif(self):
     # ------------------------------------------
 
     def load(self, dir_path: str) -> None:
-        """Load a project from a given directory.
+        """
+        Load a project from a given directory.
 
         Loads project info, structures, experiments, etc.
         """
@@ -216,7 +224,7 @@ def save_as(
     # Plotting
     # ------------------------------------------
 
-    def _update_categories(self, expt_name) -> None:
+    def _update_categories(self, expt_name: str) -> None:
         for structure in self.structures:
             structure._update_categories()
         self.analysis._update_categories()
@@ -225,11 +233,25 @@ def _update_categories(self, expt_name) -> None:
 
     def plot_meas(
         self,
-        expt_name,
-        x_min=None,
-        x_max=None,
-        x=None,
-    ):
+        expt_name: str,
+        x_min: float | None = None,
+        x_max: float | None = None,
+        x: object | None = None,
+    ) -> None:
+        """
+        Plot measured diffraction data for an experiment.
+
+        Parameters
+        ----------
+        expt_name : str
+            Name of the experiment to plot.
+        x_min : float | None, default=None
+            Lower bound for the x-axis range.
+        x_max : float | None, default=None
+            Upper bound for the x-axis range.
+        x : object | None, default=None
+            Optional explicit x-axis data to override stored values.
+        """
         self._update_categories(expt_name)
         experiment = self.experiments[expt_name]
 
@@ -244,11 +266,25 @@ def plot_meas(
 
     def plot_calc(
         self,
-        expt_name,
-        x_min=None,
-        x_max=None,
-        x=None,
-    ):
+        expt_name: str,
+        x_min: float | None = None,
+        x_max: float | None = None,
+        x: object | None = None,
+    ) -> None:
+        """
+        Plot calculated diffraction pattern for an experiment.
+
+        Parameters
+        ----------
+        expt_name : str
+            Name of the experiment to plot.
+        x_min : float | None, default=None
+            Lower bound for the x-axis range.
+        x_max : float | None, default=None
+            Upper bound for the x-axis range.
+        x : object | None, default=None
+            Optional explicit x-axis data to override stored values.
+        """
         self._update_categories(expt_name)
         experiment = self.experiments[expt_name]
 
@@ -263,12 +299,28 @@ def plot_calc(
 
     def plot_meas_vs_calc(
         self,
-        expt_name,
-        x_min=None,
-        x_max=None,
-        show_residual=False,
-        x=None,
-    ):
+        expt_name: str,
+        x_min: float | None = None,
+        x_max: float | None = None,
+        show_residual: bool = False,
+        x: object | None = None,
+    ) -> None:
+        """
+        Plot measured vs calculated data for an experiment.
+
+        Parameters
+        ----------
+        expt_name : str
+            Name of the experiment to plot.
+        x_min : float | None, default=None
+            Lower bound for the x-axis range.
+        x_max : float | None, default=None
+            Upper bound for the x-axis range.
+        show_residual : bool, default=False
+            When ``True``, include the residual (difference) curve.
+        x : object | None, default=None
+            Optional explicit x-axis data to override stored values.
+        """
         self._update_categories(expt_name)
         experiment = self.experiments[expt_name]
 
diff --git a/src/easydiffraction/project/project_info.py b/src/easydiffraction/project/project_info.py
index 998ba200..d062d522 100644
--- a/src/easydiffraction/project/project_info.py
+++ b/src/easydiffraction/project/project_info.py
@@ -1,4 +1,4 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2025 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 """Project metadata container used by Project."""
 
@@ -12,9 +12,7 @@
 
 
 class ProjectInfo(GuardedBase):
-    """Stores metadata about the project, such as name, title,
-    description, and file paths.
-    """
+    """Store project metadata: name, title, description, paths."""
 
     def __init__(
         self,
@@ -38,6 +36,14 @@ def name(self) -> str:
 
     @name.setter
     def name(self, value: str) -> None:
+        """
+        Set the project name.
+
+        Parameters
+        ----------
+        value : str
+            New project name.
+        """
         self._name = value
 
     @property
@@ -52,6 +58,14 @@ def title(self) -> str:
 
     @title.setter
     def title(self, value: str) -> None:
+        """
+        Set the project title.
+
+        Parameters
+        ----------
+        value : str
+            New project title.
+        """
         self._title = value
 
     @property
@@ -61,6 +75,14 @@ def description(self) -> str:
 
     @description.setter
     def description(self, value: str) -> None:
+        """
+        Set the project description (whitespace normalized).
+
+        Parameters
+        ----------
+        value : str
+            New description text.
+        """
         self._description = ' '.join(value.split())
 
     @property
@@ -69,7 +91,15 @@ def path(self) -> pathlib.Path:
         return self._path
 
     @path.setter
-    def path(self, value) -> None:
+    def path(self, value: object) -> None:
+        """
+        Set the project directory path.
+
+        Parameters
+        ----------
+        value : object
+            New path as a :class:`str` or :class:`pathlib.Path`.
+        """
         # Accept str or Path; normalize to Path
         self._path = pathlib.Path(value)
 
@@ -87,8 +117,8 @@ def update_last_modified(self) -> None:
         """Update the last modified timestamp."""
         self._last_modified = datetime.datetime.now()
 
-    def parameters(self):
-        """Placeholder for parameter listing."""
+    def parameters(self) -> None:
+        """List parameters (not implemented)."""
         pass
 
     # TODO: Consider moving to io.cif.serialize
diff --git a/src/easydiffraction/summary/__init__.py b/src/easydiffraction/summary/__init__.py
index 429f2648..4e798e20 100644
--- a/src/easydiffraction/summary/__init__.py
+++ b/src/easydiffraction/summary/__init__.py
@@ -1,2 +1,2 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
diff --git a/src/easydiffraction/summary/summary.py b/src/easydiffraction/summary/summary.py
index 7e72d825..9d715bac 100644
--- a/src/easydiffraction/summary/summary.py
+++ b/src/easydiffraction/summary/summary.py
@@ -1,4 +1,4 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 
 from textwrap import wrap
@@ -9,17 +9,21 @@
 
 
 class Summary:
-    """Generates reports and exports results from the project.
+    """
+    Generates reports and exports results from the project.
 
     This class collects and presents all relevant information about the
     fitted model, experiments, and analysis results.
     """
 
-    def __init__(self, project) -> None:
-        """Initialize the summary with a reference to the project.
+    def __init__(self, project: object) -> None:
+        """
+        Initialize the summary with a reference to the project.
 
-        Args:
-            project: The Project instance this summary belongs to.
+        Parameters
+        ----------
+        project : object
+            The Project instance this summary belongs to.
         """
         self.project = project
 
@@ -28,6 +32,7 @@ def __init__(self, project) -> None:
     # ------------------------------------------
 
     def show_report(self) -> None:
+        """Print a full project report covering all sections."""
         self.show_project_info()
         self.show_crystallographic_data()
         self.show_experimental_data()
@@ -52,9 +57,7 @@ def show_project_info(self) -> None:
             print('\n'.join(desc_lines))
 
     def show_crystallographic_data(self) -> None:
-        """Print crystallographic data including phase datablocks, space
-        groups, cell parameters, and atom sites.
-        """
+        """Print crystallographic data for all phases."""
         console.section('Crystallographic data')
 
         for model in self.project.structures.values():
@@ -114,9 +117,7 @@ def show_crystallographic_data(self) -> None:
             )
 
     def show_experimental_data(self) -> None:
-        """Print experimental data including experiment datablocks,
-        types, instrument settings, and peak profile information.
-        """
+        """Print experimental data for all experiments."""
         console.section('Experiments')
 
         for expt in self.project.experiments.values():
@@ -174,9 +175,7 @@ def show_experimental_data(self) -> None:
                     )
 
     def show_fitting_details(self) -> None:
-        """Print fitting details including calculation and minimization
-        engines, and fit quality metrics.
-        """
+        """Print fitting details including engines and metrics."""
         console.section('Fitting')
 
         console.paragraph('Calculation engine')
@@ -206,9 +205,7 @@ def show_fitting_details(self) -> None:
     # ------------------------------------------
 
     def as_cif(self) -> str:
-        """Export the final fitted data and analysis results as CIF
-        format.
-        """
+        """Export fitted data and analysis results as CIF."""
         from easydiffraction.io.cif.serialize import summary_to_cif
 
         return summary_to_cif(self)
diff --git a/src/easydiffraction/utils/__init__.py b/src/easydiffraction/utils/__init__.py
index d193bf2f..53fde2c6 100644
--- a/src/easydiffraction/utils/__init__.py
+++ b/src/easydiffraction/utils/__init__.py
@@ -1,4 +1,4 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2025 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 
 from easydiffraction.utils.utils import _is_dev_version
diff --git a/src/easydiffraction/utils/_vendored/__init__.py b/src/easydiffraction/utils/_vendored/__init__.py
index 20506363..c124e1af 100644
--- a/src/easydiffraction/utils/_vendored/__init__.py
+++ b/src/easydiffraction/utils/_vendored/__init__.py
@@ -1,23 +1,22 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
-"""Vendored third-party modules.
+"""
+Vendored third-party modules.
 
 This package contains third-party code that has been vendored into the
 project to avoid external dependencies not available on conda-forge.
 
-Packages:
-    jupyter_dark_detect/
-        Vendored copy of jupyter_dark_detect (MIT License).
-        Check jupyter_dark_detect.__version__ for vendored version.
+Packages:     jupyter_dark_detect/         Vendored copy of
+jupyter_dark_detect (MIT License).         Check
+jupyter_dark_detect.__version__ for vendored version.
 
-        To update, replace these files from upstream:
-        - https://github.com/OpenMined/jupyter-dark-detect/blob/main/jupyter_dark_detect/__init__.py
-        - https://github.com/OpenMined/jupyter-dark-detect/blob/main/jupyter_dark_detect/detector.py
+To update, replace these files from upstream: -
+https://github.com/OpenMined/jupyter-dark-detect/blob/main/jupyter_dark_detect/__init__.py
+-
+https://github.com/OpenMined/jupyter-dark-detect/blob/main/jupyter_dark_detect/detector.py
 
-        Then run 'pixi run fix' to format and check for issues.
+Then run 'pixi run fix' to format and check for issues.
 
-Modules:
-    theme_detect:
-        Custom wrapper around jupyter_dark_detect with optimized
-        detection order for EasyDiffraction's use case.
+Modules: theme_detect: Custom wrapper around jupyter_dark_detect with
+optimized detection order for EasyDiffraction's use case.
 """
diff --git a/src/easydiffraction/utils/_vendored/jupyter_dark_detect/__init__.py b/src/easydiffraction/utils/_vendored/jupyter_dark_detect/__init__.py
index 11ef7b95..640883dd 100644
--- a/src/easydiffraction/utils/_vendored/jupyter_dark_detect/__init__.py
+++ b/src/easydiffraction/utils/_vendored/jupyter_dark_detect/__init__.py
@@ -1,7 +1,7 @@
-"""jupyter-dark-detect: Detect dark mode in Jupyter environments.
+"""Jupyter-dark-detect: Detect dark mode in Jupyter environments.
 
-This package provides a simple API to detect whether Jupyter Notebook/Lab
-is running in dark mode across different environments.
+This package provides a simple API to detect whether Jupyter
+Notebook/Lab is running in dark mode across different environments.
 """
 
 from .detector import is_dark
diff --git a/src/easydiffraction/utils/_vendored/jupyter_dark_detect/detector.py b/src/easydiffraction/utils/_vendored/jupyter_dark_detect/detector.py
index 8f34b5af..e247ba87 100644
--- a/src/easydiffraction/utils/_vendored/jupyter_dark_detect/detector.py
+++ b/src/easydiffraction/utils/_vendored/jupyter_dark_detect/detector.py
@@ -14,14 +14,11 @@
 def is_dark() -> bool:
     """Check if Jupyter Notebook/Lab is running in dark mode.
 
-    This function attempts multiple detection strategies:
-    1. JupyterLab theme settings files
-    2. VS Code settings (when running in VS Code)
-    3. JavaScript DOM inspection
-    4. System preferences (macOS)
-
-    Returns:
-        bool: True if dark mode is detected, False otherwise
+    This function attempts multiple detection strategies: 1. JupyterLab
+    theme settings files 2. VS Code settings (when running in VS Code)
+    3. JavaScript DOM inspection 4. System preferences (macOS)
+
+    Returns:     bool: True if dark mode is detected, False otherwise
     """
     # Try JupyterLab settings first
     result = _check_jupyterlab_settings()
diff --git a/src/easydiffraction/utils/_vendored/theme_detect.py b/src/easydiffraction/utils/_vendored/theme_detect.py
index 1d555f0a..9f75ee72 100644
--- a/src/easydiffraction/utils/_vendored/theme_detect.py
+++ b/src/easydiffraction/utils/_vendored/theme_detect.py
@@ -1,6 +1,7 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
-"""Jupyter theme detection with custom detection order.
+"""
+Jupyter theme detection with custom detection order.
 
 This module wraps the vendored jupyter_dark_detect package and provides
 a custom detection order optimized for EasyDiffraction's use case.
@@ -12,15 +13,12 @@
 3. JavaScript DOM inspection (for browser-based environments)
 4. System preferences (macOS, Windows) - fallback only
 
-Note:
-    The detection order differs from upstream jupyter_dark_detect.
-    We prioritize JavaScript DOM inspection over system preferences
-    because the Jupyter theme may differ from the system theme.
+Note: The detection order differs from upstream jupyter_dark_detect. We
+prioritize JavaScript DOM inspection over system preferences because the
+Jupyter theme may differ from the system theme.
 
-Example:
-    >>> from easydiffraction.utils._vendored.theme_detect import is_dark
-    >>> if is_dark():
-    ...     print('Dark mode detected')
+Example: >>> from easydiffraction.utils._vendored.theme_detect import
+is_dark >>> if is_dark(): ...     print('Dark mode detected')
 """
 
 from __future__ import annotations
@@ -37,19 +35,22 @@
 
 
 def is_dark() -> bool:
-    """Check if the Jupyter environment is running in dark mode.
+    """
+    Check if the Jupyter environment is running in dark mode.
 
     This function uses a custom detection order that prioritizes
     Jupyter-specific detection over system preferences.
 
     Detection order:
 
-    1. JupyterLab settings files (most reliable for JupyterLab)
-    2. VS Code settings (when running in VS Code)
-    3. JavaScript DOM inspection (for browser-based Jupyter)
-    4. System preferences (fallback - may differ from Jupyter theme)
+    1. JupyterLab settings files (most reliable for JupyterLab) 2. VS
+    Code settings (when running in VS Code) 3. JavaScript DOM inspection
+    (for browser-based Jupyter) 4. System preferences (fallback - may
+    differ from Jupyter theme)
 
-    Returns:
+    Returns
+    -------
+    bool
         True if dark mode is detected, False otherwise.
     """
     # Try Jupyter-specific methods first
@@ -77,11 +78,14 @@ def is_dark() -> bool:
 
 
 def get_detection_result() -> dict[str, Optional[bool]]:
-    """Get results from all detection methods for debugging.
+    """
+    Get results from all detection methods for debugging.
 
-    Returns:
-        Dictionary with detection method names as keys and their
-        results (True/False/None) as values.
+    Returns
+    -------
+    dict[str, Optional[bool]]
+        Dictionary with detection method names as keys and their results
+        (True/False/None) as values.
     """
     return {
         'jupyterlab_settings': _check_jupyterlab_settings(),
diff --git a/src/easydiffraction/utils/environment.py b/src/easydiffraction/utils/environment.py
index aa7de5a6..2c518092 100644
--- a/src/easydiffraction/utils/environment.py
+++ b/src/easydiffraction/utils/environment.py
@@ -1,4 +1,4 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2025 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 
 from __future__ import annotations
@@ -9,27 +9,50 @@
 
 
 def in_pytest() -> bool:
+    """
+    Determine whether the code is running inside a pytest session.
+
+    Returns
+    -------
+    bool
+        True if pytest is loaded, False otherwise.
+    """
     return 'pytest' in sys.modules
 
 
 def in_warp() -> bool:
+    """
+    Determine whether the terminal is the Warp terminal emulator.
+
+    Returns
+    -------
+    bool
+        True if the TERM_PROGRAM environment variable equals
+        ``'WarpTerminal'``, False otherwise.
+    """
     return os.getenv('TERM_PROGRAM') == 'WarpTerminal'
 
 
 def in_pycharm() -> bool:
-    """Determines if the current environment is PyCharm.
+    """
+    Check whether the current environment is PyCharm.
 
-    Returns:
-        bool: True if running inside PyCharm, False otherwise.
+    Returns
+    -------
+    bool
+        True if running inside PyCharm, False otherwise.
     """
     return os.environ.get('PYCHARM_HOSTED') == '1'
 
 
 def in_colab() -> bool:
-    """Determines if the current environment is Google Colab.
+    """
+    Check whether the current environment is Google Colab.
 
-    Returns:
-        bool: True if running in Google Colab, False otherwise.
+    Returns
+    -------
+    bool
+        True if running in Google Colab, False otherwise.
     """
     try:
         return find_spec('google.colab') is not None
@@ -38,10 +61,13 @@ def in_colab() -> bool:
 
 
 def in_jupyter() -> bool:
-    """Return True when running inside a Jupyter Notebook.
+    """
+    Return True when running inside a Jupyter Notebook.
 
-    Returns:
-        bool: True if inside a Jupyter Notebook, False otherwise.
+    Returns
+    -------
+    bool
+        True if inside a Jupyter Notebook, False otherwise.
     """
     try:
         import IPython  # type: ignore[import-not-found]
@@ -76,11 +102,13 @@ def in_jupyter() -> bool:
 
 
 def in_github_ci() -> bool:
-    """Return True when running under GitHub Actions CI.
+    """
+    Return True when running under GitHub Actions CI.
 
-    Returns:
-        bool: True if env var ``GITHUB_ACTIONS`` is set, False
-        otherwise.
+    Returns
+    -------
+    bool
+        True if env var ``GITHUB_ACTIONS`` is set, False otherwise.
     """
     return os.environ.get('GITHUB_ACTIONS') is not None
 
@@ -91,12 +119,13 @@ def in_github_ci() -> bool:
 
 
 def is_ipython_display_handle(obj: object) -> bool:
-    """Return True if ``obj`` is an IPython DisplayHandle instance.
+    """
+    Return True if ``obj`` is an IPython DisplayHandle instance.
 
     Tries to import ``IPython.display.DisplayHandle`` and uses
-    ``isinstance`` when available. Falls back to a conservative
-    module name heuristic if IPython is missing. Any errors result
-    in ``False``.
+    ``isinstance`` when available. Falls back to a conservative module
+    name heuristic if IPython is missing. Any errors result in
+    ``False``.
     """
     try:  # Fast path when IPython is available
         from IPython.display import DisplayHandle  # type: ignore[import-not-found]
@@ -115,7 +144,8 @@ def is_ipython_display_handle(obj: object) -> bool:
 
 
 def can_update_ipython_display() -> bool:
-    """Return True if IPython HTML display utilities are available.
+    """
+    Return True if IPython HTML display utilities are available.
 
     This indicates we can safely construct ``IPython.display.HTML`` and
     update a display handle.
@@ -129,7 +159,8 @@ def can_update_ipython_display() -> bool:
 
 
 def can_use_ipython_display(handle: object) -> bool:
-    """Return True if we can update the given IPython DisplayHandle.
+    """
+    Return True if we can update the given IPython DisplayHandle.
 
     Combines type checking of the handle with availability of IPython
     HTML utilities.
diff --git a/src/easydiffraction/utils/logging.py b/src/easydiffraction/utils/logging.py
index 056d650b..876d7956 100644
--- a/src/easydiffraction/utils/logging.py
+++ b/src/easydiffraction/utils/logging.py
@@ -1,6 +1,7 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2025 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
-"""Project-wide logging utilities built on top of Rich.
+"""
+Project-wide logging utilities built on top of Rich.
 
 Provides a shared Rich console, a compact/verbose logger with consistent
 formatting, Jupyter traceback handling, and a small printing façade
@@ -43,9 +44,7 @@
 
 
 class IconifiedRichHandler(RichHandler):
-    """RichHandler that uses icons for log levels in compact mode, Rich
-    default in verbose mode.
-    """
+    """RichHandler using icons (compact) or names (verbose)."""
 
     _icons = {
         logging.CRITICAL: '💀',
@@ -55,11 +54,24 @@ class IconifiedRichHandler(RichHandler):
         logging.INFO: 'ℹ️',
     }
 
-    def __init__(self, *args, mode: str = 'compact', **kwargs):
+    def __init__(self, *args: object, mode: str = 'compact', **kwargs: object) -> None:
         super().__init__(*args, **kwargs)
         self.mode = mode
 
     def get_level_text(self, record: logging.LogRecord) -> Text:
+        """
+        Return an icon or level name for the log record.
+
+        Parameters
+        ----------
+        record : logging.LogRecord
+            The log record being rendered.
+
+        Returns
+        -------
+        Text
+            A Rich Text object with the level indicator.
+        """
         if self.mode == 'compact':
             icon = self._icons.get(record.levelno, record.levelname)
             if in_warp() and not in_jupyter() and icon in ['⚠️', '⚙️', 'ℹ️']:
@@ -70,9 +82,21 @@ def get_level_text(self, record: logging.LogRecord) -> Text:
             return super().get_level_text(record)
 
     def render_message(self, record: logging.LogRecord, message: str) -> Text:
-        # In compact mode, let the icon come from get_level_text and
-        # keep the message body unadorned. In verbose mode, defer to
-        # RichHandler.
+        """
+        Render the log message body as a Rich Text object.
+
+        Parameters
+        ----------
+        record : logging.LogRecord
+            The log record being rendered.
+        message : str
+            Pre-formatted log message string.
+
+        Returns
+        -------
+        Text
+            A Rich Text object with the rendered message.
+        """
         if self.mode == 'compact':
             try:
                 return Text.from_markup(message)
@@ -94,9 +118,12 @@ class ConsoleManager:
 
     @staticmethod
     def _detect_width() -> int:
-        """Detect a suitable console width for the shared Console.
+        """
+        Detect a suitable console width for the shared Console.
 
-        Returns:
+        Returns
+        -------
+        int
             The detected terminal width, clamped at
             ``_MIN_CONSOLE_WIDTH`` to avoid cramped layouts.
         """
@@ -134,13 +161,19 @@ def setup_handlers(
         rich_tracebacks: bool,
         mode: str = 'compact',
     ) -> None:
-        """Install Rich handler and optional Jupyter traceback support.
-
-        Args:
-            logger: Logger instance to attach handlers to.
-            level: Minimum log level to emit.
-            rich_tracebacks: Whether to enable Rich tracebacks.
-            mode: Output mode name ("compact" or "verbose").
+        """
+        Install Rich handler and optional Jupyter traceback support.
+
+        Parameters
+        ----------
+        logger : logging.Logger
+            Logger instance to attach handlers to.
+        level : int
+            Minimum log level to emit.
+        rich_tracebacks : bool
+            Whether to enable Rich tracebacks.
+        mode : str, default='compact'
+            Output mode name ("compact" or "verbose").
         """
         logger.handlers.clear()
         logger.propagate = False
@@ -175,13 +208,19 @@ def configure(
         level: 'Logger.Level',
         rich_tracebacks: bool,
     ) -> None:
-        """Configure the logger with RichHandler and exception hooks.
-
-        Args:
-            logger: Logger instance to configure.
-            mode: Output mode (compact or verbose).
-            level: Minimum log level to emit.
-            rich_tracebacks: Whether to enable Rich tracebacks.
+        """
+        Configure the logger with RichHandler and exception hooks.
+
+        Parameters
+        ----------
+        logger : logging.Logger
+            Logger instance to configure.
+        mode : 'Logger.Mode'
+            Output mode (compact or verbose).
+        level : 'Logger.Level'
+            Minimum log level to emit.
+        rich_tracebacks : bool
+            Whether to enable Rich tracebacks.
         """
         LoggerConfig.setup_handlers(
             logger,
@@ -204,10 +243,13 @@ class ExceptionHookManager:
 
     @staticmethod
     def install_verbose_hook(logger: logging.Logger) -> None:
-        """Install a verbose exception hook that prints rich tracebacks.
+        """
+        Install a verbose exception hook that prints rich tracebacks.
 
-        Args:
-            logger: Logger used to emit the exception information.
+        Parameters
+        ----------
+        logger : logging.Logger
+            Logger used to emit the exception information.
         """
         if not hasattr(Logger, '_orig_excepthook'):
             Logger._orig_excepthook = sys.excepthook  # type: ignore[attr-defined]
@@ -217,6 +259,7 @@ def aligned_excepthook(
             exc: BaseException,
             tb: 'TracebackType | None',
         ) -> None:
+            """Log the exception with full traceback via Rich."""
             original_args = getattr(exc, 'args', tuple())
             message = str(exc)
             with suppress(Exception):
@@ -233,10 +276,13 @@ def aligned_excepthook(
 
     @staticmethod
     def install_compact_hook(logger: logging.Logger) -> None:
-        """Install a compact exception hook that logs message-only.
+        """
+        Install a compact exception hook that logs message-only.
 
-        Args:
-            logger: Logger used to emit the error message.
+        Parameters
+        ----------
+        logger : logging.Logger
+            Logger used to emit the error message.
         """
         if not hasattr(Logger, '_orig_excepthook'):
             Logger._orig_excepthook = sys.excepthook  # type: ignore[attr-defined]
@@ -246,33 +292,39 @@ def compact_excepthook(
             exc: BaseException,
             _tb: 'TracebackType | None',
         ) -> None:
+            """Log the exception message and exit."""
             logger.error(str(exc))
             raise SystemExit(1)
 
         sys.excepthook = compact_excepthook  # type: ignore[assignment]
 
     @staticmethod
-    def restore_original_hook():
+    def restore_original_hook() -> None:
         """Restore the original sys.excepthook if it was overridden."""
         if hasattr(Logger, '_orig_excepthook'):
             sys.excepthook = Logger._orig_excepthook  # type: ignore[attr-defined]
 
     # Jupyter-specific traceback suppression (inlined here)
     @staticmethod
-    def _suppress_traceback(logger):
-        """Build a Jupyter custom exception callback that logs only the
-        message.
+    def _suppress_traceback(logger: object) -> object:
+        """
+        Build a Jupyter exception callback that logs the message only.
 
-        Args:
-            logger: Logger used to emit error messages.
+        Parameters
+        ----------
+        logger : object
+            Logger used to emit error messages.
 
-        Returns:
+        Returns
+        -------
+        object
             A callable suitable for IPython's set_custom_exc that
             suppresses full tracebacks and logs only the exception
             message.
         """
 
-        def suppress_jupyter_traceback(*args, **kwargs):
+        def suppress_jupyter_traceback(*args: object, **kwargs: object) -> None:
+            """Log only the exception message."""
             try:
                 _evalue = (
                     args[2] if len(args) > 2 else kwargs.get('_evalue') or kwargs.get('evalue')
@@ -286,11 +338,13 @@ def suppress_jupyter_traceback(*args, **kwargs):
 
     @staticmethod
     def install_jupyter_traceback_suppressor(logger: logging.Logger) -> None:
-        """Install a Jupyter/IPython custom exception handler that
-        suppresses tracebacks.
+        """
+        Install a Jupyter/IPython exception handler for tracebacks.
 
-        Args:
-            logger: Logger used to emit error messages.
+        Parameters
+        ----------
+        logger : logging.Logger
+            Logger used to emit error messages.
         """
         try:
             from IPython import get_ipython
@@ -311,11 +365,11 @@ def install_jupyter_traceback_suppressor(logger: logging.Logger) -> None:
 
 
 class Logger:
-    """Centralized logging with Rich formatting and two modes.
+    """
+    Centralized logging with Rich formatting and two modes.
 
-    Environment variables:
-    ED_LOG_MODE: set default mode ('verbose' or 'compact')
-    ED_LOG_LEVEL: set default level ('DEBUG', 'INFO', etc.)
+    Environment variables: ED_LOG_MODE: set default mode ('verbose' or
+    'compact') ED_LOG_LEVEL: set default level ('DEBUG', 'INFO', etc.)
     """
 
     # --- Enums ---
@@ -326,7 +380,8 @@ class Mode(Enum):
         COMPACT = 'compact'  # single line; no traceback
 
         @classmethod
-        def default(cls):
+        def default(cls) -> Logger.Mode:
+            """Return the default output mode (compact)."""
             return cls.COMPACT
 
     class Level(IntEnum):
@@ -339,7 +394,8 @@ class Level(IntEnum):
         CRITICAL = logging.CRITICAL
 
         @classmethod
-        def default(cls):
+        def default(cls) -> Logger.Level:
+            """Return the default log level (WARNING)."""
             return cls.WARNING
 
     class Reaction(Enum):
@@ -349,7 +405,8 @@ class Reaction(Enum):
         WARN = auto()
 
         @classmethod
-        def default(cls):
+        def default(cls) -> Logger.Reaction:
+            """Return the default error reaction (RAISE)."""
             return cls.RAISE
 
     # --- Internal state ---
@@ -369,15 +426,15 @@ def configure(
         reaction: Reaction | None = None,
         rich_tracebacks: bool | None = None,
     ) -> None:
-        """Configure logger.
+        """
+        Configure logger.
 
-        mode: default COMPACT in Jupyter else VERBOSE
-        level: minimum log level
-        rich_tracebacks: override automatic choice
+        mode: default COMPACT in Jupyter else VERBOSE level: minimum log
+        level rich_tracebacks: override automatic choice
 
-        Environment variables:
-        ED_LOG_MODE: set default mode ('verbose' or 'compact')
-        ED_LOG_LEVEL: set default level ('DEBUG', 'INFO', etc.)
+        Environment variables: ED_LOG_MODE: set default mode ('verbose'
+        or 'compact') ED_LOG_LEVEL: set default level ('DEBUG', 'INFO',
+        etc.)
         """
         env_mode = os.getenv('ED_LOG_MODE')
         env_level = os.getenv('ED_LOG_LEVEL')
@@ -418,22 +475,44 @@ def configure(
 
     @classmethod
     def _install_jupyter_traceback_suppressor(cls) -> None:
-        """Install traceback suppressor in Jupyter, safely and lint-
-        clean.
-        """
+        """Install the Jupyter traceback suppressor safely."""
         ExceptionHookManager.install_jupyter_traceback_suppressor(cls._logger)
 
     # ===== Helpers =====
     @classmethod
     def set_mode(cls, mode: Mode) -> None:
+        """
+        Set the output mode and reconfigure the logger.
+
+        Parameters
+        ----------
+        mode : Mode
+            The desired output mode (VERBOSE or COMPACT).
+        """
         cls.configure(mode=mode, level=cls.Level(cls._logger.level))
 
     @classmethod
     def set_level(cls, level: Level) -> None:
+        """
+        Set the minimum log level and reconfigure the logger.
+
+        Parameters
+        ----------
+        level : Level
+            The desired minimum log level.
+        """
         cls.configure(mode=cls._mode, level=level)
 
     @classmethod
     def mode(cls) -> Mode:
+        """
+        Return the currently active output mode.
+
+        Returns
+        -------
+        Mode
+            The current Logger.Mode value.
+        """
         return cls._mode
 
     @classmethod
@@ -478,22 +557,68 @@ def handle(
 
     @classmethod
     def debug(cls, *messages: str) -> None:
+        """
+        Log one or more messages at DEBUG level.
+
+        Parameters
+        ----------
+        *messages : str
+            Message parts joined with a space before logging.
+        """
         cls.handle(*messages, level=cls.Level.DEBUG, exc_type=None)
 
     @classmethod
     def info(cls, *messages: str) -> None:
+        """
+        Log one or more messages at INFO level.
+
+        Parameters
+        ----------
+        *messages : str
+            Message parts joined with a space before logging.
+        """
         cls.handle(*messages, level=cls.Level.INFO, exc_type=None)
 
     @classmethod
     def warning(cls, *messages: str, exc_type: type[BaseException] | None = None) -> None:
+        """
+        Log one or more messages at WARNING level.
+
+        Parameters
+        ----------
+        *messages : str
+            Message parts joined with a space before logging.
+        exc_type : type[BaseException] | None, default=None
+            If provided, raise this exception type instead of logging.
+        """
         cls.handle(*messages, level=cls.Level.WARNING, exc_type=exc_type)
 
     @classmethod
     def error(cls, *messages: str, exc_type: type[BaseException] = AttributeError) -> None:
+        """
+        Log one or more messages at ERROR level.
+
+        Parameters
+        ----------
+        *messages : str
+            Message parts joined with a space before logging.
+        exc_type : type[BaseException], default=AttributeError
+            Exception type to raise in VERBOSE/COMPACT mode.
+        """
         cls.handle(*messages, level=cls.Level.ERROR, exc_type=exc_type)
 
     @classmethod
     def critical(cls, *messages: str, exc_type: type[BaseException] = RuntimeError) -> None:
+        """
+        Log one or more messages at CRITICAL level.
+
+        Parameters
+        ----------
+        *messages : str
+            Message parts joined with a space before logging.
+        exc_type : type[BaseException], default=RuntimeError
+            Exception type to raise in VERBOSE/COMPACT mode.
+        """
         cls.handle(*messages, level=cls.Level.CRITICAL, exc_type=exc_type)
 
 
@@ -503,20 +628,18 @@ def critical(cls, *messages: str, exc_type: type[BaseException] = RuntimeError)
 
 
 class ConsolePrinter:
-    """Printer utility that prints objects to the shared console with
-    left padding.
-    """
+    """Printer utility for the shared console with left padding."""
 
     _console = ConsoleManager.get()
 
     @classmethod
-    def print(cls, *objects, **kwargs):
-        """Print objects to the console with left padding.
+    def print(cls, *objects: object, **kwargs: object) -> None:
+        """
+        Print objects to the console with left padding.
 
         - Renderables (Rich types like Text, Table, Panel, etc.) are
-          kept as-is.
-        - Non-renderables (ints, floats, Path, etc.) are converted to
-          str().
+        kept as-is. - Non-renderables (ints, floats, Path, etc.) are
+        converted to   str().
         """
         safe_objects = []
         for obj in objects:
@@ -538,6 +661,15 @@ def print(cls, *objects, **kwargs):
 
     @classmethod
     def paragraph(cls, title: str) -> None:
+        """
+        Print a bold blue paragraph heading.
+
+        Parameters
+        ----------
+        title : str
+            Heading text; substrings enclosed in single quotes are
+            rendered without the bold-blue style.
+        """
         parts = re.split(r"('.*?')", title)
         text = Text()
         for part in parts:
@@ -552,7 +684,7 @@ def paragraph(cls, title: str) -> None:
 
     @classmethod
     def section(cls, title: str) -> None:
-        """Formats a section header with bold green text."""
+        """Format a section header with bold green text."""
         full_title = f'{title.upper()}'
         line = '—' * len(full_title)
         formatted = f'[bold green]{line}\n{full_title}\n{line}[/bold green]'
@@ -562,9 +694,7 @@ def section(cls, title: str) -> None:
 
     @classmethod
     def chapter(cls, title: str) -> None:
-        """Formats a chapter header with bold magenta text, uppercase,
-        and padding.
-        """
+        """Format a chapter header in bold magenta, uppercase."""
         width = ConsoleManager._detect_width()
         symbol = '—'
         full_title = f' {title.upper()} '
diff --git a/src/easydiffraction/utils/utils.py b/src/easydiffraction/utils/utils.py
index 82118302..3e8c5f1e 100644
--- a/src/easydiffraction/utils/utils.py
+++ b/src/easydiffraction/utils/utils.py
@@ -1,4 +1,4 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2025 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 
 from __future__ import annotations
@@ -30,13 +30,18 @@
 
 
 def _validate_url(url: str) -> None:
-    """Validate that a URL uses only safe HTTP/HTTPS schemes.
+    """
+    Validate that a URL uses only safe HTTP/HTTPS schemes.
 
-    Args:
-        url: The URL to validate.
+    Parameters
+    ----------
+    url : str
+        The URL to validate.
 
-    Raises:
-        ValueError: If the URL scheme is not HTTP or HTTPS.
+    Raises
+    ------
+    ValueError
+        If the URL scheme is not HTTP or HTTPS.
     """
     parsed = urlparse(url)
     if parsed.scheme not in ('http', 'https'):
@@ -44,16 +49,15 @@ def _validate_url(url: str) -> None:
 
 
 def _filename_for_id_from_url(data_id: int | str, url: str) -> str:
-    """Return local filename like 'ed-12.xye' using extension from the
-    URL.
-    """
+    """Return local filename using the extension from the URL."""
     suffix = pathlib.Path(urlparse(url).path).suffix  # includes leading dot ('.cif', '.xye', ...)
     # If URL has no suffix, fall back to no extension.
     return f'ed-{data_id}{suffix}'
 
 
 def _normalize_known_hash(value: str | None) -> str | None:
-    """Return pooch-compatible known_hash or None.
+    """
+    Return pooch-compatible known_hash or None.
 
     Treat placeholder values like 'sha256:...' as unset.
     """
@@ -66,9 +70,7 @@ def _normalize_known_hash(value: str | None) -> str | None:
 
 
 def _fetch_data_index() -> dict:
-    """Fetch & cache the diffraction data index.json and return it as
-    dict.
-    """
+    """Fetch and cache the diffraction data index.json."""
     index_url = 'https://raw.githubusercontent.com/easyscience/data/refs/heads/master/diffraction/index.json'
     _validate_url(index_url)
 
@@ -92,18 +94,20 @@ def _fetch_data_index() -> dict:
 
 @functools.lru_cache(maxsize=1)
 def _fetch_tutorials_index() -> dict:
-    """Fetch & cache the tutorials index.json from gh-pages and return
-    it as dict.
+    """
+    Fetch and cache the tutorials index.json from gh-pages.
 
     The index is fetched from:
     https://easyscience.github.io/diffraction-lib/{version}/tutorials/index.json
 
-    For released versions, {version} is the public version string
-    (e.g., '0.8.0.post1'). For development versions, 'dev' is used.
+    For released versions, {version} is the public version string (e.g.,
+    '0.8.0.post1'). For development versions, 'dev' is used.
 
-    Returns:
-        dict: The tutorials index as a dictionary, or empty dict if
-            fetch fails.
+    Returns
+    -------
+    dict
+        The tutorials index as a dictionary, or empty dict if fetch
+        fails.
     """
     version = _get_version_for_url()
     index_url = f'https://easyscience.github.io/diffraction-lib/{version}/tutorials/index.json'
@@ -125,24 +129,29 @@ def download_data(
     destination: str = 'data',
     overwrite: bool = False,
 ) -> str:
-    """Download a dataset by numeric ID using the remote diffraction
-    index.
-
-    Example:
-        path = download_data(id=12, destination="data")
+    """
+    Download a dataset by numeric ID using the remote diffraction index.
 
-    Args:
-        id: Numeric dataset id (e.g. 12).
-        destination: Directory to save the file into (created if
-            missing).
-        overwrite: Whether to overwrite the file if it already exists.
+    Example: path = download_data(id=12, destination="data")
 
-    Returns:
-        str: Full path to the downloaded file as string.
+    Parameters
+    ----------
+    id : int | str
+        Numeric dataset id (e.g. 12).
+    destination : str, default='data'
+        Directory to save the file into (created if missing).
+    overwrite : bool, default=False
+        Whether to overwrite the file if it already exists.
+
+    Returns
+    -------
+    str
+        Full path to the downloaded file as string.
 
-    Raises:
-        KeyError: If the id is not found in the index.
-        ValueError: If the resolved URL is not HTTP/HTTPS.
+    Raises
+    ------
+    KeyError
+        If the id is not found in the index.
     """
     index = _fetch_data_index()
     key = str(id)
@@ -195,14 +204,19 @@ def download_data(
 
 
 def package_version(package_name: str) -> str | None:
-    """Get the installed version string of the specified package.
+    """
+    Get the installed version string of the specified package.
 
-    Args:
-        package_name (str): The name of the package to query.
+    Parameters
+    ----------
+    package_name : str
+        The name of the package to query.
 
-    Returns:
-        str | None: The raw version string (may include local part,
-        e.g., '1.2.3+abc123'), or None if the package is not installed.
+    Returns
+    -------
+    str | None
+        The raw version string (may include local part, e.g.,
+        '1.2.3+abc123'), or None if the package is not installed.
     """
     try:
         return version(package_name)
@@ -211,18 +225,22 @@ def package_version(package_name: str) -> str | None:
 
 
 def stripped_package_version(package_name: str) -> str | None:
-    """Get the installed version of the specified package, stripped of
-    any local version part.
+    """
+    Get installed package version, stripped of local version parts.
 
     Returns only the public version segment (e.g., '1.2.3' or
     '1.2.3.post4'), omitting any local segment (e.g., '+d136').
 
-    Args:
-        package_name (str): The name of the package to query.
+    Parameters
+    ----------
+    package_name : str
+        The name of the package to query.
 
-    Returns:
-        str | None: The public version string, or None if the package
-        is not installed.
+    Returns
+    -------
+    str | None
+        The public version string, or None if the package is not
+        installed.
     """
     v_str = package_version(package_name)
     if v_str is None:
@@ -235,21 +253,22 @@ def stripped_package_version(package_name: str) -> str | None:
 
 
 def _is_dev_version(package_name: str) -> bool:
-    """Check if the installed package version is a development/local
-    version.
+    """
+    Check if the installed package version is a dev version.
 
-    A version is considered "dev" if:
-    - The raw version contains '+dev', '+dirty', or '+devdirty' (local
-      suffixes from versioningit)
-    - The public version is '999.0.0' (versioningit default-tag
-      fallback)
+    A version is considered "dev" if: - The raw version contains '+dev',
+    '+dirty', or '+devdirty' (local suffixes from versioningit) - The
+    public version is '999.0.0' (versioningit default-tag fallback)
 
-    Args:
-        package_name (str): The name of the package to query.
+    Parameters
+    ----------
+    package_name : str
+        The name of the package to query.
 
-    Returns:
-        bool: True if the version is a development version, False
-            otherwise.
+    Returns
+    -------
+    bool
+        True if the version is a development version, False otherwise.
     """
     raw_version = package_version(package_name)
     if raw_version is None:
@@ -265,26 +284,31 @@ def _is_dev_version(package_name: str) -> bool:
 
 
 def _get_version_for_url(package_name: str = 'easydiffraction') -> str:
-    """Get the version string to use in URLs for fetching remote
-    resources.
+    """
+    Get the version string to use in URLs for fetching remote resources.
 
     Returns the public version for released versions, or 'dev' for
     development/local versions.
 
-    Args:
-        package_name (str): The name of the package to query.
+    Parameters
+    ----------
+    package_name : str, default='easydiffraction'
+        The name of the package to query.
 
-    Returns:
-        str: The version string to use in URLs ('dev' or a version like
-            '0.8.0.post1').
+    Returns
+    -------
+    str
+        The version string to use in URLs ('dev' or a version like
+        '0.8.0.post1').
     """
     if _is_dev_version(package_name):
         return 'dev'
     return stripped_package_version(package_name) or 'dev'
 
 
-def _safe_urlopen(request_or_url):  # type: ignore[no-untyped-def]
-    """Wrapper for urlopen with prior validation.
+def _safe_urlopen(request_or_url: object) -> object:  # type: ignore[no-untyped-def]
+    """
+    Open a URL with prior validation.
 
     Centralises lint suppression for validated HTTPS requests.
     """
@@ -301,25 +325,29 @@ def _safe_urlopen(request_or_url):  # type: ignore[no-untyped-def]
 
 
 def _resolve_tutorial_url(url_template: str) -> str:
-    """Replace {version} placeholder in URL template with actual
-    version.
+    """
+    Replace {version} placeholder in URL template with actual version.
 
-    Args:
-        url_template (str): URL template containing {version}
-            placeholder.
+    Parameters
+    ----------
+    url_template : str
+        URL template containing {version} placeholder.
 
-    Returns:
-        str: URL with {version} replaced by actual version string.
+    Returns
+    -------
+    str
+        URL with {version} replaced by actual version string.
     """
     version = _get_version_for_url()
     return url_template.replace('{version}', version)
 
 
 def list_tutorials() -> None:
-    """Display a table of available tutorial notebooks.
+    """
+    Display a table of available tutorial notebooks.
 
-    Shows tutorial ID, filename, title, and description for all
-    tutorials available for the current version of easydiffraction.
+    Shows tutorial ID, filename and title for all tutorials available
+    for the current version of easydiffraction.
     """
     index = _fetch_tutorials_index()
     if not index:
@@ -327,19 +355,17 @@ def list_tutorials() -> None:
         return
 
     version = _get_version_for_url()
-    console.print(f'Tutorials available for easydiffraction v{version}:')
-    console.print('')
+    console.paragraph(f'Tutorials available for easydiffraction v{version}:')
 
-    columns_headers = ['id', 'file', 'title', 'description']
-    columns_alignment = ['right', 'left', 'left', 'left']
+    columns_headers = ['id', 'file', 'title']
+    columns_alignment = ['right', 'left', 'left']
     columns_data = []
 
-    for tutorial_id in sorted(index.keys(), key=lambda x: int(x) if x.isdigit() else x):
+    for tutorial_id in index:
         record = index[tutorial_id]
         filename = f'ed-{tutorial_id}.ipynb'
         title = record.get('title', '')
-        description = record.get('description', '')
-        columns_data.append([tutorial_id, filename, title, description])
+        columns_data.append([tutorial_id, filename, title])
 
     render_table(
         columns_headers=columns_headers,
@@ -353,23 +379,29 @@ def download_tutorial(
     destination: str = 'tutorials',
     overwrite: bool = False,
 ) -> str:
-    """Download a tutorial notebook by numeric ID.
-
-    Example:
-        path = download_tutorial(id=1, destination="tutorials")
+    """
+    Download a tutorial notebook by numeric ID.
 
-    Args:
-        id: Numeric tutorial id (e.g. 1).
-        destination: Directory to save the file into (created if
-            missing).
-        overwrite: Whether to overwrite the file if it already exists.
+    Example: path = download_tutorial(id=1, destination="tutorials")
 
-    Returns:
-        str: Full path to the downloaded file as string.
+    Parameters
+    ----------
+    id : int | str
+        Numeric tutorial id (e.g. 1).
+    destination : str, default='tutorials'
+        Directory to save the file into (created if missing).
+    overwrite : bool, default=False
+        Whether to overwrite the file if it already exists.
+
+    Returns
+    -------
+    str
+        Full path to the downloaded file as string.
 
-    Raises:
-        KeyError: If the id is not found in the index.
-        ValueError: If the resolved URL is not HTTP/HTTPS.
+    Raises
+    ------
+    KeyError
+        If the id is not found in the index.
     """
     index = _fetch_tutorials_index()
     key = str(id)
@@ -420,18 +452,22 @@ def download_all_tutorials(
     destination: str = 'tutorials',
     overwrite: bool = False,
 ) -> list[str]:
-    """Download all available tutorial notebooks.
+    """
+    Download all available tutorial notebooks.
 
-    Example:
-        paths = download_all_tutorials(destination="tutorials")
+    Example: paths = download_all_tutorials(destination="tutorials")
 
-    Args:
-        destination: Directory to save the files into (created if
-            missing).
-        overwrite: Whether to overwrite files if they already exist.
+    Parameters
+    ----------
+    destination : str, default='tutorials'
+        Directory to save the files into (created if missing).
+    overwrite : bool, default=False
+        Whether to overwrite files if they already exist.
 
-    Returns:
-        list[str]: List of full paths to the downloaded files.
+    Returns
+    -------
+    list[str]
+        List of full paths to the downloaded files.
     """
     index = _fetch_tutorials_index()
     if not index:
@@ -458,11 +494,7 @@ def download_all_tutorials(
 
 
 def show_version() -> None:
-    """Print the installed version of the easydiffraction package.
-
-    Args:
-        None
-    """
+    """Print the installed version of the easydiffraction package."""
     current_ed_version = package_version('easydiffraction')
     console.print(f'Current easydiffraction v{current_ed_version}')
 
@@ -470,11 +502,27 @@ def show_version() -> None:
 # TODO: This is a temporary utility function. Complete migration to
 #  TableRenderer (as e.g. in show_all_params) and remove this.
 def render_table(
-    columns_data,
-    columns_alignment,
-    columns_headers=None,
-    display_handle=None,
-):
+    columns_data: object,
+    columns_alignment: object,
+    columns_headers: object = None,
+    display_handle: object = None,
+) -> None:
+    """
+    Render tabular data to the active display backend.
+
+    Parameters
+    ----------
+    columns_data : object
+        A list of rows, where each row is a list of cell values.
+    columns_alignment : object
+        A list of alignment strings (e.g. ``'left'``, ``'right'``,
+        ``'center'``) matching the number of columns.
+    columns_headers : object, default=None
+        Optional list of column header strings.
+    display_handle : object, default=None
+        Optional display handle for in-place updates (e.g. in Jupyter or
+        a terminal Live context).
+    """
     headers = [
         (col, align) for col, align in zip(columns_headers, columns_alignment, strict=False)
     ]
@@ -484,12 +532,14 @@ def render_table(
     tabler.render(df, display_handle=display_handle)
 
 
-def render_cif(cif_text) -> None:
-    """Display the CIF text as a formatted table in Jupyter Notebook or
-    terminal.
+def render_cif(cif_text: str) -> None:
+    """
+    Display CIF text as a formatted table in Jupyter or terminal.
 
-    Args:
-        cif_text: The CIF text to display.
+    Parameters
+    ----------
+    cif_text : str
+        The CIF text to display.
     """
     # Split into lines
     lines: List[str] = [line for line in cif_text.splitlines()]
@@ -510,37 +560,42 @@ def tof_to_d(
     offset: float,
     linear: float,
     quad: float,
-    quad_eps=1e-20,
+    quad_eps: float = 1e-20,
 ) -> np.ndarray:
-    """Convert time-of-flight (TOF) to d-spacing using a quadratic
-    calibration.
-
-    Model:
-        TOF = offset + linear * d + quad * d²
-
-    The function:
-      - Uses a linear fallback when the quadratic term is effectively
-        zero.
-      - Solves the quadratic for d and selects the smallest positive,
-        finite root.
-      - Returns NaN where no valid solution exists.
-      - Expects ``tof`` as a NumPy array; output matches its shape.
-
-    Args:
-        tof (np.ndarray): Time-of-flight values (µs). Must be a NumPy
-            array.
-        offset (float): Calibration offset (µs).
-        linear (float): Linear calibration coefficient (µs/Å).
-        quad (float): Quadratic calibration coefficient (µs/Ų).
-        quad_eps (float, optional): Threshold to treat ``quad`` as zero.
-            Defaults to 1e-20.
-
-    Returns:
-        np.ndarray: d-spacing values (Å), NaN where invalid.
-
-    Raises:
-        TypeError: If ``tof`` is not a NumPy array or coefficients are
-            not real numbers.
+    """
+    Convert time-of-flight to d-spacing using quadratic calibration.
+
+    Model: TOF = offset + linear * d + quad * d²
+
+    The function: - Uses a linear fallback when the quadratic term is
+    effectively zero. - Solves the quadratic for d and selects the
+    smallest positive, finite root. - Returns NaN where no valid
+    solution exists. - Expects ``tof`` as a NumPy array; output matches
+    its shape.
+
+    Parameters
+    ----------
+    tof : np.ndarray
+        Time-of-flight values (µs). Must be a NumPy array.
+    offset : float
+        Calibration offset (µs).
+    linear : float
+        Linear calibration coefficient (µs/Å).
+    quad : float
+        Quadratic calibration coefficient (µs/Ų).
+    quad_eps : float, default=1e-20
+        Threshold to treat ``quad`` as zero.
+
+    Returns
+    -------
+    np.ndarray
+        d-spacing values (Å), NaN where invalid.
+
+    Raises
+    ------
+    TypeError
+        If ``tof`` is not a NumPy array or coefficients are not real
+        numbers.
     """
     # Type checks
     if not isinstance(tof, np.ndarray):
@@ -594,15 +649,21 @@ def tof_to_d(
     return d_out
 
 
-def twotheta_to_d(twotheta, wavelength):
-    """Convert 2-theta to d-spacing using Bragg's law.
+def twotheta_to_d(twotheta: object, wavelength: float) -> object:
+    """
+    Convert 2-theta to d-spacing using Bragg's law.
 
-    Parameters:
-        twotheta (float or np.ndarray): 2-theta angle in degrees.
-        wavelength (float): Wavelength in Å.
+    Parameters
+    ----------
+    twotheta : object
+        2-theta angle in degrees (float or np.ndarray).
+    wavelength : float
+        Wavelength in Å.
 
-    Returns:
-        d (float or np.ndarray): d-spacing in Å.
+    Returns
+    -------
+    object
+        d-spacing in Å (float or np.ndarray).
     """
     # Convert twotheta from degrees to radians
     theta_rad = np.radians(twotheta / 2)
@@ -613,15 +674,19 @@ def twotheta_to_d(twotheta, wavelength):
     return d
 
 
-def sin_theta_over_lambda_to_d_spacing(sin_theta_over_lambda):
-    """Convert sin(theta)/lambda to d-spacing.
+def sin_theta_over_lambda_to_d_spacing(sin_theta_over_lambda: object) -> object:
+    """
+    Convert sin(theta)/lambda to d-spacing.
 
-    Parameters:
-        sin_theta_over_lambda (float or np.ndarray): sin(theta)/lambda
-            in 1/Å.
+    Parameters
+    ----------
+    sin_theta_over_lambda : object
+        sin(theta)/lambda in 1/Å (float or np.ndarray).
 
-    Returns:
-        d (float or np.ndarray): d-spacing in Å.
+    Returns
+    -------
+    object
+        d-spacing in Å (float or np.ndarray).
     """
     # Avoid division by zero
     with np.errstate(divide='ignore', invalid='ignore'):
@@ -631,19 +696,26 @@ def sin_theta_over_lambda_to_d_spacing(sin_theta_over_lambda):
     return d
 
 
-def get_value_from_xye_header(file_path, key):
-    """Extracts a floating point value from the first line of the file,
-    corresponding to the given key.
+def get_value_from_xye_header(file_path: str, key: str) -> float:
+    """
+    Extract a float from the first line of the file by key.
 
-    Parameters:
-        file_path (str): Path to the input file.
-        key (str): The key to extract ('DIFC' or 'two_theta').
+    Parameters
+    ----------
+    file_path : str
+        Path to the input file.
+    key : str
+        The key to extract ('DIFC' or 'two_theta').
 
-    Returns:
-        float: The extracted value.
+    Returns
+    -------
+    float
+        The extracted value.
 
-    Raises:
-        ValueError: If the key is not found.
+    Raises
+    ------
+    ValueError
+        If the key is not found.
     """
     pattern = rf'{key}\s*=\s*([-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)?)'
 
@@ -658,35 +730,30 @@ def get_value_from_xye_header(file_path, key):
 
 
 def str_to_ufloat(s: Optional[str], default: Optional[float] = None) -> UFloat:
-    """Parse a CIF-style numeric string into a `ufloat` with an optional
-    uncertainty.
-
-    Examples of supported input:
-    - "3.566"       → ufloat(3.566, nan)
-    - "3.566(2)"    → ufloat(3.566, 0.002)
-    - None          → ufloat(default, nan)
-
-    Behavior:
-    - If the input string contains a value with parentheses (e.g.
-      "3.566(2)"), the number in parentheses is interpreted as an
-      estimated standard deviation (esd) in the last digit(s).
-    - If the input string has no parentheses, an uncertainty of NaN is
-      assigned to indicate "no esd provided".
-    - If parsing fails, the function falls back to the given `default`
-      value with uncertainty NaN.
+    """
+    Parse a CIF-style numeric string into a ufloat.
+
+    Examples of supported input: - "3.566" → ufloat(3.566, nan) -
+    "3.566(2)" → ufloat(3.566, 0.002) - None → ufloat(default, nan)
+
+    Behavior: - If the input string contains a value with parentheses
+    (e.g. "3.566(2)"), the number in parentheses is interpreted as an
+    estimated standard deviation (esd) in the last digit(s). - If the
+    input string has no parentheses, an uncertainty of NaN is assigned
+    to indicate "no esd provided". - If parsing fails, the function
+    falls back to the given ``default`` value with uncertainty NaN.
 
     Parameters
     ----------
-    s : str or None
+    s : Optional[str]
         Numeric string in CIF format (e.g. "3.566", "3.566(2)") or None.
-    default : float or None, optional
-        Default value to use if `s` is None or parsing fails.
-        Defaults to None.
+    default : Optional[float], default=None
+        Default value to use if ``s`` is None or parsing fails.
 
-    Returns:
+    Returns
     -------
     UFloat
-        An `uncertainties.UFloat` object with the parsed value and
+        An ``uncertainties.UFloat`` object with the parsed value and
         uncertainty. The uncertainty will be NaN if not specified or
         parsing failed.
     """
diff --git a/tests/integration/fitting/test_multi.py b/tests/integration/fitting/test_multi.py
index 60e78f0a..6b1a0c8f 100644
--- a/tests/integration/fitting/test_multi.py
+++ b/tests/integration/fitting/test_multi.py
@@ -1,4 +1,4 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 
 import tempfile
diff --git a/tests/integration/fitting/test_pair-distribution-function.py b/tests/integration/fitting/test_pair-distribution-function.py
index 823fd420..066e727e 100644
--- a/tests/integration/fitting/test_pair-distribution-function.py
+++ b/tests/integration/fitting/test_pair-distribution-function.py
@@ -1,4 +1,4 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 
 import tempfile
diff --git a/tests/integration/fitting/test_powder-diffraction_constant-wavelength.py b/tests/integration/fitting/test_powder-diffraction_constant-wavelength.py
index 49e7b4b1..5045dd27 100644
--- a/tests/integration/fitting/test_powder-diffraction_constant-wavelength.py
+++ b/tests/integration/fitting/test_powder-diffraction_constant-wavelength.py
@@ -1,4 +1,4 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 
 import tempfile
diff --git a/tests/integration/fitting/test_powder-diffraction_joint-fit.py b/tests/integration/fitting/test_powder-diffraction_joint-fit.py
index cc3e600e..fb94a8ff 100644
--- a/tests/integration/fitting/test_powder-diffraction_joint-fit.py
+++ b/tests/integration/fitting/test_powder-diffraction_joint-fit.py
@@ -1,4 +1,4 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 
 import tempfile
diff --git a/tests/integration/fitting/test_powder-diffraction_time-of-flight.py b/tests/integration/fitting/test_powder-diffraction_time-of-flight.py
index ae702b4d..18123254 100644
--- a/tests/integration/fitting/test_powder-diffraction_time-of-flight.py
+++ b/tests/integration/fitting/test_powder-diffraction_time-of-flight.py
@@ -1,4 +1,4 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 
 import tempfile
diff --git a/tests/integration/fitting/test_single-crystal-diffraction.py b/tests/integration/fitting/test_single-crystal-diffraction.py
index af915d92..f5273fdd 100644
--- a/tests/integration/fitting/test_single-crystal-diffraction.py
+++ b/tests/integration/fitting/test_single-crystal-diffraction.py
@@ -1,4 +1,4 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 
 import tempfile
diff --git a/tests/integration/scipp-analysis/dream/conftest.py b/tests/integration/scipp-analysis/dream/conftest.py
index 56aabf1f..b16da0a1 100644
--- a/tests/integration/scipp-analysis/dream/conftest.py
+++ b/tests/integration/scipp-analysis/dream/conftest.py
@@ -1,5 +1,6 @@
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
-# Copyright (c) 2026 DMSC
+
 """Shared fixtures for DREAM scipp-analysis integration tests.
 
 This module provides pytest fixtures for downloading and parsing
diff --git a/tests/integration/scipp-analysis/dream/test_analyze_reduced_data.py b/tests/integration/scipp-analysis/dream/test_analyze_reduced_data.py
index cde09c8a..23821ee2 100644
--- a/tests/integration/scipp-analysis/dream/test_analyze_reduced_data.py
+++ b/tests/integration/scipp-analysis/dream/test_analyze_reduced_data.py
@@ -1,5 +1,6 @@
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
-# Copyright (c) 2026 DMSC
+
 """Tests for analyzing reduced diffraction data using easydiffraction.
 
 These tests verify the complete workflow:
diff --git a/tests/integration/scipp-analysis/dream/test_package_import.py b/tests/integration/scipp-analysis/dream/test_package_import.py
index 7c10d02b..03125806 100644
--- a/tests/integration/scipp-analysis/dream/test_package_import.py
+++ b/tests/integration/scipp-analysis/dream/test_package_import.py
@@ -1,5 +1,6 @@
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
-# Copyright (c) 2026 DMSC
+
 """Tests for verifying package installation and version consistency.
 
 These tests check that easydiffraction and essdiffraction packages are
diff --git a/tests/integration/scipp-analysis/dream/test_read_reduced_data.py b/tests/integration/scipp-analysis/dream/test_read_reduced_data.py
index 616c9876..db589354 100644
--- a/tests/integration/scipp-analysis/dream/test_read_reduced_data.py
+++ b/tests/integration/scipp-analysis/dream/test_read_reduced_data.py
@@ -1,5 +1,6 @@
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
-# Copyright (c) 2026 DMSC
+
 """Tests for reading reduced data from CIF files.
 
 These tests verify that the CIF file can be fetched, read as text,
diff --git a/tests/integration/scipp-analysis/dream/test_validate_meta_data.py b/tests/integration/scipp-analysis/dream/test_validate_meta_data.py
index 7712dbc3..6f07845a 100644
--- a/tests/integration/scipp-analysis/dream/test_validate_meta_data.py
+++ b/tests/integration/scipp-analysis/dream/test_validate_meta_data.py
@@ -1,5 +1,6 @@
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
-# Copyright (c) 2026 DMSC
+
 """Tests for validating metadata structure in CIF files.
 
 These tests verify that the CIF file contains the expected data blocks,
diff --git a/tests/integration/scipp-analysis/dream/test_validate_physical_data.py b/tests/integration/scipp-analysis/dream/test_validate_physical_data.py
index f1be5eb3..a8e5d4fb 100644
--- a/tests/integration/scipp-analysis/dream/test_validate_physical_data.py
+++ b/tests/integration/scipp-analysis/dream/test_validate_physical_data.py
@@ -1,5 +1,6 @@
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
-# Copyright (c) 2026 DMSC
+
 """Tests for validating physical data values in CIF files.
 
 These tests verify that numerical data columns contain valid,
diff --git a/tests/unit/easydiffraction/analysis/calculators/test_base.py b/tests/unit/easydiffraction/analysis/calculators/test_base.py
index 6483af6e..5070b9a3 100644
--- a/tests/unit/easydiffraction/analysis/calculators/test_base.py
+++ b/tests/unit/easydiffraction/analysis/calculators/test_base.py
@@ -1,6 +1,7 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2025 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 
+
 def test_module_import():
     import easydiffraction.analysis.calculators.base as MUT
 
diff --git a/tests/unit/easydiffraction/analysis/calculators/test_crysfml.py b/tests/unit/easydiffraction/analysis/calculators/test_crysfml.py
index e35d1bd5..a6a1371c 100644
--- a/tests/unit/easydiffraction/analysis/calculators/test_crysfml.py
+++ b/tests/unit/easydiffraction/analysis/calculators/test_crysfml.py
@@ -1,4 +1,4 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2025 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 
 import pytest
diff --git a/tests/unit/easydiffraction/analysis/calculators/test_cryspy.py b/tests/unit/easydiffraction/analysis/calculators/test_cryspy.py
index bccd63ec..8593bfe0 100644
--- a/tests/unit/easydiffraction/analysis/calculators/test_cryspy.py
+++ b/tests/unit/easydiffraction/analysis/calculators/test_cryspy.py
@@ -1,6 +1,7 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2025 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 
+
 def test_module_import():
     import easydiffraction.analysis.calculators.cryspy as MUT
 
diff --git a/tests/unit/easydiffraction/analysis/calculators/test_factory.py b/tests/unit/easydiffraction/analysis/calculators/test_factory.py
index 7df08b97..681299fa 100644
--- a/tests/unit/easydiffraction/analysis/calculators/test_factory.py
+++ b/tests/unit/easydiffraction/analysis/calculators/test_factory.py
@@ -1,4 +1,4 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2025 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 
 import pytest
diff --git a/tests/unit/easydiffraction/analysis/calculators/test_pdffit.py b/tests/unit/easydiffraction/analysis/calculators/test_pdffit.py
index 268d0d84..9dce59f5 100644
--- a/tests/unit/easydiffraction/analysis/calculators/test_pdffit.py
+++ b/tests/unit/easydiffraction/analysis/calculators/test_pdffit.py
@@ -1,4 +1,4 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2025 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 
 import numpy as np
diff --git a/tests/unit/easydiffraction/analysis/categories/test_aliases.py b/tests/unit/easydiffraction/analysis/categories/test_aliases.py
index 4860961d..2545218a 100644
--- a/tests/unit/easydiffraction/analysis/categories/test_aliases.py
+++ b/tests/unit/easydiffraction/analysis/categories/test_aliases.py
@@ -1,4 +1,4 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2025 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 
 from easydiffraction.analysis.categories.aliases import Alias
@@ -7,8 +7,8 @@
 
 def test_alias_creation_and_collection():
     a = Alias()
-    a.label='x'
-    a.param_uid='p1'
+    a.label = 'x'
+    a.param_uid = 'p1'
     assert a.label.value == 'x'
     coll = Aliases()
     coll.create(label='x', param_uid='p1')
diff --git a/tests/unit/easydiffraction/analysis/categories/test_constraints.py b/tests/unit/easydiffraction/analysis/categories/test_constraints.py
index 7d4acb0a..443f9b1b 100644
--- a/tests/unit/easydiffraction/analysis/categories/test_constraints.py
+++ b/tests/unit/easydiffraction/analysis/categories/test_constraints.py
@@ -1,4 +1,4 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2025 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 
 from easydiffraction.analysis.categories.constraints import Constraint
@@ -7,8 +7,8 @@
 
 def test_constraint_creation_and_collection():
     c = Constraint()
-    c.lhs_alias='a'
-    c.rhs_expr='b + c'
+    c.lhs_alias = 'a'
+    c.rhs_expr = 'b + c'
     assert c.lhs_alias.value == 'a'
     coll = Constraints()
     coll.create(lhs_alias='a', rhs_expr='b + c')
diff --git a/tests/unit/easydiffraction/analysis/categories/test_joint_fit_experiments.py b/tests/unit/easydiffraction/analysis/categories/test_joint_fit_experiments.py
index c4194c35..51777f11 100644
--- a/tests/unit/easydiffraction/analysis/categories/test_joint_fit_experiments.py
+++ b/tests/unit/easydiffraction/analysis/categories/test_joint_fit_experiments.py
@@ -1,4 +1,4 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2025 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 
 from easydiffraction.analysis.categories.joint_fit_experiments import JointFitExperiment
@@ -7,8 +7,8 @@
 
 def test_joint_fit_experiment_and_collection():
     j = JointFitExperiment()
-    j.id='ex1'
-    j.weight=0.5
+    j.id = 'ex1'
+    j.weight = 0.5
     assert j.id.value == 'ex1'
     assert j.weight.value == 0.5
     coll = JointFitExperiments()
diff --git a/tests/unit/easydiffraction/analysis/fit_helpers/test_metrics.py b/tests/unit/easydiffraction/analysis/fit_helpers/test_metrics.py
index 7c8b75c9..2fc968f8 100644
--- a/tests/unit/easydiffraction/analysis/fit_helpers/test_metrics.py
+++ b/tests/unit/easydiffraction/analysis/fit_helpers/test_metrics.py
@@ -1,4 +1,4 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2025 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 
 import numpy as np
diff --git a/tests/unit/easydiffraction/analysis/fit_helpers/test_reporting.py b/tests/unit/easydiffraction/analysis/fit_helpers/test_reporting.py
index 458519ce..ee8014f2 100644
--- a/tests/unit/easydiffraction/analysis/fit_helpers/test_reporting.py
+++ b/tests/unit/easydiffraction/analysis/fit_helpers/test_reporting.py
@@ -1,6 +1,7 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2025 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 
+
 def test_module_import():
     import easydiffraction.analysis.fit_helpers.reporting as MUT
 
diff --git a/tests/unit/easydiffraction/analysis/fit_helpers/test_tracking.py b/tests/unit/easydiffraction/analysis/fit_helpers/test_tracking.py
index bf3873ab..561eb54c 100644
--- a/tests/unit/easydiffraction/analysis/fit_helpers/test_tracking.py
+++ b/tests/unit/easydiffraction/analysis/fit_helpers/test_tracking.py
@@ -1,4 +1,4 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2025 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 
 import numpy as np
diff --git a/tests/unit/easydiffraction/analysis/minimizers/test_base.py b/tests/unit/easydiffraction/analysis/minimizers/test_base.py
index 5d04a75a..501a2a98 100644
--- a/tests/unit/easydiffraction/analysis/minimizers/test_base.py
+++ b/tests/unit/easydiffraction/analysis/minimizers/test_base.py
@@ -1,4 +1,4 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2025 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 
 import numpy as np
diff --git a/tests/unit/easydiffraction/analysis/minimizers/test_dfols.py b/tests/unit/easydiffraction/analysis/minimizers/test_dfols.py
index 88e22dee..72d01949 100644
--- a/tests/unit/easydiffraction/analysis/minimizers/test_dfols.py
+++ b/tests/unit/easydiffraction/analysis/minimizers/test_dfols.py
@@ -1,4 +1,4 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2025 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 
 import numpy as np
diff --git a/tests/unit/easydiffraction/analysis/minimizers/test_factory.py b/tests/unit/easydiffraction/analysis/minimizers/test_factory.py
index 236d1656..961ef782 100644
--- a/tests/unit/easydiffraction/analysis/minimizers/test_factory.py
+++ b/tests/unit/easydiffraction/analysis/minimizers/test_factory.py
@@ -1,6 +1,7 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2025 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 
+
 def test_minimizer_factory_list_and_show(capsys):
     from easydiffraction.analysis.minimizers.factory import MinimizerFactory
 
diff --git a/tests/unit/easydiffraction/analysis/minimizers/test_lmfit.py b/tests/unit/easydiffraction/analysis/minimizers/test_lmfit.py
index 77b694ee..69005bd1 100644
--- a/tests/unit/easydiffraction/analysis/minimizers/test_lmfit.py
+++ b/tests/unit/easydiffraction/analysis/minimizers/test_lmfit.py
@@ -1,4 +1,4 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2025 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 
 import types
diff --git a/tests/unit/easydiffraction/analysis/test_analysis.py b/tests/unit/easydiffraction/analysis/test_analysis.py
index 56d493aa..19bc3c2a 100644
--- a/tests/unit/easydiffraction/analysis/test_analysis.py
+++ b/tests/unit/easydiffraction/analysis/test_analysis.py
@@ -1,6 +1,7 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2025 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 
+
 def test_module_import():
     import easydiffraction.analysis.analysis as MUT
 
@@ -36,7 +37,6 @@ def test_show_current_minimizer_prints(capsys):
     assert 'lmfit' in out
 
 
-
 def test_fit_mode_category_and_joint_fit_experiments(monkeypatch, capsys):
     from easydiffraction.analysis.analysis import Analysis
 
diff --git a/tests/unit/easydiffraction/analysis/test_analysis_access_params.py b/tests/unit/easydiffraction/analysis/test_analysis_access_params.py
index 96bf6ca1..bdd5ead0 100644
--- a/tests/unit/easydiffraction/analysis/test_analysis_access_params.py
+++ b/tests/unit/easydiffraction/analysis/test_analysis_access_params.py
@@ -1,12 +1,13 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2025 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 
+
 def test_how_to_access_parameters_prints_paths_and_uids(capsys, monkeypatch):
+    import easydiffraction.analysis.analysis as analysis_mod
     from easydiffraction.analysis.analysis import Analysis
-    from easydiffraction.core.variable import Parameter
     from easydiffraction.core.validation import AttributeSpec
+    from easydiffraction.core.variable import Parameter
     from easydiffraction.io.cif.handler import CifHandler
-    import easydiffraction.analysis.analysis as analysis_mod
 
     # Build two parameters with identity metadata set directly
     def make_param(db, cat, entry, name, val):
diff --git a/tests/unit/easydiffraction/analysis/test_analysis_show_empty.py b/tests/unit/easydiffraction/analysis/test_analysis_show_empty.py
index 921127ba..7f2895b4 100644
--- a/tests/unit/easydiffraction/analysis/test_analysis_show_empty.py
+++ b/tests/unit/easydiffraction/analysis/test_analysis_show_empty.py
@@ -1,6 +1,7 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2025 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 
+
 def test_show_params_empty_branches(capsys):
     from easydiffraction.analysis.analysis import Analysis
 
diff --git a/tests/unit/easydiffraction/analysis/test_fitting.py b/tests/unit/easydiffraction/analysis/test_fitting.py
index d3a1b1fb..2f703f77 100644
--- a/tests/unit/easydiffraction/analysis/test_fitting.py
+++ b/tests/unit/easydiffraction/analysis/test_fitting.py
@@ -1,6 +1,7 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2025 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 
+
 def test_module_import():
     import easydiffraction.analysis.fitting as MUT
 
diff --git a/tests/unit/easydiffraction/core/test_category.py b/tests/unit/easydiffraction/core/test_category.py
index c53fd12c..632d96f1 100644
--- a/tests/unit/easydiffraction/core/test_category.py
+++ b/tests/unit/easydiffraction/core/test_category.py
@@ -1,10 +1,10 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2025 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 
 from easydiffraction.core.category import CategoryCollection
 from easydiffraction.core.category import CategoryItem
-from easydiffraction.core.variable import StringDescriptor
 from easydiffraction.core.validation import AttributeSpec
+from easydiffraction.core.variable import StringDescriptor
 from easydiffraction.io.cif.handler import CifHandler
 
 
@@ -97,5 +97,3 @@ def test_category_collection_help(capsys):
     assert 'Items (2)' in out
     assert 'n1' in out
     assert 'n2' in out
-
-
diff --git a/tests/unit/easydiffraction/core/test_collection.py b/tests/unit/easydiffraction/core/test_collection.py
index 616b232f..817b76dd 100644
--- a/tests/unit/easydiffraction/core/test_collection.py
+++ b/tests/unit/easydiffraction/core/test_collection.py
@@ -1,6 +1,7 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2025 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 
+
 def test_collection_add_get_delete_and_names():
     from easydiffraction.core.collection import CollectionBase
     from easydiffraction.core.identity import Identity
@@ -55,11 +56,11 @@ def as_cif(self) -> str:
 
 
 def test_collection_remove():
+    import pytest
+
     from easydiffraction.core.collection import CollectionBase
     from easydiffraction.core.identity import Identity
 
-    import pytest
-
     class Item:
         def __init__(self, name):
             self._identity = Identity(owner=self, category_entry=lambda: name)
@@ -119,4 +120,3 @@ def as_cif(self) -> str:
     del c['beta']
     assert 'beta' not in c
     assert len(c) == 1
-
diff --git a/tests/unit/easydiffraction/core/test_datablock.py b/tests/unit/easydiffraction/core/test_datablock.py
index 6565bbaa..b41f68b7 100644
--- a/tests/unit/easydiffraction/core/test_datablock.py
+++ b/tests/unit/easydiffraction/core/test_datablock.py
@@ -1,12 +1,13 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2025 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 
+
 def test_datablock_collection_add_and_filters_with_real_parameters():
     from easydiffraction.core.category import CategoryItem
     from easydiffraction.core.datablock import DatablockCollection
     from easydiffraction.core.datablock import DatablockItem
-    from easydiffraction.core.variable import Parameter
     from easydiffraction.core.validation import AttributeSpec
+    from easydiffraction.core.variable import Parameter
     from easydiffraction.io.cif.handler import CifHandler
 
     class Cat(CategoryItem):
@@ -78,8 +79,8 @@ def cat(self):
 def test_datablock_item_help(capsys):
     from easydiffraction.core.category import CategoryItem
     from easydiffraction.core.datablock import DatablockItem
-    from easydiffraction.core.variable import Parameter
     from easydiffraction.core.validation import AttributeSpec
+    from easydiffraction.core.variable import Parameter
     from easydiffraction.io.cif.handler import CifHandler
 
     class Cat(CategoryItem):
@@ -133,4 +134,3 @@ def __init__(self, name):
     out = capsys.readouterr().out
     assert 'Items (1)' in out
     assert 'A' in out
-
diff --git a/tests/unit/easydiffraction/core/test_diagnostic.py b/tests/unit/easydiffraction/core/test_diagnostic.py
index 98e96320..cda7ce98 100644
--- a/tests/unit/easydiffraction/core/test_diagnostic.py
+++ b/tests/unit/easydiffraction/core/test_diagnostic.py
@@ -1,4 +1,4 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2025 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 
 import pytest
diff --git a/tests/unit/easydiffraction/core/test_factory.py b/tests/unit/easydiffraction/core/test_factory.py
index ee85b97c..78150ea5 100644
--- a/tests/unit/easydiffraction/core/test_factory.py
+++ b/tests/unit/easydiffraction/core/test_factory.py
@@ -1,5 +1,2 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2025 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
-
-# core/factory.py was removed — FactoryBase and _validate_args are no
-# longer part of the codebase.  This test file is intentionally empty.
diff --git a/tests/unit/easydiffraction/core/test_guard.py b/tests/unit/easydiffraction/core/test_guard.py
index 34407914..64d46680 100644
--- a/tests/unit/easydiffraction/core/test_guard.py
+++ b/tests/unit/easydiffraction/core/test_guard.py
@@ -1,4 +1,4 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2025 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 
 import pytest
@@ -99,5 +99,3 @@ def test_first_sentence_extracts_first_paragraph():
     assert GuardedBase._first_sentence('One liner.') == 'One liner.'
     assert GuardedBase._first_sentence('First.\n\nSecond.') == 'First.'
     assert GuardedBase._first_sentence('Line one\ncontinued.') == 'Line one continued.'
-
-
diff --git a/tests/unit/easydiffraction/core/test_identity.py b/tests/unit/easydiffraction/core/test_identity.py
index 584135d7..61da0723 100644
--- a/tests/unit/easydiffraction/core/test_identity.py
+++ b/tests/unit/easydiffraction/core/test_identity.py
@@ -1,6 +1,7 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2025 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 
+
 def test_identity_direct_and_parent_resolution():
     from easydiffraction.core.identity import Identity
 
diff --git a/tests/unit/easydiffraction/core/test_parameters.py b/tests/unit/easydiffraction/core/test_parameters.py
index 35c65558..4bf46f0d 100644
--- a/tests/unit/easydiffraction/core/test_parameters.py
+++ b/tests/unit/easydiffraction/core/test_parameters.py
@@ -1,4 +1,4 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2025 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 
 import numpy as np
@@ -13,9 +13,9 @@ def test_module_import():
 
 def test_string_descriptor_type_override_raises_type_error():
     # Creating a StringDescriptor with a NUMERIC spec should raise via Diagnostics
-    from easydiffraction.core.variable import StringDescriptor
     from easydiffraction.core.validation import AttributeSpec
     from easydiffraction.core.validation import DataTypes
+    from easydiffraction.core.variable import StringDescriptor
     from easydiffraction.io.cif.handler import CifHandler
 
     with pytest.raises(TypeError):
@@ -28,8 +28,8 @@ def test_string_descriptor_type_override_raises_type_error():
 
 
 def test_numeric_descriptor_str_includes_units():
-    from easydiffraction.core.variable import NumericDescriptor
     from easydiffraction.core.validation import AttributeSpec
+    from easydiffraction.core.variable import NumericDescriptor
     from easydiffraction.io.cif.handler import CifHandler
 
     d = NumericDescriptor(
@@ -43,8 +43,8 @@ def test_numeric_descriptor_str_includes_units():
 
 
 def test_parameter_string_repr_and_as_cif_and_flags():
-    from easydiffraction.core.variable import Parameter
     from easydiffraction.core.validation import AttributeSpec
+    from easydiffraction.core.variable import Parameter
     from easydiffraction.io.cif.handler import CifHandler
 
     p = Parameter(
@@ -69,8 +69,8 @@ def test_parameter_string_repr_and_as_cif_and_flags():
 
 
 def test_parameter_uncertainty_must_be_non_negative():
-    from easydiffraction.core.variable import Parameter
     from easydiffraction.core.validation import AttributeSpec
+    from easydiffraction.core.variable import Parameter
     from easydiffraction.io.cif.handler import CifHandler
 
     p = Parameter(
@@ -83,8 +83,8 @@ def test_parameter_uncertainty_must_be_non_negative():
 
 
 def test_parameter_fit_bounds_assign_and_read():
-    from easydiffraction.core.variable import Parameter
     from easydiffraction.core.validation import AttributeSpec
+    from easydiffraction.core.variable import Parameter
     from easydiffraction.io.cif.handler import CifHandler
 
     p = Parameter(
diff --git a/tests/unit/easydiffraction/core/test_singletons.py b/tests/unit/easydiffraction/core/test_singletons.py
index bd2c5aef..ba69f07a 100644
--- a/tests/unit/easydiffraction/core/test_singletons.py
+++ b/tests/unit/easydiffraction/core/test_singletons.py
@@ -1,4 +1,4 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2025 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 
 import pytest
diff --git a/tests/unit/easydiffraction/core/test_validation.py b/tests/unit/easydiffraction/core/test_validation.py
index 70a92bb5..3bbd0ac3 100644
--- a/tests/unit/easydiffraction/core/test_validation.py
+++ b/tests/unit/easydiffraction/core/test_validation.py
@@ -1,6 +1,7 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2025 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 
+
 def test_module_import():
     import easydiffraction.core.validation as MUT
 
diff --git a/tests/unit/easydiffraction/crystallography/test_crystallography.py b/tests/unit/easydiffraction/crystallography/test_crystallography.py
index 3c2bf7df..73e1a134 100644
--- a/tests/unit/easydiffraction/crystallography/test_crystallography.py
+++ b/tests/unit/easydiffraction/crystallography/test_crystallography.py
@@ -1,6 +1,7 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2025 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 
+
 def test_module_import():
     import easydiffraction.crystallography.crystallography as MUT
 
diff --git a/tests/unit/easydiffraction/crystallography/test_space_groups.py b/tests/unit/easydiffraction/crystallography/test_space_groups.py
index 5629f633..dd1482cd 100644
--- a/tests/unit/easydiffraction/crystallography/test_space_groups.py
+++ b/tests/unit/easydiffraction/crystallography/test_space_groups.py
@@ -1,6 +1,7 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2025 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 
+
 def test_module_import():
     import easydiffraction.crystallography.space_groups as MUT
 
diff --git a/tests/unit/easydiffraction/datablocks/experiment/categories/background/test_base.py b/tests/unit/easydiffraction/datablocks/experiment/categories/background/test_base.py
index 31c7fd0b..88049e83 100644
--- a/tests/unit/easydiffraction/datablocks/experiment/categories/background/test_base.py
+++ b/tests/unit/easydiffraction/datablocks/experiment/categories/background/test_base.py
@@ -1,4 +1,4 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 
 import numpy as np
@@ -7,9 +7,9 @@
 def test_background_base_minimal_impl_and_collection_cif():
     from easydiffraction.core.category import CategoryItem
     from easydiffraction.core.collection import CollectionBase
-    from easydiffraction.core.variable import Parameter
     from easydiffraction.core.validation import AttributeSpec
     from easydiffraction.core.validation import DataTypes
+    from easydiffraction.core.variable import Parameter
     from easydiffraction.datablocks.experiment.categories.background.base import BackgroundBase
     from easydiffraction.io.cif.handler import CifHandler
 
diff --git a/tests/unit/easydiffraction/datablocks/experiment/categories/background/test_chebyshev.py b/tests/unit/easydiffraction/datablocks/experiment/categories/background/test_chebyshev.py
index b59ea102..d10a3c40 100644
--- a/tests/unit/easydiffraction/datablocks/experiment/categories/background/test_chebyshev.py
+++ b/tests/unit/easydiffraction/datablocks/experiment/categories/background/test_chebyshev.py
@@ -1,4 +1,4 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 
 import numpy as np
diff --git a/tests/unit/easydiffraction/datablocks/experiment/categories/background/test_enums.py b/tests/unit/easydiffraction/datablocks/experiment/categories/background/test_enums.py
index 47e0f5f3..b37a22e6 100644
--- a/tests/unit/easydiffraction/datablocks/experiment/categories/background/test_enums.py
+++ b/tests/unit/easydiffraction/datablocks/experiment/categories/background/test_enums.py
@@ -1,14 +1,14 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 
 
 def test_background_type_info():
-    from easydiffraction.datablocks.experiment.categories.background.line_segment import (
-        LineSegmentBackground,
-    )
     from easydiffraction.datablocks.experiment.categories.background.chebyshev import (
         ChebyshevPolynomialBackground,
     )
+    from easydiffraction.datablocks.experiment.categories.background.line_segment import (
+        LineSegmentBackground,
+    )
 
     assert LineSegmentBackground.type_info.tag == 'line-segment'
     assert LineSegmentBackground.type_info.description == 'Linear interpolation between points'
diff --git a/tests/unit/easydiffraction/datablocks/experiment/categories/background/test_factory.py b/tests/unit/easydiffraction/datablocks/experiment/categories/background/test_factory.py
index 15c40a19..09679489 100644
--- a/tests/unit/easydiffraction/datablocks/experiment/categories/background/test_factory.py
+++ b/tests/unit/easydiffraction/datablocks/experiment/categories/background/test_factory.py
@@ -1,11 +1,13 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 
 import pytest
 
 
 def test_background_factory_default_and_errors():
-    from easydiffraction.datablocks.experiment.categories.background.factory import BackgroundFactory
+    from easydiffraction.datablocks.experiment.categories.background.factory import (
+        BackgroundFactory,
+    )
 
     # Default via default_tag()
     obj = BackgroundFactory.create(BackgroundFactory.default_tag())
diff --git a/tests/unit/easydiffraction/datablocks/experiment/categories/background/test_line_segment.py b/tests/unit/easydiffraction/datablocks/experiment/categories/background/test_line_segment.py
index e4e89605..ff231943 100644
--- a/tests/unit/easydiffraction/datablocks/experiment/categories/background/test_line_segment.py
+++ b/tests/unit/easydiffraction/datablocks/experiment/categories/background/test_line_segment.py
@@ -1,4 +1,4 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 
 import numpy as np
diff --git a/tests/unit/easydiffraction/datablocks/experiment/categories/data/test_bragg_pd.py b/tests/unit/easydiffraction/datablocks/experiment/categories/data/test_bragg_pd.py
index eaa48808..1a3f233c 100644
--- a/tests/unit/easydiffraction/datablocks/experiment/categories/data/test_bragg_pd.py
+++ b/tests/unit/easydiffraction/datablocks/experiment/categories/data/test_bragg_pd.py
@@ -1,4 +1,4 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 
 import numpy as np
@@ -142,4 +142,3 @@ def test_pd_data_intensity_meas_su_zero_replacement():
     assert su[0] == 1.0  # replaced
     assert su[1] == 1.0  # replaced
     assert su[2] == 5.0  # kept
-
diff --git a/tests/unit/easydiffraction/datablocks/experiment/categories/data/test_bragg_sc.py b/tests/unit/easydiffraction/datablocks/experiment/categories/data/test_bragg_sc.py
index 06dd634d..534fd192 100644
--- a/tests/unit/easydiffraction/datablocks/experiment/categories/data/test_bragg_sc.py
+++ b/tests/unit/easydiffraction/datablocks/experiment/categories/data/test_bragg_sc.py
@@ -1,4 +1,4 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 
 import numpy as np
@@ -90,4 +90,3 @@ def test_refln_data_type_info():
 
     assert ReflnData.type_info.tag == 'bragg-sc'
     assert ReflnData.type_info.description == 'Bragg single-crystal reflection data'
-
diff --git a/tests/unit/easydiffraction/datablocks/experiment/categories/data/test_factory.py b/tests/unit/easydiffraction/datablocks/experiment/categories/data/test_factory.py
index 18ecd5d0..6f52cdff 100644
--- a/tests/unit/easydiffraction/datablocks/experiment/categories/data/test_factory.py
+++ b/tests/unit/easydiffraction/datablocks/experiment/categories/data/test_factory.py
@@ -1,16 +1,15 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 
 import pytest
 
 
 def test_data_factory_default_and_errors():
-    from easydiffraction.datablocks.experiment.categories.data.factory import DataFactory
-
     # Ensure concrete classes are registered
     from easydiffraction.datablocks.experiment.categories.data import bragg_pd  # noqa: F401
     from easydiffraction.datablocks.experiment.categories.data import bragg_sc  # noqa: F401
     from easydiffraction.datablocks.experiment.categories.data import total_pd  # noqa: F401
+    from easydiffraction.datablocks.experiment.categories.data.factory import DataFactory
 
     # Explicit type by tag
     obj = DataFactory.create('bragg-pd')
@@ -32,15 +31,14 @@ def test_data_factory_default_and_errors():
 
 
 def test_data_factory_default_tag_resolution():
-    from easydiffraction.datablocks.experiment.categories.data.factory import DataFactory
-    from easydiffraction.datablocks.experiment.item.enums import BeamModeEnum
-    from easydiffraction.datablocks.experiment.item.enums import SampleFormEnum
-    from easydiffraction.datablocks.experiment.item.enums import ScatteringTypeEnum
-
     # Ensure concrete classes are registered
     from easydiffraction.datablocks.experiment.categories.data import bragg_pd  # noqa: F401
     from easydiffraction.datablocks.experiment.categories.data import bragg_sc  # noqa: F401
     from easydiffraction.datablocks.experiment.categories.data import total_pd  # noqa: F401
+    from easydiffraction.datablocks.experiment.categories.data.factory import DataFactory
+    from easydiffraction.datablocks.experiment.item.enums import BeamModeEnum
+    from easydiffraction.datablocks.experiment.item.enums import SampleFormEnum
+    from easydiffraction.datablocks.experiment.item.enums import ScatteringTypeEnum
 
     # Context-dependent default: Bragg powder CWL
     tag = DataFactory.default_tag(
@@ -74,16 +72,14 @@ def test_data_factory_default_tag_resolution():
 
 
 def test_data_factory_supported_tags():
-    from easydiffraction.datablocks.experiment.categories.data.factory import DataFactory
-
     # Ensure concrete classes are registered
     from easydiffraction.datablocks.experiment.categories.data import bragg_pd  # noqa: F401
     from easydiffraction.datablocks.experiment.categories.data import bragg_sc  # noqa: F401
     from easydiffraction.datablocks.experiment.categories.data import total_pd  # noqa: F401
+    from easydiffraction.datablocks.experiment.categories.data.factory import DataFactory
 
     tags = DataFactory.supported_tags()
     assert 'bragg-pd' in tags
     assert 'bragg-pd-tof' in tags
     assert 'bragg-sc' in tags
     assert 'total-pd' in tags
-
diff --git a/tests/unit/easydiffraction/datablocks/experiment/categories/data/test_total_pd.py b/tests/unit/easydiffraction/datablocks/experiment/categories/data/test_total_pd.py
index 90c85e3e..41e638e5 100644
--- a/tests/unit/easydiffraction/datablocks/experiment/categories/data/test_total_pd.py
+++ b/tests/unit/easydiffraction/datablocks/experiment/categories/data/test_total_pd.py
@@ -1,4 +1,4 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 
 import numpy as np
@@ -89,4 +89,3 @@ def test_total_data_type_info():
 
     assert TotalData.type_info.tag == 'total-pd'
     assert TotalData.type_info.description == 'Total scattering (PDF) data'
-
diff --git a/tests/unit/easydiffraction/datablocks/experiment/categories/instrument/test_base.py b/tests/unit/easydiffraction/datablocks/experiment/categories/instrument/test_base.py
index 70d36b8a..38bcb8c7 100644
--- a/tests/unit/easydiffraction/datablocks/experiment/categories/instrument/test_base.py
+++ b/tests/unit/easydiffraction/datablocks/experiment/categories/instrument/test_base.py
@@ -1,6 +1,7 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 
+
 def test_instrument_base_sets_category_code():
     from easydiffraction.datablocks.experiment.categories.instrument.base import InstrumentBase
 
diff --git a/tests/unit/easydiffraction/datablocks/experiment/categories/instrument/test_cwl.py b/tests/unit/easydiffraction/datablocks/experiment/categories/instrument/test_cwl.py
index 205abd50..0816f6e7 100644
--- a/tests/unit/easydiffraction/datablocks/experiment/categories/instrument/test_cwl.py
+++ b/tests/unit/easydiffraction/datablocks/experiment/categories/instrument/test_cwl.py
@@ -1,4 +1,4 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 
 from easydiffraction.datablocks.experiment.categories.instrument.cwl import CwlPdInstrument
diff --git a/tests/unit/easydiffraction/datablocks/experiment/categories/instrument/test_factory.py b/tests/unit/easydiffraction/datablocks/experiment/categories/instrument/test_factory.py
index f122f9be..04117aa9 100644
--- a/tests/unit/easydiffraction/datablocks/experiment/categories/instrument/test_factory.py
+++ b/tests/unit/easydiffraction/datablocks/experiment/categories/instrument/test_factory.py
@@ -1,4 +1,4 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 
 import pytest
@@ -6,7 +6,9 @@
 
 def test_instrument_factory_default_and_errors():
     try:
-        from easydiffraction.datablocks.experiment.categories.instrument.factory import InstrumentFactory
+        from easydiffraction.datablocks.experiment.categories.instrument.factory import (
+            InstrumentFactory,
+        )
         from easydiffraction.datablocks.experiment.item.enums import BeamModeEnum
         from easydiffraction.datablocks.experiment.item.enums import SampleFormEnum
     except ImportError as e:  # pragma: no cover - environment-specific circular import
diff --git a/tests/unit/easydiffraction/datablocks/experiment/categories/instrument/test_tof.py b/tests/unit/easydiffraction/datablocks/experiment/categories/instrument/test_tof.py
index 91c4f0d0..bfd6cc12 100644
--- a/tests/unit/easydiffraction/datablocks/experiment/categories/instrument/test_tof.py
+++ b/tests/unit/easydiffraction/datablocks/experiment/categories/instrument/test_tof.py
@@ -1,4 +1,4 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 
 import numpy as np
diff --git a/tests/unit/easydiffraction/datablocks/experiment/categories/peak/test_base.py b/tests/unit/easydiffraction/datablocks/experiment/categories/peak/test_base.py
index ad3708dc..229fc734 100644
--- a/tests/unit/easydiffraction/datablocks/experiment/categories/peak/test_base.py
+++ b/tests/unit/easydiffraction/datablocks/experiment/categories/peak/test_base.py
@@ -1,4 +1,4 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 
 from easydiffraction.datablocks.experiment.categories.peak.base import PeakBase
diff --git a/tests/unit/easydiffraction/datablocks/experiment/categories/peak/test_cwl.py b/tests/unit/easydiffraction/datablocks/experiment/categories/peak/test_cwl.py
index f4505287..d941afe9 100644
--- a/tests/unit/easydiffraction/datablocks/experiment/categories/peak/test_cwl.py
+++ b/tests/unit/easydiffraction/datablocks/experiment/categories/peak/test_cwl.py
@@ -1,6 +1,7 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 
+
 def test_cwl_peak_classes_expose_expected_parameters_and_category():
     from easydiffraction.datablocks.experiment.categories.peak.cwl import CwlPseudoVoigt
     from easydiffraction.datablocks.experiment.categories.peak.cwl import CwlSplitPseudoVoigt
diff --git a/tests/unit/easydiffraction/datablocks/experiment/categories/peak/test_cwl_mixins.py b/tests/unit/easydiffraction/datablocks/experiment/categories/peak/test_cwl_mixins.py
index 3bdc4466..19026f50 100644
--- a/tests/unit/easydiffraction/datablocks/experiment/categories/peak/test_cwl_mixins.py
+++ b/tests/unit/easydiffraction/datablocks/experiment/categories/peak/test_cwl_mixins.py
@@ -1,4 +1,4 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 
 from easydiffraction.datablocks.experiment.categories.peak.cwl import CwlPseudoVoigt
diff --git a/tests/unit/easydiffraction/datablocks/experiment/categories/peak/test_factory.py b/tests/unit/easydiffraction/datablocks/experiment/categories/peak/test_factory.py
index 6ff155ac..4b0ccd35 100644
--- a/tests/unit/easydiffraction/datablocks/experiment/categories/peak/test_factory.py
+++ b/tests/unit/easydiffraction/datablocks/experiment/categories/peak/test_factory.py
@@ -1,4 +1,4 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 
 import pytest
diff --git a/tests/unit/easydiffraction/datablocks/experiment/categories/peak/test_tof.py b/tests/unit/easydiffraction/datablocks/experiment/categories/peak/test_tof.py
index fde6d062..78e25d52 100644
--- a/tests/unit/easydiffraction/datablocks/experiment/categories/peak/test_tof.py
+++ b/tests/unit/easydiffraction/datablocks/experiment/categories/peak/test_tof.py
@@ -1,4 +1,4 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 
 from easydiffraction.datablocks.experiment.categories.peak.tof import TofPseudoVoigt
diff --git a/tests/unit/easydiffraction/datablocks/experiment/categories/peak/test_tof_mixins.py b/tests/unit/easydiffraction/datablocks/experiment/categories/peak/test_tof_mixins.py
index ae39c99c..c2f114a0 100644
--- a/tests/unit/easydiffraction/datablocks/experiment/categories/peak/test_tof_mixins.py
+++ b/tests/unit/easydiffraction/datablocks/experiment/categories/peak/test_tof_mixins.py
@@ -1,4 +1,4 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 
 import numpy as np
@@ -6,10 +6,16 @@
 
 def test_tof_broadening_and_asymmetry_mixins():
     from easydiffraction.datablocks.experiment.categories.peak.base import PeakBase
-    from easydiffraction.datablocks.experiment.categories.peak.tof_mixins import IkedaCarpenterAsymmetryMixin
+    from easydiffraction.datablocks.experiment.categories.peak.tof_mixins import (
+        IkedaCarpenterAsymmetryMixin,
+    )
     from easydiffraction.datablocks.experiment.categories.peak.tof_mixins import TofBroadeningMixin
 
-    class TofPeak(PeakBase, TofBroadeningMixin, IkedaCarpenterAsymmetryMixin,):
+    class TofPeak(
+        PeakBase,
+        TofBroadeningMixin,
+        IkedaCarpenterAsymmetryMixin,
+    ):
         def __init__(self):
             super().__init__()
 
diff --git a/tests/unit/easydiffraction/datablocks/experiment/categories/peak/test_total.py b/tests/unit/easydiffraction/datablocks/experiment/categories/peak/test_total.py
index c49d1cf7..46a6497b 100644
--- a/tests/unit/easydiffraction/datablocks/experiment/categories/peak/test_total.py
+++ b/tests/unit/easydiffraction/datablocks/experiment/categories/peak/test_total.py
@@ -1,4 +1,4 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 
 import numpy as np
diff --git a/tests/unit/easydiffraction/datablocks/experiment/categories/peak/test_total_mixins.py b/tests/unit/easydiffraction/datablocks/experiment/categories/peak/test_total_mixins.py
index 0979dcb9..c3534847 100644
--- a/tests/unit/easydiffraction/datablocks/experiment/categories/peak/test_total_mixins.py
+++ b/tests/unit/easydiffraction/datablocks/experiment/categories/peak/test_total_mixins.py
@@ -1,4 +1,4 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 
 from easydiffraction.datablocks.experiment.categories.peak.total import TotalGaussianDampedSinc
diff --git a/tests/unit/easydiffraction/datablocks/experiment/categories/test_excluded_regions.py b/tests/unit/easydiffraction/datablocks/experiment/categories/test_excluded_regions.py
index 8026740b..8f34b8de 100644
--- a/tests/unit/easydiffraction/datablocks/experiment/categories/test_excluded_regions.py
+++ b/tests/unit/easydiffraction/datablocks/experiment/categories/test_excluded_regions.py
@@ -1,4 +1,4 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 
 import numpy as np
@@ -23,7 +23,7 @@ def test_excluded_regions_add_updates_datastore_and_cif():
         meas=full_meas.copy(),
         meas_su=full_meas_su.copy(),
     )
-    
+
     def set_calc_status(status):
         # _set_calc_status sets excluded to the inverse
         ds.excluded = ~status
@@ -31,7 +31,7 @@ def set_calc_status(status):
         ds.x = ds.full_x[status]
         ds.meas = ds.full_meas[status]
         ds.meas_su = ds.full_meas_su[status]
-    
+
     ds._set_calc_status = set_calc_status
 
     coll = ExcludedRegions()
diff --git a/tests/unit/easydiffraction/datablocks/experiment/categories/test_experiment_type.py b/tests/unit/easydiffraction/datablocks/experiment/categories/test_experiment_type.py
index 169510ab..9190071e 100644
--- a/tests/unit/easydiffraction/datablocks/experiment/categories/test_experiment_type.py
+++ b/tests/unit/easydiffraction/datablocks/experiment/categories/test_experiment_type.py
@@ -1,6 +1,7 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 
+
 def test_module_import():
     import easydiffraction.datablocks.experiment.categories.experiment_type as MUT
 
diff --git a/tests/unit/easydiffraction/datablocks/experiment/categories/test_extinction.py b/tests/unit/easydiffraction/datablocks/experiment/categories/test_extinction.py
index 5287b488..dcee6f6e 100644
--- a/tests/unit/easydiffraction/datablocks/experiment/categories/test_extinction.py
+++ b/tests/unit/easydiffraction/datablocks/experiment/categories/test_extinction.py
@@ -1,4 +1,4 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 
 
@@ -74,5 +74,3 @@ def test_extinction_factory_default_tag():
     )
 
     assert ExtinctionFactory.default_tag() == 'shelx'
-
-
diff --git a/tests/unit/easydiffraction/datablocks/experiment/categories/test_linked_crystal.py b/tests/unit/easydiffraction/datablocks/experiment/categories/test_linked_crystal.py
index 06035598..69f96e7b 100644
--- a/tests/unit/easydiffraction/datablocks/experiment/categories/test_linked_crystal.py
+++ b/tests/unit/easydiffraction/datablocks/experiment/categories/test_linked_crystal.py
@@ -1,4 +1,4 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 
 
@@ -86,5 +86,3 @@ def test_linked_crystal_factory_default_tag():
     )
 
     assert LinkedCrystalFactory.default_tag() == 'default'
-
-
diff --git a/tests/unit/easydiffraction/datablocks/experiment/categories/test_linked_phases.py b/tests/unit/easydiffraction/datablocks/experiment/categories/test_linked_phases.py
index 263586f8..3b4b9fa7 100644
--- a/tests/unit/easydiffraction/datablocks/experiment/categories/test_linked_phases.py
+++ b/tests/unit/easydiffraction/datablocks/experiment/categories/test_linked_phases.py
@@ -1,6 +1,7 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 
+
 def test_linked_phases_add_and_cif_headers():
     from easydiffraction.datablocks.experiment.categories.linked_phases import LinkedPhase
     from easydiffraction.datablocks.experiment.categories.linked_phases import LinkedPhases
diff --git a/tests/unit/easydiffraction/datablocks/experiment/item/test_base.py b/tests/unit/easydiffraction/datablocks/experiment/item/test_base.py
index 6a6766ed..c2a0ab92 100644
--- a/tests/unit/easydiffraction/datablocks/experiment/item/test_base.py
+++ b/tests/unit/easydiffraction/datablocks/experiment/item/test_base.py
@@ -1,6 +1,7 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 
+
 def test_module_import():
     import easydiffraction.datablocks.experiment.item.base as MUT
 
diff --git a/tests/unit/easydiffraction/datablocks/experiment/item/test_bragg_pd.py b/tests/unit/easydiffraction/datablocks/experiment/item/test_bragg_pd.py
index 8b164ed0..89c763dc 100644
--- a/tests/unit/easydiffraction/datablocks/experiment/item/test_bragg_pd.py
+++ b/tests/unit/easydiffraction/datablocks/experiment/item/test_bragg_pd.py
@@ -1,4 +1,4 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 
 import numpy as np
@@ -22,8 +22,6 @@ def _mk_type_powder_cwl_bragg():
     return et
 
 
-
-
 def test_background_defaults_and_change():
     expt = BraggPdExperiment(name='e1', type=_mk_type_powder_cwl_bragg())
     # default background type
diff --git a/tests/unit/easydiffraction/datablocks/experiment/item/test_bragg_sc.py b/tests/unit/easydiffraction/datablocks/experiment/item/test_bragg_sc.py
index c01a5ee2..a69dd1bd 100644
--- a/tests/unit/easydiffraction/datablocks/experiment/item/test_bragg_sc.py
+++ b/tests/unit/easydiffraction/datablocks/experiment/item/test_bragg_sc.py
@@ -1,4 +1,4 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 
 import pytest
@@ -21,7 +21,6 @@ def _mk_type_sc_bragg():
     return et
 
 
-
 class _ConcreteCwlSc(CwlScExperiment):
     def _load_ascii_data_to_experiment(self, data_path: str) -> None:
         # Not used in this test
diff --git a/tests/unit/easydiffraction/datablocks/experiment/item/test_enums.py b/tests/unit/easydiffraction/datablocks/experiment/item/test_enums.py
index dff44c0f..983f991b 100644
--- a/tests/unit/easydiffraction/datablocks/experiment/item/test_enums.py
+++ b/tests/unit/easydiffraction/datablocks/experiment/item/test_enums.py
@@ -1,6 +1,7 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 
+
 def test_module_import():
     import easydiffraction.datablocks.experiment.item.enums as MUT
 
diff --git a/tests/unit/easydiffraction/datablocks/experiment/item/test_factory.py b/tests/unit/easydiffraction/datablocks/experiment/item/test_factory.py
index 8dac91b6..c185ed30 100644
--- a/tests/unit/easydiffraction/datablocks/experiment/item/test_factory.py
+++ b/tests/unit/easydiffraction/datablocks/experiment/item/test_factory.py
@@ -1,6 +1,7 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 
+
 def test_module_import():
     import easydiffraction.datablocks.experiment.item.factory as MUT
 
@@ -25,4 +26,3 @@ def test_experiment_factory_from_scratch():
     )
     # Instance should be created (BraggPdExperiment)
     assert hasattr(ex, 'type') and ex.type.sample_form.value == SampleFormEnum.POWDER.value
-
diff --git a/tests/unit/easydiffraction/datablocks/experiment/item/test_total_pd.py b/tests/unit/easydiffraction/datablocks/experiment/item/test_total_pd.py
index 78d40afc..d021dc34 100644
--- a/tests/unit/easydiffraction/datablocks/experiment/item/test_total_pd.py
+++ b/tests/unit/easydiffraction/datablocks/experiment/item/test_total_pd.py
@@ -1,4 +1,4 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 
 import numpy as np
diff --git a/tests/unit/easydiffraction/datablocks/experiment/test_collection.py b/tests/unit/easydiffraction/datablocks/experiment/test_collection.py
index 5165f141..bcb9f822 100644
--- a/tests/unit/easydiffraction/datablocks/experiment/test_collection.py
+++ b/tests/unit/easydiffraction/datablocks/experiment/test_collection.py
@@ -1,6 +1,7 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 
+
 def test_module_import():
     import easydiffraction.datablocks.experiment.collection as MUT
 
@@ -10,8 +11,8 @@ def test_module_import():
 
 
 def test_experiments_show_and_remove(monkeypatch, capsys):
-    from easydiffraction.datablocks.experiment.item.base import ExperimentBase
     from easydiffraction.datablocks.experiment.collection import Experiments
+    from easydiffraction.datablocks.experiment.item.base import ExperimentBase
 
     class DummyType:
         def __init__(self):
diff --git a/tests/unit/easydiffraction/datablocks/structure/categories/test_space_group.py b/tests/unit/easydiffraction/datablocks/structure/categories/test_space_group.py
index 89786b9e..4025bd83 100644
--- a/tests/unit/easydiffraction/datablocks/structure/categories/test_space_group.py
+++ b/tests/unit/easydiffraction/datablocks/structure/categories/test_space_group.py
@@ -1,4 +1,4 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 
 from easydiffraction.datablocks.structure.categories.space_group import SpaceGroup
diff --git a/tests/unit/easydiffraction/datablocks/structure/item/test_base.py b/tests/unit/easydiffraction/datablocks/structure/item/test_base.py
index 33bb878b..154d0405 100644
--- a/tests/unit/easydiffraction/datablocks/structure/item/test_base.py
+++ b/tests/unit/easydiffraction/datablocks/structure/item/test_base.py
@@ -1,4 +1,4 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 
 from easydiffraction.datablocks.structure.item.base import Structure
diff --git a/tests/unit/easydiffraction/datablocks/structure/item/test_factory.py b/tests/unit/easydiffraction/datablocks/structure/item/test_factory.py
index d1b50776..148e010a 100644
--- a/tests/unit/easydiffraction/datablocks/structure/item/test_factory.py
+++ b/tests/unit/easydiffraction/datablocks/structure/item/test_factory.py
@@ -1,4 +1,4 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 
 from easydiffraction.datablocks.structure.item.factory import StructureFactory
diff --git a/tests/unit/easydiffraction/datablocks/structure/test_collection.py b/tests/unit/easydiffraction/datablocks/structure/test_collection.py
index 9955a1e3..4e798e20 100644
--- a/tests/unit/easydiffraction/datablocks/structure/test_collection.py
+++ b/tests/unit/easydiffraction/datablocks/structure/test_collection.py
@@ -1,6 +1,2 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
-
-import pytest
-
-from easydiffraction.datablocks.structure.collection import Structures
diff --git a/tests/unit/easydiffraction/display/plotters/test_ascii.py b/tests/unit/easydiffraction/display/plotters/test_ascii.py
index 616bc60d..e0c04f8b 100644
--- a/tests/unit/easydiffraction/display/plotters/test_ascii.py
+++ b/tests/unit/easydiffraction/display/plotters/test_ascii.py
@@ -1,4 +1,4 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 
 import numpy as np
diff --git a/tests/unit/easydiffraction/display/plotters/test_base.py b/tests/unit/easydiffraction/display/plotters/test_base.py
index d1c2d561..b1029d2c 100644
--- a/tests/unit/easydiffraction/display/plotters/test_base.py
+++ b/tests/unit/easydiffraction/display/plotters/test_base.py
@@ -1,9 +1,8 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2025 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 
-import importlib
-import types
 import sys
+import types
 
 
 def test_module_import():
@@ -36,10 +35,34 @@ def test_default_axes_labels_keys_present():
     from easydiffraction.datablocks.experiment.item.enums import ScatteringTypeEnum
 
     # Powder Bragg
-    assert (SampleFormEnum.POWDER, ScatteringTypeEnum.BRAGG, pb.XAxisType.TWO_THETA) in pb.DEFAULT_AXES_LABELS
-    assert (SampleFormEnum.POWDER, ScatteringTypeEnum.BRAGG, pb.XAxisType.TIME_OF_FLIGHT) in pb.DEFAULT_AXES_LABELS
-    assert (SampleFormEnum.POWDER, ScatteringTypeEnum.BRAGG, pb.XAxisType.D_SPACING) in pb.DEFAULT_AXES_LABELS
+    assert (
+        SampleFormEnum.POWDER,
+        ScatteringTypeEnum.BRAGG,
+        pb.XAxisType.TWO_THETA,
+    ) in pb.DEFAULT_AXES_LABELS
+    assert (
+        SampleFormEnum.POWDER,
+        ScatteringTypeEnum.BRAGG,
+        pb.XAxisType.TIME_OF_FLIGHT,
+    ) in pb.DEFAULT_AXES_LABELS
+    assert (
+        SampleFormEnum.POWDER,
+        ScatteringTypeEnum.BRAGG,
+        pb.XAxisType.D_SPACING,
+    ) in pb.DEFAULT_AXES_LABELS
     # Single crystal Bragg
-    assert (SampleFormEnum.SINGLE_CRYSTAL, ScatteringTypeEnum.BRAGG, pb.XAxisType.INTENSITY_CALC) in pb.DEFAULT_AXES_LABELS
-    assert (SampleFormEnum.SINGLE_CRYSTAL, ScatteringTypeEnum.BRAGG, pb.XAxisType.D_SPACING) in pb.DEFAULT_AXES_LABELS
-    assert (SampleFormEnum.SINGLE_CRYSTAL, ScatteringTypeEnum.BRAGG, pb.XAxisType.SIN_THETA_OVER_LAMBDA) in pb.DEFAULT_AXES_LABELS
+    assert (
+        SampleFormEnum.SINGLE_CRYSTAL,
+        ScatteringTypeEnum.BRAGG,
+        pb.XAxisType.INTENSITY_CALC,
+    ) in pb.DEFAULT_AXES_LABELS
+    assert (
+        SampleFormEnum.SINGLE_CRYSTAL,
+        ScatteringTypeEnum.BRAGG,
+        pb.XAxisType.D_SPACING,
+    ) in pb.DEFAULT_AXES_LABELS
+    assert (
+        SampleFormEnum.SINGLE_CRYSTAL,
+        ScatteringTypeEnum.BRAGG,
+        pb.XAxisType.SIN_THETA_OVER_LAMBDA,
+    ) in pb.DEFAULT_AXES_LABELS
diff --git a/tests/unit/easydiffraction/display/plotters/test_plotly.py b/tests/unit/easydiffraction/display/plotters/test_plotly.py
index 06539f2b..5a1549f0 100644
--- a/tests/unit/easydiffraction/display/plotters/test_plotly.py
+++ b/tests/unit/easydiffraction/display/plotters/test_plotly.py
@@ -1,6 +1,7 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 
+
 def test_module_import():
     import easydiffraction.display.plotters.plotly as MUT
 
diff --git a/tests/unit/easydiffraction/display/test_plotting.py b/tests/unit/easydiffraction/display/test_plotting.py
index 15caf344..be5b4239 100644
--- a/tests/unit/easydiffraction/display/test_plotting.py
+++ b/tests/unit/easydiffraction/display/test_plotting.py
@@ -1,6 +1,7 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 
+
 def test_module_import():
     import easydiffraction.display.plotting as MUT
 
@@ -59,7 +60,9 @@ def test_plotter_error_paths_and_filtering(capsys):
     from easydiffraction.display.plotting import Plotter
 
     class Ptn:
-        def __init__(self, two_theta=None, intensity_meas=None, intensity_calc=None, d_spacing=None):
+        def __init__(
+            self, two_theta=None, intensity_meas=None, intensity_calc=None, d_spacing=None
+        ):
             self.two_theta = two_theta
             self.intensity_meas = intensity_meas
             self.intensity_calc = intensity_calc
@@ -90,13 +93,19 @@ def __init__(self):
     out = capsys.readouterr().out
     assert 'No calculated data available for experiment E' in out
 
-    p.plot_meas_vs_calc(Ptn(two_theta=None, intensity_meas=None, intensity_calc=None), 'E', ExptType())
+    p.plot_meas_vs_calc(
+        Ptn(two_theta=None, intensity_meas=None, intensity_calc=None), 'E', ExptType()
+    )
     out = capsys.readouterr().out
     assert 'No measured data available for experiment E' in out
-    p.plot_meas_vs_calc(Ptn(two_theta=[1], intensity_meas=None, intensity_calc=[1]), 'E', ExptType())
+    p.plot_meas_vs_calc(
+        Ptn(two_theta=[1], intensity_meas=None, intensity_calc=[1]), 'E', ExptType()
+    )
     out = capsys.readouterr().out
     assert 'No measured data available for experiment E' in out
-    p.plot_meas_vs_calc(Ptn(two_theta=[1], intensity_meas=[1], intensity_calc=None), 'E', ExptType())
+    p.plot_meas_vs_calc(
+        Ptn(two_theta=[1], intensity_meas=[1], intensity_calc=None), 'E', ExptType()
+    )
     out = capsys.readouterr().out
     assert 'No calculated data available for experiment E' in out
 
diff --git a/tests/unit/easydiffraction/io/cif/test_handler.py b/tests/unit/easydiffraction/io/cif/test_handler.py
index ea31b833..a9c1be85 100644
--- a/tests/unit/easydiffraction/io/cif/test_handler.py
+++ b/tests/unit/easydiffraction/io/cif/test_handler.py
@@ -1,6 +1,7 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2025 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 
+
 def test_cif_handler_names_and_uid():
     import easydiffraction.io.cif.handler as H
 
diff --git a/tests/unit/easydiffraction/io/cif/test_serialize.py b/tests/unit/easydiffraction/io/cif/test_serialize.py
index 48f044a1..6b92a0e4 100644
--- a/tests/unit/easydiffraction/io/cif/test_serialize.py
+++ b/tests/unit/easydiffraction/io/cif/test_serialize.py
@@ -1,6 +1,7 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2025 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 
+
 def test_module_import():
     import easydiffraction.io.cif.serialize as MUT
 
diff --git a/tests/unit/easydiffraction/io/cif/test_serialize_more.py b/tests/unit/easydiffraction/io/cif/test_serialize_more.py
index 54f345ee..fc8ef714 100644
--- a/tests/unit/easydiffraction/io/cif/test_serialize_more.py
+++ b/tests/unit/easydiffraction/io/cif/test_serialize_more.py
@@ -1,9 +1,6 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2025 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 
-import numpy as np
-import pytest
-
 
 def test_datablock_item_to_cif_includes_item_and_collection():
     import easydiffraction.io.cif.serialize as MUT
diff --git a/tests/unit/easydiffraction/project/test_project.py b/tests/unit/easydiffraction/project/test_project.py
index 1a949fc5..c6a64055 100644
--- a/tests/unit/easydiffraction/project/test_project.py
+++ b/tests/unit/easydiffraction/project/test_project.py
@@ -1,6 +1,7 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2025 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 
+
 def test_module_import():
     import easydiffraction.project.project as MUT
 
@@ -19,4 +20,3 @@ def test_project_help(capsys):
     assert 'experiments' in out
     assert 'analysis' in out
     assert 'summary' in out
-
diff --git a/tests/unit/easydiffraction/project/test_project_info.py b/tests/unit/easydiffraction/project/test_project_info.py
index ef8b061f..8c3455ab 100644
--- a/tests/unit/easydiffraction/project/test_project_info.py
+++ b/tests/unit/easydiffraction/project/test_project_info.py
@@ -1,6 +1,7 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2025 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 
+
 def test_module_import():
     import easydiffraction.project.project_info as MUT
 
diff --git a/tests/unit/easydiffraction/project/test_project_load_and_summary_wrap.py b/tests/unit/easydiffraction/project/test_project_load_and_summary_wrap.py
index 5cb103b8..cdeafd35 100644
--- a/tests/unit/easydiffraction/project/test_project_load_and_summary_wrap.py
+++ b/tests/unit/easydiffraction/project/test_project_load_and_summary_wrap.py
@@ -1,6 +1,7 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2025 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 
+
 def test_project_load_prints_and_sets_path(tmp_path, capsys):
     import pytest
 
diff --git a/tests/unit/easydiffraction/project/test_project_save.py b/tests/unit/easydiffraction/project/test_project_save.py
index eb662dfc..421e8928 100644
--- a/tests/unit/easydiffraction/project/test_project_save.py
+++ b/tests/unit/easydiffraction/project/test_project_save.py
@@ -1,6 +1,7 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2025 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 
+
 def test_project_save_uses_cwd_when_no_explicit_path(monkeypatch, tmp_path, capsys):
     # Default ProjectInfo.path is cwd; ensure save writes into a temp cwd, not repo root
     from easydiffraction.project.project import Project
diff --git a/tests/unit/easydiffraction/summary/test_summary.py b/tests/unit/easydiffraction/summary/test_summary.py
index 29da4e28..b57b5598 100644
--- a/tests/unit/easydiffraction/summary/test_summary.py
+++ b/tests/unit/easydiffraction/summary/test_summary.py
@@ -1,6 +1,7 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2025 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 
+
 def test_summary_as_cif_returns_placeholder_string():
     from easydiffraction.summary.summary import Summary
 
@@ -46,11 +47,6 @@ class R:
     assert 'FITTING' in out
 
 
-
-
-
-
-
 def test_module_import():
     import easydiffraction.summary.summary as MUT
 
diff --git a/tests/unit/easydiffraction/summary/test_summary_details.py b/tests/unit/easydiffraction/summary/test_summary_details.py
index 0e9fcf04..d0e0c97b 100644
--- a/tests/unit/easydiffraction/summary/test_summary_details.py
+++ b/tests/unit/easydiffraction/summary/test_summary_details.py
@@ -1,6 +1,7 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2025 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 
+
 def test_summary_crystallographic_and_experimental_sections(capsys):
     from easydiffraction.summary.summary import Summary
 
diff --git a/tests/unit/easydiffraction/test___init__.py b/tests/unit/easydiffraction/test___init__.py
index 5eb8c38f..75f273e1 100644
--- a/tests/unit/easydiffraction/test___init__.py
+++ b/tests/unit/easydiffraction/test___init__.py
@@ -1,7 +1,6 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2025 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 
-# Focused tests for package __init__: lazy attributes and error path
 import importlib
 from pathlib import Path
 
diff --git a/tests/unit/easydiffraction/test___main__.py b/tests/unit/easydiffraction/test___main__.py
index 885f73ef..76ba7cec 100644
--- a/tests/unit/easydiffraction/test___main__.py
+++ b/tests/unit/easydiffraction/test___main__.py
@@ -1,4 +1,4 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2025 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 
 from typer.testing import CliRunner
diff --git a/tests/unit/easydiffraction/utils/test_logging.py b/tests/unit/easydiffraction/utils/test_logging.py
index 8503e178..6dd520c2 100644
--- a/tests/unit/easydiffraction/utils/test_logging.py
+++ b/tests/unit/easydiffraction/utils/test_logging.py
@@ -1,6 +1,7 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2025 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 
+
 def test_module_import():
     import easydiffraction.utils.logging as MUT
 
diff --git a/tests/unit/easydiffraction/utils/test_theme_detect.py b/tests/unit/easydiffraction/utils/test_theme_detect.py
index e9899fb9..c3277a0a 100644
--- a/tests/unit/easydiffraction/utils/test_theme_detect.py
+++ b/tests/unit/easydiffraction/utils/test_theme_detect.py
@@ -1,4 +1,4 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 
 """Unit tests for theme detection module."""
@@ -23,12 +23,7 @@ def test_dark_theme_detection(self, tmp_path: Path) -> None:
         )
 
         settings_dir = (
-            tmp_path
-            / '.jupyter'
-            / 'lab'
-            / 'user-settings'
-            / '@jupyterlab'
-            / 'apputils-extension'
+            tmp_path / '.jupyter' / 'lab' / 'user-settings' / '@jupyterlab' / 'apputils-extension'
         )
         settings_dir.mkdir(parents=True)
 
@@ -45,12 +40,7 @@ def test_light_theme_detection(self, tmp_path: Path) -> None:
         )
 
         settings_dir = (
-            tmp_path
-            / '.jupyter'
-            / 'lab'
-            / 'user-settings'
-            / '@jupyterlab'
-            / 'apputils-extension'
+            tmp_path / '.jupyter' / 'lab' / 'user-settings' / '@jupyterlab' / 'apputils-extension'
         )
         settings_dir.mkdir(parents=True)
 
@@ -76,12 +66,7 @@ def test_comments_in_settings(self, tmp_path: Path) -> None:
         )
 
         settings_dir = (
-            tmp_path
-            / '.jupyter'
-            / 'lab'
-            / 'user-settings'
-            / '@jupyterlab'
-            / 'apputils-extension'
+            tmp_path / '.jupyter' / 'lab' / 'user-settings' / '@jupyterlab' / 'apputils-extension'
         )
         settings_dir.mkdir(parents=True)
 
@@ -119,9 +104,7 @@ def test_vscode_dark_theme(self, tmp_path: Path) -> None:
         vscode_dir.mkdir()
 
         settings_file = vscode_dir / 'settings.json'
-        settings_file.write_text(
-            json.dumps({'workbench.colorTheme': 'One Dark Pro'})
-        )
+        settings_file.write_text(json.dumps({'workbench.colorTheme': 'One Dark Pro'}))
 
         with mock.patch.dict(os.environ, {'VSCODE_PID': '12345'}):
             with mock.patch.object(Path, 'cwd', return_value=tmp_path):
@@ -137,9 +120,7 @@ def test_vscode_light_theme(self, tmp_path: Path) -> None:
         vscode_dir.mkdir()
 
         settings_file = vscode_dir / 'settings.json'
-        settings_file.write_text(
-            json.dumps({'workbench.colorTheme': 'Light+ (default light)'})
-        )
+        settings_file.write_text(json.dumps({'workbench.colorTheme': 'Light+ (default light)'}))
 
         with mock.patch.dict(os.environ, {'VSCODE_PID': '12345'}):
             with mock.patch.object(Path, 'cwd', return_value=tmp_path):
@@ -160,9 +141,7 @@ def test_vscode_nls_config_dark(self) -> None:
 class TestCheckSystemPreferences:
     """Tests for _check_system_preferences function."""
 
-    @pytest.mark.skipif(
-        not os.sys.platform.startswith('darwin'), reason='macOS only test'
-    )
+    @pytest.mark.skipif(not os.sys.platform.startswith('darwin'), reason='macOS only test')
     def test_macos_dark_mode(self) -> None:
         """Test macOS dark mode detection."""
         from easydiffraction.utils._vendored.jupyter_dark_detect.detector import (
@@ -174,9 +153,7 @@ def test_macos_dark_mode(self) -> None:
             mock_run.return_value.stdout = 'Dark'
             assert _check_system_preferences() is True
 
-    @pytest.mark.skipif(
-        not os.sys.platform.startswith('darwin'), reason='macOS only test'
-    )
+    @pytest.mark.skipif(not os.sys.platform.startswith('darwin'), reason='macOS only test')
     def test_macos_light_mode(self) -> None:
         """Test macOS light mode detection."""
         from easydiffraction.utils._vendored.jupyter_dark_detect.detector import (
@@ -195,86 +172,82 @@ def test_default_to_false(self) -> None:
         """Test that is_dark defaults to False when no detection works."""
         from easydiffraction.utils._vendored.theme_detect import is_dark
 
-        with mock.patch(
-            'easydiffraction.utils._vendored.theme_detect.'
-            '_check_jupyterlab_settings',
-            return_value=None,
-        ):
-            with mock.patch(
-                'easydiffraction.utils._vendored.theme_detect.'
-                '_check_vscode_settings',
+        with (
+            mock.patch(
+                'easydiffraction.utils._vendored.theme_detect._check_jupyterlab_settings',
+                return_value=None,
+            ),
+            mock.patch(
+                'easydiffraction.utils._vendored.theme_detect._check_vscode_settings',
                 return_value=None,
-            ):
-                with mock.patch(
-                    'easydiffraction.utils._vendored.theme_detect.'
-                    '_check_javascript_detection',
-                    return_value=None,
-                ):
-                    with mock.patch(
-                        'easydiffraction.utils._vendored.theme_detect.'
-                        '_check_system_preferences',
-                        return_value=None,
-                    ):
-                        assert is_dark() is False
+            ),
+            mock.patch(
+                'easydiffraction.utils._vendored.theme_detect._check_javascript_detection',
+                return_value=None,
+            ),
+            mock.patch(
+                'easydiffraction.utils._vendored.theme_detect._check_system_preferences',
+                return_value=None,
+            ),
+        ):
+            assert is_dark() is False
 
     def test_jupyterlab_priority(self) -> None:
         """Test that JupyterLab settings take priority."""
         from easydiffraction.utils._vendored.theme_detect import is_dark
 
-        with mock.patch(
-            'easydiffraction.utils._vendored.theme_detect.'
-            '_check_jupyterlab_settings',
-            return_value=True,
-        ):
-            with mock.patch(
-                'easydiffraction.utils._vendored.theme_detect.'
-                '_check_vscode_settings',
+        with (
+            mock.patch(
+                'easydiffraction.utils._vendored.theme_detect._check_jupyterlab_settings',
+                return_value=True,
+            ),
+            mock.patch(
+                'easydiffraction.utils._vendored.theme_detect._check_vscode_settings',
                 return_value=False,
-            ):
-                assert is_dark() is True
+            ),
+        ):
+            assert is_dark() is True
 
     def test_vscode_second_priority(self) -> None:
         """Test that VS Code settings are checked after JupyterLab."""
         from easydiffraction.utils._vendored.theme_detect import is_dark
 
-        with mock.patch(
-            'easydiffraction.utils._vendored.theme_detect.'
-            '_check_jupyterlab_settings',
-            return_value=None,
-        ):
-            with mock.patch(
-                'easydiffraction.utils._vendored.theme_detect.'
-                '_check_vscode_settings',
+        with (
+            mock.patch(
+                'easydiffraction.utils._vendored.theme_detect._check_jupyterlab_settings',
+                return_value=None,
+            ),
+            mock.patch(
+                'easydiffraction.utils._vendored.theme_detect._check_vscode_settings',
                 return_value=True,
-            ):
-                assert is_dark() is True
+            ),
+        ):
+            assert is_dark() is True
 
     def test_javascript_before_system(self) -> None:
         """Test that JS detection comes before system preferences."""
         from easydiffraction.utils._vendored.theme_detect import is_dark
 
-        with mock.patch(
-            'easydiffraction.utils._vendored.theme_detect.'
-            '_check_jupyterlab_settings',
-            return_value=None,
-        ):
-            with mock.patch(
-                'easydiffraction.utils._vendored.theme_detect.'
-                '_check_vscode_settings',
+        with (
+            mock.patch(
+                'easydiffraction.utils._vendored.theme_detect._check_jupyterlab_settings',
+                return_value=None,
+            ),
+            mock.patch(
+                'easydiffraction.utils._vendored.theme_detect._check_vscode_settings',
                 return_value=None,
-            ):
-                with mock.patch(
-                    'easydiffraction.utils._vendored.theme_detect.'
-                    '_check_javascript_detection',
-                    return_value=True,
-                ):
-                    with mock.patch(
-                        'easydiffraction.utils._vendored.theme_detect.'
-                        '_check_system_preferences',
-                        return_value=False,
-                    ):
-                        # JS detection should win over system prefs
-                        assert is_dark() is True
+            ),
+            mock.patch(
+                'easydiffraction.utils._vendored.theme_detect._check_javascript_detection',
+                return_value=True,
+            ),
+            mock.patch(
+                'easydiffraction.utils._vendored.theme_detect._check_system_preferences',
+                return_value=False,
+            ),
+        ):
+            # JS detection should win over system prefs
+            assert is_dark() is True
 
 
 class TestGetDetectionResult:
@@ -284,37 +257,35 @@ def test_returns_dict_with_all_methods(self) -> None:
         """Test that get_detection_result returns all detection methods."""
         from easydiffraction.utils._vendored.theme_detect import get_detection_result
 
-        with mock.patch(
-            'easydiffraction.utils._vendored.theme_detect.'
-            '_check_jupyterlab_settings',
-            return_value=True,
-        ):
-            with mock.patch(
-                'easydiffraction.utils._vendored.theme_detect.'
-                '_check_vscode_settings',
+        with (
+            mock.patch(
+                'easydiffraction.utils._vendored.theme_detect._check_jupyterlab_settings',
+                return_value=True,
+            ),
+            mock.patch(
+                'easydiffraction.utils._vendored.theme_detect._check_vscode_settings',
+                return_value=None,
+            ),
+            mock.patch(
+                'easydiffraction.utils._vendored.theme_detect._check_javascript_detection',
                 return_value=None,
-            ):
-                with mock.patch(
-                    'easydiffraction.utils._vendored.theme_detect.'
-                    '_check_javascript_detection',
-                    return_value=None,
-                ):
-                    with mock.patch(
-                        'easydiffraction.utils._vendored.theme_detect.'
-                        '_check_system_preferences',
-                        return_value=False,
-                    ):
-                        result = get_detection_result()
-
-                        assert 'jupyterlab_settings' in result
-                        assert 'vscode_settings' in result
-                        assert 'javascript_dom' in result
-                        assert 'system_preferences' in result
-
-                        assert result['jupyterlab_settings'] is True
-                        assert result['vscode_settings'] is None
-                        assert result['javascript_dom'] is None
-                        assert result['system_preferences'] is False
+            ),
+            mock.patch(
+                'easydiffraction.utils._vendored.theme_detect._check_system_preferences',
+                return_value=False,
+            ),
+        ):
+            result = get_detection_result()
+
+            assert 'jupyterlab_settings' in result
+            assert 'vscode_settings' in result
+            assert 'javascript_dom' in result
+            assert 'system_preferences' in result
+
+            assert result['jupyterlab_settings'] is True
+            assert result['vscode_settings'] is None
+            assert result['javascript_dom'] is None
+            assert result['system_preferences'] is False
 
 
 class TestImports:
diff --git a/tests/unit/easydiffraction/utils/test_utils.py b/tests/unit/easydiffraction/utils/test_utils.py
index 183178bd..48d5a182 100644
--- a/tests/unit/easydiffraction/utils/test_utils.py
+++ b/tests/unit/easydiffraction/utils/test_utils.py
@@ -1,11 +1,10 @@
-# SPDX-FileCopyrightText: 2021-2026 EasyDiffraction contributors <https://github.com/easyscience/diffraction>
+# SPDX-FileCopyrightText: 2025 EasyScience contributors <https://github.com/easyscience>
 # SPDX-License-Identifier: BSD-3-Clause
 
 import numpy as np
 import pytest
 
 
-
 def test_module_import():
     import easydiffraction.utils.utils as MUT
 
@@ -129,6 +128,7 @@ def test_is_pycharm_and_is_colab(monkeypatch):
 
 def test_render_table_terminal_branch(capsys, monkeypatch):
     import easydiffraction.utils.utils as MUT
+
     # Ensure non-notebook rendering; on CI/default env it's terminal anyway.
     MUT.render_table(
         columns_data=[[1, 2], [3, 4]],
@@ -354,7 +354,6 @@ def __exit__(self, *args):
 
 
 def test_resolve_tutorial_url():
-    import easydiffraction.utils.utils as MUT
 
     # Test with a specific version
     url_template = 'https://example.com/{version}/tutorials/ed-1/ed-1.ipynb'
@@ -362,4 +361,3 @@ def test_resolve_tutorial_url():
     # So we just test that the function exists and replaces {version}
     result = url_template.replace('{version}', '0.8.0')
     assert result == 'https://example.com/0.8.0/tutorials/ed-1/ed-1.ipynb'
-
diff --git a/tmp/show_d401.py b/tmp/show_d401.py
new file mode 100644
index 00000000..8ac806fc
--- /dev/null
+++ b/tmp/show_d401.py
@@ -0,0 +1,26 @@
+files_lines = [
+    ('src/easydiffraction/analysis/calculators/crysfml.py', [108,160,205]),
+    ('src/easydiffraction/analysis/calculators/cryspy.py', [357,377]),
+    ('src/easydiffraction/analysis/calculators/pdffit.py', [61]),
+    ('src/easydiffraction/analysis/minimizers/dfols.py', [55,77]),
+    ('src/easydiffraction/analysis/minimizers/lmfit.py', [40,66,96,117,140]),
+    ('src/easydiffraction/core/singleton.py', [28,45,49,65,107,116,138]),
+    ('src/easydiffraction/core/variable.py', [386]),
+    ('src/easydiffraction/datablocks/experiment/categories/data/bragg_pd.py', [312,317,329,334,339,344,494,567]),
+    ('src/easydiffraction/datablocks/experiment/categories/data/bragg_sc.py', [268,286,291,301,308,313,318]),
+    ('src/easydiffraction/datablocks/experiment/categories/data/total_pd.py', [195,200,212,217,340]),
+    ('src/easydiffraction/project/project_info.py', [119]),
+    ('src/easydiffraction/utils/environment.py', [35,47]),
+    ('src/easydiffraction/utils/logging.py', [685]),
+    ('src/easydiffraction/utils/utils.py', [308]),
+]
+for fname, lines in files_lines:
+    with open(fname) as f:
+        content = f.readlines()
+    for ln in lines:
+        lo = max(0, ln-2)
+        hi = min(len(content), ln+2)
+        for i, l in enumerate(content[lo:hi]):
+            print(f'{fname}:{lo+i+1}: {l}', end='')
+        print('---')
+
diff --git a/tmp/show_w505.py b/tmp/show_w505.py
new file mode 100644
index 00000000..6e606803
--- /dev/null
+++ b/tmp/show_w505.py
@@ -0,0 +1,27 @@
+files_lines = [
+    ('src/easydiffraction/datablocks/experiment/categories/data/bragg_pd.py', [196,277,324,527,602]),
+    ('src/easydiffraction/datablocks/experiment/categories/data/bragg_sc.py', [29,298,422]),
+    ('src/easydiffraction/datablocks/experiment/categories/data/total_pd.py', [207]),
+    ('src/easydiffraction/datablocks/experiment/categories/experiment_type/default.py', [30]),
+    ('src/easydiffraction/datablocks/experiment/categories/extinction/shelx.py', [20]),
+    ('src/easydiffraction/datablocks/experiment/item/base.py', [71,604]),
+    ('src/easydiffraction/datablocks/experiment/item/factory.py', [78]),
+    ('src/easydiffraction/datablocks/structure/item/base.py', [248]),
+    ('src/easydiffraction/display/base.py', [144]),
+    ('src/easydiffraction/display/utils.py', [21]),
+    ('src/easydiffraction/io/cif/serialize.py', [162]),
+    ('src/easydiffraction/project/project.py', [78]),
+    ('src/easydiffraction/summary/summary.py', [208]),
+    ('src/easydiffraction/utils/logging.py', [327,478]),
+    ('src/easydiffraction/utils/utils.py', [52,73]),
+]
+for fname, lines in files_lines:
+    with open(fname) as f:
+        content = f.readlines()
+    for ln in lines:
+        lo = max(0, ln-2)
+        hi = min(len(content), ln+1)
+        for i, l in enumerate(content[lo:hi]):
+            print(f'{fname}:{lo+i+1}: {l}', end='')
+        print('---')
+
diff --git a/tools/add_assets_to_docs.sh b/tools/add_assets_to_docs.sh
deleted file mode 100755
index e13eb40a..00000000
--- a/tools/add_assets_to_docs.sh
+++ /dev/null
@@ -1,16 +0,0 @@
-echo "📥 Add files from ../assets-docs"
-cp -R ../assets-docs/docs/assets/ docs/assets/
-cp -R ../assets-docs/includes/ includes/
-cp -R ../assets-docs/overrides/ overrides/
-
-echo "📥 Add files from ../assets-branding"
-mkdir -p docs/assets/images/
-cp ../assets-branding/easydiffraction/hero/dark.png docs/assets/images/hero_dark.png
-cp ../assets-branding/easydiffraction/hero/light.png docs/assets/images/hero_light.png
-cp ../assets-branding/easydiffraction/logos/dark.svg docs/assets/images/logo_dark.svg
-cp ../assets-branding/easydiffraction/logos/light.svg docs/assets/images/logo_light.svg
-cp ../assets-branding/easydiffraction/icons/color.png docs/assets/images/favicon.png
-
-mkdir -p overrides/.icons/
-cp ../assets-branding/easydiffraction/icons/bw.svg overrides/.icons/easydiffraction.svg
-cp ../assets-branding/easyscience-org/icons/eso-icon_bw.svg overrides/.icons/easyscience.svg
diff --git a/tools/cleanup_docs.sh b/tools/cleanup_docs.sh
deleted file mode 100755
index 757ec3e4..00000000
--- a/tools/cleanup_docs.sh
+++ /dev/null
@@ -1,10 +0,0 @@
-echo "🧹 Clean up after building documentation"
-rm -rf site/
-rm -rf docs/assets/javascripts
-rm -rf docs/assets/stylesheets
-rm -rf docs/assets/images/*.png
-rm -rf docs/assets/images/*.svg
-rm -rf includes/
-rm -rf overrides/
-rm -rf docs/tutorials/*.ipynb
-rm mkdocs.yml
diff --git a/tools/convert_google_docstrings_to_numpy.py b/tools/convert_google_docstrings_to_numpy.py
new file mode 100644
index 00000000..5fcb14e2
--- /dev/null
+++ b/tools/convert_google_docstrings_to_numpy.py
@@ -0,0 +1,539 @@
+#!/usr/bin/env python3
+"""Convert Google-style Python docstrings to numpydoc style."""
+
+from __future__ import annotations
+
+import ast
+import inspect
+import re
+import sys
+import textwrap
+from pathlib import Path
+
+from docstring_parser import DocstringStyle
+from docstring_parser import compose
+from docstring_parser import parse
+from format_docstring.docstring_rewriter import calc_abs_pos
+from format_docstring.docstring_rewriter import calc_line_starts
+from format_docstring.docstring_rewriter import find_docstring
+from format_docstring.docstring_rewriter import rebuild_literal
+
+SECTION_NAMES = (
+    'Args',
+    'Arguments',
+    'Returns',
+    'Raises',
+    'Yields',
+    'Attributes',
+    'Examples',
+    'Notes',
+)
+GOOGLE_SECTION_RE = re.compile(
+    r'(?m)^(?P<indent>[ \t]*)(?P<section>'
+    + '|'.join(SECTION_NAMES)
+    + r'):\s*(?P<rest>\S.*)?$'
+)
+NUMPY_SECTION_RE = re.compile(r'(?m)^[^\n]+\n-+\n')
+SECTION_KINDS_WITH_ITEMS = {'Args', 'Arguments', 'Attributes'}
+PRESERVE_BLOCK_SECTIONS = {'Examples', 'Notes'}
+GENERIC_ITEM_SECTIONS = {'Raises', 'Returns', 'Yields'}
+GENERIC_ITEM_RE = re.compile(
+    r'(?<!\S)(?P<label>[A-Za-z_][A-Za-z0-9_\.\[\], \|\(\)]{0,80}?)\s*:'
+)
+
+
+def _iter_python_files(paths: list[Path]) -> list[Path]:
+    files: list[Path] = []
+    for path in paths:
+        if path.is_file() and path.suffix == '.py':
+            files.append(path)
+            continue
+
+        if not path.exists():
+            continue
+
+        for file_path in sorted(path.rglob('*.py')):
+            if '_vendored' in file_path.parts:
+                continue
+            if '.pixi' in file_path.parts:
+                continue
+            files.append(file_path)
+
+    return files
+
+
+def _collect_names(node: ast.AST) -> list[str]:
+    names: list[str] = []
+
+    if isinstance(node, (ast.FunctionDef, ast.AsyncFunctionDef)):
+        args = list(node.args.posonlyargs) + list(node.args.args)
+        args += list(node.args.kwonlyargs)
+        names.extend(arg.arg for arg in args)
+        if node.args.vararg is not None:
+            names.append(node.args.vararg.arg)
+        if node.args.kwarg is not None:
+            names.append(node.args.kwarg.arg)
+        return [name for name in names if name not in {'self', 'cls'}]
+
+    if isinstance(node, ast.ClassDef):
+        init_method = next(
+            (
+                stmt
+                for stmt in node.body
+                if isinstance(stmt, ast.FunctionDef) and stmt.name == '__init__'
+            ),
+            None,
+        )
+        if init_method is not None:
+            names.extend(_collect_names(init_method))
+
+        for stmt in node.body:
+            if isinstance(stmt, ast.AnnAssign) and isinstance(stmt.target, ast.Name):
+                names.append(stmt.target.id)
+            elif isinstance(stmt, ast.Assign):
+                for target in stmt.targets:
+                    if isinstance(target, ast.Name):
+                        names.append(target.id)
+
+    return list(dict.fromkeys(names))
+
+
+def _strip_blank_edges(lines: list[str]) -> list[str]:
+    start = 0
+    end = len(lines)
+    while start < end and not lines[start].strip():
+        start += 1
+    while end > start and not lines[end - 1].strip():
+        end -= 1
+    return lines[start:end]
+
+
+def _join_wrapped_lines(lines: list[str]) -> str:
+    parts: list[str] = []
+    for line in lines:
+        text = re.sub(r'\s+', ' ', line.strip())
+        if not text:
+            continue
+        if parts and parts[-1].endswith('-') and not parts[-1].endswith(' -'):
+            parts[-1] = parts[-1][:-1] + text
+        else:
+            parts.append(text)
+    return ' '.join(parts)
+
+
+def _collapse_whitespace(lines: list[str]) -> str:
+    return _join_wrapped_lines(lines)
+
+
+def _repair_named_items(block_lines: list[str], names: list[str]) -> list[str] | None:
+    flat = _collapse_whitespace(block_lines)
+    if not flat or not names:
+        return None
+
+    label_pattern = '|'.join(re.escape(name) for name in sorted(set(names), key=len, reverse=True))
+    item_re = re.compile(
+        rf'(?<!\S)(?P<label>\*{{0,2}}(?:{label_pattern})(?:\s*\([^)]*\))?)\s*:'
+    )
+    matches = list(item_re.finditer(flat))
+    if not matches or matches[0].start() != 0:
+        return None
+
+    repaired: list[str] = []
+    for index, match in enumerate(matches):
+        start = match.end()
+        end = matches[index + 1].start() if index + 1 < len(matches) else len(flat)
+        description = flat[start:end].strip()
+        repaired.append(f'    {match.group("label")}: {description}' if description else f'    {match.group("label")}:')
+    return repaired
+
+
+def _repair_generic_items(block_lines: list[str]) -> list[str] | None:
+    flat = _collapse_whitespace(block_lines)
+    if not flat:
+        return None
+
+    matches = list(GENERIC_ITEM_RE.finditer(flat))
+    if not matches or matches[0].start() != 0:
+        return None
+
+    repaired: list[str] = []
+    for index, match in enumerate(matches):
+        start = match.end()
+        end = matches[index + 1].start() if index + 1 < len(matches) else len(flat)
+        description = flat[start:end].strip()
+        repaired.append(f'    {match.group("label")}: {description}' if description else f'    {match.group("label")}:')
+    return repaired
+
+
+def _repair_section(section: str, block_lines: list[str], names: list[str]) -> list[str]:
+    stripped = _strip_blank_edges(block_lines)
+    if not stripped:
+        return []
+
+    if section in SECTION_KINDS_WITH_ITEMS:
+        flat = _collapse_whitespace(stripped).lower().rstrip('.')
+        if flat == 'none':
+            return []
+        repaired = _repair_named_items(stripped, names)
+        if repaired is not None:
+            return repaired
+
+    if section in GENERIC_ITEM_SECTIONS:
+        repaired = _repair_generic_items(stripped)
+        if repaired is not None:
+            return repaired
+
+    if section in PRESERVE_BLOCK_SECTIONS:
+        return [f'    {line}' if line else '' for line in stripped]
+
+    flat = _collapse_whitespace(stripped)
+    return [f'    {flat}'] if flat else []
+
+
+def _repair_inline_sections(docstring: str, names: list[str]) -> str:
+    cleaned = inspect.cleandoc(docstring.replace('\r\n', '\n'))
+    lines = cleaned.split('\n')
+    out: list[str] = []
+    index = 0
+
+    while index < len(lines):
+        raw_line = lines[index]
+        heading = GOOGLE_SECTION_RE.match(raw_line)
+        if heading is None:
+            out.append(raw_line.rstrip())
+            index += 1
+            continue
+
+        section = heading.group('section')
+        section_name = 'Args' if section == 'Arguments' else section
+        out.append(f'{section_name}:')
+
+        block_lines: list[str] = []
+        rest = heading.group('rest')
+        if rest:
+            block_lines.append(rest)
+
+        index += 1
+        while index < len(lines):
+            next_line = lines[index]
+            if GOOGLE_SECTION_RE.match(next_line):
+                break
+            if (
+                section_name not in PRESERVE_BLOCK_SECTIONS
+                and not next_line.strip()
+                and index + 1 < len(lines)
+                and lines[index + 1].strip()
+                and GOOGLE_SECTION_RE.match(lines[index + 1]) is None
+            ):
+                break
+            block_lines.append(next_line.rstrip())
+            index += 1
+
+        out.extend(_repair_section(section_name, block_lines, names))
+
+    return '\n'.join(out)
+
+
+def _looks_google(docstring: str) -> bool:
+    return bool(GOOGLE_SECTION_RE.search(docstring))
+
+
+def _looks_numpydoc(docstring: str) -> bool:
+    return bool(NUMPY_SECTION_RE.search(docstring))
+
+
+def _meta_kinds(parsed) -> set[str]:
+    kinds: set[str] = set()
+    for meta in parsed.meta:
+        args = getattr(meta, 'args', None) or []
+        if not args:
+            continue
+        kinds.add(str(args[0]).lower())
+    return kinds
+
+
+def _contains_unparsed_sections(parsed) -> bool:
+    for text in (parsed.short_description, parsed.long_description):
+        if text and GOOGLE_SECTION_RE.search(text):
+            return True
+    return False
+
+
+def _has_section_heading(docstring: str, section: str) -> bool:
+    return re.search(rf'(?m)^[ \t]*{re.escape(section)}:\s*(?:\S.*)?$', docstring) is not None
+
+
+def _is_safe_conversion(docstring: str, parsed) -> bool:
+    if '::' in docstring:
+        return False
+
+    kinds = _meta_kinds(parsed)
+    if _contains_unparsed_sections(parsed):
+        return False
+
+    expectations = {
+        'Args': 'param',
+        'Arguments': 'param',
+        'Attributes': 'attribute',
+        'Returns': 'returns',
+        'Raises': 'raises',
+        'Yields': 'yields',
+        'Examples': 'examples',
+    }
+    for section, expected_kind in expectations.items():
+        if _has_section_heading(docstring, section) and expected_kind not in kinds:
+            return False
+
+    return True
+
+
+def _is_section_header(lines: list[str], index: int) -> bool:
+    return index + 1 < len(lines) and bool(lines[index].strip()) and set(lines[index + 1].strip()) == {'-'}
+
+
+def _wrap_paragraph(lines: list[str], width: int, indent: str = '') -> list[str]:
+    if not lines:
+        return []
+
+    text = _join_wrapped_lines(lines)
+    if not text:
+        return [''] if lines else []
+
+    return textwrap.wrap(
+        text,
+        width=width,
+        initial_indent=indent,
+        subsequent_indent=indent,
+        break_long_words=False,
+        break_on_hyphens=False,
+    )
+
+
+def _format_freeform_block(lines: list[str], width: int = 72, indent: str = '') -> list[str]:
+    stripped = _strip_blank_edges(lines)
+    if not stripped:
+        return []
+
+    formatted: list[str] = []
+    paragraph: list[str] = []
+    for line in stripped:
+        if not line.strip():
+            if paragraph:
+                formatted.extend(_wrap_paragraph(paragraph, width=width, indent=indent))
+                paragraph = []
+            if formatted and formatted[-1] != '':
+                formatted.append('')
+            continue
+
+        content = line.strip()
+        if content.startswith(('>>>', '...')):
+            if paragraph:
+                formatted.extend(_wrap_paragraph(paragraph, width=width, indent=indent))
+                paragraph = []
+            formatted.append(f'{indent}{content}')
+            continue
+
+        paragraph.append(content)
+
+    if paragraph:
+        formatted.extend(_wrap_paragraph(paragraph, width=width, indent=indent))
+
+    return formatted
+
+
+def _format_named_section(block_lines: list[str]) -> list[str]:
+    lines = _strip_blank_edges(block_lines)
+    if not lines:
+        return []
+
+    formatted: list[str] = []
+    index = 0
+    while index < len(lines):
+        if not lines[index].strip():
+            index += 1
+            continue
+
+        header = lines[index].strip()
+        formatted.append(header)
+        index += 1
+
+        description: list[str] = []
+        while index < len(lines):
+            line = lines[index]
+            if not line.strip():
+                index += 1
+                if description:
+                    break
+                continue
+            if not line.startswith(' ') and not line.startswith('\t'):
+                break
+            description.append(line.strip())
+            index += 1
+
+        if description:
+            formatted.extend(_wrap_paragraph(description, width=68, indent='    '))
+        elif formatted and formatted[-1] != '':
+            formatted.append('')
+
+    if formatted and formatted[-1] == '':
+        formatted.pop()
+    return formatted
+
+
+def _format_return_like_section(block_lines: list[str]) -> list[str]:
+    lines = _strip_blank_edges(block_lines)
+    if not lines:
+        return []
+
+    first = next((line for line in lines if line.strip()), '')
+    if first.startswith((' ', '\t')):
+        return _format_freeform_block(lines, width=68, indent='    ')
+
+    return _format_named_section(lines)
+
+
+def _format_numpydoc_output(docstring: str) -> str:
+    lines = docstring.strip('\n').splitlines()
+    formatted: list[str] = []
+    index = 0
+
+    preamble: list[str] = []
+    while index < len(lines) and not _is_section_header(lines, index):
+        preamble.append(lines[index])
+        index += 1
+    formatted.extend(_format_freeform_block(preamble))
+
+    while index < len(lines):
+        if not _is_section_header(lines, index):
+            index += 1
+            continue
+
+        if formatted and formatted[-1] != '':
+            formatted.append('')
+        heading = lines[index].strip()
+        underline = lines[index + 1].strip()
+        formatted.extend([heading, underline])
+        index += 2
+
+        block: list[str] = []
+        while index < len(lines) and not _is_section_header(lines, index):
+            block.append(lines[index])
+            index += 1
+
+        if heading in {'Parameters', 'Attributes'}:
+            formatted.extend(_format_named_section(block))
+        elif heading in {'Returns', 'Raises', 'Yields'}:
+            formatted.extend(_format_return_like_section(block))
+        else:
+            formatted.extend(_format_freeform_block(block))
+
+    return '\n'.join(_strip_blank_edges(formatted))
+
+
+def _convert_docstring(docstring: str, names: list[str]) -> str | None:
+    cleaned = inspect.cleandoc(docstring)
+    if not _looks_google(cleaned):
+        return None
+
+    repaired = _repair_inline_sections(cleaned, names)
+
+    try:
+        parsed = parse(repaired, style=DocstringStyle.GOOGLE)
+    except Exception:
+        return None
+
+    if not _is_safe_conversion(repaired, parsed):
+        return None
+
+    converted = _format_numpydoc_output(compose(parsed, style=DocstringStyle.NUMPYDOC))
+    return converted if converted != cleaned else None
+
+
+def _reformat_numpydoc_docstring(docstring: str) -> str | None:
+    cleaned = inspect.cleandoc(docstring)
+    if not _looks_numpydoc(cleaned):
+        return None
+
+    formatted = _format_numpydoc_output(cleaned)
+    return formatted if formatted != cleaned else None
+
+
+def _format_multiline_docstring(content: str, indent: int) -> str:
+    indent_str = ' ' * indent
+    lines = content.strip('\n').splitlines()
+    body = '\n'.join(f'{indent_str}{line}' if line else '' for line in lines)
+    return f'\n{body}\n{indent_str}'
+
+
+def _convert_file(path: Path) -> bool:
+    source_code = path.read_text()
+    tree = ast.parse(source_code, type_comments=True)
+    line_starts = calc_line_starts(source_code)
+    replacements: list[tuple[int, int, str]] = []
+
+    nodes: list[ast.AST] = [tree]
+    nodes.extend(ast.walk(tree))
+
+    for node in nodes:
+        if not isinstance(node, (ast.Module, ast.ClassDef, ast.FunctionDef, ast.AsyncFunctionDef)):
+            continue
+
+        docstring_obj = find_docstring(node)
+        if docstring_obj is None:
+            continue
+
+        value = docstring_obj.value
+        end_lineno = getattr(value, 'end_lineno', None)
+        end_col_offset = getattr(value, 'end_col_offset', None)
+        if end_lineno is None or end_col_offset is None:
+            continue
+
+        docstring = ast.get_docstring(node, clean=False)
+        if docstring is None:
+            continue
+
+        converted = _convert_docstring(docstring, _collect_names(node))
+        if converted is None:
+            converted = _reformat_numpydoc_docstring(docstring)
+        if converted is None:
+            continue
+
+        start = calc_abs_pos(source_code, line_starts, value.lineno, value.col_offset)
+        end = calc_abs_pos(source_code, line_starts, end_lineno, end_col_offset)
+        original_literal = source_code[start:end]
+        leading_indent = getattr(value, 'col_offset', 0)
+        formatted = _format_multiline_docstring(converted, leading_indent)
+        new_literal = rebuild_literal(original_literal, formatted)
+        if new_literal is None or new_literal == original_literal:
+            continue
+
+        replacements.append((start, end, new_literal))
+
+    if not replacements:
+        return False
+
+    replacements.sort(reverse=True)
+    new_source = source_code
+    for start, end, replacement in replacements:
+        new_source = new_source[:start] + replacement + new_source[end:]
+
+    compile(new_source, str(path), 'exec')
+    path.write_text(new_source)
+    return True
+
+
+def main(argv: list[str]) -> int:
+    input_paths = [Path(arg) for arg in argv] if argv else [Path('src'), Path('tools')]
+    changed = 0
+
+    for path in _iter_python_files(input_paths):
+        if _convert_file(path):
+            changed += 1
+            print(f'Converted {path}')
+
+    print(f'Converted docstrings in {changed} file(s).')
+    return 0
+
+
+if __name__ == '__main__':
+    raise SystemExit(main(sys.argv[1:]))
diff --git a/tools/create_mkdocs_yml.py b/tools/create_mkdocs_yml.py
deleted file mode 100644
index fb2b8685..00000000
--- a/tools/create_mkdocs_yml.py
+++ /dev/null
@@ -1,158 +0,0 @@
-import os
-import re
-from pathlib import Path
-from typing import Any
-from typing import Dict
-from typing import List
-
-import material.extensions.emoji  # side-effect: register emoji tag
-import pymdownx.superfences  # side-effect: register superfence tag
-import yaml
-
-# Side-effect imports above ensure tagged YAML constructors
-# (e.g., !!python/name:...) can be resolved during load.
-
-
-def _activate_yaml_tag_side_effects() -> None:  # pragma: no cover - trivial
-    """Access imported modules' attributes so Ruff sees them as used.
-
-    The primary purpose of importing these packages is to ensure the
-    tagged constructors are importable during YAML load. Accessing the
-    attributes makes the side-effect explicit without needing noqa.
-    """
-    _ = material.extensions.emoji.twemoji  # type: ignore[attr-defined]
-    _ = pymdownx.superfences.fence_code_format  # type: ignore[attr-defined]
-
-
-_activate_yaml_tag_side_effects()
-
-
-def load_yaml_with_env_variables(file_path: str) -> Dict[str, Any]:
-    """Load YAML resolving env variables declared as !ENV ${VAR_NAME}.
-
-    Args:
-        file_path (str): Path to the YAML file.
-
-    Returns:
-        dict: Parsed YAML content with environment variables replaced.
-    """
-    tag = '!ENV'
-    pattern = re.compile(r'.*?\${([A-Z0-9_]+)}.*?')
-
-    def constructor_env_variables(loader, node):  # type: ignore[all]
-        """YAML constructor replacing !ENV markers with values."""
-        value = loader.construct_scalar(node)  # type: ignore[attr-defined]
-        for var in pattern.findall(value):
-            value = value.replace(f'${{{var}}}', os.environ.get(var, var))
-        return value
-
-    loader = yaml.FullLoader
-    loader.add_implicit_resolver(tag, pattern, None)
-    loader.add_constructor(tag, constructor_env_variables)
-
-    with Path(file_path).open('r', encoding='utf-8') as fh:
-        return yaml.full_load(fh)
-
-
-def merge_yaml(base_config: Dict[str, Any], override_config: Dict[str, Any]) -> Dict[str, Any]:
-    """Deep merge two YAML dicts; override has priority."""
-    if not isinstance(base_config, dict):
-        return override_config
-
-    merged_config = base_config.copy()
-
-    for key, override_value in override_config.items():
-        if key in merged_config:
-            base_value = merged_config[key]
-            if isinstance(base_value, dict) and isinstance(override_value, dict):
-                merged_config[key] = merge_yaml(base_value, override_value)
-            elif isinstance(base_value, list) and isinstance(override_value, list):
-                merged_config[key] = merge_lists(base_value, override_value)
-            else:
-                merged_config[key] = override_value
-        else:
-            merged_config[key] = override_value
-
-    return merged_config
-
-
-def merge_lists(base_list: List[Any], override_list: List[Any]) -> List[Any]:
-    """Merge two lists with handling of single-key dict items.
-
-    Single-key dicts sharing a key are deep-merged; other items are
-    appended if not already present.
-
-    Args:
-        base_list (list): The base list.
-        override_list (list): The overriding list.
-
-    Returns:
-        list: The merged list.
-    """
-    merged_list = []
-    seen_items = {}
-
-    for item in base_list + override_list:
-        if isinstance(item, dict) and len(item) == 1:
-            key = next(iter(item))  # Extract dictionary key (e.g., "mkdocs-jupyter")
-            if key in seen_items:
-                seen_items[key] = merge_yaml(seen_items[key], item[key])  # Merge dictionaries
-            else:
-                seen_items[key] = item[key]
-        elif item not in merged_list:
-            merged_list.append(item)
-
-    # Convert merged dictionary values back into list format
-    for key, value in seen_items.items():
-        merged_list.append({key: value})
-
-    return merged_list
-
-
-def save_yaml(data: Dict[str, Any], output_file: str) -> None:
-    """Write YAML preserving !!python/name tags and Unicode."""
-
-    class CustomDumper(yaml.Dumper):
-        """Custom dumper avoiding unnecessary anchors & quotes."""
-
-        def ignore_aliases(self, _):  # noqa: D401 - simple override
-            return True
-
-    out_path = Path(output_file)
-    with out_path.open('w', encoding='utf-8') as f:
-        f.write('# WARNING: This file is auto-generated during the build process.\n')
-        f.write('# DO NOT EDIT THIS FILE MANUALLY.\n')
-        f.write('# It is created by merging:\n')
-        f.write('#   - Generic YAML file: ../assets-docs/mkdocs.yml\n')
-        f.write('#   - Project specific YAML file: docs/mkdocs.yml\n\n')
-
-    with out_path.open('a', encoding='utf-8') as f:
-        yaml.dump(
-            data,
-            f,
-            Dumper=CustomDumper,  # Use custom dumper
-            allow_unicode=True,  # Ensure Unicode characters like © are preserved
-            default_flow_style=False,  #
-            sort_keys=False,  # Preserve the order of keys
-        )
-
-
-def main() -> None:
-    """Main function to read, merge, and save YAML configurations."""
-    generic_config_path = '../assets-docs/mkdocs.yml'
-    specific_config_path = 'docs/mkdocs.yml'
-    output_path = 'mkdocs.yml'
-
-    print(f'Reading generic config: {generic_config_path}')
-    base_config = load_yaml_with_env_variables(generic_config_path)
-
-    print(f'Reading project specific config: {specific_config_path}')
-    override_config = load_yaml_with_env_variables(specific_config_path)
-
-    print(f'Saving merged config: {output_path}')
-    merged_config = merge_yaml(base_config, override_config)
-    save_yaml(merged_config, output_path)
-
-
-if __name__ == '__main__':
-    main()
diff --git a/tools/license_headers.py b/tools/license_headers.py
new file mode 100644
index 00000000..47d23524
--- /dev/null
+++ b/tools/license_headers.py
@@ -0,0 +1,315 @@
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
+# SPDX-License-Identifier: BSD-3-Clause
+"""Add, remove, or check SPDX headers in Python files."""
+
+from __future__ import annotations
+
+import argparse
+import fnmatch
+import tomllib
+from datetime import datetime
+from pathlib import Path
+from typing import Any
+from typing import Optional
+from typing import Union
+
+from git import Repo
+from spdx_headers.core import find_repository_root
+from spdx_headers.core import get_copyright_info
+from spdx_headers.core import has_spdx_header
+from spdx_headers.data import load_license_data
+from spdx_headers.operations import add_header_to_single_file
+from spdx_headers.operations import remove_header_from_single_file
+
+LICENSE_DATABASE = load_license_data()
+
+
+def load_pyproject(repo_path: Union[str, Path]) -> dict[str, Any]:
+    """Load and return parsed ``pyproject.toml`` data for the repository."""
+    repo_root = find_repository_root(repo_path)
+    pyproject_path = repo_root / 'pyproject.toml'
+
+    with pyproject_path.open('rb') as file_handle:
+        return tomllib.load(file_handle)
+
+
+def get_pyproject_value(pyproject_data: dict[str, Any], dotted_key: str) -> Any:
+    """Return a nested ``pyproject.toml`` value from a dotted key."""
+    value: Any = pyproject_data
+    for part in dotted_key.split('.'):
+        if not isinstance(value, dict) or part not in value:
+            raise KeyError(dotted_key)
+        value = value[part]
+    return value
+
+
+def normalize_pattern(pattern: str) -> str:
+    """Normalize an exclude pattern to a POSIX-style relative path."""
+    normalized = Path(pattern).as_posix()
+    if normalized.startswith('./'):
+        normalized = normalized[2:]
+    return normalized.rstrip('/')
+
+
+def get_exclude_patterns(
+    repo_path: Union[str, Path],
+    exclude_values: list[str],
+    exclude_from_pyproject_toml: Optional[str],
+) -> list[str]:
+    """Return normalized exclude patterns from CLI and ``pyproject.toml``."""
+    pyproject_data = load_pyproject(repo_path)
+    patterns: list[str] = []
+
+    if exclude_from_pyproject_toml:
+        value = get_pyproject_value(pyproject_data, exclude_from_pyproject_toml)
+        if not isinstance(value, list) or not all(isinstance(item, str) for item in value):
+            raise ValueError(
+                f'{exclude_from_pyproject_toml} in pyproject.toml must be a list of strings.',
+            )
+        patterns.extend(value)
+
+    for item in exclude_values:
+        try:
+            value = get_pyproject_value(pyproject_data, item)
+        except KeyError:
+            patterns.append(item)
+            continue
+
+        if not isinstance(value, list) or not all(isinstance(entry, str) for entry in value):
+            raise ValueError(f'{item} in pyproject.toml must be a list of strings.')
+        patterns.extend(value)
+
+    normalized_patterns: list[str] = []
+    seen: set[str] = set()
+    for pattern in patterns:
+        normalized = normalize_pattern(pattern)
+        if normalized and normalized not in seen:
+            normalized_patterns.append(normalized)
+            seen.add(normalized)
+
+    return normalized_patterns
+
+
+def get_file_creation_year(file_path: Union[str, Path]) -> str:
+    """Return the year the file was first added to Git history.
+
+    If the year cannot be determined, fall back to the current year.
+    """
+    file_path = Path(file_path)
+
+    repo = Repo(file_path, search_parent_directories=True)
+    root = Path(repo.working_tree_dir).resolve()
+    rel_path = file_path.resolve().relative_to(root)
+
+    rel_path_git = rel_path.as_posix()
+
+    log_output = repo.git.log(
+        '--follow',
+        '--diff-filter=A',
+        '--reverse',
+        '--format=%ad',
+        '--date=format:%Y',
+        '--',
+        rel_path_git,
+    ).strip()
+
+    year = log_output.splitlines()[0].strip() if log_output else ''
+
+    return year or str(datetime.now().year)
+
+
+def get_org_url(repo_path: Union[str, Path]) -> str:
+    """Return the organization URL derived from the repository source URL."""
+    pyproject_data = load_pyproject(repo_path)
+    repo_url = pyproject_data['project']['urls']['Source Code']
+    return repo_url.rsplit('/', 1)[0]
+
+
+def get_project_license(repo_path: Union[str, Path]) -> str:
+    """Return the project license value from ``pyproject.toml``."""
+    pyproject_data = load_pyproject(repo_path)
+    return pyproject_data['project']['license']
+
+
+def get_copyright_holder(repo_path: Union[str, Path]) -> str:
+    """Return the repository copyright holder name."""
+    _, name, _ = get_copyright_info(repo_path)
+    return name
+
+
+def add_spdx_header(
+    target_file: Union[str, Path],
+    *,
+    license_key: str,
+    copyright_holder: str,
+    org_url: str,
+) -> None:
+    """Add SPDX headers to one file."""
+    year = get_file_creation_year(target_file)
+
+    add_header_to_single_file(
+        filepath=target_file,
+        license_key=license_key,
+        license_data=LICENSE_DATABASE,
+        year=year,
+        name=copyright_holder,
+        email=org_url,
+    )
+
+
+def is_excluded(relative_path: str, exclude_patterns: list[str]) -> bool:
+    """Return whether a relative path should be excluded."""
+    for pattern in exclude_patterns:
+        if fnmatch.fnmatch(relative_path, pattern):
+            return True
+        if relative_path == pattern:
+            return True
+        if relative_path.startswith(f'{pattern}/'):
+            return True
+    return False
+
+
+def iter_python_files(
+    paths: list[str],
+    *,
+    repo_root: Path,
+    exclude_patterns: list[str],
+    parser: argparse.ArgumentParser,
+) -> list[Path]:
+    """Collect Python files under the given paths after exclusions."""
+    files: list[Path] = []
+    seen: set[Path] = set()
+
+    for base_dir in paths:
+        base_path = Path(base_dir)
+        if not base_path.exists():
+            parser.error(f'Path does not exist: {base_dir}')
+
+        if base_path.is_file():
+            candidates = [base_path] if base_path.suffix == '.py' else []
+        else:
+            candidates = sorted(base_path.rglob('*.py'))
+
+        for py_file in candidates:
+            resolved = py_file.resolve()
+            try:
+                relative_path = resolved.relative_to(repo_root).as_posix()
+            except ValueError:
+                relative_path = py_file.as_posix()
+
+            if is_excluded(relative_path, exclude_patterns):
+                continue
+
+            if resolved not in seen:
+                files.append(py_file)
+                seen.add(resolved)
+
+    return files
+
+
+def run_add(
+    files: list[Path],
+    *,
+    license_key: str,
+    copyright_holder: str,
+    org_url: str,
+) -> int:
+    """Add SPDX headers to all selected files."""
+    for py_file in files:
+        add_spdx_header(
+            py_file,
+            license_key=license_key,
+            copyright_holder=copyright_holder,
+            org_url=org_url,
+        )
+    return 0
+
+
+def run_remove(files: list[Path]) -> int:
+    """Remove SPDX headers from all selected files."""
+    for py_file in files:
+        remove_header_from_single_file(py_file)
+    return 0
+
+
+def run_check(files: list[Path]) -> int:
+    """Check SPDX headers in all selected files."""
+    missing_files = [py_file for py_file in files if not has_spdx_header(py_file)]
+
+    if not missing_files:
+        print('✓ All Python files have valid SPDX headers.')
+        return 0
+
+    print('✗ The following files are missing SPDX headers:')
+    for py_file in missing_files:
+        print(f'  - {py_file.as_posix()}')
+    print(f'\nFound {len(missing_files)} files without SPDX headers.')
+    return 1
+
+
+def build_parser() -> argparse.ArgumentParser:
+    """Build the CLI argument parser."""
+    parser = argparse.ArgumentParser(
+        description='Add, remove, or check SPDX headers in Python files.',
+    )
+    subparsers = parser.add_subparsers(dest='command', required=True)
+
+    for command_name in ('check', 'remove', 'add'):
+        command_parser = subparsers.add_parser(command_name)
+        command_parser.add_argument(
+            'paths',
+            nargs='+',
+            help='Relative paths to scan (e.g. src tests)',
+        )
+        command_parser.add_argument(
+            '--exclude',
+            nargs='*',
+            default=[],
+            help='Exclude paths, glob patterns, or pyproject dotted keys.',
+        )
+        command_parser.add_argument(
+            '--exclude-from-pyproject-toml',
+            help='Read exclude patterns from a dotted key in pyproject.toml.',
+        )
+
+    return parser
+
+
+def main(argv: Optional[list[str]] = None) -> int:
+    """Run the SPDX header CLI."""
+    parser = build_parser()
+    args = parser.parse_args(argv)
+
+    repo_path = Path('.').resolve()
+    repo_root = find_repository_root(repo_path).resolve()
+    exclude_patterns = get_exclude_patterns(
+        repo_path,
+        args.exclude,
+        args.exclude_from_pyproject_toml,
+    )
+    files = iter_python_files(
+        args.paths,
+        repo_root=repo_root,
+        exclude_patterns=exclude_patterns,
+        parser=parser,
+    )
+
+    if args.command == 'check':
+        return run_check(files)
+
+    if args.command == 'remove':
+        return run_remove(files)
+
+    license_key = get_project_license(repo_path)
+    copyright_holder = get_copyright_holder(repo_path)
+    org_url = get_org_url(repo_path)
+    return run_add(
+        files,
+        license_key=license_key,
+        copyright_holder=copyright_holder,
+        org_url=org_url,
+    )
+
+
+if __name__ == '__main__':
+    raise SystemExit(main())
diff --git a/tools/param_consistency.py b/tools/param_consistency.py
new file mode 100644
index 00000000..cd63989c
--- /dev/null
+++ b/tools/param_consistency.py
@@ -0,0 +1,677 @@
+"""Check and fix consistency between Parameter/Descriptor
+definitions and their public property docstrings and type
+annotations.
+
+Usage::
+
+    python param_consistency.py --check
+    python param_consistency.py --fix
+    python param_consistency.py src/mypackage/ --check
+
+Template (see architecture.md §9.8 for the full spec)
+------------------------------------------------------
+Given ``description='Length of the a axis of the unit
+cell.'``, ``units='Å'``, and type ``Parameter``:
+
+Writable::
+
+    @property
+    def length_a(self) -> Parameter:
+        \"""Length of the a axis of the unit cell (Å).
+
+        Reading this property returns the underlying
+        ``Parameter`` object. Assigning to it updates
+        the parameter value.
+        \"""
+        return self._length_a
+
+    @length_a.setter
+    def length_a(self, value: float) -> None:
+        self._length_a.value = value
+
+Read-only::
+
+    @property
+    def length_a(self) -> Parameter:
+        \"""Length of the a axis of the unit cell (Å).
+
+        Reading this property returns the underlying
+        ``Parameter`` object.
+        \"""
+        return self._length_a
+
+Rules:
+
+- ``{desc}`` = description without trailing period
+  (single source of truth).
+- ``{units}`` = units string; omit ``({units})`` when
+  absent or empty.
+- Getter summary: ``{desc} ({units}).`` or ``{desc}.``
+- Getter body mentions the descriptor class and, for
+  writable properties, notes that assignment updates
+  the value.
+- Setter has **no** docstring.
+- Getter return annotation: the descriptor class name.
+- Setter value annotation: ``float`` for numeric,
+  ``str`` for string.
+- Setter return annotation: ``None``.
+
+Exit code 0 when all checks pass (or fix succeeds),
+1 otherwise.
+"""
+
+from __future__ import annotations
+
+import argparse
+import ast
+import sys
+from dataclasses import dataclass
+from dataclasses import field
+from pathlib import Path
+
+# ---------------------------------------------------------
+# Constants
+# ---------------------------------------------------------
+
+_SRC_ROOT = (
+    Path(__file__).resolve().parents[1]
+    / 'src'
+    / 'easydiffraction'
+)
+
+_DESCRIPTOR_TYPES = frozenset(
+    {'Parameter', 'NumericDescriptor', 'StringDescriptor'}
+)
+
+# Canonical setter value annotation per descriptor family.
+_SETTER_ANN: dict[str, str] = {
+    'Parameter': 'float',
+    'NumericDescriptor': 'float',
+    'StringDescriptor': 'str',
+}
+
+
+# ---------------------------------------------------------
+# Data structures
+# ---------------------------------------------------------
+
+
+@dataclass
+class DescriptorInfo:
+    """Descriptor definition from ``__init__``."""
+
+    attr_name: str  # e.g. '_length_a'
+    prop_name: str  # e.g. 'length_a'
+    type_name: str  # 'Parameter' | …
+    description: str  # e.g. 'Length of …'
+    units: str | None  # e.g. 'Å', or None
+
+
+@dataclass
+class PropertyInfo:
+    """Property getter / setter AST nodes."""
+
+    name: str
+    getter: ast.FunctionDef
+    setter: ast.FunctionDef | None = None
+
+
+@dataclass
+class Edit:
+    """A source-level edit.
+
+    Replace ``lines[start:end]`` with *new_text*.
+    When ``start == end`` the edit is an insertion
+    before that line.
+    """
+
+    start: int  # 0-based inclusive
+    end: int  # 0-based exclusive
+    new_text: str
+
+
+@dataclass
+class FileResult:
+    """Analysis result for one source file."""
+
+    path: Path
+    issues: list[str] = field(default_factory=list)
+    edits: list[Edit] = field(default_factory=list)
+
+
+# ---------------------------------------------------------
+# Template helpers
+# ---------------------------------------------------------
+
+
+def _strip_dot(s: str) -> str:
+    """Remove trailing period and whitespace."""
+    s = s.rstrip()
+    if s.endswith('.'):
+        s = s[:-1].rstrip()
+    return s
+
+
+def _getter_docstring(
+    desc: str,
+    units: str | None,
+    type_name: str,
+    has_setter: bool,
+    indent: str,
+) -> str:
+    """Build the expected getter docstring."""
+    d = _strip_dot(desc)
+    summary = f'{d} ({units}).' if units else f'{d}.'
+
+    if has_setter:
+        body = (
+            f'Reading this property returns the underlying '
+            f'``{type_name}`` object. '
+            f'Assigning to it updates the parameter value.'
+        )
+    else:
+        body = (
+            f'Reading this property returns the underlying '
+            f'``{type_name}`` object.'
+        )
+
+    return (
+        f'{indent}"""{summary}\n'
+        f'\n'
+        f'{indent}{body}\n'
+        f'{indent}"""\n'
+    )
+
+
+def _normalize(text: str) -> str:
+    """Collapse whitespace for comparison."""
+    return ' '.join(text.split()).lower()
+
+
+# ---------------------------------------------------------
+# AST helpers
+# ---------------------------------------------------------
+
+
+def _call_name(node: ast.Call) -> str | None:
+    """Return the simple name of a Call's func."""
+    if isinstance(node.func, ast.Name):
+        return node.func.id
+    if isinstance(node.func, ast.Attribute):
+        return node.func.attr
+    return None
+
+
+def _kwarg_str(
+    call: ast.Call,
+    name: str,
+) -> str | None:
+    """Extract a string keyword argument."""
+    for kw in call.keywords:
+        if (
+            kw.arg == name
+            and isinstance(kw.value, ast.Constant)
+            and isinstance(kw.value.value, str)
+        ):
+            return kw.value.value
+    return None
+
+
+def _ann_str(ann: ast.expr | None) -> str | None:
+    """Return annotation as a source string."""
+    if ann is None:
+        return None
+    if isinstance(ann, ast.Name):
+        return ann.id
+    if isinstance(ann, ast.Constant) and isinstance(
+        ann.value, str
+    ):
+        return ann.value  # forward reference
+    return ast.unparse(ann)
+
+
+def _body_indent(
+    func: ast.FunctionDef,
+    lines: list[str],
+) -> str:
+    """Compute the indentation for the body."""
+    def_line = lines[func.lineno - 1]
+    return ' ' * (
+        len(def_line) - len(def_line.lstrip()) + 4
+    )
+
+
+def _def_line_range(
+    func: ast.FunctionDef,
+    lines: list[str],
+) -> tuple[int, int]:
+    """Return 0-based [start, end) of the def."""
+    start = func.lineno - 1
+    for i in range(start, min(start + 10, len(lines))):
+        if lines[i].rstrip().endswith(':'):
+            return start, i + 1
+        if func.body and i + 1 >= func.body[0].lineno:
+            break
+    return start, start + 1
+
+
+def _docstring_range(
+    func: ast.FunctionDef,
+) -> tuple[str | None, int, int]:
+    """Return (text, start_0, end_exclusive_0)."""
+    if not func.body:
+        return None, -1, -1
+    first = func.body[0]
+    if (
+        isinstance(first, ast.Expr)
+        and isinstance(first.value, ast.Constant)
+        and isinstance(first.value.value, str)
+    ):
+        # end_lineno is 1-based inclusive
+        return (
+            first.value.value,
+            first.lineno - 1,
+            first.end_lineno,
+        )
+    return None, -1, -1
+
+
+# ---------------------------------------------------------
+# Extraction
+# ---------------------------------------------------------
+
+
+def _extract_descriptors(
+    cls: ast.ClassDef,
+) -> dict[str, DescriptorInfo]:
+    """Find self._xxx = DescriptorType(...) in init."""
+    result: dict[str, DescriptorInfo] = {}
+
+    init = next(
+        (
+            n
+            for n in cls.body
+            if isinstance(n, ast.FunctionDef)
+            and n.name == '__init__'
+        ),
+        None,
+    )
+    if init is None:
+        return result
+
+    for stmt in ast.walk(init):
+        if (
+            isinstance(stmt, ast.Assign)
+            and len(stmt.targets) == 1
+        ):
+            target = stmt.targets[0]
+            value = stmt.value
+        elif (
+            isinstance(stmt, ast.AnnAssign)
+            and stmt.value is not None
+        ):
+            target = stmt.target
+            value = stmt.value
+        else:
+            continue
+
+        # Target must be self._xxx
+        if not (
+            isinstance(target, ast.Attribute)
+            and isinstance(target.value, ast.Name)
+            and target.value.id == 'self'
+            and target.attr.startswith('_')
+        ):
+            continue
+
+        if not isinstance(value, ast.Call):
+            continue
+
+        name = _call_name(value)
+        if name not in _DESCRIPTOR_TYPES:
+            continue
+
+        desc_str = _kwarg_str(value, 'description')
+        if not desc_str or not _strip_dot(desc_str):
+            continue
+
+        units = _kwarg_str(value, 'units') or None
+        prop = target.attr.lstrip('_')
+        result[prop] = DescriptorInfo(
+            target.attr, prop, name, desc_str, units
+        )
+
+    return result
+
+
+def _extract_properties(
+    cls: ast.ClassDef,
+) -> dict[str, PropertyInfo]:
+    """Find property getters and setters."""
+    result: dict[str, PropertyInfo] = {}
+
+    for item in cls.body:
+        if not isinstance(item, ast.FunctionDef):
+            continue
+        for dec in item.decorator_list:
+            # @property
+            if (
+                isinstance(dec, ast.Name)
+                and dec.id == 'property'
+            ):
+                result[item.name] = PropertyInfo(
+                    item.name, item
+                )
+                break
+            # @xxx.setter
+            if (
+                isinstance(dec, ast.Attribute)
+                and dec.attr == 'setter'
+                and isinstance(dec.value, ast.Name)
+                and dec.value.id in result
+            ):
+                result[dec.value.id].setter = item
+                break
+
+    return result
+
+
+# ---------------------------------------------------------
+# Analysis (shared by --check and --fix)
+# ---------------------------------------------------------
+
+
+def _analyze_file(path: Path) -> FileResult:
+    """Analyze one file, return issues and edits."""
+    result = FileResult(path)
+    try:
+        source = path.read_text(encoding='utf-8')
+    except Exception:  # noqa: BLE001
+        return result
+
+    lines = source.splitlines(keepends=True)
+
+    try:
+        tree = ast.parse(source, filename=str(path))
+    except SyntaxError:
+        return result
+
+    for node in tree.body:
+        if not isinstance(node, ast.ClassDef):
+            continue
+
+        descriptors = _extract_descriptors(node)
+        properties = _extract_properties(node)
+
+        for prop_name, prop in properties.items():
+            if prop_name not in descriptors:
+                continue
+            desc = descriptors[prop_name]
+            _analyze_property(
+                node.name, prop, desc, lines, result
+            )
+
+    return result
+
+
+def _analyze_property(
+    cls_name: str,
+    prop: PropertyInfo,
+    desc: DescriptorInfo,
+    lines: list[str],
+    result: FileResult,
+) -> None:
+    """Check one property against the template."""
+    loc = f'{cls_name}.{prop.name}'
+    indent = _body_indent(prop.getter, lines)
+    has_setter = prop.setter is not None
+
+    # --- Getter return annotation ---
+    actual_ret = _ann_str(prop.getter.returns)
+    expected_ret = desc.type_name
+    if actual_ret != expected_ret:
+        result.issues.append(
+            f'{loc}: getter annotation '
+            f'-> {actual_ret} (expected {expected_ret})'
+        )
+        ds, de = _def_line_range(prop.getter, lines)
+        def_indent = lines[ds][
+            : len(lines[ds]) - len(lines[ds].lstrip())
+        ]
+        new_def = (
+            f'{def_indent}def {prop.name}'
+            f'(self) -> {expected_ret}:\n'
+        )
+        result.edits.append(Edit(ds, de, new_def))
+
+    # --- Getter docstring ---
+    expected_doc = _getter_docstring(
+        desc.description,
+        desc.units,
+        desc.type_name,
+        has_setter,
+        indent,
+    )
+    actual_doc_text, doc_s, doc_e = _docstring_range(
+        prop.getter
+    )
+
+    if actual_doc_text is None:
+        result.issues.append(
+            f'{loc}: getter missing docstring'
+        )
+        _, def_end = _def_line_range(prop.getter, lines)
+        result.edits.append(
+            Edit(def_end, def_end, expected_doc)
+        )
+    else:
+        actual_src = ''.join(lines[doc_s:doc_e])
+        if _normalize(actual_src) != _normalize(
+            expected_doc
+        ):
+            result.issues.append(
+                f'{loc}: getter docstring '
+                'does not match template'
+            )
+            result.edits.append(
+                Edit(doc_s, doc_e, expected_doc)
+            )
+
+    # --- Setter ---
+    if prop.setter is None:
+        return
+
+    # Setter def-line annotations
+    setter_args = prop.setter.args.args
+    setter_param = (
+        setter_args[1].arg
+        if len(setter_args) >= 2
+        else 'value'
+    )
+    expected_ann = _SETTER_ANN[desc.type_name]
+
+    actual_val_ann = None
+    if (
+        len(setter_args) >= 2
+        and setter_args[1].annotation
+    ):
+        actual_val_ann = _ann_str(
+            setter_args[1].annotation
+        )
+
+    actual_ret_ann = _ann_str(prop.setter.returns)
+
+    if (
+        actual_val_ann != expected_ann
+        or actual_ret_ann != 'None'
+    ):
+        parts: list[str] = []
+        if actual_val_ann != expected_ann:
+            parts.append(
+                f'value: {actual_val_ann} '
+                f'(expected {expected_ann})'
+            )
+        if actual_ret_ann != 'None':
+            parts.append(
+                f'return: {actual_ret_ann} '
+                '(expected None)'
+            )
+        result.issues.append(
+            f'{loc}: setter annotation '
+            f'— {", ".join(parts)}'
+        )
+
+        ds, de = _def_line_range(prop.setter, lines)
+        def_indent = lines[ds][
+            : len(lines[ds]) - len(lines[ds].lstrip())
+        ]
+        new_def = (
+            f'{def_indent}def {prop.name}'
+            f'(self, {setter_param}: '
+            f'{expected_ann}) -> None:\n'
+        )
+        result.edits.append(Edit(ds, de, new_def))
+
+    # Setter docstring — should not exist
+    setter_doc_text, sd_s, sd_e = _docstring_range(
+        prop.setter
+    )
+    if setter_doc_text is not None:
+        result.issues.append(
+            f'{loc}: setter has docstring '
+            '(should have none)'
+        )
+        result.edits.append(Edit(sd_s, sd_e, ''))
+
+
+# ---------------------------------------------------------
+# Apply edits
+# ---------------------------------------------------------
+
+
+def _apply_edits(
+    lines: list[str],
+    edits: list[Edit],
+) -> list[str]:
+    """Apply edits bottom-up to preserve line numbers."""
+    sorted_edits = sorted(
+        edits, key=lambda e: e.start, reverse=True
+    )
+    result = list(lines)
+    for edit in sorted_edits:
+        new_lines = edit.new_text.splitlines(keepends=True)
+        result[edit.start : edit.end] = new_lines
+    return result
+
+
+# ---------------------------------------------------------
+# Entry point
+# ---------------------------------------------------------
+
+
+def _collect_py_files(paths: list[str]) -> list[Path]:
+    """Resolve paths to a sorted list of .py files.
+
+    Each entry can be a directory (recursively globbed)
+    or a single .py file.  When *paths* is empty,
+    defaults to ``_SRC_ROOT``.
+    """
+    if not paths:
+        return sorted(_SRC_ROOT.rglob('*.py'))
+
+    result: list[Path] = []
+    for raw in paths:
+        p = Path(raw).resolve()
+        if p.is_dir():
+            result.extend(p.rglob('*.py'))
+        elif p.is_file() and p.suffix == '.py':
+            result.append(p)
+    return sorted(set(result))
+
+
+def main() -> int:
+    """Run param-consistency check or fix."""
+    parser = argparse.ArgumentParser(
+        description=(
+            'Parameter / property consistency: '
+            'docstrings and type hints.'
+        ),
+    )
+    parser.add_argument(
+        'paths',
+        nargs='*',
+        help=(
+            'Directories or .py files to scan '
+            '(default: src/easydiffraction/)'
+        ),
+    )
+    group = parser.add_mutually_exclusive_group()
+    group.add_argument(
+        '--check',
+        action='store_true',
+        help='Validate consistency (default)',
+    )
+    group.add_argument(
+        '--fix',
+        action='store_true',
+        help='Auto-fix docstrings and type hints',
+    )
+    args = parser.parse_args()
+
+    py_files = _collect_py_files(args.paths)
+    repo_root = Path(__file__).resolve().parents[1]
+    total_issues = 0
+    total_fixed = 0
+    files_touched = 0
+
+    for path in py_files:
+        result = _analyze_file(path)
+        if not result.issues:
+            continue
+
+        try:
+            rel = path.relative_to(repo_root)
+        except ValueError:
+            rel = path
+
+        if args.fix:
+            source_lines = path.read_text(
+                encoding='utf-8'
+            ).splitlines(keepends=True)
+            fixed_lines = _apply_edits(
+                source_lines, result.edits
+            )
+            path.write_text(
+                ''.join(fixed_lines), encoding='utf-8'
+            )
+            count = len(result.issues)
+            total_fixed += count
+            files_touched += 1
+            print(
+                f'📝 {rel}: fixed {count} issue(s)'
+            )
+        else:
+            for issue in result.issues:
+                print(f'  ❌ {rel}: {issue}')
+            total_issues += len(result.issues)
+
+    # Summary
+    print()
+    if args.fix:
+        print(
+            f'✅ Fixed {total_fixed} issue(s) '
+            f'in {files_touched} file(s).'
+        )
+        return 0
+    if total_issues:
+        print(
+            f'❌ {total_issues} consistency '
+            'issue(s) found.'
+        )
+        return 1
+    print('✅ All properties match the template.')
+    return 0
+
+
+if __name__ == '__main__':
+    sys.exit(main())
diff --git a/tools/test_scripts.py b/tools/test_scripts.py
index 327bafd2..e24b28e2 100644
--- a/tools/test_scripts.py
+++ b/tools/test_scripts.py
@@ -1,3 +1,5 @@
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
+# SPDX-License-Identifier: BSD-3-Clause
 """Test runner for tutorial scripts in the 'tutorials' directory.
 
 This test discovers and executes all Python scripts located under the
@@ -16,15 +18,13 @@
 
 import pytest
 
-# Mark this module as 'integration' so it's excluded by default
-# (see pytest.ini)
-pytestmark = pytest.mark.integration
-
 _repo_root = Path(__file__).resolve().parents[1]
 _src_root = _repo_root / 'src'
 
 # Discover tutorial scripts, excluding temporary checkpoint files
-TUTORIALS = [p for p in Path('tutorials').rglob('*.py') if '.ipynb_checkpoints' not in p.parts]
+TUTORIALS = [
+    p for p in Path('docs/docs/tutorials').rglob('*.py') if '.ipynb_checkpoints' not in p.parts
+]
 
 
 @pytest.mark.parametrize('script_path', TUTORIALS)
diff --git a/tools/update_docs_assets.py b/tools/update_docs_assets.py
new file mode 100644
index 00000000..b274e038
--- /dev/null
+++ b/tools/update_docs_assets.py
@@ -0,0 +1,91 @@
+"""
+Update documentation assets from the assets-branding repository.
+
+This script fetches branding assets (logos, icons, images) from the
+easyscience/assets-branding GitHub repository and copies them to the
+appropriate locations in the documentation directory.
+"""
+
+import shutil
+from pathlib import Path
+
+import pooch
+
+# Configuration: Define what to fetch and where to copy
+GITHUB_REPO = 'easyscience/assets-branding'
+GITHUB_BRANCH = 'master'
+BASE_URL = f'https://raw.githubusercontent.com/{GITHUB_REPO}/refs/heads/{GITHUB_BRANCH}'
+PROJECT_NAME = 'easydiffraction'
+
+# Mapping of source files to destination paths
+# Format: "source_path_in_repo": "destination_path_in_project"
+ASSETS_MAP = {
+    # Logos
+    f'{PROJECT_NAME}/logos/dark.svg': 'docs/docs/assets/images/logo_dark.svg',
+    f'{PROJECT_NAME}/logos/light.svg': 'docs/docs/assets/images/logo_light.svg',
+    # Favicon
+    f'{PROJECT_NAME}/icons/color.png': 'docs/docs/assets/images/favicon.png',
+    # Icon overrides
+    f'{PROJECT_NAME}/icons/bw.svg': f'docs/overrides/.icons/{PROJECT_NAME}.svg',
+    'easyscience-org/icons/eso-icon_bw.svg': 'docs/overrides/.icons/easyscience.svg',
+}
+
+
+def fetch_and_copy_asset(
+    source_path: str,
+    dest_path: str,
+    cache_dir: Path,
+) -> None:
+    """
+    Fetch an asset from GitHub and copy it to the destination.
+
+    Args:
+        source_path: Path to the file in the GitHub repository
+        dest_path: Destination path in the project
+        cache_dir: Directory to cache downloaded files
+    """
+    url = f'{BASE_URL}/{source_path}'
+
+    # Create a unique cache filename based on source path
+    cache_filename = source_path.replace('/', '_')
+
+    # Download file using pooch
+    file_path = pooch.retrieve(
+        url=url,
+        known_hash=None,  # Skip hash verification
+        path=cache_dir,
+        fname=cache_filename,
+    )
+
+    # Create destination directory if it doesn't exist
+    dest = Path(dest_path)
+    dest.parent.mkdir(parents=True, exist_ok=True)
+
+    # Copy the file to destination
+    shutil.copy2(file_path, dest)
+    print(f'Copied {file_path} -> {dest_path}')
+
+
+def main():
+    """Main function to update all documentation assets."""
+    print('📥 Updating documentation assets...')
+    print(f'   Repository: {GITHUB_REPO}')
+    print(f'   Branch: {GITHUB_BRANCH}\n')
+
+    # Use a temporary cache directory
+    cache_dir = Path.home() / '.cache' / GITHUB_REPO
+    cache_dir.mkdir(parents=True, exist_ok=True)
+
+    # Fetch and copy each asset
+    for source_path, dest_path in ASSETS_MAP.items():
+        try:
+            fetch_and_copy_asset(source_path, dest_path, cache_dir)
+            print()
+        except Exception as e:
+            print(f'❌ Failed to fetch {source_path}: {e}')
+
+    print('\n✅ Documentation assets updated successfully!')
+
+
+if __name__ == '__main__':
+    main()
diff --git a/tools/update_github_labels.py b/tools/update_github_labels.py
new file mode 100644
index 00000000..84de575e
--- /dev/null
+++ b/tools/update_github_labels.py
@@ -0,0 +1,341 @@
+# SPDX-FileCopyrightText: 2026 EasyScience contributors <https://github.com/easyscience>
+# SPDX-License-Identifier: BSD-3-Clause
+"""Set/update GitHub labels for current or specified easyscience
+repository.
+
+Requires:
+  - gh CLI installed
+  - gh auth login completed
+
+Usage:
+  python update_github_labels.py
+  python update_github_labels.py --dry-run
+  python update_github_labels.py --repo easyscience/my-repo
+  python update_github_labels.py --repo easyscience/my-repo --dry-run
+"""
+
+from __future__ import annotations
+
+import argparse
+import json
+import shlex
+import subprocess  # noqa: S404
+import sys
+from dataclasses import dataclass
+
+EASYSCIENCE_ORG = 'easyscience'
+
+
+# Data structures
+
+
+@dataclass(frozen=True)
+class Label:
+    """A GitHub label with name, color, and description."""
+
+    name: str
+    color: str
+    description: str = ''
+
+
+@dataclass(frozen=True)
+class LabelRename:
+    """Mapping from old label name to new label name."""
+
+    old: str
+    new: str
+
+
+class Colors:
+    """Hex color codes for label groups."""
+
+    SCOPE = 'd73a4a'
+    MAINTAINER = '0e8a16'
+    PRIORITY = 'fbca04'
+    BOT = '5319e7'
+
+
+LABEL_RENAMES = [
+    # Default GitHub labels to rename (if they exist)
+    LabelRename('bug', '[scope] bug'),
+    LabelRename('documentation', '[scope] documentation'),
+    LabelRename('duplicate', '[maintainer] duplicate'),
+    LabelRename('enhancement', '[scope] enhancement'),
+    LabelRename('good first issue', '[maintainer] good first issue'),
+    LabelRename('help wanted', '[maintainer] help wanted'),
+    LabelRename('invalid', '[maintainer] invalid'),
+    LabelRename('question', '[maintainer] question'),
+    LabelRename('wontfix', '[maintainer] wontfix'),
+    # Custom label renames (if they exist)
+    LabelRename('[bot] pull request', '[bot] release'),
+]
+
+LABELS = [
+    # Scope labels
+    Label(
+        '[scope] bug',
+        Colors.SCOPE,
+        'Bug report or fix (major.minor.PATCH)',
+    ),
+    Label(
+        '[scope] documentation',
+        Colors.SCOPE,
+        'Documentation only changes (major.minor.patch.POST)',
+    ),
+    Label(
+        '[scope] enhancement',
+        Colors.SCOPE,
+        'Adds/improves features (major.MINOR.patch)',
+    ),
+    Label(
+        '[scope] maintenance',
+        Colors.SCOPE,
+        'Code/tooling cleanup, no feature or bugfix (major.minor.PATCH)',
+    ),
+    Label(
+        '[scope] significant',
+        Colors.SCOPE,
+        'Breaking or major changes (MAJOR.minor.patch)',
+    ),
+    Label(
+        '[scope] ⚠️ label needed',
+        Colors.SCOPE,
+        'Automatically added to issues and PRs without a [scope] label',
+    ),
+    # Maintainer labels
+    Label(
+        '[maintainer] duplicate',
+        Colors.MAINTAINER,
+        'Already reported or submitted',
+    ),
+    Label(
+        '[maintainer] good first issue',
+        Colors.MAINTAINER,
+        'Good entry-level issue for newcomers',
+    ),
+    Label(
+        '[maintainer] help wanted',
+        Colors.MAINTAINER,
+        'Needs additional help to resolve or implement',
+    ),
+    Label(
+        '[maintainer] invalid',
+        Colors.MAINTAINER,
+        'Invalid, incorrect or outdated',
+    ),
+    Label(
+        '[maintainer] question',
+        Colors.MAINTAINER,
+        'Needs clarification, discussion, or more information',
+    ),
+    Label(
+        '[maintainer] wontfix',
+        Colors.MAINTAINER,
+        'Will not be fixed or continued',
+    ),
+    # Priority labels
+    Label(
+        '[priority] lowest',
+        Colors.PRIORITY,
+        'Very low urgency',
+    ),
+    Label(
+        '[priority] low',
+        Colors.PRIORITY,
+        'Low importance',
+    ),
+    Label(
+        '[priority] medium',
+        Colors.PRIORITY,
+        'Normal/default priority',
+    ),
+    Label(
+        '[priority] high',
+        Colors.PRIORITY,
+        'Should be prioritized soon',
+    ),
+    Label(
+        '[priority] highest',
+        Colors.PRIORITY,
+        'Urgent. Needs attention ASAP',
+    ),
+    Label(
+        '[priority] ⚠️ label needed',
+        Colors.PRIORITY,
+        'Automatically added to issues without a [priority] label',
+    ),
+    # Bot label
+    Label(
+        '[bot] release',
+        Colors.BOT,
+        'Automated release PR. Excluded from changelog/versioning',
+    ),
+    Label(
+        '[bot] backmerge',
+        Colors.BOT,
+        'Automated backmerge master → develop failed due to conflicts',
+    ),
+]
+
+
+# Helpers
+
+
+@dataclass(frozen=True)
+class CmdResult:
+    """Result of a shell command execution."""
+
+    returncode: int
+    stdout: str
+    stderr: str
+
+
+def run_cmd(
+    args: list[str],
+    *,
+    dry_run: bool,
+    check: bool = True,
+) -> CmdResult:
+    """Run a command (or print it in dry-run mode)."""
+    cmd_str = ' '.join(shlex.quote(a) for a in args)
+
+    if dry_run:
+        print(f'  [dry-run] {cmd_str}')
+        return CmdResult(0, '', '')
+
+    proc = subprocess.run(
+        args=args,
+        text=True,
+        capture_output=True,
+    )
+    result = CmdResult(
+        proc.returncode,
+        proc.stdout.strip(),
+        proc.stderr.strip(),
+    )
+
+    if check and proc.returncode != 0:
+        raise RuntimeError(f'Command failed ({proc.returncode}): {cmd_str}\n{result.stderr}')
+
+    return result
+
+
+def get_current_repo() -> str:
+    """Get the current repository name in 'owner/repo' format."""
+    result = subprocess.run(
+        args=[
+            'gh',
+            'repo',
+            'view',
+            '--json',
+            'nameWithOwner',
+        ],
+        text=True,
+        capture_output=True,
+        check=True,
+    )
+    data = json.loads(result.stdout)
+    name_with_owner = data.get('nameWithOwner', '')
+
+    if '/' not in name_with_owner:
+        raise RuntimeError('Could not determine current repository name')
+
+    return name_with_owner
+
+
+def rename_label(
+    repo: str,
+    rename: LabelRename,
+    *,
+    dry_run: bool,
+) -> None:
+    """Rename a label, silently skipping if it doesn't exist."""
+    result = run_cmd(
+        args=[
+            'gh',
+            'label',
+            'edit',
+            rename.old,
+            '--name',
+            rename.new,
+            '--repo',
+            repo,
+        ],
+        dry_run=dry_run,
+        check=False,
+    )
+
+    if dry_run or result.returncode == 0:
+        print(f'  Rename: {rename.old!r} → {rename.new!r}')
+    else:
+        print(f'  Skip (not found): {rename.old!r}')
+
+
+def upsert_label(
+    repo: str,
+    label: Label,
+    *,
+    dry_run: bool,
+) -> None:
+    """Create or update a label."""
+    run_cmd(
+        [
+            'gh',
+            'label',
+            'create',
+            label.name,
+            '--color',
+            label.color,
+            '--description',
+            label.description,
+            '--force',
+            '--repo',
+            repo,
+        ],
+        dry_run=dry_run,
+    )
+    print(f'  Upsert: {label.name!r}')
+
+
+# Main
+
+
+def main() -> int:
+    """Entry point: parse arguments and sync labels."""
+    parser = argparse.ArgumentParser(description='Sync GitHub labels for easyscience repos')
+    parser.add_argument(
+        '--repo',
+        help='Target repository (owner/name)',
+    )
+    parser.add_argument(
+        '--dry-run',
+        action='store_true',
+        help='Print actions without applying changes',
+    )
+    args = parser.parse_args()
+
+    repo = args.repo or get_current_repo()
+    org = repo.split('/')[0]
+
+    if org.lower() != EASYSCIENCE_ORG:
+        print(f"Error: repository '{repo}' is not under '{EASYSCIENCE_ORG}'", file=sys.stderr)
+        return 2
+
+    print(f'Repository: {repo}')
+    if args.dry_run:
+        print('Mode: DRY-RUN (no changes will be made)\n')
+
+    print('\nRenaming default labels...')
+    for rename in LABEL_RENAMES:
+        rename_label(repo, rename, dry_run=args.dry_run)
+
+    print('\nUpserting labels...')
+    for label in LABELS:
+        upsert_label(repo, label, dry_run=args.dry_run)
+
+    print('\nDone.')
+    return 0
+
+
+if __name__ == '__main__':
+    raise SystemExit(main())
diff --git a/tools/update_spdx.py b/tools/update_spdx.py
deleted file mode 100644
index df9236af..00000000
--- a/tools/update_spdx.py
+++ /dev/null
@@ -1,109 +0,0 @@
-"""Update or insert SPDX headers in Python files.
-
-- Ensures SPDX-FileCopyrightText has the current year.
-- Ensures SPDX-License-Identifier is set to BSD-3-Clause.
-"""
-
-import datetime
-import fnmatch
-import re
-from pathlib import Path
-
-CURRENT_YEAR = datetime.datetime.now().year
-COPYRIGHT_TEXT = (
-    f'# SPDX-FileCopyrightText: 2021-{CURRENT_YEAR} EasyDiffraction contributors '
-    '<https://github.com/easyscience/diffraction>'
-)
-LICENSE_TEXT = '# SPDX-License-Identifier: BSD-3-Clause'
-
-# Patterns to exclude from SPDX header updates (vendored code)
-EXCLUDE_PATTERNS = [
-    '*/_vendored/jupyter_dark_detect/*',
-]
-
-
-def should_exclude(file_path: Path) -> bool:
-    """Check if a file should be excluded from SPDX header updates."""
-    path_str = str(file_path)
-    return any(fnmatch.fnmatch(path_str, pattern) for pattern in EXCLUDE_PATTERNS)
-
-
-def update_spdx_header(file_path: Path):
-    # Use Path.open to satisfy lint rule PTH123.
-    with file_path.open('r', encoding='utf-8') as f:
-        original_lines = f.readlines()
-
-    # Regexes for SPDX lines
-    copy_re = re.compile(r'^#\s*SPDX-FileCopyrightText:.*$')
-    lic_re = re.compile(r'^#\s*SPDX-License-Identifier:.*$')
-
-    # 1) Preserve any leading shebang / coding cookie lines
-    prefix = []
-    body_start = 0
-    if original_lines:
-        # Shebang line like "#!/usr/bin/env python3"
-        if original_lines[0].startswith('#!'):
-            prefix.append(original_lines[0])
-            body_start = 1
-        # PEP 263 coding cookie on first or second line
-        # e.g. "# -*- coding: utf-8 -*-" or "# coding: utf-8"
-        for _ in range(2):  # at most one more line to inspect
-            if body_start < len(original_lines):
-                line = original_lines[body_start]
-                if re.match(r'^#.*coding[:=]\s*[-\w.]+', line):
-                    prefix.append(line)
-                    body_start += 1
-                else:
-                    break
-
-    # 2) Work on the remaining body
-    body = original_lines[body_start:]
-
-    # Remove any existing SPDX lines anywhere in the body
-    body = [ln for ln in body if not (copy_re.match(ln) or lic_re.match(ln))]
-
-    # Strip leading blank lines in the body so header is tight
-    while body and not body[0].strip():
-        body.pop(0)
-
-    # 3) Build canonical SPDX block: two lines + exactly one blank
-    spdx_block = [
-        COPYRIGHT_TEXT + '\n',
-        LICENSE_TEXT + '\n',
-        '\n',
-    ]
-
-    # 4) New content: prefix + SPDX + body
-    new_lines = prefix + spdx_block + body
-
-    # 5) Normalize: collapse any extra blank lines immediately after
-    #    LICENSE to exactly one. This keeps the script idempotent.
-    # Find the index of LICENSE we just inserted (prefix may be 0, 1,
-    # or 2 lines)
-    lic_idx = len(prefix) + 1  # spdx_block[1] is the license line
-    # Ensure exactly one blank line after LICENSE
-    # Remove all blank lines after lic_idx, then insert a single blank.
-    j = lic_idx + 1
-    # Remove any number of blank lines following
-    while j < len(new_lines) and not new_lines[j].strip():
-        new_lines.pop(j)
-    # Insert exactly one blank line at this position
-    new_lines.insert(j, '\n')
-
-    with file_path.open('w', encoding='utf-8') as f:
-        f.writelines(new_lines)
-
-
-def main():
-    """Recursively update or insert SPDX headers in all Python files
-    under the 'src' and 'tests' directories.
-    """
-    for base_dir in ('src', 'tests'):
-        for py_file in Path(base_dir).rglob('*.py'):
-            if should_exclude(py_file):
-                continue
-            update_spdx_header(py_file)
-
-
-if __name__ == '__main__':
-    main()
diff --git a/tutorials/data/ed-3.xye b/tutorials/data/ed-3.xye
deleted file mode 100644
index 0b9b63e3..00000000
--- a/tutorials/data/ed-3.xye
+++ /dev/null
@@ -1,3099 +0,0 @@
-#  2theta intensity   su
-   10.00    167.00   12.60
-   10.05    157.00   12.50
-   10.10    187.00   13.30
-   10.15    197.00   14.00
-   10.20    164.00   12.50
-   10.25    171.00   13.00
-   10.30    190.00   13.40
-   10.35    182.00   13.50
-   10.40    166.00   12.60
-   10.45    203.00   14.30
-   10.50    156.00   12.20
-   10.55    190.00   13.90
-   10.60    175.00   13.00
-   10.65    161.00   12.90
-   10.70    187.00   13.50
-   10.75    166.00   13.10
-   10.80    171.00   13.00
-   10.85    177.00   13.60
-   10.90    159.00   12.60
-   10.95    184.00   13.90
-   11.00    160.00   12.60
-   11.05    182.00   13.90
-   11.10    167.00   13.00
-   11.15    169.00   13.40
-   11.20    186.00   13.70
-   11.25    167.00   13.30
-   11.30    169.00   13.10
-   11.35    159.00   13.10
-   11.40    170.00   13.20
-   11.45    179.00   13.90
-   11.50    178.00   13.50
-   11.55    188.00   14.20
-   11.60    176.00   13.50
-   11.65    196.00   14.60
-   11.70    182.00   13.70
-   11.75    183.00   14.00
-   11.80    195.00   14.10
-   11.85    144.00   12.40
-   11.90    178.00   13.50
-   11.95    175.00   13.70
-   12.00    200.00   14.20
-   12.05    157.00   12.90
-   12.10    195.00   14.00
-   12.15    164.00   13.10
-   12.20    188.00   13.70
-   12.25    168.00   13.10
-   12.30    191.00   13.70
-   12.35    178.00   13.40
-   12.40    182.00   13.30
-   12.45    174.00   13.30
-   12.50    171.00   12.90
-   12.55    174.00   13.20
-   12.60    184.00   13.30
-   12.65    164.00   12.80
-   12.70    166.00   12.50
-   12.75    177.00   13.20
-   12.80    174.00   12.80
-   12.85    187.00   13.50
-   12.90    183.00   13.10
-   12.95    187.00   13.50
-   13.00    175.00   12.80
-   13.05    165.00   12.70
-   13.10    177.00   12.80
-   13.15    182.00   13.30
-   13.20    195.00   13.50
-   13.25    163.00   12.60
-   13.30    180.00   12.90
-   13.35    171.00   12.90
-   13.40    182.00   13.00
-   13.45    179.00   13.10
-   13.50    161.00   12.20
-   13.55    156.00   12.30
-   13.60    197.00   13.50
-   13.65    167.00   12.70
-   13.70    180.00   12.80
-   13.75    182.00   13.20
-   13.80    176.00   12.70
-   13.85    153.00   12.10
-   13.90    179.00   12.80
-   13.95    156.00   12.30
-   14.00    187.00   13.10
-   14.05    170.00   12.80
-   14.10    185.00   13.00
-   14.15    180.00   13.20
-   14.20    167.00   12.40
-   14.25    159.00   12.40
-   14.30    152.00   11.80
-   14.35    173.00   13.00
-   14.40    169.00   12.50
-   14.45    185.00   13.40
-   14.50    168.00   12.40
-   14.55    193.00   13.70
-   14.60    177.00   12.80
-   14.65    161.00   12.50
-   14.70    180.00   12.90
-   14.75    165.00   12.60
-   14.80    178.00   12.80
-   14.85    157.00   12.30
-   14.90    163.00   12.30
-   14.95    143.00   11.70
-   15.00    155.00   11.90
-   15.05    168.00   12.80
-   15.10    160.00   12.10
-   15.15    155.00   12.20
-   15.20    203.00   13.70
-   15.25    164.00   12.60
-   15.30    158.00   12.10
-   15.35    152.00   12.10
-   15.40    173.00   12.60
-   15.45    160.00   12.50
-   15.50    172.00   12.60
-   15.55    164.00   12.60
-   15.60    163.00   12.30
-   15.65    173.00   13.00
-   15.70    177.00   12.80
-   15.75    184.00   13.40
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