diff --git a/cmd/entire/cli/transcript/compact/compact.go b/cmd/entire/cli/transcript/compact/compact.go index 5d07a1c6a3..db98d3699f 100644 --- a/cmd/entire/cli/transcript/compact/compact.go +++ b/cmd/entire/cli/transcript/compact/compact.go @@ -176,9 +176,10 @@ func compactJSONL(content []byte, opts MetadataFields) ([]byte, error) { func compactJSONLWith(content []byte, opts MetadataFields, preprocess linePreprocessor) ([]byte, error) { base := newTranscriptLine(opts) + preserveThinking := opts.Agent == "claude-code" // Pass 1: parse all lines into intermediate entries. - entries, err := parseJSONLEntries(content, preprocess) + entries, err := parseJSONLEntries(content, preprocess, preserveThinking) if err != nil { return nil, err } @@ -283,7 +284,7 @@ func appendLine(result *[]byte, line transcriptLine) { // parseJSONLEntries parses all JSONL lines into intermediate entries, // filtering dropped types and malformed lines. -func parseJSONLEntries(content []byte, preprocess linePreprocessor) ([]parsedEntry, error) { +func parseJSONLEntries(content []byte, preprocess linePreprocessor, preserveThinking bool) ([]parsedEntry, error) { reader := bufio.NewReader(bytes.NewReader(content)) var entries []parsedEntry @@ -294,7 +295,7 @@ func parseJSONLEntries(content []byte, preprocess linePreprocessor) ([]parsedEnt } if len(bytes.TrimSpace(lineBytes)) > 0 { - if e, ok := parseLine(lineBytes, preprocess); ok { + if e, ok := parseLine(lineBytes, preprocess, preserveThinking); ok { entries = append(entries, e) } } @@ -309,7 +310,7 @@ func parseJSONLEntries(content []byte, preprocess linePreprocessor) ([]parsedEnt // parseLine converts a single JSONL line into a parsedEntry. // Returns ok=false for dropped/malformed lines. -func parseLine(lineBytes []byte, preprocess linePreprocessor) (parsedEntry, bool) { +func parseLine(lineBytes []byte, preprocess linePreprocessor, preserveThinking bool) (parsedEntry, bool) { var raw map[string]json.RawMessage if err := json.Unmarshal(lineBytes, &raw); err != nil { return parsedEntry{}, false @@ -336,7 +337,7 @@ func parseLine(lineBytes []byte, preprocess linePreprocessor) (parsedEntry, bool if msg != nil { e.id = unquote(msg["id"]) if contentRaw, ok := msg["content"]; ok { - e.content = stripAssistantContent(contentRaw) + e.content = stripAssistantContent(contentRaw, preserveThinking) } e.inputTokens, e.outputTokens = extractUsageTokens(msg) } @@ -620,7 +621,7 @@ func extractUserContent(contentRaw json.RawMessage) userContent { return uc } -func stripAssistantContent(contentRaw json.RawMessage) json.RawMessage { +func stripAssistantContent(contentRaw json.RawMessage, preserveThinking bool) json.RawMessage { var str string if json.Unmarshal(contentRaw, &str) == nil { return contentRaw @@ -635,7 +636,19 @@ func stripAssistantContent(contentRaw json.RawMessage) json.RawMessage { for _, block := range blocks { blockType := unquote(block["type"]) - if blockType == "thinking" || blockType == "redacted_thinking" { + if blockType == "redacted_thinking" { + continue + } + + if preserveThinking && blockType == "thinking" { + stripped := make(map[string]json.RawMessage) + copyField(stripped, block, "type") + copyField(stripped, block, "thinking") + result = append(result, stripped) + continue + } + + if blockType == "thinking" { continue } diff --git a/cmd/entire/cli/transcript/compact/compact_test.go b/cmd/entire/cli/transcript/compact/compact_test.go index 8750f767f5..7a7fd09573 100644 --- a/cmd/entire/cli/transcript/compact/compact_test.go +++ b/cmd/entire/cli/transcript/compact/compact_test.go @@ -52,7 +52,7 @@ func TestCompact_AssistantStripping(t *testing.T) { `) expected := []string{ - `{"v":1,"agent":"claude-code","cli_version":"0.5.1","type":"assistant","ts":"2026-01-01T00:00:01Z","id":"msg-1","content":[{"type":"text","text":"Here's my answer."},{"type":"tool_use","id":"tu-1","name":"Bash","input":{"command":"ls"}},{"type":"image","source":{"type":"base64","media_type":"image/png","data":"abc"}}]}`, + `{"v":1,"agent":"claude-code","cli_version":"0.5.1","type":"assistant","ts":"2026-01-01T00:00:01Z","id":"msg-1","content":[{"thinking":"hmm...","type":"thinking"},{"type":"text","text":"Here's my answer."},{"type":"tool_use","id":"tu-1","name":"Bash","input":{"command":"ls"}},{"type":"image","source":{"type":"base64","media_type":"image/png","data":"abc"}}]}`, } result, err := Compact(redact.AlreadyRedacted(input), defaultOpts) @@ -65,16 +65,18 @@ func TestCompact_AssistantStripping(t *testing.T) { func TestCompact_AssistantThinkingOnly(t *testing.T) { t.Parallel() - // Assistant lines with only thinking content should be dropped entirely - // (streaming intermediates that carry no user-visible content). input := []byte(`{"type":"assistant","timestamp":"2026-01-01T00:00:01Z","requestId":"req-1","message":{"id":"msg-1","content":[{"type":"thinking","thinking":"hmm..."}]}} `) + expected := []string{ + `{"v":1,"agent":"claude-code","cli_version":"0.5.1","type":"assistant","ts":"2026-01-01T00:00:01Z","id":"msg-1","content":[{"thinking":"hmm...","type":"thinking"}]}`, + } + result, err := Compact(redact.AlreadyRedacted(input), defaultOpts) if err != nil { t.Fatalf("unexpected error: %v", err) } - assertJSONLines(t, result, nil) + assertJSONLines(t, result, expected) } func TestCompact_UserWithToolResult(t *testing.T) { @@ -217,7 +219,7 @@ func TestCompact_StreamingFragmentTokenMerge(t *testing.T) { `) expected := []string{ - `{"v":1,"agent":"claude-code","cli_version":"0.5.1","type":"assistant","ts":"t2","id":"m1","input_tokens":100,"output_tokens":42,"content":[{"type":"text","text":"done"}]}`, + `{"v":1,"agent":"claude-code","cli_version":"0.5.1","type":"assistant","ts":"t2","id":"m1","input_tokens":100,"output_tokens":42,"content":[{"thinking":"hmm","type":"thinking"},{"type":"text","text":"done"}]}`, } result, err := Compact(redact.AlreadyRedacted(input), defaultOpts) @@ -366,7 +368,7 @@ func TestCompact_FullFixture_WithTruncation(t *testing.T) { // to inline into, so user text is emitted and tool result is lost. expected := []string{ `{"v":1,"agent":"claude-code","cli_version":"0.5.1","type":"user","ts":"2026-01-01T00:01:00Z","content":[{"text":"now fix the bug"}]}`, - `{"v":1,"agent":"claude-code","cli_version":"0.5.1","type":"assistant","ts":"2026-01-01T00:01:01Z","id":"msg-2","content":[{"type":"text","text":"I found the issue."},{"type":"tool_use","id":"tu-2","name":"Edit","input":{"file_path":"/repo/bug.go","old_string":"bad","new_string":"good"}}]}`, + `{"v":1,"agent":"claude-code","cli_version":"0.5.1","type":"assistant","ts":"2026-01-01T00:01:01Z","id":"msg-2","content":[{"thinking":"analyzing the bug...","type":"thinking"},{"type":"text","text":"I found the issue."},{"type":"tool_use","id":"tu-2","name":"Edit","input":{"file_path":"/repo/bug.go","old_string":"bad","new_string":"good"}}]}`, } result, err := Compact(redact.AlreadyRedacted([]byte(fixtureFullJSONL)), opts) @@ -382,13 +384,13 @@ func TestCompact_FullFixture_NoTruncation(t *testing.T) { expected := []string{ // Line 0: user "hello" `{"v":1,"agent":"claude-code","cli_version":"0.5.1","type":"user","ts":"2026-01-01T00:00:00Z","content":[{"text":"hello"}]}`, - // Line 1: assistant (thinking stripped, caller stripped, tool result inlined from line 3 with file metadata) - `{"v":1,"agent":"claude-code","cli_version":"0.5.1","type":"assistant","ts":"2026-01-01T00:00:01Z","id":"msg-1","content":[{"type":"text","text":"Hi there!"},{"type":"tool_use","id":"tu-1","name":"Bash","input":{"command":"ls"},"result":{"output":"file1.txt\nfile2.txt","status":"success","file":{"filePath":"/repo/file1.txt","numLines":10}}}]}`, + // Line 1: assistant (thinking preserved, caller stripped, tool result inlined from line 3 with file metadata) + `{"v":1,"agent":"claude-code","cli_version":"0.5.1","type":"assistant","ts":"2026-01-01T00:00:01Z","id":"msg-1","content":[{"thinking":"let me think...","type":"thinking"},{"type":"text","text":"Hi there!"},{"type":"tool_use","id":"tu-1","name":"Bash","input":{"command":"ls"},"result":{"output":"file1.txt\nfile2.txt","status":"success","file":{"filePath":"/repo/file1.txt","numLines":10}}}]}`, // Line 2: progress — dropped // Line 3: user with tool_result — inlined above, user text emitted `{"v":1,"agent":"claude-code","cli_version":"0.5.1","type":"user","ts":"2026-01-01T00:01:00Z","content":[{"text":"now fix the bug"}]}`, - // Line 4: assistant (thinking + redacted_thinking stripped) - `{"v":1,"agent":"claude-code","cli_version":"0.5.1","type":"assistant","ts":"2026-01-01T00:01:01Z","id":"msg-2","content":[{"type":"text","text":"I found the issue."},{"type":"tool_use","id":"tu-2","name":"Edit","input":{"file_path":"/repo/bug.go","old_string":"bad","new_string":"good"}}]}`, + // Line 4: assistant (thinking preserved, redacted_thinking stripped) + `{"v":1,"agent":"claude-code","cli_version":"0.5.1","type":"assistant","ts":"2026-01-01T00:01:01Z","id":"msg-2","content":[{"thinking":"analyzing the bug...","type":"thinking"},{"type":"text","text":"I found the issue."},{"type":"tool_use","id":"tu-2","name":"Edit","input":{"file_path":"/repo/bug.go","old_string":"bad","new_string":"good"}}]}`, // Lines 5-6: file-history-snapshot, system — dropped } diff --git a/cmd/entire/cli/transcript/compact/gemini.go b/cmd/entire/cli/transcript/compact/gemini.go index 8f2dcb5a73..d1d502eb50 100644 --- a/cmd/entire/cli/transcript/compact/gemini.go +++ b/cmd/entire/cli/transcript/compact/gemini.go @@ -56,10 +56,16 @@ type geminiMessage struct { Timestamp string `json:"timestamp"` Type string `json:"type"` Content json.RawMessage `json:"content"` + Thoughts []geminiThought `json:"thoughts"` ToolCalls []geminiToolCall `json:"toolCalls"` Tokens *geminiTokens `json:"tokens"` } +type geminiThought struct { + Subject string `json:"subject"` + Description string `json:"description"` +} + // geminiTokens holds token usage from a Gemini message. type geminiTokens struct { Input int `json:"input"` @@ -152,7 +158,28 @@ func emitGeminiUser(result *[]byte, base transcriptLine, msg geminiMessage, ts j // emitGeminiAssistant produces a single assistant line. The content array // contains text blocks (from content field) and tool_use blocks (from toolCalls). func emitGeminiAssistant(result *[]byte, base transcriptLine, msg geminiMessage, ts json.RawMessage) { - content := make([]map[string]json.RawMessage, 0, 1+len(msg.ToolCalls)) + content := make([]map[string]json.RawMessage, 0, len(msg.Thoughts)+1+len(msg.ToolCalls)) + + for _, thought := range msg.Thoughts { + thinkingText := geminiThoughtText(thought) + if thinkingText == "" { + continue + } + + blockType, err := json.Marshal("thinking") + if err != nil { + continue + } + thinking, err := json.Marshal(thinkingText) + if err != nil { + continue + } + + content = append(content, map[string]json.RawMessage{ + "type": blockType, + "thinking": thinking, + }) + } if contentText := geminiContentText(msg.Content); contentText != "" { b, err := json.Marshal(transcript.ContentTypeText) @@ -214,6 +241,22 @@ func emitGeminiAssistant(result *[]byte, base transcriptLine, msg geminiMessage, appendLine(result, line) } +func geminiThoughtText(thought geminiThought) string { + subject := strings.TrimSpace(thought.Subject) + description := strings.TrimSpace(thought.Description) + + switch { + case subject != "" && description != "": + return subject + "\n\n" + description + case description != "": + return description + case subject != "": + return subject + default: + return "" + } +} + // geminiContentText extracts the text from a Gemini content field which may // be either a plain JSON string or an array of content parts (each with a // "text" field). Returns the concatenated text or "" if content is absent. diff --git a/cmd/entire/cli/transcript/compact/gemini_test.go b/cmd/entire/cli/transcript/compact/gemini_test.go index 166e8d973e..cc77c6a151 100644 --- a/cmd/entire/cli/transcript/compact/gemini_test.go +++ b/cmd/entire/cli/transcript/compact/gemini_test.go @@ -61,6 +61,34 @@ func TestCompact_GeminiStartLine(t *testing.T) { }) } +func TestCompact_GeminiThoughtOnlyAssistant(t *testing.T) { + t.Parallel() + + input := []byte(`{ + "sessionId": "s1", + "messages": [ + { + "id":"m1", + "timestamp":"2026-01-01T00:00:01Z", + "type":"gemini", + "content":"", + "thoughts":[{"subject":"Planning","description":"I should inspect the project first."}], + "tokens":{"input":10,"output":5} + } + ] + }`) + + expected := []string{ + `{"v":1,"agent":"gemini-cli","cli_version":"0.5.1","type":"assistant","ts":"2026-01-01T00:00:01Z","id":"m1","input_tokens":10,"output_tokens":5,"content":[{"thinking":"Planning\n\nI should inspect the project first.","type":"thinking"}]}`, + } + + result, err := Compact(redact.AlreadyRedacted(input), agentOpts("gemini-cli")) + if err != nil { + t.Fatalf("unexpected error: %v", err) + } + assertJSONLines(t, result, expected) +} + func TestIsGeminiFormat(t *testing.T) { t.Parallel() diff --git a/cmd/entire/cli/transcript/compact/testdata/claude_expected.jsonl b/cmd/entire/cli/transcript/compact/testdata/claude_expected.jsonl index 872bb89e86..f2a73bd8a0 100644 --- a/cmd/entire/cli/transcript/compact/testdata/claude_expected.jsonl +++ b/cmd/entire/cli/transcript/compact/testdata/claude_expected.jsonl @@ -1,5 +1,5 @@ {"v":1,"agent":"claude-code","cli_version":"0.5.1","type":"user","ts":"2026-03-18T00:03:14.992Z","content":[{"id":"1a789a48-ac83-46b6-a746-90ff5bb455ad","text":"I need to revert a change to my last commit message"}]} -{"v":1,"agent":"claude-code","cli_version":"0.5.1","type":"assistant","ts":"2026-03-18T00:03:19.789Z","id":"msg_01A8w8vJNhp54SKt6N4Pdg6W","input_tokens":3,"output_tokens":102,"content":[{"text":"What would you like the new commit message to be? The last commit on this branch is:\n\n```\n42e6c78 test\n```\n\nTo change it, I can run `git commit --amend -m \"new message\"`. What message would you like?","type":"text"}]} +{"v":1,"agent":"claude-code","cli_version":"0.5.1","type":"assistant","ts":"2026-03-18T00:03:19.789Z","id":"msg_01A8w8vJNhp54SKt6N4Pdg6W","input_tokens":3,"output_tokens":102,"content":[{"thinking":"","type":"thinking"},{"text":"What would you like the new commit message to be? The last commit on this branch is:\n\n```\n42e6c78 test\n```\n\nTo change it, I can run `git commit --amend -m \"new message\"`. What message would you like?","type":"text"}]} {"v":1,"agent":"claude-code","cli_version":"0.5.1","type":"user","ts":"2026-03-18T00:05:10.762Z","content":[{"id":"156e4210-ce44-45e0-a2bf-76416bd3f82b","text":"No I want to revert the extra amendment to the commit message where the new entire-checkpoint text was added"}]} {"v":1,"agent":"claude-code","cli_version":"0.5.1","type":"assistant","ts":"2026-03-18T00:05:14.398Z","id":"msg_01XBRjv2YCFQs34eaLK7w9XF","input_tokens":3,"output_tokens":113,"content":[{"text":"\n\nLet me check the current full commit message first.","type":"text"},{"id":"toolu_01NFoPKsjrNsBZ4PJ4r8uSF2","input":{"command":"git log -1 --format=\"%B\"","description":"Show full last commit message"},"name":"Bash","result":{"output":"test\n\nEntire-Checkpoint: ecf782729563\nEntire-Checkpoint: c81467b72ca0","status":"success"},"type":"tool_use"}]} {"v":1,"agent":"claude-code","cli_version":"0.5.1","type":"assistant","ts":"2026-03-18T00:05:18.719Z","id":"msg_01YDHWjQkYdHk5EjK4amSHy7","input_tokens":1,"output_tokens":39,"content":[{"text":"I see — the commit message has `Entire-Checkpoint` lines appended. What should the message be after reverting? Just `test` with no checkpoint lines?","type":"text"}]} diff --git a/cmd/entire/cli/transcript/compact/testdata/claude_expected2.jsonl b/cmd/entire/cli/transcript/compact/testdata/claude_expected2.jsonl index bd5918809c..8b22f70dcc 100644 --- a/cmd/entire/cli/transcript/compact/testdata/claude_expected2.jsonl +++ b/cmd/entire/cli/transcript/compact/testdata/claude_expected2.jsonl @@ -1,13 +1,13 @@ {"v":1,"agent":"claude-code","cli_version":"0.5.1","type":"user","ts":"2026-03-27T08:00:16.991Z","content":[{"id":"298dfe1a-fcfd-445d-a715-990622c86af9","text":"can you take a look at the attribution logic, can you explain me again why we don't track deleted lines"}]} {"v":1,"agent":"claude-code","cli_version":"0.5.1","type":"user","ts":"2026-03-27T08:02:17.715Z","content":[{"id":"298dfe1a-fcfd-445d-a715-990622c86af9","text":"[Request interrupted by user]"}]} {"v":1,"agent":"claude-code","cli_version":"0.5.1","type":"user","ts":"2026-03-27T08:02:19.591Z","content":[{"id":"74d91337-cd74-4fbe-812f-eb4f912dba55","text":"can you take a look at the attribution logic, can you explain me again why we don't track deleted lines"}]} -{"v":1,"agent":"claude-code","cli_version":"0.5.1","type":"assistant","ts":"2026-03-27T08:02:36.120Z","id":"msg_0123Xd2tGxDJpD2Br9P5qy1m","input_tokens":3,"output_tokens":44,"content":[{"id":"toolu_01JHpHWTGPZgG15BjyaJ8RAq","input":{"pattern":"attribution|attrib","type":"go","output_mode":"files_with_matches"},"name":"Grep","result":{"output":"Found 16 files\ne2e/tests/attribution_test.go\ncmd/entire/cli/strategy/manual_commit_hooks.go\ncmd/entire/cli/strategy/manual_commit_test.go\ncmd/entire/cli/strategy/manual_commit_condensation.go\ncmd/entire/cli/hooks_git_cmd.go\ncmd/entire/cli/checkpoint/committed.go\ncmd/entire/cli/checkpoint/checkpoint.go\nperf/span.go\ncmd/entire/cli/session/state.go\ncmd/entire/cli/strategy/manual_commit_attribution_test.go\ncmd/entire/cli/strategy/manual_commit_staging_test.go\ncmd/entire/cli/strategy/manual_commit_git.go\ncmd/entire/cli/strategy/manual_commit_attribution.go\ncmd/entire/cli/integration_test/attribution_test.go\ne2e/testutil/metadata.go\ncmd/entire/cli/logging/logger.go","status":"success","matchCount":16},"type":"tool_use"}]} +{"v":1,"agent":"claude-code","cli_version":"0.5.1","type":"assistant","ts":"2026-03-27T08:02:36.120Z","id":"msg_0123Xd2tGxDJpD2Br9P5qy1m","input_tokens":3,"output_tokens":44,"content":[{"thinking":"","type":"thinking"},{"id":"toolu_01JHpHWTGPZgG15BjyaJ8RAq","input":{"pattern":"attribution|attrib","type":"go","output_mode":"files_with_matches"},"name":"Grep","result":{"output":"Found 16 files\ne2e/tests/attribution_test.go\ncmd/entire/cli/strategy/manual_commit_hooks.go\ncmd/entire/cli/strategy/manual_commit_test.go\ncmd/entire/cli/strategy/manual_commit_condensation.go\ncmd/entire/cli/hooks_git_cmd.go\ncmd/entire/cli/checkpoint/committed.go\ncmd/entire/cli/checkpoint/checkpoint.go\nperf/span.go\ncmd/entire/cli/session/state.go\ncmd/entire/cli/strategy/manual_commit_attribution_test.go\ncmd/entire/cli/strategy/manual_commit_staging_test.go\ncmd/entire/cli/strategy/manual_commit_git.go\ncmd/entire/cli/strategy/manual_commit_attribution.go\ncmd/entire/cli/integration_test/attribution_test.go\ne2e/testutil/metadata.go\ncmd/entire/cli/logging/logger.go","status":"success","matchCount":16},"type":"tool_use"}]} {"v":1,"agent":"claude-code","cli_version":"0.5.1","type":"assistant","ts":"2026-03-27T08:02:36.747Z","id":"msg_0123Xd2tGxDJpD2Br9P5qy1m","input_tokens":3,"output_tokens":225,"content":[{"id":"toolu_016Uck53tCdExiL8RtKCVPaB","input":{"pattern":"deleted.*lines|lines.*deleted|delete.*track","type":"go","output_mode":"files_with_matches"},"name":"Grep","result":{"output":"Found 12 files\ncmd/entire/cli/integration_test/testenv.go\ncmd/entire/cli/strategy/manual_commit_rewind.go\ncmd/entire/cli/rewind.go\ncmd/entire/cli/strategy/rewind_test.go\ncmd/entire/cli/strategy/common.go\ncmd/entire/cli/git_operations.go\ncmd/entire/cli/state_test.go\ncmd/entire/cli/git_operations_test.go\ncmd/entire/cli/strategy/manual_commit_attribution.go\ncmd/entire/cli/strategy/hard_reset_test.go\ncmd/entire/cli/integration_test/attribution_test.go\ncmd/entire/cli/integration_test/manual_commit_untracked_files_test.go","status":"success","matchCount":12},"type":"tool_use"}]} {"v":1,"agent":"claude-code","cli_version":"0.5.1","type":"assistant","ts":"2026-03-27T08:02:43.550Z","id":"msg_013Mzwr9pk5BoxBnHvjB7DHr","input_tokens":1,"output_tokens":82,"content":[{"id":"toolu_01VkLV6Y6SnqJewF7prLBDJm","input":{"file_path":"/repo/cli/cmd/entire/cli/strategy/manual_commit_attribution.go"},"name":"Read","result":{"output":" 1→package strategy\n 2→\n 3→import (\n 4→\t\"context\"\n 5→\t\"log/slog\"\n 6→\t\"slices\"\n 7→\t\"strings\"\n 8→\t\"time\"\n 9→\n 10→\t\"github.com/entireio/cli/cmd/entire/cli/checkpoint\"\n 11→\t\"github.com/entireio/cli/cmd/entire/cli/gitops\"\n 12→\t\"github.com/entireio/cli/cmd/entire/cli/logging\"\n 13→\t\"github.com/go-git/go-git/v6/plumbing/object\"\n 14→\t\"github.com/sergi/go-diff/diffmatchpatch\"\n 15→)\n 16→\n 17→// getAllChangedFiles returns all files that changed between the attribution base\n 18→// and HEAD. When commit hashes and repoDir are provided, uses fast git diff-tree CLI;\n 19→// otherwise falls back to go-git tree walk (used by CondenseSessionByID / doctor command).\n 20→func getAllChangedFiles(ctx context.Context, baseTree, headTree *object.Tree, repoDir, baseCommitHash, headCommitHash string) ([]string, error) {\n 21→\t// Fast path: use git diff-tree when commit hashes are available\n 22→\tif baseCommitHash != \"\" \u0026\u0026 headCommitHash != \"\" {\n 23→\t\treturn gitops.DiffTreeFileList(ctx, repoDir, baseCommitHash, headCommitHash) //nolint:wrapcheck // Propagating gitops error\n 24→\t}\n 25→\n 26→\t// Slow path: go-git tree walk (CondenseSessionByID fallback)\n 27→\treturn getAllChangedFilesBetweenTreesSlow(ctx, baseTree, headTree)\n 28→}\n 29→\n 30→// getAllChangedFilesBetweenTreesSlow returns a list of all files that differ between two trees.\n 31→// This is the slow fallback path using go-git tree walks, used only when commit hashes\n 32→// are not available (e.g., CondenseSessionByID / doctor command).\n 33→func getAllChangedFilesBetweenTreesSlow(ctx context.Context, tree1, tree2 *object.Tree) ([]string, error) {\n 34→\tif tree1 == nil \u0026\u0026 tree2 == nil {\n 35→\t\treturn nil, nil\n 36→\t}\n 37→\n 38→\ttree1Hashes := make(map[string]string)\n 39→\ttree2Hashes := make(map[string]string)\n 40→\n 41→\tif tree1 != nil {\n 42→\t\tif err := tree1.Files().ForEach(func(f *object.File) error {\n 43→\t\t\tif err := ctx.Err(); err != nil {\n 44→\t\t\t\treturn err //nolint:wrapcheck // Propagating context cancellation\n 45→\t\t\t}\n 46→\t\t\ttree1Hashes[f.Name] = f.Hash.String()\n 47→\t\t\treturn nil\n 48→\t\t}); err != nil {\n 49→\t\t\treturn nil, err //nolint:wrapcheck // Propagating context/iteration error\n 50→\t\t}\n 51→\t}\n 52→\n 53→\tif tree2 != nil {\n 54→\t\tif err := tree2.Files().ForEach(func(f *object.File) error {\n 55→\t\t\tif err := ctx.Err(); err != nil {\n 56→\t\t\t\treturn err //nolint:wrapcheck // Propagating context cancellation\n 57→\t\t\t}\n 58→\t\t\ttree2Hashes[f.Name] = f.Hash.String()\n 59→\t\t\treturn nil\n 60→\t\t}); err != nil {\n 61→\t\t\treturn nil, err //nolint:wrapcheck // Propagating context/iteration error\n 62→\t\t}\n 63→\t}\n 64→\n 65→\tvar changed []string\n 66→\n 67→\tfor path, hash1 := range tree1Hashes {\n 68→\t\tif hash2, exists := tree2Hashes[path]; !exists || hash1 != hash2 {\n 69→\t\t\tchanged = append(changed, path)\n 70→\t\t}\n 71→\t}\n 72→\n 73→\tfor path := range tree2Hashes {\n 74→\t\tif _, exists := tree1Hashes[path]; !exists {\n 75→\t\t\tchanged = append(changed, path)\n 76→\t\t}\n 77→\t}\n 78→\n 79→\treturn changed, nil\n 80→}\n 81→\n 82→// getFileContent retrieves the content of a file from a tree.\n 83→// Returns empty string if the file doesn't exist, can't be read, or is a binary file.\n 84→//\n 85→// Binary files are silently excluded from attribution calculations because line-based\n 86→// diffing doesn't apply to binary content. This means binary files (images, compiled\n 87→// binaries, etc.) won't appear in attribution metrics even if they were added or modified.\n 88→// This is intentional - attribution measures code contributions via line counting,\n 89→// which only makes sense for text files.\n 90→//\n 91→// Uses go-git's IsBinary() which implements git's binary detection algorithm.\n 92→//\n 93→// TODO: Consider tracking binary file counts separately (e.g., BinaryFilesChanged field)\n 94→// to provide visibility into non-text file modifications.\n 95→func getFileContent(tree *object.Tree, path string) string {\n 96→\tif tree == nil {\n 97→\t\treturn \"\"\n 98→\t}\n 99→\n 100→\tfile, err := tree.File(path)\n 101→\tif err != nil {\n 102→\t\treturn \"\"\n 103→\t}\n 104→\n 105→\t// Use git's binary detection algorithm\n 106→\tisBinary, err := file.IsBinary()\n 107→\tif err != nil || isBinary {\n 108→\t\treturn \"\"\n 109→\t}\n 110→\n 111→\tcontent, err := file.Contents()\n 112→\tif err != nil {\n 113→\t\treturn \"\"\n 114→\t}\n 115→\n 116→\treturn content\n 117→}\n 118→\n 119→// diffLines compares two strings and returns line-level diff stats.\n 120→// Returns (unchanged, added, removed) line counts.\n 121→func diffLines(checkpointContent, committedContent string) (unchanged, added, removed int) {\n 122→\t// Handle edge cases\n 123→\tif checkpointContent == committedContent {\n 124→\t\treturn countLinesStr(committedContent), 0, 0\n 125→\t}\n 126→\tif checkpointContent == \"\" {\n 127→\t\treturn 0, countLinesStr(committedContent), 0\n 128→\t}\n 129→\tif committedContent == \"\" {\n 130→\t\treturn 0, 0, countLinesStr(checkpointContent)\n 131→\t}\n 132→\n 133→\tdmp := diffmatchpatch.New()\n 134→\n 135→\t// Convert to line-based diff using DiffLinesToChars/DiffCharsToLines pattern\n 136→\ttext1, text2, lineArray := dmp.DiffLinesToChars(checkpointContent, committedContent)\n 137→\tdiffs := dmp.DiffMain(text1, text2, false)\n 138→\tdiffs = dmp.DiffCharsToLines(diffs, lineArray)\n 139→\n 140→\tfor _, d := range diffs {\n 141→\t\tlines := countLinesStr(d.Text)\n 142→\t\tswitch d.Type {\n 143→\t\tcase diffmatchpatch.DiffEqual:\n 144→\t\t\tunchanged += lines\n 145→\t\tcase diffmatchpatch.DiffInsert:\n 146→\t\t\tadded += lines\n 147→\t\tcase diffmatchpatch.DiffDelete:\n 148→\t\t\tremoved += lines\n 149→\t\t}\n 150→\t}\n 151→\n 152→\treturn unchanged, added, removed\n 153→}\n 154→\n 155→// countLinesStr returns the number of lines in a string.\n 156→// An empty string has 0 lines. A string without newlines has 1 line.\n 157→// This is used for both file content and diff text segments.\n 158→func countLinesStr(content string) int {\n 159→\tif content == \"\" {\n 160→\t\treturn 0\n 161→\t}\n 162→\tlines := strings.Count(content, \"\\n\")\n 163→\t// If content doesn't end with newline, add 1 for the last line\n 164→\tif !strings.HasSuffix(content, \"\\n\") {\n 165→\t\tlines++\n 166→\t}\n 167→\treturn lines\n 168→}\n 169→\n 170→// CalculateAttributionWithAccumulated computes final attribution using accumulated prompt data.\n 171→// This provides more accurate attribution than tree-only comparison because it captures\n 172→// user edits that happened between checkpoints (which would otherwise be mixed into the\n 173→// checkpoint snapshots).\n 174→//\n 175→// The calculation:\n 176→// 1. Sum user edits from PromptAttributions (captured at each prompt start)\n 177→// 2. Add user edits after the final checkpoint (shadow → head diff)\n 178→// 3. Calculate agent lines from base → shadow\n 179→// 4. Estimate user self-modifications vs agent modifications using per-file tracking\n 180→// 5. Compute percentages\n 181→//\n 182→// attributionBaseCommit and headCommitHash are optional commit hashes for fast non-agent\n 183→// file detection via git diff-tree. When empty, falls back to go-git tree walk.\n 184→//\n 185→// Note: Binary files (detected by null bytes) are silently excluded from attribution\n 186→// calculations since line-based diffing only applies to text files.\n 187→//\n 188→// See docs/architecture/attribution.md for details on the per-file tracking approach.\n 189→func CalculateAttributionWithAccumulated(\n 190→\tctx context.Context,\n 191→\tbaseTree *object.Tree,\n 192→\tshadowTree *object.Tree,\n 193→\theadTree *object.Tree,\n 194→\tfilesTouched []string,\n 195→\tpromptAttributions []PromptAttribution,\n 196→\trepoDir string,\n 197→\tattributionBaseCommit string,\n 198→\theadCommitHash string,\n 199→) *checkpoint.InitialAttribution {\n 200→\tif len(filesTouched) == 0 {\n 201→\t\treturn nil\n 202→\t}\n 203→\n 204→\t// Sum accumulated user lines from prompt attributions\n 205→\t// Also aggregate per-file user additions for accurate modification tracking\n 206→\tvar accumulatedUserAdded, accumulatedUserRemoved int\n 207→\taccumulatedUserAddedPerFile := make(map[string]int)\n 208→\tfor _, pa := range promptAttributions {\n 209→\t\taccumulatedUserAdded += pa.UserLinesAdded\n 210→\t\taccumulatedUserRemoved += pa.UserLinesRemoved\n 211→\t\t// Merge per-file data from all prompt attributions\n 212→\t\tfor filePath, added := range pa.UserAddedPerFile {\n 213→\t\t\taccumulatedUserAddedPerFile[filePath] += added\n 214→\t\t}\n 215→\t}\n 216→\n 217→\t// Calculate attribution for agent-touched files\n 218→\t// IMPORTANT: shadowTree is a snapshot of the worktree at checkpoint time,\n 219→\t// which includes both agent work AND accumulated user edits (to agent-touched files).\n 220→\t// So base→shadow diff = (agent work + accumulated user work to these files).\n 221→\tvar totalAgentAndUserWork int\n 222→\tvar postCheckpointUserAdded, postCheckpointUserRemoved int\n 223→\tpostCheckpointUserRemovedPerFile := make(map[string]int)\n 224→\n 225→\tfor _, filePath := range filesTouched {\n 226→\t\tbaseContent := getFileContent(baseTree, filePath)\n 227→\t\tshadowContent := getFileContent(shadowTree, filePath)\n 228→\t\theadContent := getFileContent(headTree, filePath)\n 229→\n 230→\t\t// Total work in shadow: base → shadow (agent + accumulated user work for this file)\n 231→\t\t_, workAdded, _ := diffLines(baseContent, shadowContent)\n 232→\t\ttotalAgentAndUserWork += workAdded\n 233→\n 234→\t\t// Post-checkpoint user edits: shadow → head (only post-checkpoint edits for this file)\n 235→\t\t_, postUserAdded, postUserRemoved := diffLines(shadowContent, headContent)\n 236→\t\tpostCheckpointUserAdded += postUserAdded\n 237→\t\tpostCheckpointUserRemoved += postUserRemoved\n 238→\n 239→\t\t// Track per-file removals for self-modification estimation\n 240→\t\tif postUserRemoved \u003e 0 {\n 241→\t\t\tpostCheckpointUserRemovedPerFile[filePath] = postUserRemoved\n 242→\t\t}\n 243→\t}\n 244→\n 245→\t// Calculate total user edits to non-agent files (files not in filesTouched)\n 246→\t// These files are not in the shadow tree, so base→head captures ALL their user edits\n 247→\tallChangedFiles, err := getAllChangedFiles(ctx, baseTree, headTree, repoDir, attributionBaseCommit, headCommitHash)\n 248→\tif err != nil {\n 249→\t\tlogging.Warn(logging.WithComponent(ctx, \"attribution\"),\n 250→\t\t\t\"attribution: failed to enumerate changed files\",\n 251→\t\t\tslog.String(\"error\", err.Error()),\n 252→\t\t)\n 253→\t\treturn nil\n 254→\t}\n 255→\tvar allUserEditsToNonAgentFiles int\n 256→\tfor _, filePath := range allChangedFiles {\n 257→\t\tif slices.Contains(filesTouched, filePath) {\n 258→\t\t\tcontinue // Skip agent-touched files\n 259→\t\t}\n 260→\n 261→\t\tbaseContent := getFileContent(baseTree, filePath)\n 262→\t\theadContent := getFileContent(headTree, filePath)\n 263→\t\t_, userAdded, _ := diffLines(baseContent, headContent)\n 264→\t\tallUserEditsToNonAgentFiles += userAdded\n 265→\t}\n 266→\n 267→\t// Separate accumulated edits by file type using per-file tracking data.\n 268→\t// Only count changes to files that are actually committed:\n 269→\t// - Agent-touched files (filesTouched)\n 270→\t// - Non-agent files that appear in the commit (base→head diff)\n 271→\t// Files not in either set are worktree-only changes (e.g., .claude/settings.json)\n 272→\t// that should not affect attribution.\n 273→\tcommittedNonAgentSet := make(map[string]struct{}, len(allChangedFiles))\n 274→\tfor _, f := range allChangedFiles {\n 275→\t\tif !slices.Contains(filesTouched, f) {\n 276→\t\t\tcommittedNonAgentSet[f] = struct{}{}\n 277→\t\t}\n 278→\t}\n 279→\n 280→\tvar accumulatedToAgentFiles, accumulatedToCommittedNonAgentFiles int\n 281→\tfor filePath, added := range accumulatedUserAddedPerFile {\n 282→\t\tif slices.Contains(filesTouched, filePath) {\n 283→\t\t\taccumulatedToAgentFiles += added\n 284→\t\t} else if _, ok := committedNonAgentSet[filePath]; ok {\n 285→\t\t\taccumulatedToCommittedNonAgentFiles += added\n 286→\t\t}\n 287→\t\t// else: file not committed (worktree-only), excluded from attribution\n 288→\t}\n 289→\n 290→\t// Agent work = (base→shadow for agent files) - (accumulated user edits to agent files only)\n 291→\ttotalAgentAdded := max(0, totalAgentAndUserWork-accumulatedToAgentFiles)\n 292→\n 293→\t// Post-checkpoint edits to non-agent files = total edits - accumulated portion (never negative)\n 294→\tpostToNonAgentFiles := max(0, allUserEditsToNonAgentFiles-accumulatedToCommittedNonAgentFiles)\n 295→\n 296→\t// Total user contribution = accumulated (committed files only) + post-checkpoint edits\n 297→\trelevantAccumulatedUser := accumulatedToAgentFiles + accumulatedToCommittedNonAgentFiles\n 298→\ttotalUserAdded := relevantAccumulatedUser + postCheckpointUserAdded + postToNonAgentFiles\n 299→\t// TODO: accumulatedUserRemoved also includes removals from uncommitted files,\n 300→\t// but we don't have per-file tracking for removals yet. In practice, removals\n 301→\t// from uncommitted files are rare and the impact is minor (could slightly reduce\n 302→\t// totalCommitted via pureUserRemoved). Add UserRemovedPerFile if this becomes an issue.\n 303→\ttotalUserRemoved := accumulatedUserRemoved + postCheckpointUserRemoved\n 304→\n 305→\t// Estimate modified lines (user changed existing lines)\n 306→\t// Lines that were both added and removed are treated as modifications.\n 307→\ttotalHumanModified := min(totalUserAdded, totalUserRemoved)\n 308→\n 309→\t// Estimate user self-modifications using per-file tracking (see docs/architecture/attribution.md)\n 310→\t// When a user removes lines from a file, assume they're removing their own lines first (LIFO).\n 311→\t// Only after exhausting their own additions should we count removals as targeting agent lines.\n 312→\tuserSelfModified := estimateUserSelfModifications(accumulatedUserAddedPerFile, postCheckpointUserRemovedPerFile)\n 313→\n 314→\t// humanModifiedAgent = modifications that targeted agent lines (not user's own lines)\n 315→\thumanModifiedAgent := max(0, totalHumanModified-userSelfModified)\n 316→\n 317→\t// Remaining modifications are user self-modifications (user edited their own code)\n 318→\t// These should NOT be subtracted from agent lines\n 319→\tpureUserAdded := totalUserAdded - totalHumanModified\n 320→\tpureUserRemoved := totalUserRemoved - totalHumanModified\n 321→\n 322→\t// Total net additions = agent additions + pure user additions - pure user removals\n 323→\t// This reconstructs the base → head diff from our tracked changes.\n 324→\t// Note: This measures \"net new lines added to the codebase\" not total file size.\n 325→\t// pureUserRemoved represents agent lines that the user deleted, so we subtract them.\n 326→\ttotalCommitted := totalAgentAdded + pureUserAdded - pureUserRemoved\n 327→\tif totalCommitted \u003c= 0 {\n 328→\t\t// Fallback for delete-only commits or when removals exceed additions\n 329→\t\t// Note: If both are 0 (deletion-only commit where agent added nothing),\n 330→\t\t// totalCommitted will be 0 and percentage will be 0. This is expected -\n 331→\t\t// the attribution percentage is only meaningful for commits that add code.\n 332→\t\ttotalCommitted = max(0, totalAgentAdded)\n 333→\t}\n 334→\n 335→\t// Calculate agent lines actually in the commit (excluding removed and modified)\n 336→\t// Agent added lines, but user removed some and modified others.\n 337→\t// Only subtract modifications that targeted AGENT lines (humanModifiedAgent),\n 338→\t// not user self-modifications.\n 339→\t// Clamp to 0 to handle cases where user removed/modified more than agent added.\n 340→\tagentLinesInCommit := max(0, totalAgentAdded-pureUserRemoved-humanModifiedAgent)\n 341→\n 342→\t// Calculate percentage\n 343→\tvar agentPercentage float64\n 344→\tif totalCommitted \u003e 0 {\n 345→\t\tagentPercentage = float64(agentLinesInCommit) / float64(totalCommitted) * 100\n 346→\t}\n 347→\n 348→\treturn \u0026checkpoint.InitialAttribution{\n 349→\t\tCalculatedAt: time.Now().UTC(),\n 350→\t\tAgentLines: agentLinesInCommit,\n 351→\t\tHumanAdded: pureUserAdded,\n 352→\t\tHumanModified: totalHumanModified, // Total modifications (for reporting)\n 353→\t\tHumanRemoved: pureUserRemoved,\n 354→\t\tTotalCommitted: totalCommitted,\n 355→\t\tAgentPercentage: agentPercentage,\n 356→\t}\n 357→}\n 358→\n 359→// estimateUserSelfModifications estimates how many removed lines were the user's own additions.\n 360→// Uses LIFO assumption: when a user removes lines from a file, they likely remove their own\n 361→// recent additions before touching agent lines.\n 362→//\n 363→// See docs/architecture/attribution.md for the rationale behind this heuristic.\n 364→func estimateUserSelfModifications(\n 365→\taccumulatedUserAddedPerFile map[string]int,\n 366→\tpostCheckpointUserRemovedPerFile map[string]int,\n 367→) int {\n 368→\tvar selfModified int\n 369→\tfor filePath, removed := range postCheckpointUserRemovedPerFile {\n 370→\t\tuserAddedToFile := accumulatedUserAddedPerFile[filePath]\n 371→\t\t// User can only self-modify up to what they previously added\n 372→\t\tselfModified += min(removed, userAddedToFile)\n 373→\t}\n 374→\treturn selfModified\n 375→}\n 376→\n 377→// CalculatePromptAttribution computes line-level attribution at the start of a prompt.\n 378→// This captures user edits since the last checkpoint BEFORE the agent makes changes.\n 379→//\n 380→// Parameters:\n 381→// - baseTree: the tree at session start (the base commit)\n 382→// - lastCheckpointTree: the tree from the previous checkpoint (nil if first checkpoint)\n 383→// - worktreeFiles: map of file path → current worktree content for files that changed\n 384→// - checkpointNumber: which checkpoint we're about to create (1-indexed)\n 385→//\n 386→// Returns the attribution data to store in session state. For checkpoint 1 (when\n 387→// lastCheckpointTree is nil), AgentLinesAdded/Removed will be 0 since there's no\n 388→// previous checkpoint to measure cumulative agent work against.\n 389→//\n 390→// Note: Binary files (detected by null bytes) in reference trees are silently excluded\n 391→// from attribution calculations since line-based diffing only applies to text files.\n 392→func CalculatePromptAttribution(\n 393→\tbaseTree *object.Tree,\n 394→\tlastCheckpointTree *object.Tree,\n 395→\tworktreeFiles map[string]string,\n 396→\tcheckpointNumber int,\n 397→) PromptAttribution {\n 398→\tresult := PromptAttribution{\n 399→\t\tCheckpointNumber: checkpointNumber,\n 400→\t\tUserAddedPerFile: make(map[string]int),\n 401→\t}\n 402→\n 403→\tif len(worktreeFiles) == 0 {\n 404→\t\treturn result\n 405→\t}\n 406→\n 407→\t// Determine reference tree for user changes (last checkpoint or base)\n 408→\treferenceTree := lastCheckpointTree\n 409→\tif referenceTree == nil {\n 410→\t\treferenceTree = baseTree\n 411→\t}\n 412→\n 413→\tfor filePath, worktreeContent := range worktreeFiles {\n 414→\t\treferenceContent := getFileContent(referenceTree, filePath)\n 415→\t\tbaseContent := getFileContent(baseTree, filePath)\n 416→\n 417→\t\t// User changes: diff(reference, worktree)\n 418→\t\t// These are changes since the last checkpoint that the agent didn't make\n 419→\t\t_, userAdded, userRemoved := diffLines(referenceContent, worktreeContent)\n 420→\t\tresult.UserLinesAdded += userAdded\n 421→\t\tresult.UserLinesRemoved += userRemoved\n 422→\n 423→\t\t// Track per-file user additions for accurate modification tracking.\n 424→\t\t// This enables distinguishing user self-modifications from agent modifications.\n 425→\t\tif userAdded \u003e 0 {\n 426→\t\t\tresult.UserAddedPerFile[filePath] = userAdded\n 427→\t\t}\n 428→\n 429→\t\t// Agent lines so far: diff(base, lastCheckpoint)\n 430→\t\t// Only calculate if we have a previous checkpoint\n 431→\t\tif lastCheckpointTree != nil {\n 432→\t\t\tcheckpointContent := getFileContent(lastCheckpointTree, filePath)\n 433→\t\t\t_, agentAdded, agentRemoved := diffLines(baseContent, checkpointContent)\n 434→\t\t\tresult.AgentLinesAdded += agentAdded\n 435→\t\t\tresult.AgentLinesRemoved += agentRemoved\n 436→\t\t}\n 437→\t}\n 438→\n 439→\treturn result\n 440→}\n 441→","status":"success","file":{"filePath":"/repo/cli/cmd/entire/cli/strategy/manual_commit_attribution.go","numLines":441}},"type":"tool_use"}]} {"v":1,"agent":"claude-code","cli_version":"0.5.1","type":"assistant","ts":"2026-03-27T08:03:01.874Z","id":"msg_01MkdbgWnECuoADHJtqG7fxd","input_tokens":1,"output_tokens":211,"content":[{"id":"toolu_01DMPfkNZDdnBKg6EjBJHEtk","input":{"file_path":"/repo/cli/cmd/entire/cli/checkpoint/checkpoint.go","limit":80},"name":"Read","type":"tool_use"},{"id":"toolu_013Csb5iKimSj8zbCbD1sX4Z","input":{"pattern":"InitialAttribution","path":"/repo/cli/cmd/entire/cli/checkpoint/checkpoint.go","output_mode":"content","context":5},"name":"Grep","result":{"output":"276-\tTokenUsage *agent.TokenUsage\n277-\n278-\t// SessionMetrics contains hook-provided session metrics (duration, turns, context usage)\n279-\tSessionMetrics *SessionMetrics\n280-\n281:\t// InitialAttribution is line-level attribution calculated at commit time\n282-\t// comparing checkpoint tree (agent work) to committed tree (may include human edits)\n283:\tInitialAttribution *InitialAttribution\n284-\n285-\t// Summary is an optional AI-generated summary for this checkpoint.\n286-\t/ This field may be nil when:\n287-\t// - summarization is disabled in settings\n288-\t// - summary generation failed (non-blocking, logged as warning)\n--\n398-\tSessionMetrics *SessionMetrics `json:\"session_metrics,omitempty\"`\n399-\n400-\t// AI-generated summary of the checkpoint\n401-\tSummary *Summary `json:\"summary,omitempty\"`\n402-\n403:\t// InitialAttribution is line-level attribution calculated at commit time\n404:\tInitialAttribution *InitialAttribution `json:\"initial_attribution,omitempty\"`\n405-}\n406-\n407-// GetTranscriptStart returns the transcript line offset at which this checkpoint's data begins.\n408-// Returns 0 for new checkpoints (start from beginning). For data written by older CLI versions,\n409-// falls back to the deprecated TranscriptLinesAtStart field.\n--\n485-\tLine int `json:\"line,omitempty\"` // Start line number\n486-\tEndLine int `json:\"end_line,omitempty\"` // End line for ranges (optional)\n487-\tFinding string `json:\"finding\"` // What was learned\n488-}\n489-\n490:// InitialAttribution captures line-level attribution metrics at commit time.\n491-// This is a point-in-time snapshot comparing the checkpoint tree (agent work)\n492-// against the committed tree (may include human edits).\n493-//\n494-/ Attribution Metrics:\n495-// - TotalCommitted measures \"net additions\" (lines added that remain in the commit)\n--\n499-/ Deletion-Only Commits:\n500-// For commits with only deletions (no additions), TotalCommitted will be 0 and\n501-// AgentPercentage will be 0. This is by design - the percentage metric is only\n502-// meaningful for commits that add code. Deletion contributions are captured in\n503-// the HumanRemoved field but don't affect the attribution percentage.\n504:type InitialAttribution struct {\n505-\tCalculatedAt time.Time `json:\"calculated_at\"`\n506-\tAgentLines int `json:\"agent_lines\"` // Lines added by agent (base → shadow diff)\n507-\tHumanAdded int `json:\"human_added\"` // Lines added by human (excluding modifications)\n508-\tHumanModified int `json:\"human_modified\"` // Lines modified by human (estimate: min(added, removed))\n509-\tHumanRemoved int `json:\"human_removed\"` // Lines removed by human (excluding modifications)","status":"success"},"type":"tool_use"}]} -{"v":1,"agent":"claude-code","cli_version":"0.5.1","type":"assistant","ts":"2026-03-27T08:03:48.136Z","id":"msg_01BtT7Cf5RGSTgUGRPUrXnXq","input_tokens":782,"output_tokens":1177,"content":[{"text":"The attribution logic is in `cmd/entire/cli/strategy/manual_commit_attribution.go`. Here's the core reason:\n\n**Attribution answers: \"what percentage of the new code in this commit was written by the agent?\"**\n\nDeleted lines don't exist in the final commit, so there's nothing to attribute. The metric measures lines that are *present* in the committed code — you can point at a line and say \"the agent wrote this\" or \"the human wrote this,\" but you can't point at a line that isn't there.\n\nConcretely, look at line 231:\n\n```go\n_, workAdded, _ := diffLines(baseContent, shadowContent)\ntotalAgentAndUserWork += workAdded\n```\n\nThe removed count is discarded (`_`). The `totalCommitted` denominator (line 326) is defined as:\n\n```go\ntotalCommitted := totalAgentAdded + pureUserAdded - pureUserRemoved\n```\n\nThis is \"net new lines added to the codebase.\" The percentage (`agentLinesInCommit / totalCommitted`) tells you what fraction of the surviving code came from the agent.\n\n**User deletions *are* partially tracked** — `HumanRemoved` captures when a user deletes agent-written lines, which reduces `agentLinesInCommit` (line 340). But agent deletions themselves don't appear anywhere because:\n\n1. A deletion doesn't produce attributable output — there's no line in the commit to claim credit for\n2. The metric would be misleading — an agent that deletes 500 lines of dead code and adds 1 line would show as \"mostly deletions,\" which doesn't tell you anything useful about who wrote the committed code\n3. It keeps the model simple — attribution is a ratio over lines that exist, avoiding the question of how to weight added vs deleted lines\n\nThe comments on lines 499-503 make this explicit: deletion-only commits get 0% attribution, by design.\n\nThere's a `TODO` on line 93 noting that binary file changes could be tracked separately, but no equivalent TODO for deleted lines — suggesting this was a deliberate design choice rather than an oversight.","type":"text"}]} +{"v":1,"agent":"claude-code","cli_version":"0.5.1","type":"assistant","ts":"2026-03-27T08:03:48.136Z","id":"msg_01BtT7Cf5RGSTgUGRPUrXnXq","input_tokens":782,"output_tokens":1177,"content":[{"thinking":"","type":"thinking"},{"text":"The attribution logic is in `cmd/entire/cli/strategy/manual_commit_attribution.go`. Here's the core reason:\n\n**Attribution answers: \"what percentage of the new code in this commit was written by the agent?\"**\n\nDeleted lines don't exist in the final commit, so there's nothing to attribute. The metric measures lines that are *present* in the committed code — you can point at a line and say \"the agent wrote this\" or \"the human wrote this,\" but you can't point at a line that isn't there.\n\nConcretely, look at line 231:\n\n```go\n_, workAdded, _ := diffLines(baseContent, shadowContent)\ntotalAgentAndUserWork += workAdded\n```\n\nThe removed count is discarded (`_`). The `totalCommitted` denominator (line 326) is defined as:\n\n```go\ntotalCommitted := totalAgentAdded + pureUserAdded - pureUserRemoved\n```\n\nThis is \"net new lines added to the codebase.\" The percentage (`agentLinesInCommit / totalCommitted`) tells you what fraction of the surviving code came from the agent.\n\n**User deletions *are* partially tracked** — `HumanRemoved` captures when a user deletes agent-written lines, which reduces `agentLinesInCommit` (line 340). But agent deletions themselves don't appear anywhere because:\n\n1. A deletion doesn't produce attributable output — there's no line in the commit to claim credit for\n2. The metric would be misleading — an agent that deletes 500 lines of dead code and adds 1 line would show as \"mostly deletions,\" which doesn't tell you anything useful about who wrote the committed code\n3. It keeps the model simple — attribution is a ratio over lines that exist, avoiding the question of how to weight added vs deleted lines\n\nThe comments on lines 499-503 make this explicit: deletion-only commits get 0% attribution, by design.\n\nThere's a `TODO` on line 93 noting that binary file changes could be tracked separately, but no equivalent TODO for deleted lines — suggesting this was a deliberate design choice rather than an oversight.","type":"text"}]} {"v":1,"agent":"claude-code","cli_version":"0.5.1","type":"user","ts":"2026-03-27T08:07:42.783Z","content":[{"id":"55fa7ad4-dfbf-449e-a68c-8b75b5db3d7b","text":"can you look at b91ac0681ff15f2a9e583aa2e5b3958443ca984d and the corresponding checkpoint and logs in ../entire.io how the percentage / and lines came to be"}]} -{"v":1,"agent":"claude-code","cli_version":"0.5.1","type":"assistant","ts":"2026-03-27T08:07:50.948Z","id":"msg_01Y8gLFPim2evtUjPet2boKy","input_tokens":3,"output_tokens":313,"content":[{"id":"toolu_01KmGsPiv9yBB7cBGAvHZRYB","input":{"command":"cd /repo/entire.io \u0026\u0026 git log -1 --format=\"%H%n%s%n%b\" b91ac0681ff15f2a9e583aa2e5b3958443ca984d","description":"Show commit details including trailers"},"name":"Bash","result":{"output":"b91ac0681ff15f2a9e583aa2e5b3958443ca984d\nRemove unused total prop and 3 all-time API queries from repo overview\nCo-Authored-By: Claude Opus 4.6 (1M context) \u003cnoreply@anthropic.com\u003e\nEntire-Checkpoint: c14692dbdbc6","status":"success"},"type":"tool_use"},{"id":"toolu_01MF4jkAUA9nmRA9Qfvk2vKH","input":{"command":"cd /repo/entire.io \u0026\u0026 git diff --stat b91ac0681ff15f2a9e583aa2e5b3958443ca984d~1..b91ac0681ff15f2a9e583aa2e5b3958443ca984d","description":"Show files changed in the commit"},"name":"Bash","type":"tool_use"}]} +{"v":1,"agent":"claude-code","cli_version":"0.5.1","type":"assistant","ts":"2026-03-27T08:07:50.948Z","id":"msg_01Y8gLFPim2evtUjPet2boKy","input_tokens":3,"output_tokens":313,"content":[{"thinking":"","type":"thinking"},{"id":"toolu_01KmGsPiv9yBB7cBGAvHZRYB","input":{"command":"cd /repo/entire.io \u0026\u0026 git log -1 --format=\"%H%n%s%n%b\" b91ac0681ff15f2a9e583aa2e5b3958443ca984d","description":"Show commit details including trailers"},"name":"Bash","result":{"output":"b91ac0681ff15f2a9e583aa2e5b3958443ca984d\nRemove unused total prop and 3 all-time API queries from repo overview\nCo-Authored-By: Claude Opus 4.6 (1M context) \u003cnoreply@anthropic.com\u003e\nEntire-Checkpoint: c14692dbdbc6","status":"success"},"type":"tool_use"},{"id":"toolu_01MF4jkAUA9nmRA9Qfvk2vKH","input":{"command":"cd /repo/entire.io \u0026\u0026 git diff --stat b91ac0681ff15f2a9e583aa2e5b3958443ca984d~1..b91ac0681ff15f2a9e583aa2e5b3958443ca984d","description":"Show files changed in the commit"},"name":"Bash","type":"tool_use"}]} {"v":1,"agent":"claude-code","cli_version":"0.5.1","type":"assistant","ts":"2026-03-27T08:09:07.270Z","id":"msg_01C1nyhQ55GQqGUfeQu4uC8R","input_tokens":1,"output_tokens":144,"content":[{"id":"toolu_01TtKbkctTujBRNsSfazyC7f","input":{"command":"cd /repo/entire.io \u0026\u0026 git diff b91ac0681ff15f2a9e583aa2e5b3958443ca984d~1..b91ac0681ff15f2a9e583aa2e5b3958443ca984d","description":"Show full diff of the commit"},"name":"Bash","result":{"output":"diff --git a/frontend/src/domains/platform/repo-overview/components/SmallStatCard.tsx b/frontend/src/domains/platform/repo-overview/components/SmallStatCard.tsx\nindex 8218f3b82..c398aceb9 100644\n--- a/frontend/src/domains/platform/repo-overview/components/SmallStatCard.tsx\n+++ b/frontend/src/domains/platform/repo-overview/components/SmallStatCard.tsx\n@@ -158,7 +158,6 @@ function AnimatedNumber({ value, loading }: { value: number; loading?: boolean }\n \n export interface SmallStatCardProps {\n title: string\n- total: string\n current: string\n periodLabel?: string\n sparkline?: number[]\ndiff --git a/frontend/src/domains/platform/repo-overview/pages/RepoOverviewPage.tsx b/frontend/src/domains/platform/repo-overview/pages/RepoOverviewPage.tsx\nindex 596eeb086..435f24add 100644\n--- a/frontend/src/domains/platform/repo-overview/pages/RepoOverviewPage.tsx\n+++ b/frontend/src/domains/platform/repo-overview/pages/RepoOverviewPage.tsx\n@@ -109,23 +109,13 @@ export function RepoOverviewPage({\n until: end.toISOString(),\n })\n \n- // All-time totals (no date filters)\n- const { data: allTimeCommits } = useCommitStatsQuery(org, repo, {})\n- const { data: allTimeContributors } = useContributorsQuery(org, repo, {})\n- const { data: allTimePRs } = usePRStatsQuery(org, repo, {})\n-\n const ghBase = `https://github.com/${org}/${repo}`\n const trailsEnabled = repoRecord?.trails_enabled ?? false\n \n const commitsCount = commitStats?.total ?? 0\n const contributorsCount = contributors?.total_contributors ?? 0\n- const totalCommits = allTimeCommits?.total ?? 0\n- const totalContributors = allTimeContributors?.total_contributors ?? 0\n-\n const openedPRs = prStats?.opened ?? 0\n const mergedPRs = prStats?.merged ?? 0\n- const totalOpenedPRs = allTimePRs?.opened ?? 0\n- const totalMergedPRs = allTimePRs?.merged ?? 0\n \n const commitsSparkline = fillDailyCounts(commitStats?.daily, start, end)\n const contributorsSparkline = fillDailyCounts(contributors?.daily, start, end)\n@@ -135,7 +125,6 @@ export function RepoOverviewPage({\n const smallMetrics = [\n {\n title: \"Commits\",\n- total: String(totalCommits),\n current: String(commitsCount),\n periodLabel: \"added\",\n sparkline: commitsSparkline,\n@@ -144,7 +133,6 @@ export function RepoOverviewPage({\n },\n {\n title: \"Contributors\",\n- total: String(totalContributors),\n current: String(contributorsCount),\n periodLabel: \"active\",\n sparkline: contributorsSparkline,\n@@ -152,7 +140,6 @@ export function RepoOverviewPage({\n },\n {\n title: \"Opened PRs\",\n- total: String(totalOpenedPRs),\n current: String(openedPRs),\n periodLabel: \"opened\",\n sparkline: openedPRsSparkline,\n@@ -160,7 +147,6 @@ export function RepoOverviewPage({\n },\n {\n title: \"Merged PRs\",\n- total: String(totalMergedPRs),\n current: String(mergedPRs),\n periodLabel: \"merged\",\n sparkline: mergedPRsSparkline,","status":"success"},"type":"tool_use"}]} {"v":1,"agent":"claude-code","cli_version":"0.5.1","type":"assistant","ts":"2026-03-27T08:09:15.217Z","id":"msg_01GRLjhWiNN457hup5fDxpmW","input_tokens":1,"output_tokens":268,"content":[{"text":"Now let me look at the checkpoint metadata on the `entire/checkpoints/v1` branch.","type":"text"},{"id":"toolu_01BiWyJ43jFYF8yfgFxcA1PA","input":{"command":"cd /repo/entire.io \u0026\u0026 git show entire/checkpoints/v1:c1/4692dbdbc6/metadata.json 2\u003e/dev/null | python3 -m json.tool","description":"Read checkpoint metadata from entire/checkpoints/v1 branch"},"name":"Bash","result":{"output":"Exit code 126\nNo version is set for command python3\nConsider adding one of the following versions in your config file at /repo/entire.io/.tool-versions\npython 3.14.3t\npython 3.14.2t","status":"error"},"type":"tool_use"},{"id":"toolu_01L1oBWqKvXaLzDE5FqwFcLx","input":{"command":"cd /repo/entire.io \u0026\u0026 git ls-tree -r --name-only entire/checkpoints/v1 -- c1/4692dbdbc6/ 2\u003e/dev/null","description":"List all files in the checkpoint directory"},"name":"Bash","type":"tool_use"}]} {"v":1,"agent":"claude-code","cli_version":"0.5.1","type":"assistant","ts":"2026-03-27T08:09:25.129Z","id":"msg_016xBDUsQJwugM1TroLdVDut","input_tokens":1,"output_tokens":225,"content":[{"id":"toolu_01TaESULLoEiULgZeaLbejLc","input":{"command":"cd /repo/entire.io \u0026\u0026 git ls-tree -r --name-only entire/checkpoints/v1 -- c1/4692dbdbc6/","description":"List all files in the checkpoint directory"},"name":"Bash","result":{"output":"Shell cwd was reset to /repo/cli","status":"success"},"type":"tool_use"},{"id":"toolu_01B4g4Gq6rBrA6RFec8irRwt","input":{"command":"cd /repo/entire.io \u0026\u0026 git show entire/checkpoints/v1:c1/4692dbdbc6/metadata.json 2\u003e/dev/null | jq .","description":"Read checkpoint metadata"},"name":"Bash","type":"tool_use"}]} @@ -26,57 +26,57 @@ {"v":1,"agent":"claude-code","cli_version":"0.5.1","type":"assistant","ts":"2026-03-27T08:10:50.362Z","id":"msg_01N6h4EH3UhCkVW8vpd9s4Pq","input_tokens":1,"output_tokens":1,"content":[{"text":"Found it. The checkpoint exists on the checkpoints branch but was in a `git log --all` search. Let me get the condensed data.","type":"text"},{"id":"toolu_017tDmRiPQsbreRov9PUeGPX","input":{"command":"cd /repo/entire.io \u0026\u0026 git show 650233607 --format=\"%H%n%s%n%b\" --stat","description":"Show the checkpoint commit details"},"name":"Bash","result":{"output":"650233607d6805de1336d18b02698e9ebedab9b0\nCheckpoint: c14692dbdbc6\nEntire-Session: ad64d18e-f199-4d3e-a7f9-56a9f2667f91\nEntire-Strategy: manual-commit\nEntire-Agent: Claude Code\nEphemeral-branch: entire/02550f3-e3b0c4\n\n\n c1/4692dbdbc6/0/content_hash.txt | 1 +\n c1/4692dbdbc6/0/full.jsonl | 1019 ++++++++++++++++++++++++++++++++++++++\n c1/4692dbdbc6/0/metadata.json | 36 ++\n c1/4692dbdbc6/metadata.json | 26 +\n 4 files changed, 1082 insertions(+)","status":"success"},"type":"tool_use"}]} {"v":1,"agent":"claude-code","cli_version":"0.5.1","type":"assistant","ts":"2026-03-27T08:10:51.028Z","id":"msg_01N6h4EH3UhCkVW8vpd9s4Pq","input_tokens":1,"output_tokens":242,"content":[{"id":"toolu_01LRQcHVLmcb3gJR2V8QvqQo","input":{"command":"cd /repo/entire.io \u0026\u0026 git show 90601f720 --format=\"%H%n%s%n%b\" --stat","description":"Show finalize transcript commit"},"name":"Bash","result":{"output":"90601f7208c9a35dc53fc9ad79886e27739b7e42\nFinalize transcript for Checkpoint: c14692dbdbc6\n\n\n c1/4692dbdbc6/0/content_hash.txt | 2 +-\n c1/4692dbdbc6/0/full.jsonl | 2 ++\n 2 files changed, 3 insertions(+), 1 deletion(-)","status":"success"},"type":"tool_use"}]} {"v":1,"agent":"claude-code","cli_version":"0.5.1","type":"assistant","ts":"2026-03-27T08:10:55.456Z","id":"msg_01BFa4PUnBkmBTmXwRv3JS2f","input_tokens":1,"output_tokens":217,"content":[{"id":"toolu_01VYwnExBDMDDaNmzpsmnEtU","input":{"command":"cd /repo/entire.io \u0026\u0026 git show 90601f720:c1/4692dbdbc6/metadata.json | jq .","description":"Read top-level checkpoint metadata"},"name":"Bash","result":{"output":"{\n \"cli_version\": \"0.5.1\",\n \"checkpoint_id\": \"c14692dbdbc6\",\n \"strategy\": \"manual-commit\",\n \"branch\": \"paxos/repo-overview-polish-3\",\n \"checkpoints_count\": 0,\n \"files_touched\": [\n \"frontend/src/domains/platform/repo-overview/components/SmallStatCard.tsx\",\n \"frontend/src/domains/platform/repo-overview/pages/RepoOverviewPage.tsx\"\n ],\n \"sessions\": [\n {\n \"metadata\": \"/c1/4692dbdbc6/0/metadata.json\",\n \"transcript\": \"/c1/4692dbdbc6/0/full.jsonl\",\n \"content_hash\": \"/c1/4692dbdbc6/0/content_hash.txt\",\n \"prompt\": \"\"\n }\n ],\n \"token_usage\": {\n \"input_tokens\": 10,\n \"cache_creation_tokens\": 5023,\n \"cache_read_tokens\": 1475137,\n \"output_tokens\": 2230,\n \"api_call_count\": 10\n }\n}","status":"success"},"type":"tool_use"},{"id":"toolu_01E7SuDGqDvMMpobExY9kLg5","input":{"command":"cd /repo/entire.io \u0026\u0026 git show 90601f720:c1/4692dbdbc6/0/metadata.json | jq .","description":"Read session-level checkpoint metadata"},"name":"Bash","type":"tool_use"}]} -{"v":1,"agent":"claude-code","cli_version":"0.5.1","type":"assistant","ts":"2026-03-27T08:11:10.950Z","id":"msg_01D13QeVV96NXaCd1pFUhfTS","input_tokens":1,"output_tokens":611,"content":[{"text":"Now let me understand the full picture. The attribution shows `agent_lines: 36`, `human_added: 587`, `total_committed: 623` — but the commit itself is **15 pure deletions**. This means the attribution is measuring the cumulative session, not just this one commit. Let me check what the base was.","type":"text"},{"id":"toolu_01Uj6sXF86svE6WeXAmQP9Y6","input":{"command":"cd /repo/entire.io \u0026\u0026 git log --oneline entire/02550f3-e3b0c4 | head -20","description":"Show shadow branch history"},"name":"Bash","result":{"output":"fatal: ambiguous argument 'entire/02550f3-e3b0c4': unknown revision or path not in the working tree.\nUse '--' to separate paths from revisions, like this:\n'git \u003ccommand\u003e [\u003crevision\u003e...] -- [\u003cfile\u003e...]'","status":"success"},"type":"tool_use"},{"id":"toolu_01QKHkTRmuo6e5NyKV4LaKgP","input":{"command":"cd /repo/entire.io \u0026\u0026 cat .git/entire-sessions/ad64d18e-f199-4d3e-a7f9-56a9f2667f91.json 2\u003e/dev/null | jq . 2\u003e/dev/null || echo \"Session state not found\"","description":"Read session state for the session"},"name":"Bash","type":"tool_use"}]} +{"v":1,"agent":"claude-code","cli_version":"0.5.1","type":"assistant","ts":"2026-03-27T08:11:10.950Z","id":"msg_01D13QeVV96NXaCd1pFUhfTS","input_tokens":1,"output_tokens":611,"content":[{"thinking":"","type":"thinking"},{"text":"Now let me understand the full picture. The attribution shows `agent_lines: 36`, `human_added: 587`, `total_committed: 623` — but the commit itself is **15 pure deletions**. This means the attribution is measuring the cumulative session, not just this one commit. Let me check what the base was.","type":"text"},{"id":"toolu_01Uj6sXF86svE6WeXAmQP9Y6","input":{"command":"cd /repo/entire.io \u0026\u0026 git log --oneline entire/02550f3-e3b0c4 | head -20","description":"Show shadow branch history"},"name":"Bash","result":{"output":"fatal: ambiguous argument 'entire/02550f3-e3b0c4': unknown revision or path not in the working tree.\nUse '--' to separate paths from revisions, like this:\n'git \u003ccommand\u003e [\u003crevision\u003e...] -- [\u003cfile\u003e...]'","status":"success"},"type":"tool_use"},{"id":"toolu_01QKHkTRmuo6e5NyKV4LaKgP","input":{"command":"cd /repo/entire.io \u0026\u0026 cat .git/entire-sessions/ad64d18e-f199-4d3e-a7f9-56a9f2667f91.json 2\u003e/dev/null | jq . 2\u003e/dev/null || echo \"Session state not found\"","description":"Read session state for the session"},"name":"Bash","type":"tool_use"}]} {"v":1,"agent":"claude-code","cli_version":"0.5.1","type":"assistant","ts":"2026-03-27T08:11:20.167Z","id":"msg_01YYhbTcAK1S8znwr11s9ZHY","input_tokens":1,"output_tokens":238,"content":[{"text":"Session state already cleaned up. Let me look at the condensation commit to find the base.","type":"text"},{"id":"toolu_01SizRcDcDQNnazPWn9HBBMG","input":{"command":"cd /repo/entire.io \u0026\u0026 git log --oneline --all --graph --ancestry-path b91ac0681~10..b91ac0681 2\u003e/dev/null | head -30","description":"Show commit ancestry around target"},"name":"Bash","result":{"output":"* fad8f36c9 Fix synthetic commit overwriting rich data in search result dedup\n* 5718a4258 Wire branch filter through search pipeline and fix checkpoint search UX\n* b9b2d4648 Fix search worker local dev: CORS and DB connection reuse\n* f845041ad Gate checkpoint search on search_enabled flag instead of is_admin\n* 8204e5e33 Use search worker for admin checkpoint search on list page\n| * 1f3efb1cc Merge pull request #1287 from entirehq/search-entire-token-auth\n|/| \n| * 2619f3de4 Remove token logging from search worker auth\n| * 7dbdeebf0 Add Entire API token auth to search worker\n|/ \n| * 2684484ee build(deps): bump the cloudflare group across 1 directory with 2 updates\n|/ \n| * 93cf5e84b build(deps): bump hono from 4.12.8 to 4.12.9\n|/ \n| * ef47d1fea build(deps-dev): bump @hey-api/openapi-ts from 0.94.3 to 0.94.5\n|/ \n| * 6ceac9859 build(deps): bump @opentelemetry/api from 1.9.0 to 1.9.1\n|/ \n* 24ef108e2 Merge pull request #981 from entirehq/feat/search-service\n|\\ \n| * 0a57a5c9d Update e2e eval, load tests, and docs to use search worker endpoint\n| * 314f2f021 Add localhost:8686 to dev CSP connect-src for search worker\n| * aa4a8229b Fix search worker inspector port conflict with API worker\n| * 01cde9df1 Fix frontend search API test to mock fetch instead of removed request()\n| * 79cb853f9 Remove API search route; search worker is the single search endpoint\n| * 5988a301d Consolidate to single SearchService used by both API route and search worker\n| * 8ebfc410a Consolidate search worker into api/ and dissolve db-types package\n| * 9fb197408 Fix search service port in mise task to avoid conflict with API\n| * ce093622f Add search service to mise run dev\n| * 3038a5f1e Clean up reranker timeout to prevent dangling rejection","status":"success"},"type":"tool_use"},{"id":"toolu_011nFTJHv2JDtCuAi9hs9Z5s","input":{"command":"cd /repo/entire.io \u0026\u0026 git log --oneline b91ac0681~15..b91ac0681","description":"Show commits leading up to target"},"name":"Bash","type":"tool_use"}]} {"v":1,"agent":"claude-code","cli_version":"0.5.1","type":"assistant","ts":"2026-03-27T08:11:26.207Z","id":"msg_01NTFRsPXiuScKxEhErYWEop","input_tokens":1,"output_tokens":3,"content":[{"text":"Now I can see it. There's a sequence of \"repo overview polish\" commits. Let me find the attribution base — the commit where the session began.","type":"text"},{"id":"toolu_01Wjy5wq895mpgTnBG69Dgc8","input":{"command":"cd /repo/entire.io \u0026\u0026 git log --oneline --grep=\"Entire-Checkpoint\" --format=\"%H %s\" b91ac0681~15..b91ac0681","description":"Find commits with Entire-Checkpoint trailers in the range"},"name":"Bash","result":{"output":"b91ac0681ff15f2a9e583aa2e5b3958443ca984d Remove unused total prop and 3 all-time API queries from repo overview\nf84785e5e98c9316d00c35d2036cce407ad67aa6 Move checkpoint count to its own second line on commits card\n661102e89afac1733edb7d5cc80510d536a6f1d5 Replace checkpoint progress bar with inline dot indicator\n769ff09536bc2ca47f80e52ca4df4842dd743940 Remove links from small metric cards\n53dda2dfd14bb9bee5032aa7026eea3c8a5b6fae Make small stat cards taller and remove background total watermark\n15def3e9372703bcdb084fcdd3c8b9e40fc777df Polish contributors card: remove mono font and GitHub link\n0f54b5df85d54c272e12c10d4aea7cb9727464c2 Replace GitHub logo with overflow menu on repo overview page\n0f1c24696795230b438cde9d794dcee455f70e25 Filter out GitHub merge queue branches from auto trail creation\n73825b822352bac14e2fdae2db305888b661f44b Fix create trail dialog initial focus\nec7943430d05c8a24a291aa7dda74923325dcfd4 Update trail counts and list separators\n4e0ef429b11c41bb12afbc4301fac7df4028615c Add tests for trails route beforeLoad guard\n76ba07d9dc922c0a23c0c6c2030dfa77fd05ae1b Fix trails route showing error instead of 404 when disabled\n178974525fb50f3fd0bb525670ec107edf2e4023 Tidy trail settings review follow-ups\nba9235dbf76031f792c7594b79239e1d30c4ae2b Keep push auto-runs working with trails disabled\ncb185c52fee8d73c9557422ebb2bb62a1aa4fce7 Backfill trails flag for existing repos\n648545add2675e637ed3ee3813886d6cb0758978 add a sampling rate\n2e6503f87944a6757ff850dc4ea9c7f254e9b832 use honeycomb destinations\n3a17fb8eda0e72dbdd2ab4557c145e53b99bf447 Mark auto-created trails as in progress\n6bf274e03d8b85e3a271c0750eb481f1234d7851 Tighten auto-trail webhook follow-ups\nc1c7350d67dc5eb99cb2c458c788176b9ed04c00 Move Trails access checks into route guards\ne3b56b04275fd98329a0ff9a9bc66e16f741e94d Add repo-level trails toggle and auto-create branch trails","status":"success"},"type":"tool_use"}]} {"v":1,"agent":"claude-code","cli_version":"0.5.1","type":"assistant","ts":"2026-03-27T08:11:27.523Z","id":"msg_01NTFRsPXiuScKxEhErYWEop","input_tokens":1,"output_tokens":322,"content":[{"id":"toolu_01WAPkfiXhuasDo7sCS133tN","input":{"command":"cd /repo/entire.io \u0026\u0026 for commit in b91ac0681 f84785e5e 661102e89 769ff0953 53dda2dfd 15def3e93 0f54b5df8; do echo \"=== $commit ===\"; git log -1 --format=\"%s%n%(trailers)\" $commit; echo; done","description":"Show trailers for recent commits on the branch"},"name":"Bash","result":{"output":"=== b91ac0681 ===\nRemove unused total prop and 3 all-time API queries from repo overview\nCo-Authored-By: Claude Opus 4.6 (1M context) \u003cnoreply@anthropic.com\u003e\nEntire-Checkpoint: c14692dbdbc6\n\n\n=== f84785e5e ===\nMove checkpoint count to its own second line on commits card\nCo-Authored-By: Claude Opus 4.6 (1M context) \u003cnoreply@anthropic.com\u003e\nEntire-Checkpoint: 4f3d16aa5881\n\n\n=== 661102e89 ===\nReplace checkpoint progress bar with inline dot indicator\nCo-Authored-By: Claude Opus 4.6 (1M context) \u003cnoreply@anthropic.com\u003e\nEntire-Checkpoint: dc71dfeab480\n\n\n=== 769ff0953 ===\nRemove links from small metric cards\nCo-Authored-By: Claude Opus 4.6 (1M context) \u003cnoreply@anthropic.com\u003e\nEntire-Checkpoint: ee30a9851c75\n\n\n=== 53dda2dfd ===\nMake small stat cards taller and remove background total watermark\nCo-Authored-By: Claude Opus 4.6 (1M context) \u003cnoreply@anthropic.com\u003e\nEntire-Checkpoint: 49cd536c4ead\n\n\n=== 15def3e93 ===\nPolish contributors card: remove mono font and GitHub link\nCo-Authored-By: Claude Opus 4.6 (1M context) \u003cnoreply@anthropic.com\u003e\nEntire-Checkpoint: 51a7944a66d5\n\n\n=== 0f54b5df8 ===\nReplace GitHub logo with overflow menu on repo overview page\nCo-Authored-By: Claude Opus 4.6 (1M context) \u003cnoreply@anthropic.com\u003e\nEntire-Checkpoint: 3bfcf4bcf455","status":"success"},"type":"tool_use"}]} -{"v":1,"agent":"claude-code","cli_version":"0.5.1","type":"assistant","ts":"2026-03-27T08:11:49.049Z","id":"msg_01PMy8YFr1Xf8XXfnMJ3HtQ7","input_tokens":1,"output_tokens":602,"content":[{"text":"All 7 commits are from the same session. The shadow branch was `entire/02550f3-e3b0c4`, so the attribution base commit starts with `02550f3`.","type":"text"},{"id":"toolu_01BeDV9nazX7QiW1TQRNmk5t","input":{"command":"cd /repo/entire.io \u0026\u0026 git log --oneline --all | grep \"^02550f3\"","description":"Find base commit"},"name":"Bash","result":{"output":"(Bash completed with no output)","status":"success"},"type":"tool_use"},{"id":"toolu_01EnPVkBuXjDMmU53CUMui1x","input":{"command":"cd /repo/entire.io \u0026\u0026 git log --oneline b91ac0681~10..b91ac0681~7","description":"Find the commit just before the polish series"},"name":"Bash","type":"tool_use"}]} +{"v":1,"agent":"claude-code","cli_version":"0.5.1","type":"assistant","ts":"2026-03-27T08:11:49.049Z","id":"msg_01PMy8YFr1Xf8XXfnMJ3HtQ7","input_tokens":1,"output_tokens":602,"content":[{"thinking":"","type":"thinking"},{"text":"All 7 commits are from the same session. The shadow branch was `entire/02550f3-e3b0c4`, so the attribution base commit starts with `02550f3`.","type":"text"},{"id":"toolu_01BeDV9nazX7QiW1TQRNmk5t","input":{"command":"cd /repo/entire.io \u0026\u0026 git log --oneline --all | grep \"^02550f3\"","description":"Find base commit"},"name":"Bash","result":{"output":"(Bash completed with no output)","status":"success"},"type":"tool_use"},{"id":"toolu_01EnPVkBuXjDMmU53CUMui1x","input":{"command":"cd /repo/entire.io \u0026\u0026 git log --oneline b91ac0681~10..b91ac0681~7","description":"Find the commit just before the polish series"},"name":"Bash","type":"tool_use"}]} {"v":1,"agent":"claude-code","cli_version":"0.5.1","type":"assistant","ts":"2026-03-27T08:11:58.383Z","id":"msg_01B6sCtsSrfzUxdU7yh6iyoJ","input_tokens":1,"output_tokens":106,"content":[{"id":"toolu_01KTsLwFhuvgQ8Ad38P2YToF","input":{"command":"cd /repo/entire.io \u0026\u0026 git rev-parse 2f81176a5","description":"Get full hash of merge commit before the polish series"},"name":"Bash","result":{"output":"2f81176a570187e4e4412fca64a30cef473004db","status":"success"},"type":"tool_use"}]} {"v":1,"agent":"claude-code","cli_version":"0.5.1","type":"assistant","ts":"2026-03-27T08:12:02.647Z","id":"msg_01MPXHPy8yF5Q8WAmt2jGCCe","input_tokens":1,"output_tokens":115,"content":[{"id":"toolu_01Cm7oK3m8dxeV89hVQvcNuT","input":{"command":"cd /repo/entire.io \u0026\u0026 git log --oneline 2f81176a5~3..0f54b5df8~1","description":"Find exact pre-session commit"},"name":"Bash","result":{"output":"2f81176a5 Merge pull request #1279 from entirehq/mw/filter-merge-queue-branches\n0f1c24696 Filter out GitHub merge queue branches from auto trail creation\n73825b822 Fix create trail dialog initial focus\nec7943430 Update trail counts and list separators","status":"success"},"type":"tool_use"}]} {"v":1,"agent":"claude-code","cli_version":"0.5.1","type":"assistant","ts":"2026-03-27T08:12:08.310Z","id":"msg_01H5R1SW5QCViXkyhdb1bNFj","input_tokens":1,"output_tokens":123,"content":[{"id":"toolu_01AYJKGj6VFRJe1aRMQp6CnG","input":{"command":"cd /repo/entire.io \u0026\u0026 git show 90601f720:c1/4692dbdbc6/0/full.jsonl | head -5","description":"Peek at the transcript to find attribution base info"},"name":"Bash","result":{"output":"{\"type\":\"queue-operation\",\"operation\":\"enqueue\",\"timestamp\":\"2026-03-26T20:55:20.332Z\",\"sessionId\":\"ad64d18e-f199-4d3e-a7f9-56a9f2667f91\",\"content\":\"In the repo overview page, lets not show the github logo. Instead, add an overflow menu (only one entry for now)\"}\n{\"type\":\"queue-operation\",\"operation\":\"dequeue\",\"timestamp\":\"2026-03-26T20:55:21.698Z\",\"sessionId\":\"ad64d18e-f199-4d3e-a7f9-56a9f2667f91\"}\n{\"parentUuid\":null,\"isSidechain\":false,\"type\":\"progress\",\"data\":{\"type\":\"hook_progress\",\"hookEvent\":\"SessionStart\",\"hookName\":\"SessionStart:startup\",\"command\":\"entire hooks claude-code session-start\"},\"parentToolUseID\":\"5f1d5c1a-ab39-4fdf-8b94-250bc6f7aae6\",\"toolUseID\":\"5f1d5c1a-ab39-4fdf-8b94-250bc6f7aae6\",\"timestamp\":\"2026-03-26T20:55:20.228Z\",\"uuid\":\"6e647772-4038-4236-a125-d8018980417f\",\"userType\":\"external\",\"entrypoint\":\"claude-desktop\",\"cwd\":\"/Users/pd/Developer/entire/entire.io\",\"sessionId\":\"ad64d18e-f199-4d3e-a7f9-56a9f2667f91\",\"version\":\"2.1.78\",\"gitBranch\":\"main\",\"slug\":\"cheeky-scribbling-balloon\"}\n{\"parentUuid\":\"6e647772-4038-4236-a125-d8018980417f\",\"isSidechain\":false,\"type\":\"progress\",\"data\":{\"type\":\"hook_progress\",\"hookEvent\":\"SessionStart\",\"hookName\":\"SessionStart:startup\",\"command\":\"\\\"${CLAUDE_PLUGIN_ROOT}/hooks/run-hook.cmd\\\" session-start\"},\"parentToolUseID\":\"5f1d5c1a-ab39-4fdf-8b94-250bc6f7aae6\",\"toolUseID\":\"5f1d5c1a-ab39-4fdf-8b94-250bc6f7aae6\",\"timestamp\":\"2026-03-26T20:55:20.228Z\",\"uuid\":\"2595de81-cc71-4399-8d3f-a0acad8c8921\",\"userType\":\"external\",\"entrypoint\":\"claude-desktop\",\"cwd\":\"/Users/pd/Developer/entire/entire.io\",\"sessionId\":\"ad64d18e-f199-4d3e-a7f9-56a9f2667f91\",\"version\":\"2.1.78\",\"gitBranch\":\"main\",\"slug\":\"cheeky-scribbling-balloon\"}\n{\"parentUuid\":\"2595de81-cc71-4399-8d3f-a0acad8c8921\",\"isSidechain\":false,\"promptId\":\"5f3b445c-bc50-48cc-8bb6-609c4c36cca9\",\"type\":\"user\",\"message\":{\"role\":\"user\",\"content\":\"In the repo overview page, lets not show the github logo. Instead, add an overflow menu (only one entry for now)\"},\"uuid\":\"3a9487cd-0ddf-4f53-8a8b-53f539fa7dea\",\"timestamp\":\"2026-03-26T20:55:21.701Z\",\"permissionMode\":\"plan\",\"userType\":\"external\",\"entrypoint\":\"claude-desktop\",\"cwd\":\"/Users/pd/Developer/entire/entire.io\",\"sessionId\":\"ad64d18e-f199-4d3e-a7f9-56a9f2667f91\",\"version\":\"2.1.78\",\"gitBranch\":\"main\",\"slug\":\"cheeky-scribbling-balloon\"}","status":"success"},"type":"tool_use"}]} -{"v":1,"agent":"claude-code","cli_version":"0.5.1","type":"assistant","ts":"2026-03-27T08:12:17.842Z","id":"msg_01QVXDPuXscQEyxE4FkSn1As","input_tokens":1,"output_tokens":400,"content":[{"id":"toolu_01WJU27bmQG7w6KwiYAbwrZ7","input":{"command":"cd /repo/entire.io \u0026\u0026 git show 90601f720:c1/4692dbdbc6/0/full.jsonl | wc -l","description":"Count transcript lines"},"name":"Bash","result":{"output":" 1021","status":"success"},"type":"tool_use"},{"id":"toolu_01LLq1dPThgRk5Hcq4invkzV","input":{"command":"cd /repo/entire.io \u0026\u0026 git ls-tree -r --name-only 90601f720 -- 3b/fcf4bcf455/ 2\u003e/dev/null; git show 90601f720:3b/fcf4bcf455/0/metadata.json 2\u003e/dev/null | jq .initial_attribution","description":"Read first checkpoint's attribution"},"name":"Bash","type":"tool_use"}]} +{"v":1,"agent":"claude-code","cli_version":"0.5.1","type":"assistant","ts":"2026-03-27T08:12:17.842Z","id":"msg_01QVXDPuXscQEyxE4FkSn1As","input_tokens":1,"output_tokens":400,"content":[{"thinking":"","type":"thinking"},{"id":"toolu_01WJU27bmQG7w6KwiYAbwrZ7","input":{"command":"cd /repo/entire.io \u0026\u0026 git show 90601f720:c1/4692dbdbc6/0/full.jsonl | wc -l","description":"Count transcript lines"},"name":"Bash","result":{"output":" 1021","status":"success"},"type":"tool_use"},{"id":"toolu_01LLq1dPThgRk5Hcq4invkzV","input":{"command":"cd /repo/entire.io \u0026\u0026 git ls-tree -r --name-only 90601f720 -- 3b/fcf4bcf455/ 2\u003e/dev/null; git show 90601f720:3b/fcf4bcf455/0/metadata.json 2\u003e/dev/null | jq .initial_attribution","description":"Read first checkpoint's attribution"},"name":"Bash","type":"tool_use"}]} {"v":1,"agent":"claude-code","cli_version":"0.5.1","type":"assistant","ts":"2026-03-27T08:12:26.650Z","id":"msg_019rWwgpYD3ZdCi9FDaVqpvN","input_tokens":1,"output_tokens":264,"content":[{"text":"Now let me check the attribution base and walk through the calculation for the target commit.","type":"text"},{"id":"toolu_01ACjRn4DSSJ8uyZEGddzyva","input":{"command":"cd /repo/entire.io \u0026\u0026 git show 90601f720:3b/fcf4bcf455/metadata.json | jq .","description":"Read first checkpoint top-level metadata"},"name":"Bash","result":{"output":"{\n \"cli_version\": \"0.5.1\",\n \"checkpoint_id\": \"3bfcf4bcf455\",\n \"strategy\": \"manual-commit\",\n \"branch\": \"paxos/repo-overview-polish-3\",\n \"checkpoints_count\": 7,\n \"files_touched\": [\n \"frontend/src/domains/platform/repo-overview/pages/RepoOverviewPage.tsx\"\n ],\n \"sessions\": [\n {\n \"metadata\": \"/3b/fcf4bcf455/0/metadata.json\",\n \"transcript\": \"/3b/fcf4bcf455/0/full.jsonl\",\n \"content_hash\": \"/3b/fcf4bcf455/0/content_hash.txt\",\n \"prompt\": \"/3b/fcf4bcf455/0/prompt.txt\"\n }\n ],\n \"token_usage\": {\n \"input_tokens\": 64,\n \"cache_creation_tokens\": 65143,\n \"cache_read_tokens\": 3036423,\n \"output_tokens\": 7776,\n \"api_call_count\": 46\n }\n}","status":"success"},"type":"tool_use"},{"id":"toolu_019uvUqUMNnik5Bru74uJX9r","input":{"command":"cd /repo/entire.io \u0026\u0026 git show 90601f720:3b/fcf4bcf455/0/metadata.json | jq '{checkpoint_id, session_id, created_at, branch, checkpoints_count, files_touched, agent, turn_id}'","description":"Read first checkpoint session metadata"},"name":"Bash","type":"tool_use"}]} -{"v":1,"agent":"claude-code","cli_version":"0.5.1","type":"assistant","ts":"2026-03-27T08:12:44.336Z","id":"msg_013fnw9PtCKcYg35pqg3d64h","input_tokens":1,"output_tokens":723,"content":[{"text":"Let me understand how attribution_base_commit gets updated across commits in a session.","type":"text"},{"id":"toolu_015JDwGBFUg2RYN5djHipin8","input":{"pattern":"attribution_base_commit|AttributionBaseCommit","path":"/repo/cli/cmd/entire/cli/strategy","output_mode":"content","context":2},"name":"Grep","result":{"output":"cmd/entire/cli/strategy/manual_commit_test.go-2225-\t\tSessionID: \"test-no-shadow\",\ncmd/entire/cli/strategy/manual_commit_test.go-2226-\t\tBaseCommit: initialHash.String(),\ncmd/entire/cli/strategy/manual_commit_test.go:2227:\t\tAttributionBaseCommit: initialHash.String(),\ncmd/entire/cli/strategy/manual_commit_test.go-2228-\t\tFilesTouched: []string{\"src/main.go\", \"README.md\"},\ncmd/entire/cli/strategy/manual_commit_test.go-2229-\t\tTranscriptPath: transcriptFile,\n--\ncmd/entire/cli/strategy/manual_commit_test.go-2387-\t\tSessionID: \"test-mixed-no-shadow\",\ncmd/entire/cli/strategy/manual_commit_test.go-2388-\t\tBaseCommit: initialHash.String(),\ncmd/entire/cli/strategy/manual_commit_test.go:2389:\t\tAttributionBaseCommit: initialHash.String(),\ncmd/entire/cli/strategy/manual_commit_test.go-2390-\t\tFilesTouched: []string{\"src/app.go\"},\ncmd/entire/cli/strategy/manual_commit_test.go-2391-\t\tTranscriptPath: transcriptFile,\n--\ncmd/entire/cli/strategy/manual_commit_hooks.go-1099-\tnewHead := head.Hash().String()\n/repo/cli/cmd/entire/cli/strategy/manual_commit_hooks.go-1100-\tstate.BaseCommit = newHead\ncmd/entire/cli/strategy/manual_commit_hooks.go:1101:\tstate.AttributionBaseCommit = newHead\n/repo/cli/cmd/entire/cli/strategy/manual_commit_hooks.go-1102-\tstate.StepCount = 0\n/repo/cli/cmd/entire/cli/strategy/manual_commit_hooks.go-1103-\tstate.CheckpointTranscriptStart = result.TotalTranscriptLines\n--\n/repo/cli/cmd/entire/cli/strategy/manual_commit_condensation.go-189-\n/repo/cli/cmd/entire/cli/strategy/manual_commit_condensation.go-190-\t// Determine attribution base commit\ncmd/entire/cli/strategy/manual_commit_condensation.go:191:\tattrBase := state.AttributionBaseCommit\n/repo/cli/cmd/entire/cli/strategy/manual_commit_condensation.go-192-\tif attrBase == \"\" {\n/repo/cli/cmd/entire/cli/strategy/manual_commit_condensation.go-193-\t\tattrBase = state.BaseCommit\n--\n/repo/cli/cmd/entire/cli/strategy/manual_commit_condensation.go-411-\t// Get base tree (state before session started)\n/repo/cli/cmd/entire/cli/strategy/manual_commit_condensation.go-412-\tvar baseTree *object.Tree\ncmd/entire/cli/strategy/manual_commit_condensation.go:413:\tattrBase := state.AttributionBaseCommit\n/repo/cli/cmd/entire/cli/strategy/manual_commit_condensation.go-414-\tif attrBase == \"\" {\n/repo/cli/cmd/entire/cli/strategy/manual_commit_condensation.go-415-\t\tattrBase = state.BaseCommit // backward compat\n--\n/repo/cli/cmd/entire/cli/strategy/manual_commit_condensation.go-863-\tstate.Phase = session.PhaseIdle\n/repo/cli/cmd/entire/cli/strategy/manual_commit_condensation.go-864-\tstate.LastCheckpointID = checkpointID\ncmd/entire/cli/strategy/manual_commit_condensation.go:865:\tstate.AttributionBaseCommit = state.BaseCommit\n/repo/cli/cmd/entire/cli/strategy/manual_commit_condensation.go-866-\tstate.PromptAttributions = nil\n/repo/cli/cmd/entire/cli/strategy/manual_commit_condensation.go-867-\tstate.PendingPromptAttribution = nil\n--\ncmd/entire/cli/strategy/manual_commit_session.go-230-\t\tCLIVersion: versioninfo.Version,\ncmd/entire/cli/strategy/manual_commit_session.go-231-\t\tBaseCommit: headHash,\ncmd/entire/cli/strategy/manual_commit_session.go:232:\t\tAttributionBaseCommit: headHash,\ncmd/entire/cli/strategy/manual_commit_session.go-233-\t\tWorktreePath: worktreePath,\ncmd/entire/cli/strategy/manual_commit_session.go-234-\t\tWorktreeID: worktreeID,","status":"success"},"type":"tool_use"}]} +{"v":1,"agent":"claude-code","cli_version":"0.5.1","type":"assistant","ts":"2026-03-27T08:12:44.336Z","id":"msg_013fnw9PtCKcYg35pqg3d64h","input_tokens":1,"output_tokens":723,"content":[{"thinking":"","type":"thinking"},{"text":"Let me understand how attribution_base_commit gets updated across commits in a session.","type":"text"},{"id":"toolu_015JDwGBFUg2RYN5djHipin8","input":{"pattern":"attribution_base_commit|AttributionBaseCommit","path":"/repo/cli/cmd/entire/cli/strategy","output_mode":"content","context":2},"name":"Grep","result":{"output":"cmd/entire/cli/strategy/manual_commit_test.go-2225-\t\tSessionID: \"test-no-shadow\",\ncmd/entire/cli/strategy/manual_commit_test.go-2226-\t\tBaseCommit: initialHash.String(),\ncmd/entire/cli/strategy/manual_commit_test.go:2227:\t\tAttributionBaseCommit: initialHash.String(),\ncmd/entire/cli/strategy/manual_commit_test.go-2228-\t\tFilesTouched: []string{\"src/main.go\", \"README.md\"},\ncmd/entire/cli/strategy/manual_commit_test.go-2229-\t\tTranscriptPath: transcriptFile,\n--\ncmd/entire/cli/strategy/manual_commit_test.go-2387-\t\tSessionID: \"test-mixed-no-shadow\",\ncmd/entire/cli/strategy/manual_commit_test.go-2388-\t\tBaseCommit: initialHash.String(),\ncmd/entire/cli/strategy/manual_commit_test.go:2389:\t\tAttributionBaseCommit: initialHash.String(),\ncmd/entire/cli/strategy/manual_commit_test.go-2390-\t\tFilesTouched: []string{\"src/app.go\"},\ncmd/entire/cli/strategy/manual_commit_test.go-2391-\t\tTranscriptPath: transcriptFile,\n--\ncmd/entire/cli/strategy/manual_commit_hooks.go-1099-\tnewHead := head.Hash().String()\n/repo/cli/cmd/entire/cli/strategy/manual_commit_hooks.go-1100-\tstate.BaseCommit = newHead\ncmd/entire/cli/strategy/manual_commit_hooks.go:1101:\tstate.AttributionBaseCommit = newHead\n/repo/cli/cmd/entire/cli/strategy/manual_commit_hooks.go-1102-\tstate.StepCount = 0\n/repo/cli/cmd/entire/cli/strategy/manual_commit_hooks.go-1103-\tstate.CheckpointTranscriptStart = result.TotalTranscriptLines\n--\n/repo/cli/cmd/entire/cli/strategy/manual_commit_condensation.go-189-\n/repo/cli/cmd/entire/cli/strategy/manual_commit_condensation.go-190-\t// Determine attribution base commit\ncmd/entire/cli/strategy/manual_commit_condensation.go:191:\tattrBase := state.AttributionBaseCommit\n/repo/cli/cmd/entire/cli/strategy/manual_commit_condensation.go-192-\tif attrBase == \"\" {\n/repo/cli/cmd/entire/cli/strategy/manual_commit_condensation.go-193-\t\tattrBase = state.BaseCommit\n--\n/repo/cli/cmd/entire/cli/strategy/manual_commit_condensation.go-411-\t// Get base tree (state before session started)\n/repo/cli/cmd/entire/cli/strategy/manual_commit_condensation.go-412-\tvar baseTree *object.Tree\ncmd/entire/cli/strategy/manual_commit_condensation.go:413:\tattrBase := state.AttributionBaseCommit\n/repo/cli/cmd/entire/cli/strategy/manual_commit_condensation.go-414-\tif attrBase == \"\" {\n/repo/cli/cmd/entire/cli/strategy/manual_commit_condensation.go-415-\t\tattrBase = state.BaseCommit // backward compat\n--\n/repo/cli/cmd/entire/cli/strategy/manual_commit_condensation.go-863-\tstate.Phase = session.PhaseIdle\n/repo/cli/cmd/entire/cli/strategy/manual_commit_condensation.go-864-\tstate.LastCheckpointID = checkpointID\ncmd/entire/cli/strategy/manual_commit_condensation.go:865:\tstate.AttributionBaseCommit = state.BaseCommit\n/repo/cli/cmd/entire/cli/strategy/manual_commit_condensation.go-866-\tstate.PromptAttributions = nil\n/repo/cli/cmd/entire/cli/strategy/manual_commit_condensation.go-867-\tstate.PendingPromptAttribution = nil\n--\ncmd/entire/cli/strategy/manual_commit_session.go-230-\t\tCLIVersion: versioninfo.Version,\ncmd/entire/cli/strategy/manual_commit_session.go-231-\t\tBaseCommit: headHash,\ncmd/entire/cli/strategy/manual_commit_session.go:232:\t\tAttributionBaseCommit: headHash,\ncmd/entire/cli/strategy/manual_commit_session.go-233-\t\tWorktreePath: worktreePath,\ncmd/entire/cli/strategy/manual_commit_session.go-234-\t\tWorktreeID: worktreeID,","status":"success"},"type":"tool_use"}]} {"v":1,"agent":"claude-code","cli_version":"0.5.1","type":"assistant","ts":"2026-03-27T08:12:48.541Z","id":"msg_011HcsssZEVAu3CzDq4NgPEV","input_tokens":1,"output_tokens":117,"content":[{"id":"toolu_01Rn9vqKcbaDHruG2JqQyYk8","input":{"file_path":"/repo/cli/cmd/entire/cli/strategy/manual_commit_condensation.go","offset":180,"limit":80},"name":"Read","result":{"output":" 180→\n 181→\t// Get checkpoint store\n 182→\tstore, err := s.getCheckpointStore()\n 183→\tif err != nil {\n 184→\t\treturn nil, fmt.Errorf(\"failed to get checkpoint store: %w\", err)\n 185→\t}\n 186→\n 187→\t// Get author info\n 188→\tauthorName, authorEmail := GetGitAuthorFromRepo(repo)\n 189→\n 190→\t// Determine attribution base commit\n 191→\tattrBase := state.AttributionBaseCommit\n 192→\tif attrBase == \"\" {\n 193→\t\tattrBase = state.BaseCommit\n 194→\t}\n 195→\n 196→\tattribution := calculateSessionAttributions(ctx, repo, ref, sessionData, state, attributionOpts{\n 197→\t\theadTree: o.headTree,\n 198→\t\trepoDir: o.repoDir,\n 199→\t\tattributionBaseCommit: attrBase,\n 200→\t\theadCommitHash: o.headCommitHash,\n 201→\t})\n 202→\n 203→\t// Get current branch name\n 204→\tbranchName := GetCurrentBranchName(repo)\n 205→\n 206→\t// Generate summary if enabled\n 207→\tvar summary *cpkg.Summary\n 208→\tif settings.IsSummarizeEnabled(ctx) \u0026\u0026 len(sessionData.Transcript) \u003e 0 {\n 209→\t\tsummarizeCtx := logging.WithComponent(ctx, \"summarize\")\n 210→\n 211→\t\tvar scopedTranscript []byte\n 212→\t\tswitch state.AgentType {\n 213→\t\tcase agent.AgentTypeGemini:\n 214→\t\t\tscoped, sliceErr := geminicli.SliceFromMessage(sessionData.Transcript, state.CheckpointTranscriptStart)\n 215→\t\t\tif sliceErr != nil {\n 216→\t\t\t\tlogging.Warn(summarizeCtx, \"failed to scope Gemini transcript for summary\",\n 217→\t\t\t\t\tslog.String(\"session_id\", state.SessionID),\n 218→\t\t\t\t\tslog.String(\"error\", sliceErr.Error()))\n 219→\t\t\t}\n 220→\t\t\tscopedTranscript = scoped\n 221→\t\tcase agent.AgentTypeOpenCode:\n 222→\t\t\tscoped, sliceErr := opencode.SliceFromMessage(sessionData.Transcript, state.CheckpointTranscriptStart)\n 223→\t\t\tif sliceErr != nil {\n 224→\t\t\t\tlogging.Warn(summarizeCtx, \"failed to scope OpenCode transcript for summary\",\n 225→\t\t\t\t\tslog.String(\"session_id\", state.SessionID),\n 226→\t\t\t\t\tslog.String(\"error\", sliceErr.Error()))\n 227→\t\t\t}\n 228→\t\t\tscopedTranscript = scoped\n 229→\t\tcase agent.AgentTypeClaudeCode, agent.AgentTypeCursor, agent.AgentTypeFactoryAIDroid, agent.AgentTypeUnknown:\n 230→\t\t\tscopedTranscript = transcript.SliceFromLine(sessionData.Transcript, state.CheckpointTranscriptStart)\n 231→\t\t}\n 232→\t\tif len(scopedTranscript) \u003e 0 {\n 233→\t\t\tvar err error\n 234→\t\t\tsummary, err = summarize.GenerateFromTranscript(summarizeCtx, scopedTranscript, sessionData.FilesTouched, state.AgentType, nil)\n 235→\t\t\tif err != nil {\n 236→\t\t\t\tlogging.Warn(summarizeCtx, \"summary generation failed\",\n 237→\t\t\t\t\tslog.String(\"session_id\", state.SessionID),\n 238→\t\t\t\t\tslog.String(\"error\", err.Error()))\n 239→\t\t\t} else {\n 240→\t\t\t\tlogging.Info(summarizeCtx, \"summary generated\",\n 241→\t\t\t\t\tslog.String(\"session_id\", state.SessionID))\n 242→\t\t\t}\n 243→\t\t}\n 244→\t}\n 245→\n 246→\t// Build write options (shared by v1 and v2)\n 247→\twriteOpts := cpkg.WriteCommittedOptions{\n 248→\t\tCheckpointID: checkpointID,\n 249→\t\tSessionID: state.SessionID,\n 250→\t\tStrategy: StrategyNameManualCommit,\n 251→\t\tBranch: branchName,\n 252→\t\tTranscript: sessionData.Transcript,\n 253→\t\tPrompts: sessionData.Prompts,\n 254→\t\tFilesTouched: sessionData.FilesTouched,\n 255→\t\tCheckpointsCount: state.StepCount,\n 256→\t\tEphemeralBranch: shadowBranchName,\n 257→\t\tAuthorName: authorName,\n 258→\t\tAuthorEmail: authorEmail,\n 259→\t\tAgent: state.AgentType,","status":"success","file":{"filePath":"/repo/cli/cmd/entire/cli/strategy/manual_commit_condensation.go","numLines":80}},"type":"tool_use"}]} {"v":1,"agent":"claude-code","cli_version":"0.5.1","type":"assistant","ts":"2026-03-27T08:12:51.991Z","id":"msg_01B7mJyRSW2hYVjz6kfQVKfQ","input_tokens":1,"output_tokens":138,"content":[{"text":"Now let me look at exactly how `AttributionBaseCommit` gets reset after condensation.","type":"text"},{"id":"toolu_01YP3Wn2xaTq8M69ZpaedRKB","input":{"file_path":"/repo/cli/cmd/entire/cli/strategy/manual_commit_condensation.go","offset":850,"limit":30},"name":"Read","result":{"output":" 850→\t\treturn fmt.Errorf(\"failed to condense session: %w\", err)\n 851→\t}\n 852→\n 853→\tlogging.Info(logCtx, \"session condensed by ID\",\n 854→\t\tslog.String(\"session_id\", sessionID),\n 855→\t\tslog.String(\"checkpoint_id\", result.CheckpointID.String()),\n 856→\t\tslog.Int(\"checkpoints_condensed\", result.CheckpointsCount),\n 857→\t)\n 858→\n 859→\t// Update session state: reset step count and transition to idle\n 860→\tstate.StepCount = 0\n 861→\tstate.CheckpointTranscriptStart = result.TotalTranscriptLines\n 862→\tstate.CheckpointTranscriptSize = int64(len(result.Transcript))\n 863→\tstate.Phase = session.PhaseIdle\n 864→\tstate.LastCheckpointID = checkpointID\n 865→\tstate.AttributionBaseCommit = state.BaseCommit\n 866→\tstate.PromptAttributions = nil\n 867→\tstate.PendingPromptAttribution = nil\n 868→\n 869→\tif err := s.saveSessionState(ctx, state); err != nil {\n 870→\t\treturn fmt.Errorf(\"failed to save session state: %w\", err)\n 871→\t}\n 872→\n 873→\t// Clean up shadow branch if no other sessions need it\n 874→\tif err := s.cleanupShadowBranchIfUnused(ctx, repo, shadowBranchName, sessionID); err != nil {\n 875→\t\tlogging.Warn(logCtx, \"failed to clean up shadow branch\",\n 876→\t\t\tslog.String(\"shadow_branch\", shadowBranchName),\n 877→\t\t\tslog.String(\"error\", err.Error()),\n 878→\t\t)\n 879→\t\t// Non-fatal: condensation succeeded, shadow branch cleanup is best-effort","status":"success","file":{"filePath":"/repo/cli/cmd/entire/cli/strategy/manual_commit_condensation.go","numLines":30}},"type":"tool_use"}]} {"v":1,"agent":"claude-code","cli_version":"0.5.1","type":"assistant","ts":"2026-03-27T08:12:54.893Z","id":"msg_01HHnEWCTjHn1EjYDU9tubx7","input_tokens":1,"output_tokens":117,"content":[{"id":"toolu_017EUnWcBMQFjfHMXU2YZVGX","input":{"file_path":"/repo/cli/cmd/entire/cli/strategy/manual_commit_hooks.go","offset":1090,"limit":30},"name":"Read","result":{"output":" 1090→\t\t\tslog.String(\"error\", err.Error()),\n 1091→\t\t)\n 1092→\t\treturn false\n 1093→\t}\n 1094→\n 1095→\t// Track this shadow branch for cleanup\n 1096→\tshadowBranchesToDelete[shadowBranchName] = struct{}{}\n 1097→\n 1098→\t// Update session state for the new base commit\n 1099→\tnewHead := head.Hash().String()\n 1100→\tstate.BaseCommit = newHead\n 1101→\tstate.AttributionBaseCommit = newHead\n 1102→\tstate.StepCount = 0\n 1103→\tstate.CheckpointTranscriptStart = result.TotalTranscriptLines\n 1104→\tstate.CheckpointTranscriptSize = int64(len(result.Transcript))\n 1105→\n 1106→\t// Clear attribution tracking — condensation already used these values\n 1107→\tstate.PromptAttributions = nil\n 1108→\tstate.PendingPromptAttribution = nil\n 1109→\tstate.FilesTouched = nil\n 1110→\n 1111→\t// NOTE: filesystem prompt.txt is NOT cleared here. The caller (PostCommit handler)\n 1112→\t// decides whether to clear it based on carry-forward: if remaining files exist,\n 1113→\t// the prompt must persist so the next condensation can read it.\n 1114→\n 1115→\t// Save checkpoint ID so subsequent commits can reuse it (e.g., amend restores trailer)\n 1116→\tstate.LastCheckpointID = checkpointID\n 1117→\n 1118→\tlogging.Info(logCtx, \"session condensed\",\n 1119→\t\tslog.String(\"strategy\", \"manual-commit\"),","status":"success","file":{"filePath":"/repo/cli/cmd/entire/cli/strategy/manual_commit_hooks.go","numLines":30}},"type":"tool_use"}]} -{"v":1,"agent":"claude-code","cli_version":"0.5.1","type":"assistant","ts":"2026-03-27T08:13:21.559Z","id":"msg_011XwbRuEDfK118kNFEJBbzA","input_tokens":1,"output_tokens":1171,"content":[{"id":"toolu_01TzGrymtD8eqgxUHw3UaUWd","input":{"pattern":"calculateSessionAttributions","path":"/repo/cli/cmd/entire/cli/strategy","output_mode":"files_with_matches"},"name":"Grep","result":{"output":"Found 2 files\ncmd/entire/cli/strategy/manual_commit_hooks.go\ncmd/entire/cli/strategy/manual_commit_condensation.go","status":"success","matchCount":2},"type":"tool_use"}]} +{"v":1,"agent":"claude-code","cli_version":"0.5.1","type":"assistant","ts":"2026-03-27T08:13:21.559Z","id":"msg_011XwbRuEDfK118kNFEJBbzA","input_tokens":1,"output_tokens":1171,"content":[{"thinking":"","type":"thinking"},{"id":"toolu_01TzGrymtD8eqgxUHw3UaUWd","input":{"pattern":"calculateSessionAttributions","path":"/repo/cli/cmd/entire/cli/strategy","output_mode":"files_with_matches"},"name":"Grep","result":{"output":"Found 2 files\ncmd/entire/cli/strategy/manual_commit_hooks.go\ncmd/entire/cli/strategy/manual_commit_condensation.go","status":"success","matchCount":2},"type":"tool_use"}]} {"v":1,"agent":"claude-code","cli_version":"0.5.1","type":"assistant","ts":"2026-03-27T08:13:27.275Z","id":"msg_01DsEVcRQakvpbwRaq2m4RHe","input_tokens":1,"output_tokens":67,"content":[{"id":"toolu_011deLE1zWFkorK3Dop2Y9j2","input":{"pattern":"func calculateSessionAttributions\"","path":"/repo/cli/cmd/entire/cli/strategy","output_mode":"content"},"name":"Grep","result":{"output":"No matches found","status":"success"},"type":"tool_use"}]} {"v":1,"agent":"claude-code","cli_version":"0.5.1","type":"assistant","ts":"2026-03-27T08:13:27.946Z","id":"msg_01DsEVcRQakvpbwRaq2m4RHe","input_tokens":1,"output_tokens":210,"content":[{"id":"toolu_014koAVqEb7AYohhy37HxiPR","input":{"pattern":"func calculateSessionAttributions","path":"/repo/cli/cmd/entire/cli/strategy","output_mode":"content"},"name":"Grep","result":{"output":"cmd/entire/cli/strategy/manual_commit_condensation.go:345:func calculateSessionAttributions(ctx context.Context, repo *git.Repository, shadowRef *plumbing.Reference, sessionData *ExtractedSessionData, state *SessionState, opts ...attributionOpts) *cpkg.InitialAttribution {","status":"success"},"type":"tool_use"}]} {"v":1,"agent":"claude-code","cli_version":"0.5.1","type":"assistant","ts":"2026-03-27T08:13:31.311Z","id":"msg_01U4zpk2LhgK6RNKWt93ikg7","input_tokens":1,"output_tokens":117,"content":[{"id":"toolu_01K8eW7tVcCkrJ2cTHNrtU31","input":{"file_path":"/repo/cli/cmd/entire/cli/strategy/manual_commit_condensation.go","offset":345,"limit":100},"name":"Read","result":{"output":" 345→func calculateSessionAttributions(ctx context.Context, repo *git.Repository, shadowRef *plumbing.Reference, sessionData *ExtractedSessionData, state *SessionState, opts ...attributionOpts) *cpkg.InitialAttribution {\n 346→\t// Calculate initial attribution using accumulated prompt attribution data.\n 347→\t// This uses user edits captured at each prompt start (before agent works),\n 348→\t// plus any user edits after the final checkpoint (shadow → head).\n 349→\t//\n 350→\t// When shadowRef is nil (agent committed mid-turn before SaveStep),\n 351→\t// HEAD is used as the shadow tree. This is correct because the agent's\n 352→\t// commit IS HEAD — there are no user edits between agent work and commit.\n 353→\tlogCtx := logging.WithComponent(ctx, \"attribution\")\n 354→\n 355→\tvar o attributionOpts\n 356→\tif len(opts) \u003e 0 {\n 357→\t\to = opts[0]\n 358→\t}\n 359→\n 360→\theadTree := o.headTree\n 361→\tif headTree == nil {\n 362→\t\theadRef, headErr := repo.Head()\n 363→\t\tif headErr != nil {\n 364→\t\t\tlogging.Debug(logCtx, \"attribution skipped: failed to get HEAD\",\n 365→\t\t\t\tslog.String(\"error\", headErr.Error()))\n 366→\t\t\treturn nil\n 367→\t\t}\n 368→\n 369→\t\theadCommit, commitErr := repo.CommitObject(headRef.Hash())\n 370→\t\tif commitErr != nil {\n 371→\t\t\tlogging.Debug(logCtx, \"attribution skipped: failed to get HEAD commit\",\n 372→\t\t\t\tslog.String(\"error\", commitErr.Error()))\n 373→\t\t\treturn nil\n 374→\t\t}\n 375→\n 376→\t\tvar treeErr error\n 377→\t\theadTree, treeErr = headCommit.Tree()\n 378→\t\tif treeErr != nil {\n 379→\t\t\tlogging.Debug(logCtx, \"attribution skipped: failed to get HEAD tree\",\n 380→\t\t\t\tslog.String(\"error\", treeErr.Error()))\n 381→\t\t\treturn nil\n 382→\t\t}\n 383→\t}\n 384→\n 385→\t// Get shadow tree: from pre-resolved cache, shadow branch, or HEAD (agent committed directly).\n 386→\tshadowTree := o.shadowTree\n 387→\tif shadowTree == nil {\n 388→\t\tif shadowRef != nil {\n 389→\t\t\tshadowCommit, shadowErr := repo.CommitObject(shadowRef.Hash())\n 390→\t\t\tif shadowErr != nil {\n 391→\t\t\t\tlogging.Debug(logCtx, \"attribution skipped: failed to get shadow commit\",\n 392→\t\t\t\t\tslog.String(\"error\", shadowErr.Error()),\n 393→\t\t\t\t\tslog.String(\"shadow_ref\", shadowRef.Hash().String()))\n 394→\t\t\t\treturn nil\n 395→\t\t\t}\n 396→\t\t\tvar shadowTreeErr error\n 397→\t\t\tshadowTree, shadowTreeErr = shadowCommit.Tree()\n 398→\t\t\tif shadowTreeErr != nil {\n 399→\t\t\t\tlogging.Debug(logCtx, \"attribution skipped: failed to get shadow tree\",\n 400→\t\t\t\t\tslog.String(\"error\", shadowTreeErr.Error()))\n 401→\t\t\t\treturn nil\n 402→\t\t\t}\n 403→\t\t} else {\n 404→\t\t\t// No shadow branch: agent committed mid-turn. Use HEAD as shadow\n 405→\t\t\t// because the agent's work is the commit itself.\n 406→\t\t\tlogging.Debug(logCtx, \"attribution: using HEAD as shadow (no shadow branch)\")\n 407→\t\t\tshadowTree = headTree\n 408→\t\t}\n 409→\t}\n 410→\n 411→\t// Get base tree (state before session started)\n 412→\tvar baseTree *object.Tree\n 413→\tattrBase := state.AttributionBaseCommit\n 414→\tif attrBase == \"\" {\n 415→\t\tattrBase = state.BaseCommit // backward compat\n 416→\t}\n 417→\tif baseCommit, baseErr := repo.CommitObject(plumbing.NewHash(attrBase)); baseErr == nil {\n 418→\t\tif tree, baseTErr := baseCommit.Tree(); baseTErr == nil {\n 419→\t\t\tbaseTree = tree\n 420→\t\t} else {\n 421→\t\t\tlogging.Debug(logCtx, \"attribution: base tree unavailable\",\n 422→\t\t\t\tslog.String(\"error\", baseTErr.Error()))\n 423→\t\t}\n 424→\t} else {\n 425→\t\tlogging.Debug(logCtx, \"attribution: base commit unavailable\",\n 426→\t\t\tslog.String(\"error\", baseErr.Error()),\n 427→\t\t\tslog.String(\"attribution_base\", attrBase))\n 428→\t}\n 429→\n 430→\t// Log accumulated prompt attributions for debugging\n 431→\tvar totalUserAdded, totalUserRemoved int\n 432→\tfor i, pa := range state.PromptAttributions {\n 433→\t\ttotalUserAdded += pa.UserLinesAdded\n 434→\t\ttotalUserRemoved += pa.UserLinesRemoved\n 435→\t\tlogging.Debug(logCtx, \"prompt attribution data\",\n 436→\t\t\tslog.Int(\"checkpoint\", pa.CheckpointNumber),\n 437→\t\t\tslog.Int(\"user_added\", pa.UserLinesAdded),\n 438→\t\t\tslog.Int(\"user_removed\", pa.UserLinesRemoved),\n 439→\t\t\tslog.Int(\"agent_added\", pa.AgentLinesAdded),\n 440→\t\t\tslog.Int(\"agent_removed\", pa.AgentLinesRemoved),\n 441→\t\t\tslog.Int(\"index\", i))\n 442→\t}\n 443→\n 444→\tattribution := CalculateAttributionWithAccumulated(","status":"success","file":{"filePath":"/repo/cli/cmd/entire/cli/strategy/manual_commit_condensation.go","numLines":100}},"type":"tool_use"}]} {"v":1,"agent":"claude-code","cli_version":"0.5.1","type":"assistant","ts":"2026-03-27T08:13:34.997Z","id":"msg_01Q3n87FZJsGbYZ83VDkSzLZ","input_tokens":1,"output_tokens":117,"content":[{"id":"toolu_01EW34inNcaDBnLvHsVr9K3B","input":{"file_path":"/repo/cli/cmd/entire/cli/strategy/manual_commit_condensation.go","offset":444,"limit":30},"name":"Read","result":{"output":" 444→\tattribution := CalculateAttributionWithAccumulated(\n 445→\t\tctx,\n 446→\t\tbaseTree,\n 447→\t\tshadowTree,\n 448→\t\theadTree,\n 449→\t\tsessionData.FilesTouched,\n 450→\t\tstate.PromptAttributions,\n 451→\t\to.repoDir,\n 452→\t\to.attributionBaseCommit,\n 453→\t\to.headCommitHash,\n 454→\t)\n 455→\n 456→\tif attribution != nil {\n 457→\t\tlogging.Info(logCtx, \"attribution calculated\",\n 458→\t\t\tslog.Int(\"agent_lines\", attribution.AgentLines),\n 459→\t\t\tslog.Int(\"human_added\", attribution.HumanAdded),\n 460→\t\t\tslog.Int(\"human_modified\", attribution.HumanModified),\n 461→\t\t\tslog.Int(\"human_removed\", attribution.HumanRemoved),\n 462→\t\t\tslog.Int(\"total_committed\", attribution.TotalCommitted),\n 463→\t\t\tslog.Float64(\"agent_percentage\", attribution.AgentPercentage),\n 464→\t\t\tslog.Int(\"accumulated_user_added\", totalUserAdded),\n 465→\t\t\tslog.Int(\"accumulated_user_removed\", totalUserRemoved),\n 466→\t\t\tslog.Int(\"files_touched\", len(sessionData.FilesTouched)))\n 467→\t}\n 468→\n 469→\treturn attribution\n 470→}\n 471→\n 472→// extractSessionData extracts session data from the shadow branch.\n 473→// filesTouched is the list of files tracked during the session (from SessionState.FilesTouched).","status":"success","file":{"filePath":"/repo/cli/cmd/entire/cli/strategy/manual_commit_condensation.go","numLines":30}},"type":"tool_use"}]} {"v":1,"agent":"claude-code","cli_version":"0.5.1","type":"assistant","ts":"2026-03-27T08:13:39.202Z","id":"msg_01HAMzcS1fN3Gdoi4Ky23Xev","input_tokens":1,"output_tokens":197,"content":[{"text":"Now let me look at the post-commit hook handler where condensation is triggered to see how `state.FilesTouched` is carried across commits.","type":"text"},{"id":"toolu_01B3WZKwFYm7ZCno81mPmpSL","input":{"pattern":"FilesTouched.*=.*nil|FilesTouched.*=.*\\[\\]|FilesTouched.*append|FilesTouched","path":"/repo/cli/cmd/entire/cli/strategy/manual_commit_hooks.go","output_mode":"content","context":3},"name":"Grep","result":{"output":"651-\treturn nil\n652-}\n653-\n654:func (h *postCommitActionHandler) HandleCondenseIfFilesTouched(state *session.State) error {\n655-\tlogCtx := logging.WithComponent(h.ctx, \"checkpoint\")\n656:\tshouldCondense := len(state.FilesTouched) \u003e 0 \u0026\u0026 h.shouldCondenseWithOverlapCheck(state.Phase.IsActive(), state.LastInteractionTime)\n657-\n658:\tlogging.Debug(logCtx, \"post-commit: HandleCondenseIfFilesTouched decision\",\n659-\t\tslog.String(\"session_id\", state.SessionID),\n660-\t\tslog.String(\"phase\", string(state.Phase)),\n661-\t\tslog.Bool(\"has_new\", h.hasNew),\n662:\t\tslog.Int(\"files_touched\", len(state.FilesTouched)),\n663-\t\tslog.Bool(\"should_condense\", shouldCondense),\n664-\t\tslog.String(\"shadow_branch\", h.shadowBranchName),\n665-\t)\n--\n733-}\n734-\n735-func (h *postCommitActionHandler) HandleDiscardIfNoFiles(state *session.State) error {\n736:\tif len(state.FilesTouched) == 0 {\n737-\t\tlogging.Debug(logging.WithComponent(h.ctx, \"checkpoint\"), \"post-commit: skipping empty ended session (no files to condense)\",\n738-\t\t\tslog.String(\"session_id\", state.SessionID),\n739-\t\t)\n--\n953-\t\t\t)\n954-\t\t}\n955-\t}\n956:\ttransitionCtx.HasFilesTouched = len(state.FilesTouched) \u003e 0\n957-\n958:\t// Save FilesTouched BEFORE TransitionAndLog — the handler's condensation\n959-\t// clears it, but we need the original list for carry-forward computation.\n960-\t// Only fall back to transcript extraction for ACTIVE sessions — IDLE/ENDED\n961:\t// sessions have FilesTouched already populated by SaveStep/mergeFilesTouched.\n962-\tvar filesTouchedBefore []string\n963-\tif state.Phase.IsActive() {\n964:\t\tfilesTouchedBefore = s.resolveFilesTouched(ctx, state)\n965:\t} else if len(state.FilesTouched) \u003e 0 {\n966:\t\tfilesTouchedBefore = make([]string, len(state.FilesTouched))\n967:\t\tcopy(filesTouchedBefore, state.FilesTouched)\n968-\t}\n969-\tcheckContentSpan.End()\n970-\n--\n1024-\t\t\theadTree: headTree,\n1025-\t\t\tshadowTree: shadowTree,\n1026-\t\t})\n1027:\t\tstate.FilesTouched = remainingFiles\n1028-\t\tlogging.Debug(logCtx, \"post-commit: carry-forward decision (content-aware)\",\n1029-\t\t\tslog.String(\"session_id\", state.SessionID),\n1030-\t\t\tslog.Int(\"files_touched_before\", len(filesTouchedBefore)),\n--\n1049-\t// Mark ENDED sessions as fully condensed when no carry-forward remains.\n1050-\t// PostCommit will skip these sessions entirely on future commits.\n1051-\t// They persist only for LastCheckpointID (amend trailer restoration).\n1052:\tif handler.condensed \u0026\u0026 state.Phase == session.PhaseEnded \u0026\u0026 len(state.FilesTouched) == 0 {\n1053-\t\tstate.FullyCondensed = true\n1054-\t}\n1055-\n--\n1106-\t// Clear attribution tracking — condensation already used these values\n1107-\tstate.PromptAttributions = nil\n1108-\tstate.PendingPromptAttribution = nil\n1109:\tstate.FilesTouched = nil\n1110-\n1111-\t/ NOTE: filesystem prompt.txt is NOT cleared here. The caller (PostCommit handler)\n1112-\t/ decides whether to clear it based on carry-forward: if remaining files exist,\n--\n1242-\t\t\tlogging.Debug(logCtx, \"filterSessionsWithNewContent: session has no new content\",\n1243-\t\t\t\tslog.String(\"session_id\", state.SessionID),\n1244-\t\t\t\tslog.String(\"phase\", string(state.Phase)),\n1245:\t\t\t\tslog.Int(\"files_touched\", len(state.FilesTouched)),\n1246-\t\t\t)\n1247-\t\t}\n1248-\t\tif hasNew {\n--\n1318-\t}\n1319-\n1320-\t// If shadow branch exists but has no transcript (e.g., carry-forward from mid-session commit),\n1321:\t// check if the session has FilesTouched. Carry-forward sets FilesTouched with remaining files.\n1322-\tif !hasTranscriptFile {\n1323:\t\tif len(state.FilesTouched) \u003e 0 {\n1324-\t\t\t// Shadow branch has files from carry-forward - check if staged files overlap\n1325-\t\t\t// AND have matching content (content-aware check).\n1326-\t\t\tif len(opts.stagedFiles) \u003e 0 {\n1327-\t\t\t\t/ PrepareCommitMsg context: check staged files overlap with content\n1328:\t\t\t\tresult := stagedFilesOverlapWithContent(ctx, repo, tree, opts.stagedFiles, state.FilesTouched)\n1329-\t\t\t\tlogging.Debug(logCtx, \"sessionHasNewContent: no transcript, carry-forward with staged files\",\n1330-\t\t\t\t\tslog.String(\"session_id\", state.SessionID),\n1331:\t\t\t\t\tslog.Int(\"files_touched\", len(state.FilesTouched)),\n1332-\t\t\t\t\tslog.Int(\"staged_files\", len(opts.stagedFiles)),\n1333-\t\t\t\t\tslog.Bool(\"result\", result),\n1334-\t\t\t\t)\n--\n1338-\t\t\t// Return true and let the caller do the overlap check with committed files.\n1339-\t\t\tlogging.Debug(logCtx, \"sessionHasNewContent: no transcript, carry-forward without staged files (post-commit context)\",\n1340-\t\t\t\tslog.String(\"session_id\", state.SessionID),\n1341:\t\t\t\tslog.Int(\"files_touched\", len(state.FilesTouched)),\n1342-\t\t\t)\n1343-\t\t\treturn true, nil\n1344-\t\t}\n1345:\t\t// No transcript and no FilesTouched - fall back to live transcript check\n1346-\t\tlogging.Debug(logCtx, \"sessionHasNewContent: no transcript and no files touched, checking live transcript\",\n1347-\t\t\tslog.String(\"session_id\", state.SessionID),\n1348-\t\t)\n--\n1351-\n1352-\t/ Check if there's new content to condense. Two cases:\n1353-\t// 1. Transcript has grown since last condensation (new prompts/responses)\n1354:\t// 2. FilesTouched has files not yet committed (carry-forward scenario)\n1355-\t//\n1356-\t// For PrepareCommitMsg context, we verify staged files overlap with session's files\n1357-\t// using content-aware matching to detect reverted files.\n--\n1374-\t\t/ Never condensed (CheckpointTranscriptStart == 0): any content means growth.\n1375-\t\thasTranscriptGrowth = transcriptBlobSize \u003e 0\n1376-\t}\n1377:\thasUncommittedFiles := len(state.FilesTouched) \u003e 0\n1378-\n1379-\tlogging.Debug(logCtx, \"sessionHasNewContent: transcript size check\",\n1380-\t\tslog.String(\"session_id\", state.SessionID),\n--\n1391-\t// Check if staged files overlap with session's files with content-aware matching.\n1392-\t// This is primarily for PrepareCommitMsg; in PostCommit, stagedFiles is nil/empty.\n1393-\tif len(opts.stagedFiles) \u003e 0 {\n1394:\t\tresult := stagedFilesOverlapWithContent(ctx, repo, tree, opts.stagedFiles, state.FilesTouched)\n1395-\t\tlogging.Debug(logCtx, \"sessionHasNewContent: staged files overlap check\",\n1396-\t\t\tslog.String(\"session_id\", state.SessionID),\n1397-\t\t\tslog.Int(\"staged_files\", len(opts.stagedFiles)),\n--\n1436-\n1437-\t// Prefer hook-populated files. If empty, extract from transcript directly —\n1438-\t// hasNewTranscriptWork already called PrepareTranscript, so we bypass\n1439:\t// resolveFilesTouched (which would prepare again) and extract directly.\n1440:\tmodifiedFiles := state.FilesTouched\n1441-\tif len(modifiedFiles) == 0 {\n1442-\t\tmodifiedFiles = s.extractModifiedFilesFromLiveTranscript(ctx, state, state.CheckpointTranscriptStart)\n1443-\t}\n--\n1466-\treturn true, nil\n1467-}\n1468-\n1469:// resolveFilesTouched returns the file list for a session.\n1470:// Prefers hook-populated state.FilesTouched, falls back to transcript extraction.\n1471-// All call sites that need \"what files did the agent touch?\" should use this.\n1472-//\n1473-// Handles PrepareTranscript internally before falling back to extraction,\n1474-// so callers don't need to prepare the transcript first.\n1475:func (s *ManualCommitStrategy) resolveFilesTouched(ctx context.Context, state *SessionState) []string {\n1476:\tif len(state.FilesTouched) \u003e 0 {\n1477:\t\tresult := make([]string, len(state.FilesTouched))\n1478:\t\tcopy(result, state.FilesTouched)\n1479-\t\treturn result\n1480-\t}\n1481-","status":"success"},"type":"tool_use"}]} -{"v":1,"agent":"claude-code","cli_version":"0.5.1","type":"assistant","ts":"2026-03-27T08:14:48.180Z","id":"msg_015f3v6Z3HuDjc76MoDuDZvN","input_tokens":1,"output_tokens":1039,"content":[{"text":"Let me check the previous checkpoint to understand the carry-forward.","type":"text"},{"id":"toolu_017q9TTg71LRYpAk5zTKRPi2","input":{"command":"cd /repo/entire.io \u0026\u0026 git show 90601f720:4f/3d16aa5881/0/metadata.json | jq '{initial_attribution, files_touched, checkpoints_count}'","description":"Read previous checkpoint's attribution and files"},"name":"Bash","result":{"output":"{\n \"initial_attribution\": {\n \"calculated_at\": \"2026-03-26T21:43:16.655534Z\",\n \"agent_lines\": 6,\n \"human_added\": 0,\n \"human_modified\": 0,\n \"human_removed\": 0,\n \"total_committed\": 6,\n \"agent_percentage\": 100\n },\n \"files_touched\": [\n \"frontend/src/domains/platform/repo-overview/components/SmallStatCard.tsx\"\n ],\n \"checkpoints_count\": 6\n}","status":"success"},"type":"tool_use"},{"id":"toolu_013iU7EjpiajWd7h1f6CqEmH","input":{"command":"cd /repo/entire.io \u0026\u0026 git show 90601f720:4f/3d16aa5881/metadata.json | jq '{files_touched, checkpoints_count}'","description":"Read previous checkpoint top-level metadata"},"name":"Bash","type":"tool_use"}]} +{"v":1,"agent":"claude-code","cli_version":"0.5.1","type":"assistant","ts":"2026-03-27T08:14:48.180Z","id":"msg_015f3v6Z3HuDjc76MoDuDZvN","input_tokens":1,"output_tokens":1039,"content":[{"thinking":"","type":"thinking"},{"text":"Let me check the previous checkpoint to understand the carry-forward.","type":"text"},{"id":"toolu_017q9TTg71LRYpAk5zTKRPi2","input":{"command":"cd /repo/entire.io \u0026\u0026 git show 90601f720:4f/3d16aa5881/0/metadata.json | jq '{initial_attribution, files_touched, checkpoints_count}'","description":"Read previous checkpoint's attribution and files"},"name":"Bash","result":{"output":"{\n \"initial_attribution\": {\n \"calculated_at\": \"2026-03-26T21:43:16.655534Z\",\n \"agent_lines\": 6,\n \"human_added\": 0,\n \"human_modified\": 0,\n \"human_removed\": 0,\n \"total_committed\": 6,\n \"agent_percentage\": 100\n },\n \"files_touched\": [\n \"frontend/src/domains/platform/repo-overview/components/SmallStatCard.tsx\"\n ],\n \"checkpoints_count\": 6\n}","status":"success"},"type":"tool_use"},{"id":"toolu_013iU7EjpiajWd7h1f6CqEmH","input":{"command":"cd /repo/entire.io \u0026\u0026 git show 90601f720:4f/3d16aa5881/metadata.json | jq '{files_touched, checkpoints_count}'","description":"Read previous checkpoint top-level metadata"},"name":"Bash","type":"tool_use"}]} {"v":1,"agent":"claude-code","cli_version":"0.5.1","type":"assistant","ts":"2026-03-27T08:18:00.160Z","id":"msg_01GN3K391QLK3f179y73jfYk","input_tokens":1,"output_tokens":236,"content":[{"id":"toolu_019n12VhHKFQU85RSGSGBncT","input":{"command":"cd /repo/entire.io \u0026\u0026 for ckpt in 3bfcf4bcf455 51a7944a66d5 49cd536c4ead ee30a9851c75 dc71dfeab480 4f3d16aa5881 c14692dbdbc6; do prefix=\"${ckpt:0:2}/${ckpt:2}/\"; echo \"=== $ckpt ===\"; git show 90601f720:${prefix}0/metadata.json 2\u003e/dev/null | jq '{checkpoint_id, checkpoints_count, files_touched, initial_attribution}'; echo; done","description":"Read all 7 checkpoints' attribution data"},"name":"Bash","result":{"output":"=== 3bfcf4bcf455 ===\n{\n \"checkpoint_id\": \"3bfcf4bcf455\",\n \"checkpoints_count\": 7,\n \"files_touched\": [\n \"frontend/src/domains/platform/repo-overview/pages/RepoOverviewPage.tsx\"\n ],\n \"initial_attribution\": {\n \"calculated_at\": \"2026-03-26T21:05:34.483276Z\",\n \"agent_lines\": 13,\n \"human_added\": 5,\n \"human_modified\": 1,\n \"human_removed\": 0,\n \"total_committed\": 19,\n \"agent_percentage\": 68.42105263157895\n }\n}\n\n=== 51a7944a66d5 ===\n{\n \"checkpoint_id\": \"51a7944a66d5\",\n \"checkpoints_count\": 2,\n \"files_touched\": [\n \"frontend/src/domains/platform/repo-overview/components/ContributorsCard.tsx\",\n \"frontend/src/domains/platform/repo-overview/pages/RepoOverviewPage.tsx\"\n ],\n \"initial_attribution\": {\n \"calculated_at\": \"2026-03-26T21:11:37.435664Z\",\n \"agent_lines\": 2,\n \"human_added\": 0,\n \"human_modified\": 0,\n \"human_removed\": 0,\n \"total_committed\": 2,\n \"agent_percentage\": 100\n }\n}\n\n=== 49cd536c4ead ===\n{\n \"checkpoint_id\": \"49cd536c4ead\",\n \"checkpoints_count\": 3,\n \"files_touched\": [\n \"frontend/src/domains/platform/repo-overview/components/SmallStatCard.tsx\"\n ],\n \"initial_attribution\": {\n \"calculated_at\": \"2026-03-26T21:18:39.636926Z\",\n \"agent_lines\": 8,\n \"human_added\": 0,\n \"human_modified\": 0,\n \"human_removed\": 0,\n \"total_committed\": 8,\n \"agent_percentage\": 100\n }\n}\n\n=== ee30a9851c75 ===\n{\n \"checkpoint_id\": \"ee30a9851c75\",\n \"checkpoints_count\": 1,\n \"files_touched\": [\n \"frontend/src/domains/platform/repo-overview/pages/RepoOverviewPage.tsx\"\n ],\n \"initial_attribution\": {\n \"calculated_at\": \"2026-03-26T21:19:57.054061Z\",\n \"agent_lines\": 0,\n \"human_added\": 3,\n \"human_modified\": 4,\n \"human_removed\": 0,\n \"total_committed\": 3,\n \"agent_percentage\": 0\n }\n}\n\n=== dc71dfeab480 ===\n{\n \"checkpoint_id\": \"dc71dfeab480\",\n \"checkpoints_count\": 3,\n \"files_touched\": [\n \"frontend/src/domains/platform/repo-overview/components/SmallStatCard.tsx\"\n ],\n \"initial_attribution\": {\n \"calculated_at\": \"2026-03-26T21:27:17.710128Z\",\n \"agent_lines\": 6,\n \"human_added\": 0,\n \"human_modified\": 0,\n \"human_removed\": 0,\n \"total_committed\": 6,\n \"agent_percentage\": 100\n }\n}\n\n=== 4f3d16aa5881 ===\n{\n \"checkpoint_id\": \"4f3d16aa5881\",\n \"checkpoints_count\": 6,\n \"files_touched\": [\n \"frontend/src/domains/platform/repo-overview/components/SmallStatCard.tsx\"\n ],\n \"initial_attribution\": {\n \"calculated_at\": \"2026-03-26T21:43:16.655534Z\",\n \"agent_lines\": 6,\n \"human_added\": 0,\n \"human_modified\": 0,\n \"human_removed\": 0,\n \"total_committed\": 6,\n \"agent_percentage\": 100\n }\n}\n\n=== c14692dbdbc6 ===\n{\n \"checkpoint_id\": \"c14692dbdbc6\",\n \"checkpoints_count\": 0,\n \"files_touched\": [\n \"frontend/src/domains/platform/repo-overview/components/SmallStatCard.tsx\",\n \"frontend/src/domains/platform/repo-overview/pages/RepoOverviewPage.tsx\"\n ],\n \"initial_attribution\": {\n \"calculated_at\": \"2026-03-26T22:04:11.349007Z\",\n \"agent_lines\": 36,\n \"human_added\": 587,\n \"human_modified\": 0,\n \"human_removed\": 0,\n \"total_committed\": 623,\n \"agent_percentage\": 5.778491171749598\n }\n}","status":"success"},"type":"tool_use"}]} {"v":1,"agent":"claude-code","cli_version":"0.5.1","type":"user","ts":"2026-03-27T08:26:49.686Z","content":[{"id":"55fa7ad4-dfbf-449e-a68c-8b75b5db3d7b","text":"[Request interrupted by user]"}]} {"v":1,"agent":"claude-code","cli_version":"0.5.1","type":"user","ts":"2026-03-27T08:26:53.240Z","content":[{"id":"d56b8d8c-c853-4ddf-8eac-e394409ff0c4","text":"are you stuck?"}]} {"v":1,"agent":"claude-code","cli_version":"0.5.1","type":"assistant","ts":"2026-03-27T08:27:06.719Z","id":"msg_017Tey7NUTSv8tPk2iLRszB7","input_tokens":3,"output_tokens":476,"content":[{"text":"\n\nNo, I have all the data. Let me walk through what happened.\n\nThe 7th checkpoint (`c14692dbdbc6`) has wildly inflated numbers: `agent_lines: 36`, `human_added: 587`, `total_committed: 623` — for a commit that only **deletes 15 lines**.\n\nThe key: `checkpoints_count: 0`. There were no shadow branch checkpoints for this condensation. That means:\n\n1. `shadowRef` is nil → the code falls back to `shadowTree = headTree` (line 407 of `manual_commit_condensation.go`)\n2. `baseTree` = tree at `AttributionBaseCommit` (which should be the previous commit `f84785e5e`)\n3. `headTree` = tree at `b91ac0681`\n\nSince `shadowTree == headTree`, the `diffLines(shadowContent, headContent)` will always return 0 changes (they're identical). So the entire calculation collapses to:\n\n```\ntotalAgentAndUserWork = diffLines(base, head).added // for the 2 files_touched\n```\n\nBut diffing `f84785e5e..b91ac0681` for those 2 files should yield 0 additions and 15 deletions. So where do 623 added lines come from?\n\n**The bug**: the `AttributionBaseCommit` wasn't the previous commit. It was likely still pointing at a much earlier commit — possibly the original session start. Let me verify.","type":"text"},{"id":"toolu_01LsZpvm75Fnv6nHVGW1YY9C","input":{"command":"cd /repo/entire.io \u0026\u0026 git log --oneline --all --grep=\"Entire-Session: ad64d18e\" --format=\"%H %s\" | head -20","description":"Find all commits from this session"},"name":"Bash","result":{"output":"650233607d6805de1336d18b02698e9ebedab9b0 Checkpoint: c14692dbdbc6\n4c489c1f0aa685ab13e73a89ebde1c7bc72e839b Checkpoint: edb8621b1e02\n94b45a1c73b740613384fb86c679bd6b0c1b04a5 Checkpoint: 4f3d16aa5881\naa2b125ee94b4e4c5112197e4da10206d96ebd55 Checkpoint: dc71dfeab480\n291514dbab2134f95b5dbbe0700fa6ea5ed3cdb6 Checkpoint: ee30a9851c75\n0a6be3948fabe7aa52d5bbab7ea9f24c56b5caf1 Checkpoint: 49cd536c4ead\nb29c83ed883b9f9a54120a574edb18c9e7a4f87b Checkpoint: 51a7944a66d5\n3339105d6d891e3c0fd75f621f674092cc425c57 Checkpoint: 3bfcf4bcf455","status":"success"},"type":"tool_use"}]} {"v":1,"agent":"claude-code","cli_version":"0.5.1","type":"assistant","ts":"2026-03-27T08:27:20.821Z","id":"msg_01WRDTo5pGF4t4j1c2DgqpCZ","input_tokens":1,"output_tokens":151,"content":[{"id":"toolu_015AmKZdc7cxGNwazFuVVHLR","input":{"command":"cd /repo/entire.io \u0026\u0026 git show 90601f720:ed/b8621b1e02/0/metadata.json 2\u003e/dev/null | jq '{checkpoint_id, checkpoints_count, files_touched, initial_attribution}'","description":"Check the mystery 8th checkpoint between 4f3d and c146"},"name":"Bash","result":{"output":"{\n \"checkpoint_id\": \"edb8621b1e02\",\n \"checkpoints_count\": 1,\n \"files_touched\": [\n \".claude/settings.json\",\n \".codex/config.toml\",\n \".codex/hooks.json\",\n \".git-blame-ignore-revs\",\n \".github/workflows/api-tests.yml\",\n \".github/workflows/deploy-api-staging.yml\",\n \".github/workflows/deploy-api.yml\",\n \".github/workflows/deploy-frontend-staging.yml\",\n \".github/workflows/deploy-frontend.yml\",\n \".github/workflows/deploy-storybook.yml\",\n \".github/workflows/frontend-tests.yml\",\n \".github/workflows/rollback-staging.yml\",\n \".gitignore\",\n \".mcp.json\",\n \".npmrc\",\n \".opencode/plugins/entire.ts\",\n \".oxfmtrc.json\",\n \".prettierignore\",\n \".vscode/extensions.json\",\n \".zed/settings.json\",\n \"CLAUDE.md\",\n \"README.md\",\n \"api/CLAUDE.md\",\n \"api/db/migrations-lint.test.ts\",\n \"api/db/migrations/001_initial_schema.ts\",\n \"api/db/migrations/002_add_foreign_keys.ts\",\n \"api/db/migrations/003_index_users_github_login.ts\",\n \"api/db/migrations/004_add_transcript_stripped.ts\",\n \"api/db/migrations/005_add_runner_tables.ts\",\n \"api/db/migrations/006_add_repo_archived_flag.ts\",\n \"api/db/migrations/007_revert_user_settings.ts\",\n \"api/db/migrations/20260318181525_add_checkpoint_repo.ts\",\n \"api/db/migrations/20260319075903_add_repo_trails.ts\",\n \"api/db/migrations/20260319100000_api_tokens.ts\",\n \"api/db/migrations/20260319132219_add_repo_commits_tables.ts\",\n \"api/db/migrations/20260320223149_add_dashboard_query_indexes.ts\",\n \"api/db/migrations/20260320232646_add_checkpoint_commits_branch_sha_index.ts\",\n \"api/db/migrations/20260321114024_add_checkpoint_commits_repo_sha_index.ts\",\n \"api/db/migrations/20260321120000_deduplicate_checkpoint_commits.ts\",\n \"api/db/migrations/20260323180419_add_merged_at_to_pull_requests.ts\",\n \"api/db/migrations/20260325144932_add_org_memberships.ts\",\n \"api/db/migrations/20260326120000_add_trails_enabled_flag.ts\",\n \"api/db/types.ts\",\n \"api/docs/commit-checkpoint-sync.md\",\n \"api/docs/data-sync-architecture.md\",\n \"api/docs/migration-plan-supabase-to-planetscale.md\",\n \"api/docs/openapi.json\",\n \"api/docs/plans/2026-02-05-sessions-v1-format.md\",\n \"api/docs/plans/2026-02-20-trails-implementation.md\",\n \"api/docs/plans/sessions-v1-format.md\",\n \"api/package.json\",\n \"api/scripts/backfill-search.ts\",\n \"api/scripts/create-migration.ts\",\n \"api/scripts/migrate.ts\",\n \"api/scripts/openapi/filter-public-spec.test.ts\",\n \"api/scripts/openapi/filter-public-spec.ts\",\n \"api/scripts/openapi/generate.ts\",\n \"api/scripts/reset.ts\",\n \"api/scripts/test-search-index.ts\",\n \"api/scripts/test-webhook.ts\",\n \"api/src/app.ts\",\n \"api/src/env.ts\",\n \"api/src/index.ts\",\n \"api/src/lib/agent-run-queue.test.ts\",\n \"api/src/lib/agent-run-queue.ts\",\n \"api/src/lib/agents/command-builder.test.ts\",\n \"api/src/lib/agents/command-builder.ts\",\n \"api/src/lib/agents/config-loader.test.ts\",\n \"api/src/lib/agents/config-loader.ts\",\n \"api/src/lib/agents/configs.ts\",\n \"api/src/lib/agents/db-agent-runs.ts\",\n \"api/src/lib/agents/e2b-service.test.ts\",\n \"api/src/lib/agents/e2b-service.ts\",\n \"api/src/lib/agents/prompt-builder.test.ts\",\n \"api/src/lib/agents/prompt-builder.ts\",\n \"api/src/lib/agents/push-router.test.ts\",\n \"api/src/lib/agents/push-router.ts\",\n \"api/src/lib/agents/trail-eval.test.ts\",\n \"api/src/lib/agents/trail-eval.ts\",\n \"api/src/lib/agents/trail-semantic-diff.test.ts\",\n \"api/src/lib/agents/trail-semantic-diff.ts\",\n \"api/src/lib/agents/trail-story.test.ts\",\n \"api/src/lib/agents/trail-story.ts\",\n \"api/src/lib/agents/types.ts\",\n \"api/src/lib/auto-trails.test.ts\",\n \"api/src/lib/auto-trails.ts\",\n \"api/src/lib/checkpoint-mapper.test.ts\",\n \"api/src/lib/checkpoint-mapper.ts\",\n \"api/src/lib/commit-cache.ts\",\n \"api/src/lib/concurrency.ts\",\n \"api/src/lib/constants.ts\",\n \"api/src/lib/context.ts\",\n \"api/src/lib/crypto.test.ts\",\n \"api/src/lib/crypto.ts\",\n \"api/src/lib/darwin-mappers.test.ts\",\n \"api/src/lib/darwin-mappers.ts\",\n \"api/src/lib/darwin.ts\",\n \"api/src/lib/db.ts\",\n \"api/src/lib/db/admin.ts\",\n \"api/src/lib/db/checkpoints.ts\",\n \"api/src/lib/db/db-types.ts\",\n \"api/src/lib/db/installations.ts\",\n \"api/src/lib/db/prs.ts\",\n \"api/src/lib/db/repos.ts\",\n \"api/src/lib/db/sync-types.ts\",\n \"api/src/lib/entire-settings.ts\",\n \"api/src/lib/github-ip.test.ts\",\n \"api/src/lib/github-ip.ts\",\n \"api/src/lib/github.test.ts\",\n \"api/src/lib/github.ts\",\n \"api/src/lib/kv.test.ts\",\n \"api/src/lib/kv.ts\",\n \"api/src/lib/middleware-bearer.test.ts\",\n \"api/src/lib/middleware.test.ts\",\n \"api/src/lib/middleware.ts\",\n \"api/src/lib/planetscale/admin.ts\",\n \"api/src/lib/planetscale/agents.test.ts\",\n \"api/src/lib/planetscale/agents.ts\",\n \"api/src/lib/planetscale/api-tokens.test.ts\",\n \"api/src/lib/planetscale/api-tokens.ts\",\n \"api/src/lib/planetscale/checkpoints.ts\",\n \"api/src/lib/planetscale/client.ts\",\n \"api/src/lib/planetscale/installations.ts\",\n \"api/src/lib/planetscale/kysely.test.ts\",\n \"api/src/lib/planetscale/kysely.ts\",\n \"api/src/lib/planetscale/org-memberships.ts\",\n \"api/src/lib/planetscale/prs.ts\",\n \"api/src/lib/planetscale/refresh-state.ts\",\n \"api/src/lib/planetscale/repo-overview.ts\",\n \"api/src/lib/planetscale/repos.ts\",\n \"api/src/lib/planetscale/row-helpers.test.ts\",\n \"api/src/lib/planetscale/row-helpers.ts\",\n \"api/src/lib/planetscale/trails.ts\",\n \"api/src/lib/planetscale/users.test.ts\",\n \"api/src/lib/planetscale/users.ts\",\n \"api/src/lib/repo-sync-queue.ts\",\n \"api/src/lib/repo-sync-service.test.ts\",\n \"api/src/lib/repo-sync-service.ts\",\n \"api/src/lib/search-index-queue.ts\",\n \"api/src/lib/search-reranker.ts\",\n \"api/src/lib/session.ts\",\n \"api/src/lib/strip-transcript.test.ts\",\n \"api/src/lib/strip-transcript.ts\",\n \"api/src/lib/sync-service.ts\",\n \"api/src/lib/telemetry.test.ts\",\n \"api/src/lib/telemetry.ts\",\n \"api/src/lib/token.test.ts\",\n \"api/src/lib/token.ts\",\n \"api/src/lib/transcript-chunker.test.ts\",\n \"api/src/lib/transcript-chunker.ts\",\n \"api/src/lib/transcript-parsers/claude-code-parser.test.ts\",\n \"api/src/lib/transcript-parsers/claude-code-parser.ts\",\n \"api/src/lib/transcript-parsers/codex-parser.test.ts\",\n \"api/src/lib/transcript-parsers/codex-parser.ts\",\n \"api/src/lib/transcript-parsers/common.ts\",\n \"api/src/lib/transcript-parsers/copilot-cli-parser.ts\",\n \"api/src/lib/transcript-parsers/cursor-parser.ts\",\n \"api/src/lib/transcript-parsers/droid-parser.test.ts\",\n \"api/src/lib/transcript-parsers/droid-parser.ts\",\n \"api/src/lib/transcript-parsers/fallback-parser.ts\",\n \"api/src/lib/transcript-parsers/gemini-parser.ts\",\n \"api/src/lib/transcript-parsers/index.ts\",\n \"api/src/lib/transcript-parsers/kiro-parser.test.ts\",\n \"api/src/lib/transcript-parsers/kiro-parser.ts\",\n \"api/src/lib/transcript-parsers/opencode-parser.ts\",\n \"api/src/lib/transcript-parsers/registry.test.ts\",\n \"api/src/lib/transcript-parsers/registry.ts\",\n \"api/src/lib/transcript-parsers/resolve.ts\",\n \"api/src/lib/transcript-parsers/transcript-filtering.test.ts\",\n \"api/src/lib/transcript-parsers/types.ts\",\n \"api/src/lib/transcript-parsers/unified-transcript-parser.test.ts\",\n \"api/src/lib/transcript-parsers/unified-transcript-parser.ts\",\n \"api/src/lib/turbopuffer.test.ts\",\n \"api/src/lib/turbopuffer.ts\",\n \"api/src/lib/user-repo-sync.test.ts\",\n \"api/src/lib/user-repo-sync.ts\",\n \"api/src/lib/uuid.test.ts\",\n \"api/src/lib/uuid.ts\",\n \"api/src/lib/webhook/processing.test.ts\",\n \"api/src/lib/webhook/processing.ts\",\n \"api/src/lib/webhook/queue.test.ts\",\n \"api/src/lib/webhook/queue.ts\",\n \"api/src/routes/admin.test.ts\",\n \"api/src/routes/admin.ts\",\n \"api/src/routes/auth-dev.test.ts\",\n \"api/src/routes/auth-dev.ts\",\n \"api/src/routes/auth-test-utils.ts\",\n \"api/src/routes/auth.test.ts\",\n \"api/src/routes/auth.ts\",\n \"api/src/routes/cache.test.ts\",\n \"api/src/routes/cache.ts\",\n \"api/src/routes/cli-auth.test.ts\",\n \"api/src/routes/cli-auth.ts\",\n \"api/src/routes/github-stars.test.ts\",\n \"api/src/routes/repo-overview.ts\",\n \"api/src/routes/runners.test.ts\",\n \"api/src/routes/runners.ts\",\n \"api/src/routes/search.test.ts\",\n \"api/src/routes/search.ts\",\n \"api/src/routes/trail-semantic-diff.test.ts\",\n \"api/src/routes/trail-story.test.ts\",\n \"api/src/routes/trails.test.ts\",\n \"api/src/routes/trails.ts\",\n \"api/src/routes/webhooks.ts\",\n \"api/src/types.ts\",\n \"api/src/types/database.ts\",\n \"api/test/planetscale/admin.test.ts\",\n \"api/test/planetscale/checkpoints-activity.test.ts\",\n \"api/test/planetscale/checkpoints.test.ts\",\n \"api/test/planetscale/commitDateToWeekIndex.test.ts\",\n \"api/test/planetscale/installations.test.ts\",\n \"api/test/planetscale/mysql-test-client.ts\",\n \"api/test/planetscale/prs.test.ts\",\n \"api/test/planetscale/refresh-state.test.ts\",\n \"api/test/planetscale/repo-overview.test.ts\",\n \"api/test/planetscale/repos.test.ts\",\n \"api/test/planetscale/trails.test.ts\",\n \"api/test/planetscale/users.test.ts\",\n \"api/test/repo-sync-service.test.ts\",\n \"api/test/routes.test.ts\",\n \"api/test/setup.ts\",\n \"api/test/trail-merge-detection.test.ts\",\n \"api/tsconfig.json\",\n \"api/vitest.config.ts\",\n \"api/vitest.unit.config.ts\",\n \"api/wrangler.jsonc\",\n \"docs/setup.md\",\n \"docs/specs/2026-03-19-search-eval-pipeline-design.md\",\n \"docs/specs/2026-03-19-search-eval-pipeline-plan.md\",\n \"e2e/LOAD_TESTING_APPROACH.md\",\n \"e2e/README.md\",\n \"e2e/eval/golden.json\",\n \"e2e/eval/golden.schema.ts\",\n \"e2e/eval/judge.ts\",\n \"e2e/eval/label.ts\",\n \"e2e/eval/metrics.test.ts\",\n \"e2e/eval/metrics.ts\",\n \"e2e/eval/report.ts\",\n \"e2e/eval/run-eval.ts\",\n \"e2e/eval/runner.ts\",\n \"e2e/global-setup.ts\",\n \"e2e/k6/load-test.js\",\n \"e2e/k6/profiles.js\",\n \"e2e/k6/search-load-test.js\",\n \"e2e/package.json\",\n \"e2e/playwright.config.ts\",\n \"e2e/scripts/generate-k6-tests.ts\",\n \"e2e/tests/browse-checkpoints.spec.ts\",\n \"e2e/tests/browse-repositories.spec.ts\",\n \"frontend/.storybook/main.ts\",\n \"frontend/.storybook/preview.ts\",\n \"frontend/CLAUDE.md\",\n \"frontend/docs/design-tokens.md\",\n \"frontend/eslint.config.js\",\n \"frontend/functions/_middleware.js\",\n \"frontend/functions/og/[type]/[slug].png.tsx\",\n \"frontend/index.html\",\n \"frontend/openapi-ts.config.ts\",\n \"frontend/package.json\",\n \"frontend/public/blog/anatomy_of_a_checkpoint_v3.svg\",\n \"frontend/public/blog/post_commit_state_animated.gif\",\n \"frontend/public/blog/pre_commit_state_animated.gif\",\n \"frontend/public/images/logos/agents/kiro.svg\",\n \"frontend/public/team/james.png\",\n \"frontend/public/team/rizel.png\",\n \"frontend/scripts/generate-feature-flags.mjs\",\n \"frontend/scripts/process-icons.js\",\n \"frontend/src/app/AppRouter.test.tsx\",\n \"frontend/src/app/AppRouter.tsx\",\n \"frontend/src/app/DefaultNotFound.test.tsx\",\n \"frontend/src/app/DefaultNotFound.tsx\",\n \"frontend/src/app/index.ts\",\n \"frontend/src/app/providers.tsx\",\n \"frontend/src/app/router.tsx\",\n \"frontend/src/assets/brand/logo-reveal.json\",\n \"frontend/src/assets/icons/README.md\",\n \"frontend/src/components/AgentAvatar.stories.tsx\",\n \"frontend/src/components/AgentAvatar.tsx\",\n \"frontend/src/components/Badge.stories.tsx\",\n \"frontend/src/components/Badge.tsx\",\n \"frontend/src/components/BarChart/BarChart.stories.tsx\",\n \"frontend/src/components/BarChart/BarChart.tsx\",\n \"frontend/src/components/BarChart/index.ts\",\n \"frontend/src/components/Breadcrumbs.stories.tsx\",\n \"frontend/src/components/Breadcrumbs.tsx\",\n \"frontend/src/components/BubbleChart/BubbleChart.stories.tsx\",\n \"frontend/src/components/BubbleChart/BubbleChart.tsx\",\n \"frontend/src/components/BubbleChart/index.ts\",\n \"frontend/src/components/Button.stories.tsx\",\n \"frontend/src/components/Button.tsx\",\n \"frontend/src/components/ChangeBadge.tsx\",\n \"frontend/src/components/Combobox/Combobox.stories.tsx\",\n \"frontend/src/components/Combobox/Combobox.tsx\",\n \"frontend/src/components/Combobox/index.ts\",\n \"frontend/src/components/Combobox/useCombobox.ts\",\n \"frontend/src/components/CookieBanner.tsx\",\n \"frontend/src/components/CopyCode.tsx\",\n \"frontend/src/components/Dialog.stories.tsx\",\n \"frontend/src/components/Dialog.tsx\",\n \"frontend/src/components/Drawer.tsx\",\n \"frontend/src/components/Dropdown.stories.tsx\",\n \"frontend/src/components/Dropdown.tsx\",\n \"frontend/src/components/Empty.tsx\",\n \"frontend/src/components/EntireLogo.tsx\",\n \"frontend/src/components/FeedbackDialog.tsx\",\n \"frontend/src/components/FilterPill.stories.tsx\",\n \"frontend/src/components/FilterPill.tsx\",\n \"frontend/src/components/GitHubAvatar.stories.tsx\",\n \"frontend/src/components/GitHubAvatar.test.tsx\",\n \"frontend/src/components/GitHubAvatar.tsx\",\n \"frontend/src/components/HighlightText.tsx\",\n \"frontend/src/components/Icon.stories.tsx\",\n \"frontend/src/components/Icon.tsx\",\n \"frontend/src/components/Input.stories.tsx\",\n \"frontend/src/components/Input.tsx\",\n \"frontend/src/components/Kbd.stories.tsx\",\n \"frontend/src/components/Kbd.tsx\",\n \"frontend/src/components/LineCounts.stories.tsx\",\n \"frontend/src/components/LineCounts.tsx\",\n \"frontend/src/components/ScoreGauge.tsx\",\n \"frontend/src/components/SegmentedBar.stories.tsx\",\n \"frontend/src/components/SegmentedBar.tsx\",\n \"frontend/src/components/Skeleton.stories.tsx\",\n \"frontend/src/components/Skeleton.tsx\",\n \"frontend/src/components/TabNav.stories.tsx\",\n \"frontend/src/components/TabNav.tsx\",\n \"frontend/src/components/Table.stories.tsx\",\n \"frontend/src/components/Table.tsx\",\n \"frontend/src/components/Textarea.stories.tsx\",\n \"frontend/src/components/Textarea.tsx\",\n \"frontend/src/components/ThemeSwitcher.tsx\",\n \"frontend/src/components/Toggle.stories.tsx\",\n \"frontend/src/components/Toggle.test.tsx\",\n \"frontend/src/components/Toggle.tsx\",\n \"frontend/src/components/Tooltip.stories.tsx\",\n \"frontend/src/components/Tooltip.tsx\",\n \"frontend/src/components/TreeView.stories.tsx\",\n \"frontend/src/components/TreeView.test.tsx\",\n \"frontend/src/components/TreeView.tsx\",\n \"frontend/src/components/icons/BranchIcon.tsx\",\n \"frontend/src/components/icons/CheckmarkIcon.tsx\",\n \"frontend/src/components/icons/CheckpointIcon.tsx\",\n \"frontend/src/components/icons/ChevronDownIcon.tsx\",\n \"frontend/src/components/icons/ChevronLeftIcon.tsx\",\n \"frontend/src/components/icons/ChevronRightIcon.tsx\",\n \"frontend/src/components/icons/CloseIcon.tsx\",\n \"frontend/src/components/icons/ClosedIcon.tsx\",\n \"frontend/src/components/icons/CommitIcon.tsx\",\n \"frontend/src/components/icons/CookieIcon.tsx\",\n \"frontend/src/components/icons/CopyIcon.tsx\",\n \"frontend/src/components/icons/DashboardIcon.tsx\",\n \"frontend/src/components/icons/DownloadIcon.tsx\",\n \"frontend/src/components/icons/DraftIcon.tsx\",\n \"frontend/src/components/icons/FilterIcon.tsx\",\n \"frontend/src/components/icons/FolderIcon.tsx\",\n \"frontend/src/components/icons/HeadphonesIcon.tsx\",\n \"frontend/src/components/icons/HomeIcon.tsx\",\n \"frontend/src/components/icons/InProgressIcon.tsx\",\n \"frontend/src/components/icons/InReviewIcon.tsx\",\n \"frontend/src/components/icons/MenuIcon.tsx\",\n \"frontend/src/components/icons/MergedIcon.tsx\",\n \"frontend/src/components/icons/MoreVerticalIcon.tsx\",\n \"frontend/src/components/icons/NioIcon.tsx\",\n \"frontend/src/components/icons/OpenIcon.tsx\",\n \"frontend/src/components/icons/PriorityCriticalIcon.tsx\",\n \"frontend/src/components/icons/PriorityHighIcon.tsx\",\n \"frontend/src/components/icons/PriorityLowIcon.tsx\",\n \"frontend/src/components/icons/PriorityMediumIcon.tsx\",\n \"frontend/src/components/icons/PriorityNoneIcon.tsx\",\n \"frontend/src/components/icons/RepositoryIcon.tsx\",\n \"frontend/src/components/icons/SatelliteDishIcon.tsx\",\n \"frontend/src/components/icons/SearchIcon.tsx\",\n \"frontend/src/components/icons/SidebarFloatingIcon.tsx\",\n \"frontend/src/components/icons/SidebarInlineIcon.tsx\",\n \"frontend/src/components/icons/StarIcon.tsx\",\n \"frontend/src/components/icons/index.ts\",\n \"frontend/src/components/index.ts\",\n \"frontend/src/components/score-utils.ts\",\n \"frontend/src/domains/marketing/blog/content/2026-02-10-hello-entire-world.md\",\n \"frontend/src/domains/marketing/blog/content/2026-02-14-entire-dispatch-0x0001.md\",\n \"frontend/src/domains/marketing/blog/content/2026-02-21-entire-dispatch-0x0002.md\",\n \"frontend/src/domains/marketing/blog/content/2026-02-27-entire-dispatch-0x0003.md\",\n \"frontend/src/domains/marketing/blog/content/2026-03-06-entire-dispatch-0x0004.md\",\n \"frontend/src/domains/marketing/blog/content/2026-03-13-entire-dispatch-0x0005.md\",\n \"frontend/src/domains/marketing/blog/content/2026-03-23-entire-dispatch-0x0006.md\",\n \"frontend/src/domains/marketing/blog/content/2026-03-25-the-entire-cli-how-it-works-and-where-its-headed.md\",\n \"frontend/src/domains/marketing/blog/data.ts\",\n \"frontend/src/domains/marketing/blog/index.ts\",\n \"frontend/src/domains/marketing/blog/pages/BlogListPage.tsx\",\n \"frontend/src/domains/marketing/blog/pages/BlogPostPage.tsx\",\n \"frontend/src/domains/marketing/brand/index.ts\",\n \"frontend/src/domains/marketing/brand/pages/BrandPage.tsx\",\n \"frontend/src/domains/marketing/company/index.ts\",\n \"frontend/src/domains/marketing/company/pages/CompanyPage.tsx\",\n \"frontend/src/domains/marketing/components/InstallCommand.tsx\",\n \"frontend/src/domains/marketing/components/MarkdownContent.tsx\",\n \"frontend/src/domains/marketing/components/PublicFooter.tsx\",\n \"frontend/src/domains/marketing/components/PublicHeader.tsx\",\n \"frontend/src/domains/marketing/components/PublicLayout.tsx\",\n \"frontend/src/domains/marketing/components/SystemStatus.tsx\",\n \"frontend/src/domains/marketing/components/index.ts\",\n \"frontend/src/domains/marketing/cookies/index.ts\",\n \"frontend/src/domains/marketing/cookies/pages/CookiePolicyPage.tsx\",\n \"frontend/src/domains/marketing/data.ts\",\n \"frontend/src/domains/marketing/home/AuthenticatedHomePage.tsx\",\n \"frontend/src/domains/marketing/home/hooks/useGitHubStars.ts\",\n \"frontend/src/domains/marketing/home/index.ts\",\n \"frontend/src/domains/marketing/home/pages/HomePage.tsx\",\n \"frontend/src/domains/marketing/home/pages/components/AgentSupport.tsx\",\n \"frontend/src/domains/marketing/home/pages/components/AnimatedTerminal.tsx\",\n \"frontend/src/domains/marketing/home/pages/components/CheckpointDiagram.tsx\",\n \"frontend/src/domains/marketing/home/pages/components/HeroTransition.tsx\",\n \"frontend/src/domains/marketing/home/pages/components/SessionHistory.tsx\",\n \"frontend/src/domains/marketing/press/content/2026-02-10-former-github-ceo-thomas-dohmke-raises-60-million-seed-round.md\",\n \"frontend/src/domains/marketing/press/data.ts\",\n \"frontend/src/domains/marketing/press/index.ts\",\n \"frontend/src/domains/marketing/press/pages/PressListPage.tsx\",\n \"frontend/src/domains/marketing/press/pages/PressReleasePage.tsx\",\n \"frontend/src/domains/marketing/privacy/index.ts\",\n \"frontend/src/domains/marketing/privacy/pages/PrivacyPage.tsx\",\n \"frontend/src/domains/marketing/terms/index.ts\",\n \"frontend/src/domains/marketing/terms/pages/TermsPage.tsx\",\n \"frontend/src/domains/marketing/vision/index.ts\",\n \"frontend/src/domains/marketing/vision/pages/VisionPage.tsx\",\n \"frontend/src/domains/platform/admin/api.ts\",\n \"frontend/src/domains/platform/admin/index.ts\",\n \"frontend/src/domains/platform/admin/pages/AdminPage.tsx\",\n \"frontend/src/domains/platform/auth/AuthProvider.test.tsx\",\n \"frontend/src/domains/platform/auth/AuthProvider.tsx\",\n \"frontend/src/domains/platform/auth/api.test.ts\",\n \"frontend/src/domains/platform/auth/api.ts\",\n \"frontend/src/domains/platform/auth/hooks/useAuth.ts\",\n \"frontend/src/domains/platform/auth/index.ts\",\n \"frontend/src/domains/platform/auth/pages/CliAuthPage.test.tsx\",\n \"frontend/src/domains/platform/auth/pages/CliAuthPage.tsx\",\n \"frontend/src/domains/platform/auth/pages/LoginPage.test.tsx\",\n \"frontend/src/domains/platform/auth/pages/LoginPage.tsx\",\n \"frontend/src/domains/platform/checkpoints/api.ts\",\n \"frontend/src/domains/platform/checkpoints/breadcrumbs.test.ts\",\n \"frontend/src/domains/platform/checkpoints/breadcrumbs.ts\",\n \"frontend/src/domains/platform/checkpoints/components/CheckpointHeader.tsx\",\n \"frontend/src/domains/platform/checkpoints/components/CheckpointSidebar.tsx\",\n \"frontend/src/domains/platform/checkpoints/components/CliInstallationSteps.tsx\",\n \"frontend/src/domains/platform/checkpoints/components/CommitList.test.tsx\",\n \"frontend/src/domains/platform/checkpoints/components/CommitList.tsx\",\n \"frontend/src/domains/platform/checkpoints/components/SessionDetail.tsx\",\n \"frontend/src/domains/platform/checkpoints/components/sessionUtils.ts\",\n \"frontend/src/domains/platform/checkpoints/hooks/useCommitsQuery.ts\",\n \"frontend/src/domains/platform/checkpoints/hooks/useRepoBreadcrumbOptions.ts\",\n \"frontend/src/domains/platform/checkpoints/index.ts\",\n \"frontend/src/domains/platform/checkpoints/pages/CheckpointDetailPage.tsx\",\n \"frontend/src/domains/platform/checkpoints/pages/CheckpointsPage.test.tsx\",\n \"frontend/src/domains/platform/checkpoints/pages/CheckpointsPage.tsx\",\n \"frontend/src/domains/platform/checkpoints/routeConfig.ts\",\n \"frontend/src/domains/platform/components/AppLayout.test.tsx\",\n \"frontend/src/domains/platform/components/AppLayout.tsx\",\n \"frontend/src/domains/platform/components/HeaderAccountMenu.tsx\",\n \"frontend/src/domains/platform/components/InlineEdit.tsx\",\n \"frontend/src/domains/platform/components/MarkdownContent.tsx\",\n \"frontend/src/domains/platform/components/NotFoundPage.tsx\",\n \"frontend/src/domains/platform/components/Page.tsx\",\n \"frontend/src/domains/platform/components/PrevNextNav.tsx\",\n \"frontend/src/domains/platform/components/ReauthenticateState.tsx\",\n \"frontend/src/domains/platform/components/Sidebar.tsx\",\n \"frontend/src/domains/platform/components/SplitView.stories.tsx\",\n \"frontend/src/domains/platform/components/SplitView.tsx\",\n \"frontend/src/domains/platform/components/diff/DiffViewer.test.ts\",\n \"frontend/src/domains/platform/components/diff/DiffViewer.tsx\",\n \"frontend/src/domains/platform/components/diff/FileTree.tsx\",\n \"frontend/src/domains/platform/components/diff/FilesSection.tsx\",\n \"frontend/src/domains/platform/components/diff/fileTreeUtils.test.ts\",\n \"frontend/src/domains/platform/components/diff/fileTreeUtils.ts\",\n \"frontend/src/domains/platform/components/diff/index.ts\",\n \"frontend/src/domains/platform/components/diff/statusUtils.ts\",\n \"frontend/src/domains/platform/components/diff/types.ts\",\n \"frontend/src/domains/platform/components/useMobileMenu.ts\",\n \"frontend/src/domains/platform/components/useSidebarRepos.ts\",\n \"frontend/src/domains/platform/repo-overview/api.ts\",\n \"frontend/src/domains/platform/repo-overview/components/ContributorsCard.tsx\",\n \"frontend/src/domains/platform/repo-overview/components/SmallStatCard.tsx\",\n \"frontend/src/domains/platform/repo-overview/hooks/useCommitStatsQuery.ts\",\n \"frontend/src/domains/platform/repo-overview/hooks/useContributorAgentsQuery.ts\",\n \"frontend/src/domains/platform/repo-overview/hooks/useContributorsQuery.ts\",\n \"frontend/src/domains/platform/repo-overview/hooks/usePRStatsQuery.ts\",\n \"frontend/src/domains/platform/repo-overview/pages/RepoOverviewPage.test.tsx\",\n \"frontend/src/domains/platform/repo-overview/pages/RepoOverviewPage.tsx\",\n \"frontend/src/domains/platform/repositories/api.ts\",\n \"frontend/src/domains/platform/repositories/hooks/useRepositoriesQuery.ts\",\n \"frontend/src/domains/platform/repositories/pages/RepositoriesPage.tsx\",\n \"frontend/src/domains/platform/runners/api.ts\",\n \"frontend/src/domains/platform/runners/components/AgentRunCard.test.tsx\",\n \"frontend/src/domains/platform/runners/components/AgentRunCard.tsx\",\n \"frontend/src/domains/platform/runners/components/AgentRunOutput.test.tsx\",\n \"frontend/src/domains/platform/runners/components/AgentRunOutput.tsx\",\n \"frontend/src/domains/platform/runners/components/AgentRunStatus.test.tsx\",\n \"frontend/src/domains/platform/runners/components/AgentRunStatus.tsx\",\n \"frontend/src/domains/platform/runners/components/RiskScoreBadge.test.tsx\",\n \"frontend/src/domains/platform/runners/components/RiskScoreBadge.tsx\",\n \"frontend/src/domains/platform/runners/hooks/useAgentRunsQuery.ts\",\n \"frontend/src/domains/platform/runners/pages/AgentRunDetailPage.test.tsx\",\n \"frontend/src/domains/platform/runners/pages/AgentRunDetailPage.tsx\",\n \"frontend/src/domains/platform/runners/pages/AgentRunsPage.test.tsx\",\n \"frontend/src/domains/platform/runners/pages/AgentRunsPage.tsx\",\n \"frontend/src/domains/platform/search/SearchCommandPalette.tsx\",\n \"frontend/src/domains/platform/search/SearchDropdown.test.tsx\",\n \"frontend/src/domains/platform/search/SearchDropdown.tsx\",\n \"frontend/src/domains/platform/search/SearchFilterPanel.tsx\",\n \"frontend/src/domains/platform/search/SearchResultCard.test.tsx\",\n \"frontend/src/domains/platform/search/SearchResultCard.tsx\",\n \"frontend/src/domains/platform/search/api.test.ts\",\n \"frontend/src/domains/platform/search/api.ts\",\n \"frontend/src/domains/platform/search/hooks.test.ts\",\n \"frontend/src/domains/platform/search/hooks.ts\",\n \"frontend/src/domains/platform/search/types.ts\",\n \"frontend/src/domains/platform/search/useRecentActivity.ts\",\n \"frontend/src/domains/platform/search/useRecentSearches.test.ts\",\n \"frontend/src/domains/platform/search/useRecentSearches.ts\",\n \"frontend/src/domains/platform/search/useRecentlyVisited.test.ts\",\n \"frontend/src/domains/platform/search/useRecentlyVisited.ts\",\n \"frontend/src/domains/platform/search/useSearchModal.ts\",\n \"frontend/src/domains/platform/trails/api.ts\",\n \"frontend/src/domains/platform/trails/components/AssigneeComboboxOptions.tsx\",\n \"frontend/src/domains/platform/trails/components/CreateTrailDialog.test.tsx\",\n \"frontend/src/domains/platform/trails/components/CreateTrailDialog.tsx\",\n \"frontend/src/domains/platform/trails/components/EvalCard.test.tsx\",\n \"frontend/src/domains/platform/trails/components/EvalCard.tsx\",\n \"frontend/src/domains/platform/trails/components/SemanticDiffSection.test.tsx\",\n \"frontend/src/domains/platform/trails/components/SemanticDiffSection.tsx\",\n \"frontend/src/domains/platform/trails/components/StorySection.test.tsx\",\n \"frontend/src/domains/platform/trails/components/StorySection.tsx\",\n \"frontend/src/domains/platform/trails/hooks/useOptimisticTrailMutation.ts\",\n \"frontend/src/domains/platform/trails/hooks/useRepoBreadcrumbOptions.ts\",\n \"frontend/src/domains/platform/trails/hooks/useTrailsQuery.ts\",\n \"frontend/src/domains/platform/trails/lib/assignees.ts\",\n \"frontend/src/domains/platform/trails/lib/priority.ts\",\n \"frontend/src/domains/platform/trails/lib/status.ts\",\n \"frontend/src/domains/platform/trails/lib/type.ts\",\n \"frontend/src/domains/platform/trails/pages/FilesTab.test.tsx\",\n \"frontend/src/domains/platform/trails/pages/TrailDetailPage.tsx\",\n \"frontend/src/domains/platform/trails/pages/TrailsPage.test.tsx\",\n \"frontend/src/domains/platform/trails/pages/TrailsPage.tsx\",\n \"frontend/src/domains/platform/users/api.ts\",\n \"frontend/src/domains/platform/users/components/ActivityTimeline.tsx\",\n \"frontend/src/domains/platform/users/components/CheckpointsByRepo.tsx\",\n \"frontend/src/domains/platform/users/components/ContributionChart.tsx\",\n \"frontend/src/domains/platform/users/components/ContributionsSection.tsx\",\n \"frontend/src/domains/platform/users/components/StatCard.tsx\",\n \"frontend/src/domains/platform/users/components/StatsGrid.tsx\",\n \"frontend/src/domains/platform/users/components/TimelineDay.tsx\",\n \"frontend/src/domains/platform/users/components/VirtualizedTimeline.tsx\",\n \"frontend/src/domains/platform/users/components/constants.ts\",\n \"frontend/src/domains/platform/users/hooks/useUserDashboardData.test.ts\",\n \"frontend/src/domains/platform/users/hooks/useUserDashboardData.ts\",\n \"frontend/src/domains/platform/users/index.ts\",\n \"frontend/src/domains/platform/users/pages/OverviewPage.test.tsx\",\n \"frontend/src/domains/platform/users/pages/OverviewPage.tsx\",\n \"frontend/src/domains/platform/users/pages/UserProfilePage.tsx\",\n \"frontend/src/domains/platform/users/types.ts\",\n \"frontend/src/gen/api-sdk/index.ts\",\n \"frontend/src/gen/api-sdk/react-query.gen.ts\",\n \"frontend/src/gen/api-sdk/sdk.gen.ts\",\n \"frontend/src/gen/api-sdk/types.gen.ts\",\n \"frontend/src/hooks/useDebouncedValue.ts\",\n \"frontend/src/hooks/usePageTitle.ts\",\n \"frontend/src/index.css\",\n \"frontend/src/lib/agents.ts\",\n \"frontend/src/lib/api-sdk/api-sdk-client.test.ts\",\n \"frontend/src/lib/api-sdk/api-sdk-client.ts\",\n \"frontend/src/lib/api-sdk/runtime.ts\",\n \"frontend/src/lib/api/base-url.ts\",\n \"frontend/src/lib/api/client.test.ts\",\n \"frontend/src/lib/api/client.ts\",\n \"frontend/src/lib/api/index.ts\",\n \"frontend/src/lib/clipboard.ts\",\n \"frontend/src/lib/cookieConsent.test.tsx\",\n \"frontend/src/lib/cookieConsent.tsx\",\n \"frontend/src/lib/date.test.ts\",\n \"frontend/src/lib/date.ts\",\n \"frontend/src/lib/featureFlags.test.ts\",\n \"frontend/src/lib/featureFlags.ts\",\n \"frontend/src/lib/format.ts\",\n \"frontend/src/lib/queryClient.ts\",\n \"frontend/src/lib/theme.test","status":"success"},"type":"tool_use"}]} -{"v":1,"agent":"claude-code","cli_version":"0.5.1","type":"assistant","ts":"2026-03-27T08:27:44.990Z","id":"msg_016CLe74PwSibZnsHpNYDemt","input_tokens":1,"output_tokens":286,"content":[{"text":"There's a mystery checkpoint `edb8621b1e02` between the 6th and 7th commits. It has a massive `files_touched` — basically the entire repo. Let me check its attribution.","type":"text"},{"id":"toolu_01DrNpC9qHCNTymvM8PoHNKq","input":{"file_path":"/tmp/claude-tool-results/byuu5r01j.txt","offset":1,"limit":20},"name":"Read","result":{"output":" 1→{\n 2→ \"checkpoint_id\": \"edb8621b1e02\",\n 3→ \"checkpoints_count\": 1,\n 4→ \"files_touched\": [\n 5→ \".claude/settings.json\",\n 6→ \".codex/config.toml\",\n 7→ \".codex/hooks.json\",\n 8→ \".git-blame-ignore-revs\",\n 9→ \".github/workflows/api-tests.yml\",\n 10→ \".github/workflows/deploy-api-staging.yml\",\n 11→ \".github/workflows/deploy-api.yml\",\n 12→ \".github/workflows/deploy-frontend-staging.yml\",\n 13→ \".github/workflows/deploy-frontend.yml\",\n 14→ \".github/workflows/deploy-storybook.yml\",\n 15→ \".github/workflows/frontend-tests.yml\",\n 16→ \".github/workflows/rollback-staging.yml\",\n 17→ \".gitignore\",\n 18→ \".mcp.json\",\n 19→ \".npmrc\",\n 20→ \".opencode/plugins/entire.ts\",","status":"success","file":{"filePath":"/tmp/claude-tool-results/byuu5r01j.txt","numLines":20}},"type":"tool_use"}]} +{"v":1,"agent":"claude-code","cli_version":"0.5.1","type":"assistant","ts":"2026-03-27T08:27:44.990Z","id":"msg_016CLe74PwSibZnsHpNYDemt","input_tokens":1,"output_tokens":286,"content":[{"thinking":"","type":"thinking"},{"text":"There's a mystery checkpoint `edb8621b1e02` between the 6th and 7th commits. It has a massive `files_touched` — basically the entire repo. Let me check its attribution.","type":"text"},{"id":"toolu_01DrNpC9qHCNTymvM8PoHNKq","input":{"file_path":"/tmp/claude-tool-results/byuu5r01j.txt","offset":1,"limit":20},"name":"Read","result":{"output":" 1→{\n 2→ \"checkpoint_id\": \"edb8621b1e02\",\n 3→ \"checkpoints_count\": 1,\n 4→ \"files_touched\": [\n 5→ \".claude/settings.json\",\n 6→ \".codex/config.toml\",\n 7→ \".codex/hooks.json\",\n 8→ \".git-blame-ignore-revs\",\n 9→ \".github/workflows/api-tests.yml\",\n 10→ \".github/workflows/deploy-api-staging.yml\",\n 11→ \".github/workflows/deploy-api.yml\",\n 12→ \".github/workflows/deploy-frontend-staging.yml\",\n 13→ \".github/workflows/deploy-frontend.yml\",\n 14→ \".github/workflows/deploy-storybook.yml\",\n 15→ \".github/workflows/frontend-tests.yml\",\n 16→ \".github/workflows/rollback-staging.yml\",\n 17→ \".gitignore\",\n 18→ \".mcp.json\",\n 19→ \".npmrc\",\n 20→ \".opencode/plugins/entire.ts\",","status":"success","file":{"filePath":"/tmp/claude-tool-results/byuu5r01j.txt","numLines":20}},"type":"tool_use"}]} {"v":1,"agent":"claude-code","cli_version":"0.5.1","type":"assistant","ts":"2026-03-27T08:27:49.624Z","id":"msg_01EHDSJ1FmxH9qSBnou9qjAi","input_tokens":1,"output_tokens":257,"content":[{"id":"toolu_011vQtN8K7M5jaoxS9ZttXLG","input":{"command":"cd /repo/entire.io \u0026\u0026 git show 90601f720:ed/b8621b1e02/0/metadata.json 2\u003e/dev/null | jq '.initial_attribution'","description":"Get attribution for the mystery checkpoint"},"name":"Bash","result":{"output":"{\n \"calculated_at\": \"2026-03-26T22:01:42.800628Z\",\n \"agent_lines\": 0,\n \"human_added\": 0,\n \"human_modified\": 237,\n \"human_removed\": 34,\n \"total_committed\": 171,\n \"agent_percentage\": 0\n}","status":"success"},"type":"tool_use"},{"id":"toolu_011z8sMGXMCxBQ8LfAxKE698","input":{"command":"cd /repo/entire.io \u0026\u0026 git show 90601f720:ed/b8621b1e02/0/metadata.json 2\u003e/dev/null | jq '{checkpoint_id, created_at, branch, agent, turn_id, checkpoint_transcript_start}'","description":"Get context for the mystery checkpoint"},"name":"Bash","type":"tool_use"}]} -{"v":1,"agent":"claude-code","cli_version":"0.5.1","type":"assistant","ts":"2026-03-27T08:28:04.238Z","id":"msg_01EmSyUwW8hUFcS5cPwo9XYZ","input_tokens":1,"output_tokens":358,"content":[{"id":"toolu_01GihiK7W3jfLgEBi4pBqSs9","input":{"command":"cd /repo/entire.io \u0026\u0026 git show 90601f720:ed/b8621b1e02/0/metadata.json 2\u003e/dev/null | jq '.session_id'","description":"Check session ID of mystery checkpoint"},"name":"Bash","result":{"output":"\"3cf08448-2cce-4300-a7a9-dcf877a4f93d\"","status":"success"},"type":"tool_use"},{"id":"toolu_01HqxhDTGnMStNWTvLEsHzrQ","input":{"command":"cd /repo/entire.io \u0026\u0026 git show 90601f720:ed/b8621b1e02/metadata.json 2\u003e/dev/null | jq .","description":"Top-level metadata of mystery checkpoint"},"name":"Bash","type":"tool_use"}]} +{"v":1,"agent":"claude-code","cli_version":"0.5.1","type":"assistant","ts":"2026-03-27T08:28:04.238Z","id":"msg_01EmSyUwW8hUFcS5cPwo9XYZ","input_tokens":1,"output_tokens":358,"content":[{"thinking":"","type":"thinking"},{"id":"toolu_01GihiK7W3jfLgEBi4pBqSs9","input":{"command":"cd /repo/entire.io \u0026\u0026 git show 90601f720:ed/b8621b1e02/0/metadata.json 2\u003e/dev/null | jq '.session_id'","description":"Check session ID of mystery checkpoint"},"name":"Bash","result":{"output":"\"3cf08448-2cce-4300-a7a9-dcf877a4f93d\"","status":"success"},"type":"tool_use"},{"id":"toolu_01HqxhDTGnMStNWTvLEsHzrQ","input":{"command":"cd /repo/entire.io \u0026\u0026 git show 90601f720:ed/b8621b1e02/metadata.json 2\u003e/dev/null | jq .","description":"Top-level metadata of mystery checkpoint"},"name":"Bash","type":"tool_use"}]} {"v":1,"agent":"claude-code","cli_version":"0.5.1","type":"user","ts":"2026-03-27T08:28:45.887Z","content":[{"id":"d56b8d8c-c853-4ddf-8eac-e394409ff0c4","text":"[Request interrupted by user]"}]} {"v":1,"agent":"claude-code","cli_version":"0.5.1","type":"user","ts":"2026-03-27T08:28:47.383Z","content":[{"id":"2df242e8-787e-4a5a-acc2-e8e7ece819aa","text":"are you stuck?"}]} {"v":1,"agent":"claude-code","cli_version":"0.5.1","type":"assistant","ts":"2026-03-27T08:31:50.929Z","id":"fb8ac970-7ed2-48cb-8758-56a998178021","content":[{"text":"API Error: 529 {\"type\":\"error\",\"error\":{\"type\":\"overloaded_error\",\"message\":\"Overloaded. https://docs.claude.com/en/api/errors\"},\"request_id\":\"req_011CZTGqnDZawLDAuQ7vCkT5\"}","type":"text"}]} {"v":1,"agent":"claude-code","cli_version":"0.5.1","type":"user","ts":"2026-03-27T08:32:16.552Z","content":[{"id":"1c80d63a-6880-4574-80ba-a89914435cee","text":"are you stuck?"}]} {"v":1,"agent":"claude-code","cli_version":"0.5.1","type":"assistant","ts":"2026-03-27T08:32:33.900Z","id":"msg_01BPUN1PnxVSuZLANuvEqwUA","input_tokens":3,"output_tokens":466,"content":[{"text":"\n\nNo, I have the full picture now. Here's what happened:\n\n**The commit `b91ac068` deletes 15 lines, adds 0 — but attribution says `agent_lines: 36`, `human_added: 587`, `total_committed: 623`.** That's clearly wrong.\n\n**Root cause: `checkpoints_count: 0` with no shadow branch.**\n\nWhen there are no shadow branch checkpoints (`shadowRef == nil`), the code at `manual_commit_condensation.go:407` falls back to:\n\n```go\nshadowTree = headTree\n```\n\nThis means `shadowTree == headTree`, so the \"agent work\" calculation (`diffLines(baseContent, shadowContent)`) becomes `diffLines(baseContent, headContent)` — it's measuring the entire diff between the attribution base and HEAD for those files, and **attributing all additions to the agent**.\n\nThe `files_touched` for this checkpoint includes both `SmallStatCard.tsx` and `RepoOverviewPage.tsx`. These are large files. The diff between attribution base and HEAD for all added lines in those files is 623 — that's just the total line count of added content when diffing the full files, not the 15-line deletion that this commit actually represents.\n\n**The 587 \"human_added\" lines** come from `getAllChangedFiles` finding all the other files that changed between base and HEAD (non-agent files), but since `shadowTree == headTree`, there are no \"post-checkpoint user edits\" to separate out. The accumulated `PromptAttributions` were empty too (no checkpoints = no prompt attribution data).\n\n**In short**: with `checkpoints_count: 0` and no shadow branch, the attribution has no baseline for what the agent actually did vs what the user did. It falls back to treating `base → HEAD` as agent work, which is nonsense for a deletion-only commit that the agent didn't really contribute to in this interval.\n\nDoes this match what you were suspicious about, or were you looking at a different angle?","type":"text"}]} {"v":1,"agent":"claude-code","cli_version":"0.5.1","type":"user","ts":"2026-03-27T08:33:15.184Z","content":[{"id":"17363fe3-3a2e-47e1-acca-c7a51bfad8b7","text":"but why would there then be so many human_added lines"}]} -{"v":1,"agent":"claude-code","cli_version":"0.5.1","type":"assistant","ts":"2026-03-27T08:34:43.108Z","id":"msg_01QTu2KXdYX2RH68rfb4H1ti","input_tokens":3,"output_tokens":4417,"content":[{"text":"Good question — let me trace it precisely.\n\n`human_added` comes from this path in `CalculateAttributionWithAccumulated`:\n\n```go\n// Lines 256-264: non-agent files\nfor _, filePath := range allChangedFiles {\n if slices.Contains(filesTouched, filePath) {\n continue // Skip agent-touched files\n }\n _, userAdded, _ := diffLines(baseContent, headContent)\n allUserEditsToNonAgentFiles += userAdded\n}\n```\n\nSince `PromptAttributions` is empty and `shadowTree == headTree` (no checkpoints), the only source of `human_added` is `postToNonAgentFiles` — files that differ between `AttributionBaseCommit` and HEAD that are **not** in `filesTouched`.\n\nBut this commit only touches the 2 files in `filesTouched`. If `AttributionBaseCommit` were correctly set to the previous commit (`f84785e5e`), there'd be **zero** non-agent file changes, and `human_added` would be 0.\n\n**587 human_added means the `AttributionBaseCommit` was stale** — pointing far back in history, not to the previous commit. The \"human lines\" are actually all the additions across dozens of files that changed between that old base and HEAD — other people's commits, merges, etc., all counted as \"human added.\"\n\nSame for `agent_lines: 36` — that's `diffLines(staleBase, head).added` for the 2 `filesTouched` files. Since those files changed a lot across the full polish series, the stale base produces a large diff even though this specific commit only deletes lines.\n\nThe session state file is gone so I can't verify which commit it was stuck on, but the numbers are consistent with the attribution base never advancing past the original session start (before all 7 polish commits). Likely the state update at `manual_commit_hooks.go:1101` didn't stick for this condensation — possibly because `checkpoints_count: 0` hit a different code path that skipped the state update.","type":"text"}]} +{"v":1,"agent":"claude-code","cli_version":"0.5.1","type":"assistant","ts":"2026-03-27T08:34:43.108Z","id":"msg_01QTu2KXdYX2RH68rfb4H1ti","input_tokens":3,"output_tokens":4417,"content":[{"thinking":"","type":"thinking"},{"text":"Good question — let me trace it precisely.\n\n`human_added` comes from this path in `CalculateAttributionWithAccumulated`:\n\n```go\n// Lines 256-264: non-agent files\nfor _, filePath := range allChangedFiles {\n if slices.Contains(filesTouched, filePath) {\n continue // Skip agent-touched files\n }\n _, userAdded, _ := diffLines(baseContent, headContent)\n allUserEditsToNonAgentFiles += userAdded\n}\n```\n\nSince `PromptAttributions` is empty and `shadowTree == headTree` (no checkpoints), the only source of `human_added` is `postToNonAgentFiles` — files that differ between `AttributionBaseCommit` and HEAD that are **not** in `filesTouched`.\n\nBut this commit only touches the 2 files in `filesTouched`. If `AttributionBaseCommit` were correctly set to the previous commit (`f84785e5e`), there'd be **zero** non-agent file changes, and `human_added` would be 0.\n\n**587 human_added means the `AttributionBaseCommit` was stale** — pointing far back in history, not to the previous commit. The \"human lines\" are actually all the additions across dozens of files that changed between that old base and HEAD — other people's commits, merges, etc., all counted as \"human added.\"\n\nSame for `agent_lines: 36` — that's `diffLines(staleBase, head).added` for the 2 `filesTouched` files. Since those files changed a lot across the full polish series, the stale base produces a large diff even though this specific commit only deletes lines.\n\nThe session state file is gone so I can't verify which commit it was stuck on, but the numbers are consistent with the attribution base never advancing past the original session start (before all 7 polish commits). Likely the state update at `manual_commit_hooks.go:1101` didn't stick for this condensation — possibly because `checkpoints_count: 0` hit a different code path that skipped the state update.","type":"text"}]} {"v":1,"agent":"claude-code","cli_version":"0.5.1","type":"user","ts":"2026-03-27T08:37:34.964Z","content":[{"id":"45a02e97-48bf-4120-a842-cc6ed9e5df42","text":"what could be a fix here? Or a plan for better investigation?"}]} {"v":1,"agent":"claude-code","cli_version":"0.5.1","type":"assistant","ts":"2026-03-27T08:37:53.178Z","id":"msg_017nm66D6bSPUPWUrCNcFkR6","input_tokens":3,"output_tokens":501,"content":[{"id":"toolu_01TgvDnPjoZ3t58aBftQ7R21","input":{"description":"Investigate attribution base staleness","subagent_type":"Explore","prompt":"I'm investigating a bug where the `AttributionBaseCommit` in session state becomes stale, leading to incorrect attribution numbers. I need to understand all the code paths where `AttributionBaseCommit` gets set or updated, and specifically how the post-commit condensation flow works when `checkpoints_count` is 0 (no shadow branch checkpoints).\n\nKey areas to explore thoroughly:\n\n1. In `cmd/entire/cli/strategy/manual_commit_hooks.go`: the full PostCommit handler flow — how does it decide whether to condense? What happens when there are no shadow branch checkpoints? Look at the `condenseSessions` function call and what happens before/after it. Pay special attention to early returns or error paths that might skip the `state.AttributionBaseCommit = newHead` update at line ~1101.\n\n2. In `cmd/entire/cli/strategy/manual_commit_condensation.go`: the `condenseSession` / `condenseSessions` function — does it handle the case where `StepCount == 0` differently? Is there a path where it returns early without the caller updating the attribution base?\n\n3. The carry-forward logic — after condensation, how are `remainingFiles` computed and how does `FilesTouched` get repopulated? Could this cause the attribution base to be misaligned?\n\n4. The `extractSessionData` function — when there's no shadow branch, what session data gets extracted? Does this affect whether condensation proceeds?\n\n5. Any path where the session state save (after updating AttributionBaseCommit) could fail silently or be overwritten.\n\nPlease search very thoroughly — read the full PostCommit handler, the condensation entry points, and any error/early-return paths. I need to understand every scenario where AttributionBaseCommit might NOT get updated after a commit."},"name":"Agent","result":{"output":"","status":"success"},"type":"tool_use"}]} -{"v":1,"agent":"claude-code","cli_version":"0.5.1","type":"assistant","ts":"2026-03-27T08:39:05.648Z","id":"msg_015nT51tJ1PUAi3X81qzF4oT","input_tokens":1,"output_tokens":371,"content":[{"text":"Let me verify the key finding.","type":"text"},{"id":"toolu_01FxS2UibtZDMEaqTRNkw55T","input":{"pattern":"func.*updateBaseCommitIfChanged","path":"/repo/cli/cmd/entire/cli/strategy/manual_commit_hooks.go","output_mode":"content","-n":true},"name":"Grep","result":{"output":"1133:func (s *ManualCommitStrategy) updateBaseCommitIfChanged(ctx context.Context, state *SessionState, newHead string) {","status":"success"},"type":"tool_use"}]} +{"v":1,"agent":"claude-code","cli_version":"0.5.1","type":"assistant","ts":"2026-03-27T08:39:05.648Z","id":"msg_015nT51tJ1PUAi3X81qzF4oT","input_tokens":1,"output_tokens":371,"content":[{"thinking":"","type":"thinking"},{"text":"Let me verify the key finding.","type":"text"},{"id":"toolu_01FxS2UibtZDMEaqTRNkw55T","input":{"pattern":"func.*updateBaseCommitIfChanged","path":"/repo/cli/cmd/entire/cli/strategy/manual_commit_hooks.go","output_mode":"content","-n":true},"name":"Grep","result":{"output":"1133:func (s *ManualCommitStrategy) updateBaseCommitIfChanged(ctx context.Context, state *SessionState, newHead string) {","status":"success"},"type":"tool_use"}]} {"v":1,"agent":"claude-code","cli_version":"0.5.1","type":"assistant","ts":"2026-03-27T08:39:10.516Z","id":"msg_01BDXpJnmbvHVh6XqPYsPwYg","input_tokens":1,"output_tokens":117,"content":[{"id":"toolu_01RfAT3zijoJSQp2eT1ZmA7w","input":{"file_path":"/repo/cli/cmd/entire/cli/strategy/manual_commit_hooks.go","offset":1133,"limit":30},"name":"Read","result":{"output":" 1133→func (s *ManualCommitStrategy) updateBaseCommitIfChanged(ctx context.Context, state *SessionState, newHead string) {\n 1134→\tlogCtx := logging.WithComponent(ctx, \"checkpoint\")\n 1135→\t// Only update ACTIVE sessions. IDLE/ENDED sessions are kept around for\n 1136→\t// LastCheckpointID reuse and should not be advanced to HEAD.\n 1137→\tif !state.Phase.IsActive() {\n 1138→\t\tlogging.Debug(logCtx, \"post-commit: updateBaseCommitIfChanged skipped non-active session\",\n 1139→\t\t\tslog.String(\"session_id\", state.SessionID),\n 1140→\t\t\tslog.String(\"phase\", string(state.Phase)),\n 1141→\t\t)\n 1142→\t\treturn\n 1143→\t}\n 1144→\tif state.BaseCommit != newHead {\n 1145→\t\tstate.BaseCommit = newHead\n 1146→\t\tlogging.Debug(logCtx, \"post-commit: updated BaseCommit\",\n 1147→\t\t\tslog.String(\"session_id\", state.SessionID),\n 1148→\t\t\tslog.String(\"new_head\", truncateHash(newHead)),\n 1149→\t\t)\n 1150→\t}\n 1151→}\n 1152→\n 1153→// postCommitUpdateBaseCommitOnly updates BaseCommit for all sessions on the current\n 1154→// worktree when a commit has no Entire-Checkpoint trailer. This prevents BaseCommit\n 1155→// from going stale, which would cause future PrepareCommitMsg calls to skip the\n 1156→// session (BaseCommit != currentHeadHash filter).\n 1157→//\n 1158→// Unlike the full PostCommit flow, this does NOT fire EventGitCommit or trigger\n 1159→// condensation — it only keeps BaseCommit in sync with HEAD.\n 1160→func (s *ManualCommitStrategy) postCommitUpdateBaseCommitOnly(ctx context.Context, head *plumbing.Reference) {\n 1161→\tlogCtx := logging.WithComponent(ctx, \"checkpoint\")\n 1162→\tworktreePath, err := paths.WorktreeRoot(ctx)","status":"success","file":{"filePath":"/repo/cli/cmd/entire/cli/strategy/manual_commit_hooks.go","numLines":30}},"type":"tool_use"}]} {"v":1,"agent":"claude-code","cli_version":"0.5.1","type":"assistant","ts":"2026-03-27T08:39:14.322Z","id":"msg_01AuMJSTXEQuyATZKpkGvH2z","input_tokens":1,"output_tokens":133,"content":[{"text":"Now let me see where this is called vs `condenseAndUpdateState`.","type":"text"},{"id":"toolu_01QP1VPiga7w3FR1WH2BHty7","input":{"file_path":"/repo/cli/cmd/entire/cli/strategy/manual_commit_hooks.go","offset":629,"limit":60},"name":"Read","result":{"output":" 629→func (h *postCommitActionHandler) HandleCondense(state *session.State) error {\n 630→\tlogCtx := logging.WithComponent(h.ctx, \"checkpoint\")\n 631→\tshouldCondense := h.shouldCondenseWithOverlapCheck(state.Phase.IsActive(), state.LastInteractionTime)\n 632→\n 633→\tlogging.Debug(logCtx, \"post-commit: HandleCondense decision\",\n 634→\t\tslog.String(\"session_id\", state.SessionID),\n 635→\t\tslog.String(\"phase\", string(state.Phase)),\n 636→\t\tslog.Bool(\"has_new\", h.hasNew),\n 637→\t\tslog.Bool(\"should_condense\", shouldCondense),\n 638→\t\tslog.String(\"shadow_branch\", h.shadowBranchName),\n 639→\t)\n 640→\n 641→\tif shouldCondense {\n 642→\t\th.condensed = h.s.condenseAndUpdateState(h.ctx, h.repo, h.checkpointID, state, h.head, h.shadowBranchName, h.shadowBranchesToDelete, h.committedFileSet, condenseOpts{\n 643→\t\t\tshadowRef: h.shadowRef,\n 644→\t\t\theadTree: h.headTree,\n 645→\t\t\trepoDir: h.repoDir,\n 646→\t\t\theadCommitHash: h.newHead,\n 647→\t\t})\n 648→\t} else {\n 649→\t\th.s.updateBaseCommitIfChanged(h.ctx, state, h.newHead)\n 650→\t}\n 651→\treturn nil\n 652→}\n 653→\n 654→func (h *postCommitActionHandler) HandleCondenseIfFilesTouched(state *session.State) error {\n 655→\tlogCtx := logging.WithComponent(h.ctx, \"checkpoint\")\n 656→\tshouldCondense := len(state.FilesTouched) \u003e 0 \u0026\u0026 h.shouldCondenseWithOverlapCheck(state.Phase.IsActive(), state.LastInteractionTime)\n 657→\n 658→\tlogging.Debug(logCtx, \"post-commit: HandleCondenseIfFilesTouched decision\",\n 659→\t\tslog.String(\"session_id\", state.SessionID),\n 660→\t\tslog.String(\"phase\", string(state.Phase)),\n 661→\t\tslog.Bool(\"has_new\", h.hasNew),\n 662→\t\tslog.Int(\"files_touched\", len(state.FilesTouched)),\n 663→\t\tslog.Bool(\"should_condense\", shouldCondense),\n 664→\t\tslog.String(\"shadow_branch\", h.shadowBranchName),\n 665→\t)\n 666→\n 667→\tif shouldCondense {\n 668→\t\th.condensed = h.s.condenseAndUpdateState(h.ctx, h.repo, h.checkpointID, state, h.head, h.shadowBranchName, h.shadowBranchesToDelete, h.committedFileSet, condenseOpts{\n 669→\t\t\tshadowRef: h.shadowRef,\n 670→\t\t\theadTree: h.headTree,\n 671→\t\t\trepoDir: h.repoDir,\n 672→\t\t\theadCommitHash: h.newHead,\n 673→\t\t})\n 674→\t} else {\n 675→\t\th.s.updateBaseCommitIfChanged(h.ctx, state, h.newHead)\n 676→\t}\n 677→\treturn nil\n 678→}\n 679→\n 680→// shouldCondenseWithOverlapCheck returns true if the session should be condensed\n 681→// into this commit. Active sessions with recent interaction always condense\n 682→// (bypasses overlap check). Stale ACTIVE and IDLE/ENDED sessions require\n 683→// file overlap evidence between tracked files and committed files.\n 684→func (h *postCommitActionHandler) shouldCondenseWithOverlapCheck(isActive bool, lastInteraction *time.Time) bool {\n 685→\tif !h.hasNew {\n 686→\t\treturn false\n 687→\t}\n 688→\t// ACTIVE sessions with recent interaction: skip the overlap check.","status":"success","file":{"filePath":"/repo/cli/cmd/entire/cli/strategy/manual_commit_hooks.go","numLines":60}},"type":"tool_use"}]} {"v":1,"agent":"claude-code","cli_version":"0.5.1","type":"assistant","ts":"2026-03-27T08:39:37.044Z","id":"msg_01QgW6dRW2UT1CkKtPd6Wncp","input_tokens":1,"output_tokens":653,"content":[{"text":"Found it. Here's what happened and what to do about it:\n\n---\n\n## The Bug\n\n`updateBaseCommitIfChanged` (line 1133-1151) updates `BaseCommit` but **never updates `AttributionBaseCommit`**:\n\n```go\nfunc (s *ManualCommitStrategy) updateBaseCommitIfChanged(...) {\n if state.BaseCommit != newHead {\n state.BaseCommit = newHead // ✓ updated\n // AttributionBaseCommit = ??? // ✗ NOT updated\n }\n}\n```\n\nThis gets called at lines 649 and 675 when `shouldCondense` is false — i.e., when the session has no new content to condense into this commit (e.g., a user-only commit, or the session was idle with no checkpoints).\n\n**What happened with your commit**: Between the 6th and 7th polish commits, there was a commit where condensation was skipped for this session. `BaseCommit` advanced to the new HEAD, but `AttributionBaseCommit` stayed at the old value. Then when the 7th commit did condense, it diffed from the stale base → HEAD, producing the inflated 623 lines.\n\nThere's a second path too: if `condenseAndUpdateState` fails (line 1086-1093), it returns false without updating `AttributionBaseCommit`, but the state is still saved.\n\n## Fix Options\n\n**Quick fix** — update `AttributionBaseCommit` alongside `BaseCommit`:\n\n```go\nfunc (s *ManualCommitStrategy) updateBaseCommitIfChanged(...) {\n if !state.Phase.IsActive() { return }\n if state.BaseCommit != newHead {\n state.BaseCommit = newHead\n state.AttributionBaseCommit = newHead // \u003c-- add this\n }\n}\n```\n\n**But this might be wrong** — if the session has accumulated prompt attributions that haven't been condensed yet, resetting `AttributionBaseCommit` would lose that tracking window. We'd need to also clear `PromptAttributions` to stay consistent.\n\n## Better Investigation Plan\n\n1. **Add a log line** in `updateBaseCommitIfChanged` when `AttributionBaseCommit != BaseCommit` after the update — this would show exactly when drift occurs in production\n2. **Add a validation check** at condensation time: if `AttributionBaseCommit` is an ancestor of `BaseCommit` (not equal), log a warning with the gap size — we'd see exactly how far stale it got\n3. **Write a regression test**: create a session, make a commit that skips condensation (no new content), then make another that does condense — verify `AttributionBaseCommit` is correct\n\nWant me to implement the fix and the test?","type":"text"}]} {"v":1,"agent":"claude-code","cli_version":"0.5.1","type":"user","ts":"2026-03-27T08:44:35.564Z","content":[{"id":"681496dc-8e44-4c7c-8333-53a91c3fa051","text":"Let's write a test replicating what we think caused the issue in the checkpoint, then we can work on getting it fixed"}]} {"v":1,"agent":"claude-code","cli_version":"0.5.1","type":"assistant","ts":"2026-03-27T08:44:45.726Z","id":"msg_01DuJJ9Mqj6UrAqdRXfPUxSB","input_tokens":3,"output_tokens":315,"content":[{"id":"toolu_01JSZAukwiA68Rw7SHT84ieR","input":{"description":"Find existing attribution tests","subagent_type":"Explore","prompt":"I need to understand the existing test patterns for attribution and post-commit condensation in this codebase. Please find and read:\n\n1. `cmd/entire/cli/strategy/manual_commit_attribution_test.go` — read the full file to understand how attribution tests are structured\n2. `cmd/entire/cli/integration_test/attribution_test.go` — read the full file to understand integration test patterns for attribution\n3. In `cmd/entire/cli/strategy/manual_commit_test.go` — find any tests related to condensation, post-commit hooks, or attribution base commit updates. Search for \"condense\", \"attribution\", \"PostCommit\", \"updateBaseCommit\" in that file and read the surrounding test functions.\n4. Any test helpers used (like `NewFeatureBranchEnv`, `TestEnv`, etc.) — find where they're defined and understand the setup patterns.\n\nBe very thorough — I need to understand the full test infrastructure to write a new regression test."},"name":"Agent","result":{"output":"","status":"success"},"type":"tool_use"}]} -{"v":1,"agent":"claude-code","cli_version":"0.5.1","type":"assistant","ts":"2026-03-27T08:47:57.248Z","id":"msg_01BwssCLToikuqiHdnvntioy","input_tokens":1,"output_tokens":6844,"content":[{"text":"Let me check one more thing about the non-trailer commit path before writing the test.","type":"text"},{"id":"toolu_017vpEfYzj8Ws1BttRzFdzMT","input":{"file_path":"/repo/cli/cmd/entire/cli/strategy/manual_commit_hooks.go","offset":1153,"limit":50},"name":"Read","result":{"output":" 1153→// postCommitUpdateBaseCommitOnly updates BaseCommit for all sessions on the current\n 1154→// worktree when a commit has no Entire-Checkpoint trailer. This prevents BaseCommit\n 1155→// from going stale, which would cause future PrepareCommitMsg calls to skip the\n 1156→// session (BaseCommit != currentHeadHash filter).\n 1157→//\n 1158→// Unlike the full PostCommit flow, this does NOT fire EventGitCommit or trigger\n 1159→// condensation — it only keeps BaseCommit in sync with HEAD.\n 1160→func (s *ManualCommitStrategy) postCommitUpdateBaseCommitOnly(ctx context.Context, head *plumbing.Reference) {\n 1161→\tlogCtx := logging.WithComponent(ctx, \"checkpoint\")\n 1162→\tworktreePath, err := paths.WorktreeRoot(ctx)\n 1163→\tif err != nil {\n 1164→\t\treturn // Silent failure — hooks must be resilient\n 1165→\t}\n 1166→\n 1167→\tsessions, err := s.findSessionsForWorktree(ctx, worktreePath)\n 1168→\tif err != nil || len(sessions) == 0 {\n 1169→\t\treturn\n 1170→\t}\n 1171→\n 1172→\tnewHead := head.Hash().String()\n 1173→\tfor _, state := range sessions {\n 1174→\t\t// Only update active sessions. Idle/ended sessions are kept around for\n 1175→\t\t// LastCheckpointID reuse and should not be advanced to HEAD.\n 1176→\t\tif !state.Phase.IsActive() {\n 1177→\t\t\tcontinue\n 1178→\t\t}\n 1179→\t\tif state.BaseCommit != newHead {\n 1180→\t\t\tlogging.Debug(logCtx, \"post-commit (no trailer): updating BaseCommit\",\n 1181→\t\t\t\tslog.String(\"session_id\", state.SessionID),\n 1182→\t\t\t\tslog.String(\"old_base\", truncateHash(state.BaseCommit)),\n 1183→\t\t\t\tslog.String(\"new_head\", truncateHash(newHead)),\n 1184→\t\t\t)\n 1185→\t\t\tstate.BaseCommit = newHead\n 1186→\t\t\tif err := s.saveSessionState(ctx, state); err != nil {\n 1187→\t\t\t\tlogging.Warn(logCtx, \"failed to update session state\",\n 1188→\t\t\t\t\tslog.String(\"session_id\", state.SessionID),\n 1189→\t\t\t\t\tslog.String(\"error\", err.Error()))\n 1190→\t\t\t}\n 1191→\t\t}\n 1192→\t}\n 1193→}\n 1194→\n 1195→// truncateHash safely truncates a git hash to 7 chars for logging.\n 1196→func truncateHash(h string) string {\n 1197→\tif len(h) \u003e 7 {\n 1198→\t\treturn h[:7]\n 1199→\t}\n 1200→\treturn h\n 1201→}\n 1202→","status":"success","file":{"filePath":"/repo/cli/cmd/entire/cli/strategy/manual_commit_hooks.go","numLines":50}},"type":"tool_use"}]} +{"v":1,"agent":"claude-code","cli_version":"0.5.1","type":"assistant","ts":"2026-03-27T08:47:57.248Z","id":"msg_01BwssCLToikuqiHdnvntioy","input_tokens":1,"output_tokens":6844,"content":[{"thinking":"","type":"thinking"},{"text":"Let me check one more thing about the non-trailer commit path before writing the test.","type":"text"},{"id":"toolu_017vpEfYzj8Ws1BttRzFdzMT","input":{"file_path":"/repo/cli/cmd/entire/cli/strategy/manual_commit_hooks.go","offset":1153,"limit":50},"name":"Read","result":{"output":" 1153→// postCommitUpdateBaseCommitOnly updates BaseCommit for all sessions on the current\n 1154→// worktree when a commit has no Entire-Checkpoint trailer. This prevents BaseCommit\n 1155→// from going stale, which would cause future PrepareCommitMsg calls to skip the\n 1156→// session (BaseCommit != currentHeadHash filter).\n 1157→//\n 1158→// Unlike the full PostCommit flow, this does NOT fire EventGitCommit or trigger\n 1159→// condensation — it only keeps BaseCommit in sync with HEAD.\n 1160→func (s *ManualCommitStrategy) postCommitUpdateBaseCommitOnly(ctx context.Context, head *plumbing.Reference) {\n 1161→\tlogCtx := logging.WithComponent(ctx, \"checkpoint\")\n 1162→\tworktreePath, err := paths.WorktreeRoot(ctx)\n 1163→\tif err != nil {\n 1164→\t\treturn // Silent failure — hooks must be resilient\n 1165→\t}\n 1166→\n 1167→\tsessions, err := s.findSessionsForWorktree(ctx, worktreePath)\n 1168→\tif err != nil || len(sessions) == 0 {\n 1169→\t\treturn\n 1170→\t}\n 1171→\n 1172→\tnewHead := head.Hash().String()\n 1173→\tfor _, state := range sessions {\n 1174→\t\t// Only update active sessions. Idle/ended sessions are kept around for\n 1175→\t\t// LastCheckpointID reuse and should not be advanced to HEAD.\n 1176→\t\tif !state.Phase.IsActive() {\n 1177→\t\t\tcontinue\n 1178→\t\t}\n 1179→\t\tif state.BaseCommit != newHead {\n 1180→\t\t\tlogging.Debug(logCtx, \"post-commit (no trailer): updating BaseCommit\",\n 1181→\t\t\t\tslog.String(\"session_id\", state.SessionID),\n 1182→\t\t\t\tslog.String(\"old_base\", truncateHash(state.BaseCommit)),\n 1183→\t\t\t\tslog.String(\"new_head\", truncateHash(newHead)),\n 1184→\t\t\t)\n 1185→\t\t\tstate.BaseCommit = newHead\n 1186→\t\t\tif err := s.saveSessionState(ctx, state); err != nil {\n 1187→\t\t\t\tlogging.Warn(logCtx, \"failed to update session state\",\n 1188→\t\t\t\t\tslog.String(\"session_id\", state.SessionID),\n 1189→\t\t\t\t\tslog.String(\"error\", err.Error()))\n 1190→\t\t\t}\n 1191→\t\t}\n 1192→\t}\n 1193→}\n 1194→\n 1195→// truncateHash safely truncates a git hash to 7 chars for logging.\n 1196→func truncateHash(h string) string {\n 1197→\tif len(h) \u003e 7 {\n 1198→\t\treturn h[:7]\n 1199→\t}\n 1200→\treturn h\n 1201→}\n 1202→","status":"success","file":{"filePath":"/repo/cli/cmd/entire/cli/strategy/manual_commit_hooks.go","numLines":50}},"type":"tool_use"}]} {"v":1,"agent":"claude-code","cli_version":"0.5.1","type":"assistant","ts":"2026-03-27T08:48:01.142Z","id":"msg_01M9ZaPsKTK9YfUSoqkcF9DK","input_tokens":1,"output_tokens":56,"content":[{"id":"toolu_014aqvpSfcqf6khbrWXitkYx","input":{"file_path":"/repo/cli/cmd/entire/cli/integration_test/attribution_test.go"},"name":"Read","result":{"output":" 1→//go:build integration\n 2→\n 3→package integration\n 4→\n 5→import (\n 6→\t\"encoding/json\"\n 7→\t\"testing\"\n 8→\n 9→\t\"github.com/entireio/cli/cmd/entire/cli/checkpoint\"\n 10→\t\"github.com/entireio/cli/cmd/entire/cli/checkpoint/id\"\n 11→\t\"github.com/entireio/cli/cmd/entire/cli/paths\"\n 12→\t\"github.com/entireio/cli/cmd/entire/cli/trailers\"\n 13→\t\"github.com/go-git/go-git/v6\"\n 14→\t\"github.com/go-git/go-git/v6/plumbing\"\n 15→)\n 16→\n 17→// TestManualCommit_Attribution tests the full attribution calculation flow:\n 18→// 1. Agent creates checkpoint 1\n 19→// 2. User makes changes between checkpoints\n 20→// 3. User enters new prompt (attribution calculated at prompt start)\n 21→// 4. Agent creates checkpoint 2\n 22→// 5. User commits (condensation happens with attribution)\n 23→// 6. Verify attribution metadata is correct\n 24→func TestManualCommit_Attribution(t *testing.T) {\n 25→\tt.Parallel()\n 26→\tenv := NewTestEnv(t)\n 27→\tdefer env.Cleanup()\n 28→\n 29→\tenv.InitRepo()\n 30→\n 31→\t// Create initial commit\n 32→\tenv.WriteFile(\"main.go\", \"package main\\n\")\n 33→\tenv.GitAdd(\"main.go\")\n 34→\tenv.GitCommit(\"Initial commit\")\n 35→\n 36→\tenv.InitEntire()\n 37→\n 38→\tinitialHead := env.GetHeadHash()\n 39→\tt.Logf(\"Initial HEAD: %s\", initialHead[:7])\n 40→\n 41→\t// ========================================\n 42→\t// CHECKPOINT 1: Agent adds function\n 43→\t// ========================================\n 44→\tt.Log(\"Creating checkpoint 1 (agent adds function)\")\n 45→\n 46→\tsession := env.NewSession()\n 47→\tif err := env.SimulateUserPromptSubmit(session.ID); err != nil {\n 48→\t\tt.Fatalf(\"SimulateUserPromptSubmit (prompt 1) failed: %v\", err)\n 49→\t}\n 50→\n 51→\t// Agent adds 4 lines\n 52→\tcheckpoint1Content := \"package main\\n\\nfunc agentFunc() {\\n\\treturn 42\\n}\\n\"\n 53→\tenv.WriteFile(\"main.go\", checkpoint1Content)\n 54→\n 55→\tsession.CreateTranscript(\n 56→\t\t\"Add agent function\",\n 57→\t\t[]FileChange{{Path: \"main.go\", Content: checkpoint1Content}},\n 58→\t)\n 59→\tif err := env.SimulateStop(session.ID, session.TranscriptPath); err != nil {\n 60→\t\tt.Fatalf(\"SimulateStop (checkpoint 1) failed: %v\", err)\n 61→\t}\n 62→\n 63→\t// ========================================\n 64→\t// USER EDITS between checkpoints\n 65→\t// ========================================\n 66→\tt.Log(\"User makes edits between checkpoints\")\n 67→\n 68→\t// User adds 5 comment lines\n 69→\tuserContent := checkpoint1Content +\n 70→\t\t\"// User comment 1\\n\" +\n 71→\t\t\"// User comment 2\\n\" +\n 72→\t\t\"// User comment 3\\n\" +\n 73→\t\t\"// User comment 4\\n\" +\n 74→\t\t\"// User comment 5\\n\"\n 75→\tenv.WriteFile(\"main.go\", userContent)\n 76→\n 77→\t// ========================================\n 78→\t// CHECKPOINT 2: New prompt (attribution calculated)\n 79→\t// ========================================\n 80→\tt.Log(\"User enters new prompt (attribution should capture 5 user lines)\")\n 81→\n 82→\t// Simulate UserPromptSubmit hook - this calculates attribution at prompt start\n 83→\tif err := env.SimulateUserPromptSubmit(session.ID); err != nil {\n 84→\t\tt.Fatalf(\"SimulateUserPromptSubmit (prompt 2) failed: %v\", err)\n 85→\t}\n 86→\n 87→\t// Agent adds another function (4 more lines)\n 88→\tcheckpoint2Content := userContent + \"\\nfunc agentFunc2() {\\n\\treturn 100\\n}\\n\"\n 89→\tenv.WriteFile(\"main.go\", checkpoint2Content)\n 90→\n 91→\tsession.CreateTranscript(\n 92→\t\t\"Add second agent function\",\n 93→\t\t[]FileChange{{Path: \"main.go\", Content: checkpoint2Content}},\n 94→\t)\n 95→\tif err := env.SimulateStop(session.ID, session.TranscriptPath); err != nil {\n 96→\t\tt.Fatalf(\"SimulateStop (checkpoint 2) failed: %v\", err)\n 97→\t}\n 98→\n 99→\t// Verify 2 rewind points\n 100→\tpoints := env.GetRewindPoints()\n 101→\tif len(points) != 2 {\n 102→\t\tt.Fatalf(\"Expected 2 rewind points, got %d\", len(points))\n 103→\t}\n 104→\n 105→\t// ========================================\n 106→\t// USER COMMITS: Condensation happens\n 107→\t// ========================================\n 108→\tt.Log(\"User commits (condensation should happen)\")\n 109→\n 110→\t// Commit using hooks (this triggers condensation)\n 111→\tenv.GitCommitWithShadowHooks(\"Add functions\", \"main.go\")\n 112→\n 113→\t// Get commit hash and checkpoint ID\n 114→\theadHash := env.GetHeadHash()\n 115→\tt.Logf(\"User commit: %s\", headHash[:7])\n 116→\n 117→\trepo, err := git.PlainOpen(env.RepoDir)\n 118→\tif err != nil {\n 119→\t\tt.Fatalf(\"failed to open repo: %v\", err)\n 120→\t}\n 121→\n 122→\tcommitObj, err := repo.CommitObject(plumbing.NewHash(headHash))\n 123→\tif err != nil {\n 124→\t\tt.Fatalf(\"failed to get commit object: %v\", err)\n 125→\t}\n 126→\n 127→\tcheckpointID, found := trailers.ParseCheckpoint(commitObj.Message)\n 128→\tif !found {\n 129→\t\tt.Fatal(\"Commit should have Entire-Checkpoint trailer\")\n 130→\t}\n 131→\tt.Logf(\"Checkpoint ID: %s\", checkpointID)\n 132→\n 133→\t// ========================================\n 134→\t// VERIFY ATTRIBUTION\n 135→\t// ========================================\n 136→\tt.Log(\"Verifying attribution in metadata\")\n 137→\n 138→\t// Read metadata from entire/checkpoints/v1 branch\n 139→\tsessionsRef, err := repo.Reference(plumbing.NewBranchReferenceName(paths.MetadataBranchName), true)\n 140→\tif err != nil {\n 141→\t\tt.Fatalf(\"Failed to get entire/checkpoints/v1 branch: %v\", err)\n 142→\t}\n 143→\n 144→\tsessionsCommit, err := repo.CommitObject(sessionsRef.Hash())\n 145→\tif err != nil {\n 146→\t\tt.Fatalf(\"Failed to get sessions commit: %v\", err)\n 147→\t}\n 148→\n 149→\tsessionsTree, err := sessionsCommit.Tree()\n 150→\tif err != nil {\n 151→\t\tt.Fatalf(\"Failed to get sessions tree: %v\", err)\n 152→\t}\n 153→\n 154→\t// Read session-level metadata.json from sharded path (InitialAttribution is in 0/metadata.json)\n 155→\tmetadataPath := SessionMetadataPath(checkpointID.String())\n 156→\tmetadataFile, err := sessionsTree.File(metadataPath)\n 157→\tif err != nil {\n 158→\t\tt.Fatalf(\"Failed to read session metadata.json at path %s: %v\", metadataPath, err)\n 159→\t}\n 160→\n 161→\tmetadataContent, err := metadataFile.Contents()\n 162→\tif err != nil {\n 163→\t\tt.Fatalf(\"Failed to read metadata content: %v\", err)\n 164→\t}\n 165→\n 166→\tvar metadata checkpoint.CommittedMetadata\n 167→\tif err := json.Unmarshal([]byte(metadataContent), \u0026metadata); err != nil {\n 168→\t\tt.Fatalf(\"Failed to parse metadata.json: %v\", err)\n 169→\t}\n 170→\n 171→\t// Verify InitialAttribution exists\n 172→\tif metadata.InitialAttribution == nil {\n 173→\t\tt.Fatal(\"InitialAttribution is nil\")\n 174→\t}\n 175→\n 176→\tattr := metadata.InitialAttribution\n 177→\tt.Logf(\"Attribution: agent=%d, human_added=%d, human_modified=%d, human_removed=%d, total=%d, percentage=%.1f%%\",\n 178→\t\tattr.AgentLines, attr.HumanAdded, attr.HumanModified, attr.HumanRemoved,\n 179→\t\tattr.TotalCommitted, attr.AgentPercentage)\n 180→\n 181→\t// Verify attribution was calculated and has reasonable values\n 182→\t// Note: The shadow branch includes all worktree changes (agent + user),\n 183→\t// so base→shadow diff includes user edits that were present during SaveStep.\n 184→\t// The attribution separates them using PromptAttributions.\n 185→\t//\n 186→\t// Expected: agent=13 (base→shadow includes user comments in worktree)\n 187→\t// human=5 (from PromptAttribution)\n 188→\t// total=18 (net additions)\n 189→\t//\n 190→\t// This tests that:\n 191→\t// 1. Attribution is calculated and stored\n 192→\t// 2. PromptAttribution captured user edits between checkpoints\n 193→\t// 3. Percentages are computed\n 194→\tif attr.AgentLines \u003c= 0 {\n 195→\t\tt.Errorf(\"AgentLines = %d, should be \u003e 0\", attr.AgentLines)\n 196→\t}\n 197→\n 198→\tif attr.HumanAdded != 5 {\n 199→\t\tt.Errorf(\"HumanAdded = %d, want 5 (5 comments captured in PromptAttribution)\",\n 200→\t\t\tattr.HumanAdded)\n 201→\t}\n 202→\n 203→\tif attr.TotalCommitted \u003c= 0 {\n 204→\t\tt.Errorf(\"TotalCommitted = %d, should be \u003e 0\", attr.TotalCommitted)\n 205→\t}\n 206→\n 207→\tif attr.AgentPercentage \u003c= 0 || attr.AgentPercentage \u003e= 100 {\n 208→\t\tt.Errorf(\"AgentPercentage = %.1f%%, should be between 0 and 100\",\n 209→\t\t\tattr.AgentPercentage)\n 210→\t}\n 211→}\n 212→\n 213→// TestManualCommit_AttributionDeletionOnly tests attribution for deletion-only commits\n 214→func TestManualCommit_AttributionDeletionOnly(t *testing.T) {\n 215→\tt.Parallel()\n 216→\tenv := NewTestEnv(t)\n 217→\tdefer env.Cleanup()\n 218→\n 219→\tenv.InitRepo()\n 220→\n 221→\t// Create initial commit with content\n 222→\tinitialContent := \"package main\\n\\nfunc oldFunc1() {}\\nfunc oldFunc2() {}\\nfunc oldFunc3() {}\\n\"\n 223→\tenv.WriteFile(\"main.go\", initialContent)\n 224→\tenv.GitAdd(\"main.go\")\n 225→\tenv.GitCommit(\"Initial commit\")\n 226→\n 227→\tenv.InitEntire()\n 228→\n 229→\t// ========================================\n 230→\t// CHECKPOINT 1: Agent REMOVES a function (deletion, no additions)\n 231→\t// ========================================\n 232→\tsession := env.NewSession()\n 233→\tif err := env.SimulateUserPromptSubmit(session.ID); err != nil {\n 234→\t\tt.Fatalf(\"SimulateUserPromptSubmit failed: %v\", err)\n 235→\t}\n 236→\n 237→\t// Agent removes one function (keeps 2 functions)\n 238→\tcheckpointContent := \"package main\\n\\nfunc oldFunc2() {}\\nfunc oldFunc3() {}\\n\"\n 239→\tenv.WriteFile(\"main.go\", checkpointContent)\n 240→\n 241→\tsession.CreateTranscript(\n 242→\t\t\"Remove oldFunc1\",\n 243→\t\t[]FileChange{{Path: \"main.go\", Content: checkpointContent}},\n 244→\t)\n 245→\tif err := env.SimulateStop(session.ID, session.TranscriptPath); err != nil {\n 246→\t\tt.Fatalf(\"SimulateStop failed: %v\", err)\n 247→\t}\n 248→\n 249→\t// ========================================\n 250→\t// USER DELETES REMAINING FUNCTIONS\n 251→\t// ========================================\n 252→\tt.Log(\"User deletes remaining functions (deletion-only commit)\")\n 253→\n 254→\t// Remove remaining functions, keep only package declaration\n 255→\tenv.WriteFile(\"main.go\", \"package main\\n\")\n 256→\n 257→\t// Commit using hooks\n 258→\tenv.GitCommitWithShadowHooks(\"Remove remaining functions\", \"main.go\")\n 259→\n 260→\t// Get checkpoint ID\n 261→\theadHash := env.GetHeadHash()\n 262→\trepo, err := git.PlainOpen(env.RepoDir)\n 263→\tif err != nil {\n 264→\t\tt.Fatalf(\"failed to open repo: %v\", err)\n 265→\t}\n 266→\n 267→\tcommitObj, err := repo.CommitObject(plumbing.NewHash(headHash))\n 268→\tif err != nil {\n 269→\t\tt.Fatalf(\"failed to get commit object: %v\", err)\n 270→\t}\n 271→\n 272→\tcheckpointID, found := trailers.ParseCheckpoint(commitObj.Message)\n 273→\tif !found {\n 274→\t\tt.Fatal(\"Commit should have Entire-Checkpoint trailer\")\n 275→\t}\n 276→\n 277→\t// ========================================\n 278→\t// VERIFY ATTRIBUTION FOR DELETION-ONLY COMMIT\n 279→\t// ========================================\n 280→\tt.Log(\"Verifying attribution for deletion-only commit\")\n 281→\n 282→\tsessionsRef, err := repo.Reference(plumbing.NewBranchReferenceName(paths.MetadataBranchName), true)\n 283→\tif err != nil {\n 284→\t\tt.Fatalf(\"Failed to get entire/checkpoints/v1 branch: %v\", err)\n 285→\t}\n 286→\n 287→\tsessionsCommit, err := repo.CommitObject(sessionsRef.Hash())\n 288→\tif err != nil {\n 289→\t\tt.Fatalf(\"Failed to get sessions commit: %v\", err)\n 290→\t}\n 291→\n 292→\tsessionsTree, err := sessionsCommit.Tree()\n 293→\tif err != nil {\n 294→\t\tt.Fatalf(\"Failed to get sessions tree: %v\", err)\n 295→\t}\n 296→\n 297→\t// Read session-level metadata.json (InitialAttribution is in 0/metadata.json)\n 298→\tmetadataPath := SessionMetadataPath(checkpointID.String())\n 299→\tmetadataFile, err := sessionsTree.File(metadataPath)\n 300→\tif err != nil {\n 301→\t\tt.Fatalf(\"Failed to read session metadata.json at path %s: %v\", metadataPath, err)\n 302→\t}\n 303→\n 304→\tmetadataContent, err := metadataFile.Contents()\n 305→\tif err != nil {\n 306→\t\tt.Fatalf(\"Failed to read metadata content: %v\", err)\n 307→\t}\n 308→\n 309→\tvar metadata checkpoint.CommittedMetadata\n 310→\tif err := json.Unmarshal([]byte(metadataContent), \u0026metadata); err != nil {\n 311→\t\tt.Fatalf(\"Failed to parse metadata.json: %v\", err)\n 312→\t}\n 313→\n 314→\tif metadata.InitialAttribution == nil {\n 315→\t\tt.Fatal(\"InitialAttribution is nil\")\n 316→\t}\n 317→\n 318→\tattr := metadata.InitialAttribution\n 319→\tt.Logf(\"Attribution (deletion-only): agent=%d, human_added=%d, human_removed=%d, total=%d, percentage=%.1f%%\",\n 320→\t\tattr.AgentLines, attr.HumanAdded, attr.HumanRemoved,\n 321→\t\tattr.TotalCommitted, attr.AgentPercentage)\n 322→\n 323→\t// For deletion-only commits where agent makes no additions:\n 324→\t// - Agent removed oldFunc1 (made deletions, not additions)\n 325→\t// - AgentLines = 0 (no additions)\n 326→\t// - User removed oldFunc2 and oldFunc3\n 327→\t// - HumanAdded = 0 (no new lines)\n 328→\t// - HumanRemoved = number of lines user deleted\n 329→\t// - TotalCommitted = 0 (no additions from anyone)\n 330→\t// - AgentPercentage = 0 (by convention for deletion-only)\n 331→\n 332→\tif attr.AgentLines != 0 {\n 333→\t\tt.Errorf(\"AgentLines = %d, want 0 (agent made no additions, only deletions)\", attr.AgentLines)\n 334→\t}\n 335→\n 336→\tif attr.HumanAdded != 0 {\n 337→\t\tt.Errorf(\"HumanAdded = %d, want 0 (no new lines in deletion-only commit)\", attr.HumanAdded)\n 338→\t}\n 339→\n 340→\t// User removed 2 remaining functions + 1 blank line (3 lines total)\n 341→\tif attr.HumanRemoved != 3 {\n 342→\t\tt.Errorf(\"HumanRemoved = %d, want 3 (removed blank + 2 functions = 3 lines)\", attr.HumanRemoved)\n 343→\t}\n 344→\n 345→\tif attr.TotalCommitted != 0 {\n 346→\t\tt.Errorf(\"TotalCommitted = %d, want 0 (deletion-only commit has no net additions)\", attr.TotalCommitted)\n 347→\t}\n 348→\n 349→\tif attr.AgentPercentage != 0 {\n 350→\t\tt.Errorf(\"AgentPercentage = %.1f%%, want 0 (deletion-only commit)\",\n 351→\t\t\tattr.AgentPercentage)\n 352→\t}\n 353→}\n 354→\n 355→// TestManualCommit_AttributionNoDoubleCount tests that PromptAttributions are\n 356→// cleared after condensation to prevent double-counting on subsequent commits.\n 357→//\n 358→// Bug scenario:\n 359→// 1. Checkpoint 1 → user edits → commit (condensation, PromptAttributions used)\n 360→// 2. StepCount reset to 0, but PromptAttributions NOT cleared\n 361→// 3. Checkpoint 2 → new PromptAttributions appended to old ones\n 362→// 4. Second commit → CalculateAttributionWithAccumulated sums ALL PromptAttributions\n 363→// 5. User edits from first commit are double-counted\n 364→func TestManualCommit_AttributionNoDoubleCount(t *testing.T) {\n 365→\tt.Parallel()\n 366→\tenv := NewTestEnv(t)\n 367→\tdefer env.Cleanup()\n 368→\n 369→\tenv.InitRepo()\n 370→\n 371→\t// Create initial commit\n 372→\tenv.WriteFile(\"main.go\", \"package main\\n\")\n 373→\tenv.GitAdd(\"main.go\")\n 374→\tenv.GitCommit(\"Initial commit\")\n 375→\n 376→\tenv.InitEntire()\n 377→\n 378→\t// ========================================\n 379→\t// FIRST CYCLE: Checkpoint → user edit → commit\n 380→\t// ========================================\n 381→\tt.Log(\"First cycle: agent checkpoint + user edit + commit\")\n 382→\n 383→\tsession := env.NewSession()\n 384→\tif err := env.SimulateUserPromptSubmit(session.ID); err != nil {\n 385→\t\tt.Fatalf(\"SimulateUserPromptSubmit (first cycle) failed: %v\", err)\n 386→\t}\n 387→\n 388→\t// Agent adds 5 lines\n 389→\tcheckpoint1Content := \"package main\\n\\nfunc agent1() { return 1 }\\nfunc agent2() { return 2 }\\nfunc agent3() { return 3 }\\n\"\n 390→\tenv.WriteFile(\"main.go\", checkpoint1Content)\n 391→\n 392→\tsession.CreateTranscript(\n 393→\t\t\"Add agent functions\",\n 394→\t\t[]FileChange{{Path: \"main.go\", Content: checkpoint1Content}},\n 395→\t)\n 396→\tif err := env.SimulateStop(session.ID, session.TranscriptPath); err != nil {\n 397→\t\tt.Fatalf(\"SimulateStop (first cycle) failed: %v\", err)\n 398→\t}\n 399→\n 400→\t// User adds 2 lines between checkpoints\n 401→\tuserEdit1Content := checkpoint1Content + \"// User comment 1\\n// User comment 2\\n\"\n 402→\tenv.WriteFile(\"main.go\", userEdit1Content)\n 403→\n 404→\t// Commit with hooks (condensation happens)\n 405→\tenv.GitCommitWithShadowHooks(\"First commit\", \"main.go\")\n 406→\n 407→\t// Get first commit's checkpoint ID\n 408→\trepo, err := git.PlainOpen(env.RepoDir)\n 409→\tif err != nil {\n 410→\t\tt.Fatalf(\"failed to open repo: %v\", err)\n 411→\t}\n 412→\n 413→\thead, err := repo.Head()\n 414→\tif err != nil {\n 415→\t\tt.Fatalf(\"failed to get HEAD: %v\", err)\n 416→\t}\n 417→\n 418→\tcommit1, err := repo.CommitObject(head.Hash())\n 419→\tif err != nil {\n 420→\t\tt.Fatalf(\"failed to get commit: %v\", err)\n 421→\t}\n 422→\n 423→\tcheckpointID1, found := trailers.ParseCheckpoint(commit1.Message)\n 424→\tif !found {\n 425→\t\tt.Fatal(\"First commit should have checkpoint trailer\")\n 426→\t}\n 427→\n 428→\tt.Logf(\"First commit checkpoint ID: %s\", checkpointID1)\n 429→\n 430→\t// Verify first commit attribution\n 431→\tattr1 := getAttributionFromMetadata(t, repo, checkpointID1)\n 432→\tt.Logf(\"First commit attribution: agent=%d, human_added=%d, total=%d\",\n 433→\t\tattr1.AgentLines, attr1.HumanAdded, attr1.TotalCommitted)\n 434→\n 435→\t// First commit should have:\n 436→\t// - Agent: 4 lines (3 functions + 1 blank)\n 437→\t// - User: 2 lines (2 comments)\n 438→\t// - Total: 6 lines\n 439→\tif attr1.HumanAdded != 2 {\n 440→\t\tt.Errorf(\"First commit HumanAdded = %d, want 2\", attr1.HumanAdded)\n 441→\t}\n 442→\n 443→\t// ========================================\n 444→\t// SECOND CYCLE: New checkpoint → user edit → commit\n 445→\t// ========================================\n 446→\tt.Log(\"Second cycle: new agent checkpoint + user edit + commit\")\n 447→\n 448→\t// Simulate new prompt (should calculate attribution, which should be empty after reset)\n 449→\tif err := env.SimulateUserPromptSubmit(session.ID); err != nil {\n 450→\t\tt.Fatalf(\"SimulateUserPromptSubmit (second cycle) failed: %v\", err)\n 451→\t}\n 452→\n 453→\t// Agent adds 3 more lines\n 454→\tcheckpoint2Content := userEdit1Content + \"\\nfunc agent4() { return 4 }\\nfunc agent5() { return 5 }\\n\"\n 455→\tenv.WriteFile(\"main.go\", checkpoint2Content)\n 456→\n 457→\tsession.CreateTranscript(\n 458→\t\t\"Add more agent functions\",\n 459→\t\t[]FileChange{{Path: \"main.go\", Content: checkpoint2Content}},\n 460→\t)\n 461→\tif err := env.SimulateStop(session.ID, session.TranscriptPath); err != nil {\n 462→\t\tt.Fatalf(\"SimulateStop (second cycle) failed: %v\", err)\n 463→\t}\n 464→\n 465→\t// User adds 1 more line\n 466→\tuserEdit2Content := checkpoint2Content + \"// User comment 3\\n\"\n 467→\tenv.WriteFile(\"main.go\", userEdit2Content)\n 468→\n 469→\t// Second commit (another condensation)\n 470→\tenv.GitCommitWithShadowHooks(\"Second commit\", \"main.go\")\n 471→\n 472→\t// Get second commit's checkpoint ID\n 473→\thead, err = repo.Head()\n 474→\tif err != nil {\n 475→\t\tt.Fatalf(\"failed to get HEAD after second commit: %v\", err)\n 476→\t}\n 477→\n 478→\tcommit2, err := repo.CommitObject(head.Hash())\n 479→\tif err != nil {\n 480→\t\tt.Fatalf(\"failed to get second commit: %v\", err)\n 481→\t}\n 482→\n 483→\tcheckpointID2, found := trailers.ParseCheckpoint(commit2.Message)\n 484→\tif !found {\n 485→\t\tt.Fatal(\"Second commit should have checkpoint trailer\")\n 486→\t}\n 487→\n 488→\tt.Logf(\"Second commit checkpoint ID: %s\", checkpointID2)\n 489→\n 490→\t// Verify second commit attribution\n 491→\tattr2 := getAttributionFromMetadata(t, repo, checkpointID2)\n 492→\tt.Logf(\"Second commit attribution: agent=%d, human_added=%d, total=%d\",\n 493→\t\tattr2.AgentLines, attr2.HumanAdded, attr2.TotalCommitted)\n 494→\n 495→\t// Second commit should have (since first commit):\n 496→\t// - Agent: 3 lines (2 functions + 1 blank)\n 497→\t// - User: 1 line (1 comment)\n 498→\t// - Total: 4 lines\n 499→\t//\n 500→\t// BUG (if not fixed): HumanAdded would be 3 (1 new + 2 from first commit double-counted)\n 501→\t// CORRECT (after fix): HumanAdded should be 1 (only new user edits)\n 502→\n 503→\tif attr2.HumanAdded != 1 {\n 504→\t\tt.Errorf(\"Second commit HumanAdded = %d, want 1 (should NOT double-count first commit's 2 user lines)\",\n 505→\t\t\tattr2.HumanAdded)\n 506→\t}\n 507→\n 508→\tif attr2.TotalCommitted != 4 {\n 509→\t\tt.Errorf(\"Second commit TotalCommitted = %d, want 4 (3 agent + 1 user)\",\n 510→\t\t\tattr2.TotalCommitted)\n 511→\t}\n 512→\n 513→\t// Agent percentage should be 3/4 = 75%\n 514→\tif attr2.AgentPercentage \u003c 74.9 || attr2.AgentPercentage \u003e 75.1 {\n 515→\t\tt.Errorf(\"Second commit AgentPercentage = %.1f%%, want 75.0%%\", attr2.AgentPercentage)\n 516→\t}\n 517→}\n 518→\n 519→// getAttributionFromMetadata reads attribution from a checkpoint on entire/checkpoints/v1 branch.\n 520→// InitialAttribution is stored in session-level metadata (0/metadata.json).\n 521→func getAttributionFromMetadata(t *testing.T, repo *git.Repository, checkpointID id.CheckpointID) *checkpoint.InitialAttribution {\n 522→\tt.Helper()\n 523→\n 524→\tsessionsRef, err := repo.Reference(plumbing.NewBranchReferenceName(paths.MetadataBranchName), true)\n 525→\tif err != nil {\n 526→\t\tt.Fatalf(\"Failed to get entire/checkpoints/v1 branch: %v\", err)\n 527→\t}\n 528→\n 529→\tsessionsCommit, err := repo.CommitObject(sessionsRef.Hash())\n 530→\tif err != nil {\n 531→\t\tt.Fatalf(\"Failed to get sessions commit: %v\", err)\n 532→\t}\n 533→\n 534→\tsessionsTree, err := sessionsCommit.Tree()\n 535→\tif err != nil {\n 536→\t\tt.Fatalf(\"Failed to get sessions tree: %v\", err)\n 537→\t}\n 538→\n 539→\t// Read session-level metadata (InitialAttribution is in 0/metadata.json)\n 540→\tmetadataPath := SessionMetadataPath(checkpointID.String())\n 541→\tmetadataFile, err := sessionsTree.File(metadataPath)\n 542→\tif err != nil {\n 543→\t\tt.Fatalf(\"Failed to read session metadata.json at path %s: %v\", metadataPath, err)\n 544→\t}\n 545→\n 546→\tmetadataContent, err := metadataFile.Contents()\n 547→\tif err != nil {\n 548→\t\tt.Fatalf(\"Failed to read metadata content: %v\", err)\n 549→\t}\n 550→\n 551→\tvar metadata checkpoint.CommittedMetadata\n 552→\tif err := json.Unmarshal([]byte(metadataContent), \u0026metadata); err != nil {\n 553→\t\tt.Fatalf(\"Failed to parse metadata.json: %v\", err)\n 554→\t}\n 555→\n 556→\tif metadata.InitialAttribution == nil {\n 557→\t\tt.Fatal(\"InitialAttribution is nil\")\n 558→\t}\n 559→\n 560→\treturn metadata.InitialAttribution\n 561→}\n 562→","status":"success","file":{"filePath":"/repo/cli/cmd/entire/cli/integration_test/attribution_test.go","numLines":562}},"type":"tool_use"}]} {"v":1,"agent":"claude-code","cli_version":"0.5.1","type":"assistant","ts":"2026-03-27T08:51:11.929Z","id":"msg_01RfUVJGppsaVqSf7opSiRKs","input_tokens":1,"output_tokens":6,"content":[{"text":"Now let me look at how `GitCommitWithShadowHooks` works and how to make a plain commit (no trailer) between two agent cycles.","type":"text"},{"id":"toolu_01MvLJoQRg9npL1NtcpgXAcN","input":{"pattern":"func.*GitCommitWithShadowHooks","path":"/repo/cli/cmd/entire/cli/integration_test","output_mode":"content","-n":true},"name":"Grep","result":{"output":"cmd/entire/cli/integration_test/testenv.go:936:func (env *TestEnv) GitCommitWithShadowHooks(message string, files ...string) {\ncmd/entire/cli/integration_test/testenv.go:944:func (env *TestEnv) GitCommitWithShadowHooksAsAgent(message string, files ...string) {","status":"success"},"type":"tool_use"}]} {"v":1,"agent":"claude-code","cli_version":"0.5.1","type":"assistant","ts":"2026-03-27T08:51:12.927Z","id":"msg_01RfUVJGppsaVqSf7opSiRKs","input_tokens":1,"output_tokens":302,"content":[{"id":"toolu_01CjwGzx4QaJjCsigbpFGuQN","input":{"pattern":"func.*GitCommitRaw|func.*GitCommit[^W]","path":"/repo/cli/cmd/entire/cli/integration_test","output_mode":"content","-n":true},"name":"Grep","result":{"output":"cmd/entire/cli/integration_test/testenv.go:363:func (env *TestEnv) GitCommit(message string) {\ncmd/entire/cli/integration_test/testenv.go:1025:func (env *TestEnv) GitCommitAmendWithShadowHooks(message string, files ...string) {\ncmd/entire/cli/integration_test/testenv.go:1182:func (env *TestEnv) GitCommitStagedWithShadowHooks(message string) {","status":"success"},"type":"tool_use"}]} {"v":1,"agent":"claude-code","cli_version":"0.5.1","type":"assistant","ts":"2026-03-27T08:51:17.360Z","id":"msg_01V26cf6AgLYeo6DV8aa5tS9","input_tokens":1,"output_tokens":115,"content":[{"id":"toolu_01LieFfyyhFCfXVrQLsQ8fju","input":{"file_path":"/repo/cli/cmd/entire/cli/integration_test/testenv.go","offset":936,"limit":90},"name":"Read","result":{"output":" 936→func (env *TestEnv) GitCommitWithShadowHooks(message string, files ...string) {\n 937→\tenv.T.Helper()\n 938→\tenv.gitCommitWithShadowHooks(message, true, files...)\n 939→}\n 940→\n 941→// GitCommitWithShadowHooksAsAgent is like GitCommitWithShadowHooks but simulates\n 942→// an agent commit (no TTY). This triggers the fast path in PrepareCommitMsg that\n 943→// skips content detection and interactive prompts for ACTIVE sessions.\n 944→func (env *TestEnv) GitCommitWithShadowHooksAsAgent(message string, files ...string) {\n 945→\tenv.T.Helper()\n 946→\tenv.gitCommitWithShadowHooks(message, false, files...)\n 947→}\n 948→\n 949→// gitCommitWithShadowHooks is the shared implementation for committing with shadow hooks.\n 950→// When simulateTTY is true, sets ENTIRE_TEST_TTY=1 to simulate a human at the terminal.\n 951→// When false, filters it out to simulate an agent subprocess (no controlling terminal).\n 952→func (env *TestEnv) gitCommitWithShadowHooks(message string, simulateTTY bool, files ...string) {\n 953→\tenv.T.Helper()\n 954→\n 955→\t// Stage files using go-git\n 956→\tfor _, file := range files {\n 957→\t\tenv.GitAdd(file)\n 958→\t}\n 959→\n 960→\t// Create a temp file for the commit message (prepare-commit-msg hook modifies this)\n 961→\tmsgFile := filepath.Join(env.RepoDir, \".git\", \"COMMIT_EDITMSG\")\n 962→\tif err := os.WriteFile(msgFile, []byte(message), 0o644); err != nil {\n 963→\t\tenv.T.Fatalf(\"failed to write commit message file: %v\", err)\n 964→\t}\n 965→\n 966→\t// Run prepare-commit-msg hook using the shared binary.\n 967→\t// Pass source=\"message\" to match real `git commit -m` behavior.\n 968→\tprepCmd := exec.Command(getTestBinary(), \"hooks\", \"git\", \"prepare-commit-msg\", msgFile, \"message\")\n 969→\tprepCmd.Dir = env.RepoDir\n 970→\tif simulateTTY {\n 971→\t\t// Simulate human at terminal: ENTIRE_TEST_TTY=1 makes hasTTY() return true\n 972→\t\t// and askConfirmTTY() return defaultYes without reading from /dev/tty.\n 973→\t\tprepCmd.Env = append(testutil.GitIsolatedEnv(), \"ENTIRE_TEST_TTY=1\")\n 974→\t} else {\n 975→\t\t// Simulate agent: ENTIRE_TEST_TTY=0 makes hasTTY() return false,\n 976→\t\t// triggering the fast path that adds trailers for ACTIVE sessions.\n 977→\t\tprepCmd.Env = append(testutil.GitIsolatedEnv(), \"ENTIRE_TEST_TTY=0\")\n 978→\t}\n 979→\tif output, err := prepCmd.CombinedOutput(); err != nil {\n 980→\t\tenv.T.Logf(\"prepare-commit-msg output: %s\", output)\n 981→\t\t// Don't fail - hook may silently succeed\n 982→\t}\n 983→\n 984→\t// Read the modified message\n 985→\tmodifiedMsg, err := os.ReadFile(msgFile)\n 986→\tif err != nil {\n 987→\t\tenv.T.Fatalf(\"failed to read modified commit message: %v\", err)\n 988→\t}\n 989→\n 990→\t// Create the commit using go-git with the modified message\n 991→\trepo, err := git.PlainOpen(env.RepoDir)\n 992→\tif err != nil {\n 993→\t\tenv.T.Fatalf(\"failed to open git repo: %v\", err)\n 994→\t}\n 995→\n 996→\tworktree, err := repo.Worktree()\n 997→\tif err != nil {\n 998→\t\tenv.T.Fatalf(\"failed to get worktree: %v\", err)\n 999→\t}\n 1000→\n 1001→\t_, err = worktree.Commit(string(modifiedMsg), \u0026git.CommitOptions{\n 1002→\t\tAuthor: \u0026object.Signature{\n 1003→\t\t\tName: \"Test User\",\n 1004→\t\t\tEmail: \"test@example.com\",\n 1005→\t\t\tWhen: time.Now(),\n 1006→\t\t},\n 1007→\t})\n 1008→\tif err != nil {\n 1009→\t\tenv.T.Fatalf(\"failed to commit: %v\", err)\n 1010→\t}\n 1011→\n 1012→\t// Run post-commit hook using the shared binary\n 1013→\t// This triggers condensation if the commit has an Entire-Checkpoint trailer\n 1014→\tpostCmd := exec.Command(getTestBinary(), \"hooks\", \"git\", \"post-commit\")\n 1015→\tpostCmd.Dir = env.RepoDir\n 1016→\tif output, err := postCmd.CombinedOutput(); err != nil {\n 1017→\t\tenv.T.Logf(\"post-commit output: %s\", output)\n 1018→\t\t// Don't fail - hook may silently succeed\n 1019→\t}\n 1020→}\n 1021→\n 1022→// GitCommitAmendWithShadowHooks amends the last commit with shadow hooks.\n 1023→// This simulates `git commit --amend` with the prepare-commit-msg and post-commit hooks.\n 1024→// The prepare-commit-msg hook is called with \"commit\" source to indicate an amend.\n 1025→func (env *TestEnv) GitCommitAmendWithShadowHooks(message string, files ...string) {","status":"success","file":{"filePath":"/repo/cli/cmd/entire/cli/integration_test/testenv.go","numLines":90}},"type":"tool_use"}]} {"v":1,"agent":"claude-code","cli_version":"0.5.1","type":"assistant","ts":"2026-03-27T08:51:23.563Z","id":"msg_01UkT646YNuG6fmJ5JPNeEjx","input_tokens":1,"output_tokens":2,"content":[{"text":"Now let me also check `GitCommit` (plain commit without hooks).","type":"text"},{"id":"toolu_01MPP1fkVy1rnLDd1igfc5s8","input":{"file_path":"/repo/cli/cmd/entire/cli/integration_test/testenv.go","offset":363,"limit":30},"name":"Read","result":{"output":" 363→func (env *TestEnv) GitCommit(message string) {\n 364→\tenv.T.Helper()\n 365→\n 366→\trepo, err := git.PlainOpen(env.RepoDir)\n 367→\tif err != nil {\n 368→\t\tenv.T.Fatalf(\"failed to open git repo: %v\", err)\n 369→\t}\n 370→\n 371→\tworktree, err := repo.Worktree()\n 372→\tif err != nil {\n 373→\t\tenv.T.Fatalf(\"failed to get worktree: %v\", err)\n 374→\t}\n 375→\n 376→\t_, err = worktree.Commit(message, \u0026git.CommitOptions{\n 377→\t\tAuthor: \u0026object.Signature{\n 378→\t\t\tName: \"Test User\",\n 379→\t\t\tEmail: \"test@example.com\",\n 380→\t\t\tWhen: time.Now(),\n 381→\t\t},\n 382→\t})\n 383→\tif err != nil {\n 384→\t\tenv.T.Fatalf(\"failed to commit: %v\", err)\n 385→\t}\n 386→}\n 387→\n 388→// GitCommitWithMetadata creates a commit with Entire-Metadata trailer.\n 389→// This simulates commits created by the commit strategy.\n 390→func (env *TestEnv) GitCommitWithMetadata(message, metadataDir string) {\n 391→\tenv.T.Helper()\n 392→","status":"success","file":{"filePath":"/repo/cli/cmd/entire/cli/integration_test/testenv.go","numLines":30}},"type":"tool_use"}]} -{"v":1,"agent":"claude-code","cli_version":"0.5.1","type":"assistant","ts":"2026-03-27T08:56:00.296Z","id":"msg_01SczPC8cZpDsUyukXbPXPz4","input_tokens":1,"output_tokens":9748,"content":[{"text":"Now I have everything I need. Let me write the regression test.","type":"text"},{"id":"toolu_01HdC8HtutVKNKbuVpvn8sYr","input":{"file_path":"/repo/cli/cmd/entire/cli/integration_test/attribution_test.go","offset":1,"limit":15},"name":"Read","result":{"output":" 1→//go:build integration\n 2→\n 3→package integration\n 4→\n 5→import (\n 6→\t\"encoding/json\"\n 7→\t\"testing\"\n 8→\n 9→\t\"github.com/entireio/cli/cmd/entire/cli/checkpoint\"\n 10→\t\"github.com/entireio/cli/cmd/entire/cli/checkpoint/id\"\n 11→\t\"github.com/entireio/cli/cmd/entire/cli/paths\"\n 12→\t\"github.com/entireio/cli/cmd/entire/cli/trailers\"\n 13→\t\"github.com/go-git/go-git/v6\"\n 14→\t\"github.com/go-git/go-git/v6/plumbing\"\n 15→)","status":"success","file":{"filePath":"/repo/cli/cmd/entire/cli/integration_test/attribution_test.go","numLines":15}},"type":"tool_use"}]} +{"v":1,"agent":"claude-code","cli_version":"0.5.1","type":"assistant","ts":"2026-03-27T08:56:00.296Z","id":"msg_01SczPC8cZpDsUyukXbPXPz4","input_tokens":1,"output_tokens":9748,"content":[{"thinking":"","type":"thinking"},{"text":"Now I have everything I need. Let me write the regression test.","type":"text"},{"id":"toolu_01HdC8HtutVKNKbuVpvn8sYr","input":{"file_path":"/repo/cli/cmd/entire/cli/integration_test/attribution_test.go","offset":1,"limit":15},"name":"Read","result":{"output":" 1→//go:build integration\n 2→\n 3→package integration\n 4→\n 5→import (\n 6→\t\"encoding/json\"\n 7→\t\"testing\"\n 8→\n 9→\t\"github.com/entireio/cli/cmd/entire/cli/checkpoint\"\n 10→\t\"github.com/entireio/cli/cmd/entire/cli/checkpoint/id\"\n 11→\t\"github.com/entireio/cli/cmd/entire/cli/paths\"\n 12→\t\"github.com/entireio/cli/cmd/entire/cli/trailers\"\n 13→\t\"github.com/go-git/go-git/v6\"\n 14→\t\"github.com/go-git/go-git/v6/plumbing\"\n 15→)","status":"success","file":{"filePath":"/repo/cli/cmd/entire/cli/integration_test/attribution_test.go","numLines":15}},"type":"tool_use"}]} {"v":1,"agent":"claude-code","cli_version":"0.5.1","type":"assistant","ts":"2026-03-27T08:56:04.605Z","id":"msg_018jDCWAGmZdyQhCcZzqZiDa","input_tokens":1,"output_tokens":135,"content":[{"id":"toolu_01GTjHEmUrQ5g1dGFcxFJTpo","input":{"pattern":"func.*SessionMetadataPath","path":"/repo/cli/cmd/entire/cli/integration_test","output_mode":"content","-n":true},"name":"Grep","result":{"output":"cmd/entire/cli/integration_test/testenv.go:1421:func SessionMetadataPath(checkpointID string) string {","status":"success"},"type":"tool_use"}]} {"v":1,"agent":"claude-code","cli_version":"0.5.1","type":"assistant","ts":"2026-03-27T08:56:12.337Z","id":"msg_016t3YCuL2PRhUQiz1xmbCku","input_tokens":1,"output_tokens":116,"content":[{"id":"toolu_01VutGgnbxez3dpMP7CaR8Tz","input":{"file_path":"/repo/cli/cmd/entire/cli/integration_test/testenv.go","offset":1421,"limit":20},"name":"Read","result":{"output":" 1421→func SessionMetadataPath(checkpointID string) string {\n 1422→\treturn SessionFilePath(checkpointID, paths.MetadataFileName)\n 1423→}\n 1424→\n 1425→// CheckpointValidation contains expected values for checkpoint validation.\n 1426→type CheckpointValidation struct {\n 1427→\t// CheckpointID is the expected checkpoint ID\n 1428→\tCheckpointID string\n 1429→\n 1430→\t// SessionID is the expected session ID\n 1431→\tSessionID string\n 1432→\n 1433→\t// Strategy is the expected strategy name\n 1434→\tStrategy string\n 1435→\n 1436→\t// FilesTouched are the expected files in files_touched\n 1437→\tFilesTouched []string\n 1438→\n 1439→\t// ExpectedPrompts are strings that should appear in prompt.txt\n 1440→\tExpectedPrompts []string","status":"success","file":{"filePath":"/repo/cli/cmd/entire/cli/integration_test/testenv.go","numLines":20}},"type":"tool_use"}]} {"v":1,"agent":"claude-code","cli_version":"0.5.1","type":"assistant","ts":"2026-03-27T08:58:37.874Z","id":"msg_019gWeJDMpukQ3jPgUZB6LZb","input_tokens":1,"output_tokens":141,"content":[{"text":"Now let me check if `fmt` is already imported (I'll need it for generating test content).","type":"text"},{"id":"toolu_011j5o1E8bGbn8FUqRDj74Ft","input":{"pattern":"^import\"","path":"/repo/cli/cmd/entire/cli/integration_test/attribution_test.go","output_mode":"content"},"name":"Grep","result":{"output":"No matches found","status":"success"},"type":"tool_use"}]} @@ -87,11 +87,11 @@ {"v":1,"agent":"claude-code","cli_version":"0.5.1","type":"assistant","ts":"2026-03-27T09:10:53.322Z","id":"msg_01Tz1rwkmidBdMdVRyuMg7Ch","input_tokens":1,"output_tokens":324,"content":[{"text":"The test reproduces the bug exactly:\n\n```\nSecond cycle attribution: agent=4, human_added=52, human_modified=0, human_removed=0, total=56, pct=7.1%\nHumanAdded = 52, want 0 (utils.go was committed before this cycle; stale AttributionBaseCommit?)\nAgentPercentage = 7.1%, want 100% (only agent lines in this commit)\n```\n\nThe 52 `human_added` lines are the 50 `utils.go` functions plus the 2-line header — exactly the unrelated file that was committed *before* the second cycle. The agent percentage drops from 100% to 7.1% because of the inflated denominator.\n\nThis matches the production bug pattern you saw: `agent_lines: 36, human_added: 587, agent_percentage: 5.78%` on a commit that should have been 100% agent or close to it.\n\nThe root cause is confirmed: `postCommitUpdateBaseCommitOnly` (line 1185) advances `BaseCommit` but not `AttributionBaseCommit`. The same gap exists in `updateBaseCommitIfChanged` (line 1144). Both paths create drift between the two fields, causing subsequent condensations to diff against a stale base and attribute unrelated prior changes to the wrong commit.\n\nWant me to implement the fix now?","type":"text"}]} {"v":1,"agent":"claude-code","cli_version":"0.5.1","type":"user","ts":"2026-03-27T09:47:25.248Z","content":[{"id":"9d4ee26b-78a9-40e1-bf57-f6771edb7285","text":"yeah, let's give it a try"}]} {"v":1,"agent":"claude-code","cli_version":"0.5.1","type":"assistant","ts":"2026-03-27T09:47:39.549Z","id":"msg_019tYfhRtZLxQuKeCuryX5cF","input_tokens":3,"output_tokens":118,"content":[{"id":"toolu_01AQTu9iL32gJKaJmTHTDbSR","input":{"file_path":"/repo/cli/cmd/entire/cli/strategy/manual_commit_hooks.go","offset":1133,"limit":70},"name":"Read","result":{"output":" 1133→func (s *ManualCommitStrategy) updateBaseCommitIfChanged(ctx context.Context, state *SessionState, newHead string) {\n 1134→\tlogCtx := logging.WithComponent(ctx, \"checkpoint\")\n 1135→\t// Only update ACTIVE sessions. IDLE/ENDED sessions are kept around for\n 1136→\t// LastCheckpointID reuse and should not be advanced to HEAD.\n 1137→\tif !state.Phase.IsActive() {\n 1138→\t\tlogging.Debug(logCtx, \"post-commit: updateBaseCommitIfChanged skipped non-active session\",\n 1139→\t\t\tslog.String(\"session_id\", state.SessionID),\n 1140→\t\t\tslog.String(\"phase\", string(state.Phase)),\n 1141→\t\t)\n 1142→\t\treturn\n 1143→\t}\n 1144→\tif state.BaseCommit != newHead {\n 1145→\t\tstate.BaseCommit = newHead\n 1146→\t\tlogging.Debug(logCtx, \"post-commit: updated BaseCommit\",\n 1147→\t\t\tslog.String(\"session_id\", state.SessionID),\n 1148→\t\t\tslog.String(\"new_head\", truncateHash(newHead)),\n 1149→\t\t)\n 1150→\t}\n 1151→}\n 1152→\n 1153→// postCommitUpdateBaseCommitOnly updates BaseCommit for all sessions on the current\n 1154→// worktree when a commit has no Entire-Checkpoint trailer. This prevents BaseCommit\n 1155→// from going stale, which would cause future PrepareCommitMsg calls to skip the\n 1156→// session (BaseCommit != currentHeadHash filter).\n 1157→//\n 1158→// Unlike the full PostCommit flow, this does NOT fire EventGitCommit or trigger\n 1159→// condensation — it only keeps BaseCommit in sync with HEAD.\n 1160→func (s *ManualCommitStrategy) postCommitUpdateBaseCommitOnly(ctx context.Context, head *plumbing.Reference) {\n 1161→\tlogCtx := logging.WithComponent(ctx, \"checkpoint\")\n 1162→\tworktreePath, err := paths.WorktreeRoot(ctx)\n 1163→\tif err != nil {\n 1164→\t\treturn // Silent failure — hooks must be resilient\n 1165→\t}\n 1166→\n 1167→\tsessions, err := s.findSessionsForWorktree(ctx, worktreePath)\n 1168→\tif err != nil || len(sessions) == 0 {\n 1169→\t\treturn\n 1170→\t}\n 1171→\n 1172→\tnewHead := head.Hash().String()\n 1173→\tfor _, state := range sessions {\n 1174→\t\t// Only update active sessions. Idle/ended sessions are kept around for\n 1175→\t\t// LastCheckpointID reuse and should not be advanced to HEAD.\n 1176→\t\tif !state.Phase.IsActive() {\n 1177→\t\t\tcontinue\n 1178→\t\t}\n 1179→\t\tif state.BaseCommit != newHead {\n 1180→\t\t\tlogging.Debug(logCtx, \"post-commit (no trailer): updating BaseCommit\",\n 1181→\t\t\t\tslog.String(\"session_id\", state.SessionID),\n 1182→\t\t\t\tslog.String(\"old_base\", truncateHash(state.BaseCommit)),\n 1183→\t\t\t\tslog.String(\"new_head\", truncateHash(newHead)),\n 1184→\t\t\t)\n 1185→\t\t\tstate.BaseCommit = newHead\n 1186→\t\t\tif err := s.saveSessionState(ctx, state); err != nil {\n 1187→\t\t\t\tlogging.Warn(logCtx, \"failed to update session state\",\n 1188→\t\t\t\t\tslog.String(\"session_id\", state.SessionID),\n 1189→\t\t\t\t\tslog.String(\"error\", err.Error()))\n 1190→\t\t\t}\n 1191→\t\t}\n 1192→\t}\n 1193→}\n 1194→\n 1195→// truncateHash safely truncates a git hash to 7 chars for logging.\n 1196→func truncateHash(h string) string {\n 1197→\tif len(h) \u003e 7 {\n 1198→\t\treturn h[:7]\n 1199→\t}\n 1200→\treturn h\n 1201→}\n 1202→","status":"success","file":{"filePath":"/repo/cli/cmd/entire/cli/strategy/manual_commit_hooks.go","numLines":70}},"type":"tool_use"}]} -{"v":1,"agent":"claude-code","cli_version":"0.5.1","type":"assistant","ts":"2026-03-27T09:48:41.300Z","id":"msg_01MxSZ6swApVUTjmiviTS5YH","input_tokens":1,"output_tokens":3287,"content":[{"text":"Two locations need the fix. The key insight: if the unrelated commit doesn't touch agent files, `AttributionBaseCommit` can safely advance because the file content is identical at both commits. PromptAttributions remain valid.","type":"text"},{"id":"toolu_01J21sfCchkVzVRJ3o4osmML","input":{"replace_all":false,"file_path":"/repo/cli/cmd/entire/cli/strategy/manual_commit_hooks.go","old_string":"\tif state.BaseCommit != newHead {\n\t\tstate.BaseCommit = newHead\n\t\tlogging.Debug(logCtx, \"post-commit: updated BaseCommit\",\n\t\t\tslog.String(\"session_id\", state.SessionID),\n\t\t\tslog.String(\"new_head\", truncateHash(newHead)),\n\t\t)\n\t}\n}","new_string":"\tif state.BaseCommit != newHead {\n\t\tstate.BaseCommit = newHead\n\t\t// Keep AttributionBaseCommit in sync to prevent stale base drift.\n\t\t// Without this, a subsequent condensation would diff from the old base,\n\t\t// inflating human_added with lines from unrelated prior commits.\n\t\tstate.AttributionBaseCommit = newHead\n\t\tlogging.Debug(logCtx, \"post-commit: updated BaseCommit and AttributionBaseCommit\",\n\t\t\tslog.String(\"session_id\", state.SessionID),\n\t\t\tslog.String(\"new_head\", truncateHash(newHead)),\n\t\t)\n\t}\n}"},"name":"Edit","result":{"output":"The file /repo/cli/cmd/entire/cli/strategy/manual_commit_hooks.go has been updated successfully.","status":"success","file":{"filePath":"/repo/cli/cmd/entire/cli/strategy/manual_commit_hooks.go"}},"type":"tool_use"}]} +{"v":1,"agent":"claude-code","cli_version":"0.5.1","type":"assistant","ts":"2026-03-27T09:48:41.300Z","id":"msg_01MxSZ6swApVUTjmiviTS5YH","input_tokens":1,"output_tokens":3287,"content":[{"thinking":"","type":"thinking"},{"text":"Two locations need the fix. The key insight: if the unrelated commit doesn't touch agent files, `AttributionBaseCommit` can safely advance because the file content is identical at both commits. PromptAttributions remain valid.","type":"text"},{"id":"toolu_01J21sfCchkVzVRJ3o4osmML","input":{"replace_all":false,"file_path":"/repo/cli/cmd/entire/cli/strategy/manual_commit_hooks.go","old_string":"\tif state.BaseCommit != newHead {\n\t\tstate.BaseCommit = newHead\n\t\tlogging.Debug(logCtx, \"post-commit: updated BaseCommit\",\n\t\t\tslog.String(\"session_id\", state.SessionID),\n\t\t\tslog.String(\"new_head\", truncateHash(newHead)),\n\t\t)\n\t}\n}","new_string":"\tif state.BaseCommit != newHead {\n\t\tstate.BaseCommit = newHead\n\t\t// Keep AttributionBaseCommit in sync to prevent stale base drift.\n\t\t// Without this, a subsequent condensation would diff from the old base,\n\t\t// inflating human_added with lines from unrelated prior commits.\n\t\tstate.AttributionBaseCommit = newHead\n\t\tlogging.Debug(logCtx, \"post-commit: updated BaseCommit and AttributionBaseCommit\",\n\t\t\tslog.String(\"session_id\", state.SessionID),\n\t\t\tslog.String(\"new_head\", truncateHash(newHead)),\n\t\t)\n\t}\n}"},"name":"Edit","result":{"output":"The file /repo/cli/cmd/entire/cli/strategy/manual_commit_hooks.go has been updated successfully.","status":"success","file":{"filePath":"/repo/cli/cmd/entire/cli/strategy/manual_commit_hooks.go"}},"type":"tool_use"}]} {"v":1,"agent":"claude-code","cli_version":"0.5.1","type":"assistant","ts":"2026-03-27T09:48:55.238Z","id":"msg_01VzjVcMGV7BwVGSEoMUKLkz","input_tokens":1,"output_tokens":448,"content":[{"id":"toolu_01KNAEgc69z5osWrfjb1te5f","input":{"replace_all":false,"file_path":"/repo/cli/cmd/entire/cli/strategy/manual_commit_hooks.go","old_string":"\t\tif state.BaseCommit != newHead {\n\t\t\tlogging.Debug(logCtx, \"post-commit (no trailer): updating BaseCommit\",\n\t\t\t\tslog.String(\"session_id\", state.SessionID),\n\t\t\t\tslog.String(\"old_base\", truncateHash(state.BaseCommit)),\n\t\t\t\tslog.String(\"new_head\", truncateHash(newHead)),\n\t\t\t)\n\t\t\tstate.BaseCommit = newHead\n\t\t\tif err := s.saveSessionState(ctx, state); err != nil {","new_string":"\t\tif state.BaseCommit != newHead {\n\t\t\tlogging.Debug(logCtx, \"post-commit (no trailer): updating BaseCommit and AttributionBaseCommit\",\n\t\t\t\tslog.String(\"session_id\", state.SessionID),\n\t\t\t\tslog.String(\"old_base\", truncateHash(state.BaseCommit)),\n\t\t\t\tslog.String(\"new_head\", truncateHash(newHead)),\n\t\t\t)\n\t\t\tstate.BaseCommit = newHead\n\t\t\t// Keep AttributionBaseCommit in sync to prevent stale base drift.\n\t\t\t// Without this, a subsequent condensation would diff from the old base,\n\t\t\t// inflating human_added with lines from unrelated prior commits.\n\t\t\tstate.AttributionBaseCommit = newHead\n\t\t\tif err := s.saveSessionState(ctx, state); err != nil {"},"name":"Edit","result":{"output":"The file /repo/cli/cmd/entire/cli/strategy/manual_commit_hooks.go has been updated successfully.","status":"success","file":{"filePath":"/repo/cli/cmd/entire/cli/strategy/manual_commit_hooks.go"}},"type":"tool_use"}]} {"v":1,"agent":"claude-code","cli_version":"0.5.1","type":"assistant","ts":"2026-03-27T09:48:59.325Z","id":"msg_01Y9tVmBSytBVGJ5oXi2zPeY","input_tokens":1,"output_tokens":142,"content":[{"text":"Now let's run the test.","type":"text"},{"id":"toolu_01MVBvPMUDET9ZxtGapmULQP","input":{"command":"go test -tags integration -run TestManualCommit_AttributionStaleBase -v -count=1 ./cmd/entire/cli/integration_test/ 2\u003e\u00261","description":"Run the stale attribution base test after fix","timeout":120000},"name":"Bash","result":{"output":"=== RUN TestManualCommit_AttributionStaleBase\n=== PAUSE TestManualCommit_AttributionStaleBase\n=== CONT TestManualCommit_AttributionStaleBase\n attribution_test.go:548: First cycle: agent works → checkpoint → commit\n hooks.go:253: Hook user-prompt-submit output: ✓ Created orphan branch 'entire/checkpoints/v1' for session metadata\n hooks.go:253: Hook stop output: \n attribution_test.go:571: First commit: 3bfb809\n attribution_test.go:590: First cycle attribution: agent=4, human_added=0, total=4, pct=100.0%\n attribution_test.go:596: Starting new prompt (ACTIVE), then making unrelated commit\n hooks.go:253: Hook user-prompt-submit output: \n attribution_test.go:617: Unrelated commit: 7974211\n attribution_test.go:622: Second cycle: agent adds another function\n hooks.go:253: Hook stop output: \n attribution_test.go:640: Second commit: 42f4b59\n attribution_test.go:657: Second cycle attribution: agent=4, human_added=0, human_modified=0, human_removed=0, total=4, pct=100.0%\n--- PASS: TestManualCommit_AttributionStaleBase (6.99s)\nPASS\nok \tgithub.com/entireio/cli/cmd/entire/cli/integration_test\t8.695s","status":"success"},"type":"tool_use"}]} {"v":1,"agent":"claude-code","cli_version":"0.5.1","type":"assistant","ts":"2026-03-27T09:49:14.155Z","id":"msg_01G79xi6vseqoD9RzX8vbadV","input_tokens":1,"output_tokens":142,"content":[{"text":"Test passes. Second cycle now correctly shows `agent=4, human_added=0, pct=100.0%`.\n\nLet me run the full test suite to make sure nothing is broken.","type":"text"},{"id":"toolu_01FQ5KNK7oG688thxc8Yo8Yb","input":{"command":"mise run test:ci 2\u003e\u00261","description":"Run full CI test suite","timeout":600000},"name":"Bash","result":{"output":"Exit code 1\n[test:ci] $ go test -tags=integration -race ./...\n? \tgithub.com/entireio/cli/cmd/entire\t[no test files]\nok \tgithub.com/entireio/cli/cmd/entire/cli\t17.337s\nok \tgithub.com/entireio/cli/cmd/entire/cli/agent\t2.240s\nok \tgithub.com/entireio/cli/cmd/entire/cli/agent/claudecode\t6.267s\nok \tgithub.com/entireio/cli/cmd/entire/cli/agent/copilotcli\t3.616s\nok \tgithub.com/entireio/cli/cmd/entire/cli/agent/cursor\t3.146s\nok \tgithub.com/entireio/cli/cmd/entire/cli/agent/external\t13.421s\nok \tgithub.com/entireio/cli/cmd/entire/cli/agent/factoryaidroid\t1.802s\nok \tgithub.com/entireio/cli/cmd/entire/cli/agent/geminicli\t1.580s\nok \tgithub.com/entireio/cli/cmd/entire/cli/agent/opencode\t5.726s\n? \tgithub.com/entireio/cli/cmd/entire/cli/agent/testutil\t[no test files]\n? \tgithub.com/entireio/cli/cmd/entire/cli/agent/types\t[no test files]\n? \tgithub.com/entireio/cli/cmd/entire/cli/agent/vogon\t[no test files]\nok \tgithub.com/entireio/cli/cmd/entire/cli/api\t2.420s\nok \tgithub.com/entireio/cli/cmd/entire/cli/auth\t2.294s\nok \tgithub.com/entireio/cli/cmd/entire/cli/benchutil\t1.895s [no tests to run]\nok \tgithub.com/entireio/cli/cmd/entire/cli/checkpoint\t4.291s\nok \tgithub.com/entireio/cli/cmd/entire/cli/checkpoint/id\t(cached)\nok \tgithub.com/entireio/cli/cmd/entire/cli/gitops\t(cached)\nok \tgithub.com/entireio/cli/cmd/entire/cli/integration_test\t87.425s\n? \tgithub.com/entireio/cli/cmd/entire/cli/jsonutil\t[no test files]\nok \tgithub.com/entireio/cli/cmd/entire/cli/logging\t2.748s\nok \tgithub.com/entireio/cli/cmd/entire/cli/osroot\t(cached)\nok \tgithub.com/entireio/cli/cmd/entire/cli/paths\t2.015s\nok \tgithub.com/entireio/cli/cmd/entire/cli/session\t1.609s\nok \tgithub.com/entireio/cli/cmd/entire/cli/settings\t1.619s\n2026/03/27 10:49:28 INFO checkpoint-remote: fetched metadata branch from URL\n[entire] Backed up existing prepare-commit-msg to prepare-commit-msg.pre-entire\n[entire] Warning: replacing prepare-commit-msg (backup prepare-commit-msg.pre-entire already exists from a previous install)\n[entire] Backed up existing prepare-commit-msg to prepare-commit-msg.pre-entire\n[entire] Backed up existing prepare-commit-msg to prepare-commit-msg.pre-entire\n[entire] Backed up existing pre-push to pre-push.pre-entire\n[entire] Backed up existing prepare-commit-msg to prepare-commit-msg.pre-entire\n[entire] Backed up existing prepare-commit-msg to prepare-commit-msg.pre-entire\n[entire] Backed up existing prepare-commit-msg to prepare-commit-msg.pre-entire\n[entire] Backed up existing prepare-commit-msg to prepare-commit-msg.pre-entire\n[entire] Backed up existing prepare-commit-msg to prepare-commit-msg.pre-entire\n[entire] Warning: prepare-commit-msg was modified since install; backup prepare-commit-msg.pre-entire left in place\n2026/03/27 10:49:32 INFO phase transition component=session session_id=2026-01-23-staging-test event=TurnStart from=\"\" to=active\n2026/03/27 10:49:32 INFO initialized shadow session component=hooks session_id=2026-01-23-staging-test\n2026/03/27 10:49:32 INFO created shadow branch and committed changes component=checkpoint shadow_branch=entire/956c834-e3b0c4\n2026/03/27 10:49:32 INFO checkpoint saved component=checkpoint strategy=manual-commit checkpoint_type=session checkpoint_count=1 modified_files=1 new_files=0 deleted_files=0 shadow_branch=entire/956c834-e3b0c4 branch_created=true\n2026/03/27 10:49:32 INFO committed changes to shadow branch component=checkpoint shadow_branch=entire/956c834-e3b0c4\n2026/03/27 10:49:32 INFO checkpoint saved component=checkpoint strategy=manual-commit checkpoint_type=session checkpoint_count=2 modified_files=1 new_files=0 deleted_files=0 shadow_branch=entire/956c834-e3b0c4 branch_created=false\n2026/03/27 10:49:32 INFO phase transition component=session session_id=2026-01-23-unstaged-test event=TurnStart from=\"\" to=active\n2026/03/27 10:49:32 INFO initialized shadow session component=hooks session_id=2026-01-23-unstaged-test\n2026/03/27 10:49:32 INFO created shadow branch and committed changes component=checkpoint shadow_branch=entire/956c834-e3b0c4\n2026/03/27 10:49:32 INFO checkpoint saved component=checkpoint strategy=manual-commit checkpoint_type=session checkpoint_count=1 modified_files=1 new_files=0 deleted_files=0 shadow_branch=entire/956c834-e3b0c4 branch_created=true\n2026/03/27 10:49:32 INFO phase transition component=session session_id=2026-01-23-always-stored-test event=TurnStart from=\"\" to=active\n2026/03/27 10:49:32 INFO initialized shadow session component=hooks session_id=2026-01-23-always-stored-test\n2026/03/27 10:49:32 INFO created shadow branch and committed changes component=checkpoint shadow_branch=entire/956c834-e3b0c4\n2026/03/27 10:49:32 INFO checkpoint saved component=checkpoint strategy=manual-commit checkpoint_type=session checkpoint_count=1 modified_files=1 new_files=0 deleted_files=0 shadow_branch=entire/956c834-e3b0c4 branch_created=true\n2026/03/27 10:49:32 INFO committed changes to shadow branch component=checkpoint shadow_branch=entire/956c834-e3b0c4\n2026/03/2\n\n... [20012 characters truncated] ...\n\ngent_lines=2 human_added=0 human_modified=0 human_removed=0 total_committed=2 agent_percentage=100 accumulated_user_added=0 accumulated_user_removed=0 files_touched=2\n2026/03/27 10:49:41 INFO session condensed component=checkpoint strategy=manual-commit session_id=test-carry-forward-partial checkpoint_id=cf1cf2cf3cf4 checkpoints_condensed=1 transcript_lines=2\n2026/03/27 10:49:41 INFO post-commit: carried forward remaining files component=checkpoint session_id=test-carry-forward-partial remaining_files=1\n2026/03/27 10:49:41 INFO shadow branch deleted component=checkpoint strategy=manual-commit shadow_branch=entire/4afc80a-e3b0c4\n2026/03/27 10:49:41 INFO created shadow branch and committed changes component=checkpoint shadow_branch=entire/4afc80a-e3b0c4\n2026/03/27 10:49:41 INFO checkpoint saved component=checkpoint strategy=manual-commit checkpoint_type=session checkpoint_count=1 modified_files=0 new_files=2 deleted_files=0 shadow_branch=entire/4afc80a-e3b0c4 branch_created=true\n2026/03/27 10:49:41 INFO attribution calculated component=attribution agent_lines=2 human_added=0 human_modified=0 human_removed=0 total_committed=2 agent_percentage=100 accumulated_user_added=0 accumulated_user_removed=0 files_touched=2\n2026/03/27 10:49:41 INFO session condensed component=checkpoint strategy=manual-commit session_id=test-carry-forward-all checkpoint_id=cf5cf6cf7cf8 checkpoints_condensed=1 transcript_lines=2\n2026/03/27 10:49:41 INFO shadow branch deleted component=checkpoint strategy=manual-commit shadow_branch=entire/4afc80a-e3b0c4\n2026/03/27 10:49:41 INFO created shadow branch and committed changes component=checkpoint shadow_branch=entire/4afc80a-e3b0c4\n2026/03/27 10:49:41 INFO checkpoint saved component=checkpoint strategy=manual-commit checkpoint_type=session checkpoint_count=1 modified_files=1 new_files=0 deleted_files=0 shadow_branch=entire/4afc80a-e3b0c4 branch_created=true\n2026/03/27 10:49:41 INFO attribution calculated component=attribution agent_lines=1 human_added=0 human_modified=0 human_removed=0 total_committed=1 agent_percentage=100 accumulated_user_added=0 accumulated_user_removed=0 files_touched=1\n2026/03/27 10:49:41 INFO session condensed component=checkpoint strategy=manual-commit session_id=test-turn-checkpoint-ids checkpoint_id=a1b2c3d4e5f6 checkpoints_condensed=1 transcript_lines=2\n2026/03/27 10:49:41 INFO shadow branch deleted component=checkpoint strategy=manual-commit shadow_branch=entire/4afc80a-e3b0c4\n2026/03/27 10:49:41 INFO created shadow branch and committed changes component=checkpoint shadow_branch=entire/4afc80a-e3b0c4\n2026/03/27 10:49:41 INFO checkpoint saved component=checkpoint strategy=manual-commit checkpoint_type=session checkpoint_count=1 modified_files=1 new_files=0 deleted_files=0 shadow_branch=entire/4afc80a-e3b0c4 branch_created=true\n2026/03/27 10:49:41 INFO attribution calculated component=attribution agent_lines=1 human_added=0 human_modified=0 human_removed=0 total_committed=1 agent_percentage=100 accumulated_user_added=0 accumulated_user_removed=0 files_touched=1\n2026/03/27 10:49:41 INFO session condensed component=checkpoint strategy=manual-commit session_id=test-idle-no-turn-ids checkpoint_id=c3d4e5f6a1b2 checkpoints_condensed=1 transcript_lines=2\n2026/03/27 10:49:41 INFO shadow branch deleted component=checkpoint strategy=manual-commit shadow_branch=entire/4afc80a-e3b0c4\n2026/03/27 10:49:41 INFO created shadow branch and committed changes component=checkpoint shadow_branch=entire/4afc80a-e3b0c4\n2026/03/27 10:49:41 INFO checkpoint saved component=checkpoint strategy=manual-commit checkpoint_type=session checkpoint_count=1 modified_files=1 new_files=0 deleted_files=0 shadow_branch=entire/4afc80a-e3b0c4 branch_created=true\n2026/03/27 10:49:41 INFO attribution calculated component=attribution agent_lines=1 human_added=0 human_modified=0 human_removed=0 total_committed=1 agent_percentage=100 accumulated_user_added=0 accumulated_user_removed=0 files_touched=1\n2026/03/27 10:49:41 INFO session condensed component=checkpoint strategy=manual-commit session_id=test-partial-failure checkpoint_id=a1b2c3d4e5f6 checkpoints_condensed=1 transcript_lines=2\n2026/03/27 10:49:41 INFO shadow branch deleted component=checkpoint strategy=manual-commit shadow_branch=entire/4afc80a-e3b0c4\n2026/03/27 10:49:41 INFO created shadow branch and committed changes component=checkpoint shadow_branch=entire/6102ad1-e3b0c4\n2026/03/27 10:49:41 INFO checkpoint saved component=checkpoint strategy=manual-commit checkpoint_type=session checkpoint_count=1 modified_files=1 new_files=1 deleted_files=0 shadow_branch=entire/6102ad1-e3b0c4 branch_created=true\n2026/03/27 10:49:41 INFO attribution calculated component=attribution agent_lines=1 human_added=0 human_modified=0 human_removed=0 total_committed=1 agent_percentage=100 accumulated_user_added=0 accumulated_user_removed=0 files_touched=1\n2026/03/27 10:49:41 INFO session condensed component=checkpoint strategy=manual-commit session_id=test-partial-failure chec","status":"error"},"type":"tool_use"}]} -{"v":1,"agent":"claude-code","cli_version":"0.5.1","type":"assistant","ts":"2026-03-27T09:51:12.492Z","id":"msg_01LFFgYLoDh9EfcbZYazJQJc","input_tokens":1,"output_tokens":181,"content":[{"id":"toolu_01T1jfz43T35aAv5Ue7QTwSa","input":{"command":"mise run test:ci 2\u003e\u00261 | tail -30","description":"Check CI test results (tail)","timeout":600000},"name":"Bash","result":{"output":"--- canary: roger-roger ---\n[e2e/tests]········\nDONE 8 tests in 2.106s\nE2E Test Report\n═══════════════\n\nTotal: 4 Passed: 4 Failed: 0 Skipped: 0\n\n\u001b[32m✓\u001b[0m TestExternalAgentDeepCheckpointValidation (1.5s)\n \u001b[32m✓\u001b[0m roger-roger 1.5s\n\n\u001b[32m✓\u001b[0m TestExternalAgentMultipleTurnsManualCommit (1.9s)\n \u001b[32m✓\u001b[0m roger-roger 1.9s\n\n\u001b[32m✓\u001b[0m TestExternalAgentSessionMetadata (1.7s)\n \u001b[32m✓\u001b[0m roger-roger 1.7s\n\n\u001b[32m✓\u001b[0m TestExternalAgentSingleSessionManualCommit (1.7s)\n \u001b[32m✓\u001b[0m roger-roger 1.7s\n\n\u001b[32m🎉 ALL 4 TESTS PASSED 🎉\u001b[0m\n\n\nentire binary: /repo/cli/entire\nentire version: Entire CLI v0.5.1-dev-a01c88cf (a01c88cf)\nGo version: go1.26.1\nOS/Arch: darwin/arm64\n\nartifacts: /repo/cli/e2e/artifacts/canary-2026-03-27T10-52-23","status":"success"},"type":"tool_use"}]} +{"v":1,"agent":"claude-code","cli_version":"0.5.1","type":"assistant","ts":"2026-03-27T09:51:12.492Z","id":"msg_01LFFgYLoDh9EfcbZYazJQJc","input_tokens":1,"output_tokens":181,"content":[{"thinking":"","type":"thinking"},{"id":"toolu_01T1jfz43T35aAv5Ue7QTwSa","input":{"command":"mise run test:ci 2\u003e\u00261 | tail -30","description":"Check CI test results (tail)","timeout":600000},"name":"Bash","result":{"output":"--- canary: roger-roger ---\n[e2e/tests]········\nDONE 8 tests in 2.106s\nE2E Test Report\n═══════════════\n\nTotal: 4 Passed: 4 Failed: 0 Skipped: 0\n\n\u001b[32m✓\u001b[0m TestExternalAgentDeepCheckpointValidation (1.5s)\n \u001b[32m✓\u001b[0m roger-roger 1.5s\n\n\u001b[32m✓\u001b[0m TestExternalAgentMultipleTurnsManualCommit (1.9s)\n \u001b[32m✓\u001b[0m roger-roger 1.9s\n\n\u001b[32m✓\u001b[0m TestExternalAgentSessionMetadata (1.7s)\n \u001b[32m✓\u001b[0m roger-roger 1.7s\n\n\u001b[32m✓\u001b[0m TestExternalAgentSingleSessionManualCommit (1.7s)\n \u001b[32m✓\u001b[0m roger-roger 1.7s\n\n\u001b[32m🎉 ALL 4 TESTS PASSED 🎉\u001b[0m\n\n\nentire binary: /repo/cli/entire\nentire version: Entire CLI v0.5.1-dev-a01c88cf (a01c88cf)\nGo version: go1.26.1\nOS/Arch: darwin/arm64\n\nartifacts: /repo/cli/e2e/artifacts/canary-2026-03-27T10-52-23","status":"success"},"type":"tool_use"}]} {"v":1,"agent":"claude-code","cli_version":"0.5.1","type":"assistant","ts":"2026-03-27T09:52:58.236Z","id":"msg_01P9eTDUvpxxGJ13gTov3QeG","input_tokens":1,"output_tokens":120,"content":[{"id":"toolu_01TSvnrUS5SxMDikDx9pqmaw","input":{"command":"mise run test:ci 2\u003e\u00261 | grep -E \"^(ok|FAIL|---)\" | head -30","description":"Check which test packages passed/failed","timeout":600000},"name":"Bash","result":{"output":"ok \tgithub.com/entireio/cli/cmd/entire/cli\t15.878s\nok \tgithub.com/entireio/cli/cmd/entire/cli/agent\t(cached)\nok \tgithub.com/entireio/cli/cmd/entire/cli/agent/claudecode\t(cached)\nok \tgithub.com/entireio/cli/cmd/entire/cli/agent/copilotcli\t(cached)\nok \tgithub.com/entireio/cli/cmd/entire/cli/agent/cursor\t(cached)\nok \tgithub.com/entireio/cli/cmd/entire/cli/agent/external\t4.735s\nok \tgithub.com/entireio/cli/cmd/entire/cli/agent/factoryaidroid\t(cached)\nok \tgithub.com/entireio/cli/cmd/entire/cli/agent/geminicli\t(cached)\nok \tgithub.com/entireio/cli/cmd/entire/cli/agent/opencode\t(cached)\nok \tgithub.com/entireio/cli/cmd/entire/cli/api\t(cached)\nok \tgithub.com/entireio/cli/cmd/entire/cli/auth\t(cached)\nok \tgithub.com/entireio/cli/cmd/entire/cli/benchutil\t(cached) [no tests to run]\nok \tgithub.com/entireio/cli/cmd/entire/cli/checkpoint\t(cached)\nok \tgithub.com/entireio/cli/cmd/entire/cli/checkpoint/id\t(cached)\nok \tgithub.com/entireio/cli/cmd/entire/cli/gitops\t(cached)\nok \tgithub.com/entireio/cli/cmd/entire/cli/integration_test\t(cached)\nok \tgithub.com/entireio/cli/cmd/entire/cli/logging\t(cached)\nok \tgithub.com/entireio/cli/cmd/entire/cli/osroot\t(cached)\nok \tgithub.com/entireio/cli/cmd/entire/cli/paths\t(cached)\nok \tgithub.com/entireio/cli/cmd/entire/cli/session\t(cached)\nok \tgithub.com/entireio/cli/cmd/entire/cli/settings\t(cached)\nok \tgithub.com/entireio/cli/cmd/entire/cli/strategy\t61.238s\nok \tgithub.com/entireio/cli/cmd/entire/cli/stringutil\t(cached)\nok \tgithub.com/entireio/cli/cmd/entire/cli/summarize\t(cached)\nok \tgithub.com/entireio/cli/cmd/entire/cli/telemetry\t(cached)\nok \tgithub.com/entireio/cli/cmd/entire/cli/textutil\t(cached)\nok \tgithub.com/entireio/cli/cmd/entire/cli/trail\t(cached)\nok \tgithub.com/entireio/cli/cmd/entire/cli/trailers\t(cached)\nok \tgithub.com/entireio/cli/cmd/entire/cli/transcript\t(cached)\nok \tgithub.com/entireio/cli/cmd/entire/cli/validation\t(cached)","status":"success"},"type":"tool_use"}]} {"v":1,"agent":"claude-code","cli_version":"0.5.1","type":"assistant","ts":"2026-03-27T09:55:04.282Z","id":"msg_0198EYjFRMHpjDHepnTcHf8P","input_tokens":1,"output_tokens":144,"content":[{"text":"All packages pass. The initial exit code 1 was likely from the first run with the failing test (cached). Let me confirm clean:","type":"text"},{"id":"toolu_01VkDxnEFanzWrMUEfb7Yvft","input":{"command":"mise run test:ci 2\u003e\u00261 | grep -E \"^FAIL\" | head -5","description":"Check for any FAIL lines","timeout":600000},"name":"Bash","result":{"output":"(Bash completed with no output)","status":"success"},"type":"tool_use"}]} {"v":1,"agent":"claude-code","cli_version":"0.5.1","type":"assistant","ts":"2026-03-27T09:56:57.140Z","id":"msg_01JzHWaLWH4aEH4xFChnKmvo","input_tokens":1,"output_tokens":251,"content":[{"text":"Zero failures. All unit tests, integration tests, and E2E canary tests pass.\n\n**Summary:**\n\n- **Bug**: `updateBaseCommitIfChanged` and `postCommitUpdateBaseCommitOnly` advanced `BaseCommit` but not `AttributionBaseCommit` when condensation was skipped. This caused `AttributionBaseCommit` to drift behind, making subsequent condensations diff against a stale base and inflate `human_added` with lines from unrelated prior commits.\n\n- **Fix**: Two one-line additions — `state.AttributionBaseCommit = newHead` alongside the existing `state.BaseCommit = newHead` in both functions (`manual_commit_hooks.go` lines ~1146 and ~1187).\n\n- **Test**: `TestManualCommit_AttributionStaleBase` — reproduces the exact production pattern: agent works → commit → unrelated commit while ACTIVE → agent works again → second commit shows inflated attribution. Before the fix: `human_added=52, pct=7.1%`. After: `human_added=0, pct=100%`.","type":"text"}]} diff --git a/cmd/entire/cli/transcript/compact/testdata/gemini_expected.jsonl b/cmd/entire/cli/transcript/compact/testdata/gemini_expected.jsonl index f56a9eefb8..60622eded0 100644 --- a/cmd/entire/cli/transcript/compact/testdata/gemini_expected.jsonl +++ b/cmd/entire/cli/transcript/compact/testdata/gemini_expected.jsonl @@ -1,5 +1,5 @@ {"v":1,"agent":"gemini-cli","cli_version":"0.5.1","type":"user","ts":"2026-03-18T21:05:13.497Z","content":[{"text":"create a test.go"}]} -{"v":1,"agent":"gemini-cli","cli_version":"0.5.1","type":"assistant","ts":"2026-03-18T21:05:20.932Z","id":"23489833-e220-4b90-b6c6-beb8313ea7b1","input_tokens":16167,"output_tokens":10,"content":[{"id":"write_file-1773867918573-e6a8d3547876b","input":{"content":"","file_path":"test.go"},"name":"write_file","result":{"output":"Successfully created and wrote to new file: /private/tmp/cli-updated-gemini-hooks/test.go.","status":"success"},"type":"tool_use"}]} -{"v":1,"agent":"gemini-cli","cli_version":"0.5.1","type":"assistant","ts":"2026-03-18T21:05:47.368Z","id":"73b7e24c-41e1-4851-ac19-9dc0181c7ed3","input_tokens":16207,"output_tokens":12,"content":[{"id":"list_directory-1773867946612-3a5636ee59c078","input":{"dir_path":"cmd/entire/cli/"},"name":"list_directory","result":{"output":"Directory listing for /private/tmp/cli-updated-gemini-hooks/cmd/entire/cli:\n[DIR] agent\n[DIR] benchutil\n[DIR] checkpoint\n[DIR] gitops\n[DIR] integration_test\n[DIR] jsonutil\n[DIR] logging\n[DIR] osroot\n[DIR] paths\n[DIR] session\n[DIR] settings\n[DIR] strategy\n[DIR] stringutil\n[DIR] summarize\n[DIR] telemetry\n[DIR] testutil\n[DIR] textutil\n[DIR] trail\n[DIR] trailers\n[DIR] transcript\n[DIR] validation\n[DIR] versioncheck\n[DIR] versioninfo\nbench_enable_test.go\nbench_test.go\nclean_test.go\nclean.go\ncommit_message_test.go\ncommit_message.go\nconfig_test.go\nconfig.go\nconstants.go\ndoctor_test.go\ndoctor.go\nerrors.go\nexplain_test.go\nexplain.go\ngit_operations_test.go\ngit_operations.go\nhelp.go\nhook_registry_test.go\nhook_registry.go\nhooks_claudecode_posttodo.go\nhooks_cmd.go\nhooks_git_cmd_test.go\nhooks_git_cmd.go\nhooks_test.go\nhooks.go\nlifecycle_test.go\nlifecycle.go\nmetadata_test.go\nmetadata.go\nphase_wiring_test.go\nreset_test.go\nreset.go\nresume_test.go\nresume.go\nrewind.go\nroot_test.go\nroot.go\nsetup_test.go\nsetup.go\nstate_test.go\nstate.go\nstatus_style.go\nstatus_test.go\nstatus.go\ntrail_cmd.go\ntranscript_test.go\ntranscript.go\ntypes.go\nutils_test.go\nutils.go","status":"success"},"type":"tool_use"}]} -{"v":1,"agent":"gemini-cli","cli_version":"0.5.1","type":"assistant","ts":"2026-03-18T21:06:01.208Z","id":"a1d705f3-a41d-464a-b7ee-7e39719d58af","input_tokens":16654,"output_tokens":190,"content":[{"text":"It seems I misunderstood and created a `test.go` file in the root directory. In Go projects, test files typically reside within the package they are testing and end with `_test.go`.\n\nBased on the project structure, I see existing tests in:\n- `cmd/entire/cli/` (unit tests)\n- `cmd/entire/cli/integration_test/` (integration tests)\n- `e2e/tests/` (end-to-end tests)\n\nCould you please clarify what kind of test you'd like to create (unit, integration, or E2E)? Once I know that, I can place the file in the correct location and suggest some initial content.\n\nI will remove the `test.go` file from the root directory first.","type":"text"},{"id":"run_shell_command-1773867961207-18a27a8fe3875","input":{"command":"rm test.go","description":"Remove the incorrectly created test.go file from the root directory."},"name":"run_shell_command","result":{"output":"Output: (empty)\nProcess Group PGID: 26712","status":"success"},"type":"tool_use"}]} -{"v":1,"agent":"gemini-cli","cli_version":"0.5.1","type":"assistant","ts":"2026-03-18T21:08:23.669Z","id":"8253d864-65d0-4b66-9d63-2948d8132b98","input_tokens":16867,"output_tokens":41,"content":[{"text":"I have removed the `test.go` file. Please let me know if you'd like a unit, integration, or E2E test, and I can create it in the appropriate location.","type":"text"}]} +{"v":1,"agent":"gemini-cli","cli_version":"0.5.1","type":"assistant","ts":"2026-03-18T21:05:20.932Z","id":"23489833-e220-4b90-b6c6-beb8313ea7b1","input_tokens":16167,"output_tokens":10,"content":[{"thinking":"Creating the Test File\n\nI'm focusing now on the action of creating the file itself. My immediate task is to invoke the `write_file` tool. The name and purpose are clear. So, I will proceed to create an empty `test.go` file right now.","type":"thinking"},{"id":"write_file-1773867918573-e6a8d3547876b","input":{"content":"","file_path":"test.go"},"name":"write_file","result":{"output":"Successfully created and wrote to new file: /private/tmp/cli-updated-gemini-hooks/test.go.","status":"success"},"type":"tool_use"}]} +{"v":1,"agent":"gemini-cli","cli_version":"0.5.1","type":"assistant","ts":"2026-03-18T21:05:47.368Z","id":"73b7e24c-41e1-4851-ac19-9dc0181c7ed3","input_tokens":16207,"output_tokens":12,"content":[{"thinking":"Defining Test Requirements\n\nI've created the \"test.go\" file, as requested. Currently, I'm analyzing the user's intent to understand the test's scope and content. To proceed effectively, I'll need to clarify the specifics of the desired test. Considering the interactive nature, I will hold back from immediate clarification.","type":"thinking"},{"thinking":"Examining Testing Conventions\n\nI've got the `test.go` file ready, and I'm now diving into the project's testing norms. I'm focusing on locating tests and their naming conventions within the existing project structure. To understand the best place to create the new test file, I will list the contents of the `cmd/entire/cli/` directory to see how they've organized their tests. My goal is to create a suitable test within the existing framework.","type":"thinking"},{"id":"list_directory-1773867946612-3a5636ee59c078","input":{"dir_path":"cmd/entire/cli/"},"name":"list_directory","result":{"output":"Directory listing for /private/tmp/cli-updated-gemini-hooks/cmd/entire/cli:\n[DIR] agent\n[DIR] benchutil\n[DIR] checkpoint\n[DIR] gitops\n[DIR] integration_test\n[DIR] jsonutil\n[DIR] logging\n[DIR] osroot\n[DIR] paths\n[DIR] session\n[DIR] settings\n[DIR] strategy\n[DIR] stringutil\n[DIR] summarize\n[DIR] telemetry\n[DIR] testutil\n[DIR] textutil\n[DIR] trail\n[DIR] trailers\n[DIR] transcript\n[DIR] validation\n[DIR] versioncheck\n[DIR] versioninfo\nbench_enable_test.go\nbench_test.go\nclean_test.go\nclean.go\ncommit_message_test.go\ncommit_message.go\nconfig_test.go\nconfig.go\nconstants.go\ndoctor_test.go\ndoctor.go\nerrors.go\nexplain_test.go\nexplain.go\ngit_operations_test.go\ngit_operations.go\nhelp.go\nhook_registry_test.go\nhook_registry.go\nhooks_claudecode_posttodo.go\nhooks_cmd.go\nhooks_git_cmd_test.go\nhooks_git_cmd.go\nhooks_test.go\nhooks.go\nlifecycle_test.go\nlifecycle.go\nmetadata_test.go\nmetadata.go\nphase_wiring_test.go\nreset_test.go\nreset.go\nresume_test.go\nresume.go\nrewind.go\nroot_test.go\nroot.go\nsetup_test.go\nsetup.go\nstate_test.go\nstate.go\nstatus_style.go\nstatus_test.go\nstatus.go\ntrail_cmd.go\ntranscript_test.go\ntranscript.go\ntypes.go\nutils_test.go\nutils.go","status":"success"},"type":"tool_use"}]} +{"v":1,"agent":"gemini-cli","cli_version":"0.5.1","type":"assistant","ts":"2026-03-18T21:06:01.208Z","id":"a1d705f3-a41d-464a-b7ee-7e39719d58af","input_tokens":16654,"output_tokens":190,"content":[{"thinking":"Evaluating File Placement\n\nI've created the `test.go` file, but now I'm reconsidering its location. Given the observed project structure and standard Go practices, it seems it should reside in a more specific directory. I'm now leaning towards placing it alongside the relevant source files and renaming it to follow the typical `_test.go` convention.","type":"thinking"},{"thinking":"Questioning Testing Strategy\n\nI'm now seeking clarification on the intended test type: unit, integration, or E2E. My current assumption, derived from the observed project layout, suggests placement within `cmd/entire/cli/`. The existing `_test.go` files provide a good model. I'll need user input to determine the precise location and file naming convention. After I get the go-ahead, I'll remove the initial, incorrectly placed, test file.","type":"thinking"},{"text":"It seems I misunderstood and created a `test.go` file in the root directory. In Go projects, test files typically reside within the package they are testing and end with `_test.go`.\n\nBased on the project structure, I see existing tests in:\n- `cmd/entire/cli/` (unit tests)\n- `cmd/entire/cli/integration_test/` (integration tests)\n- `e2e/tests/` (end-to-end tests)\n\nCould you please clarify what kind of test you'd like to create (unit, integration, or E2E)? Once I know that, I can place the file in the correct location and suggest some initial content.\n\nI will remove the `test.go` file from the root directory first.","type":"text"},{"id":"run_shell_command-1773867961207-18a27a8fe3875","input":{"command":"rm test.go","description":"Remove the incorrectly created test.go file from the root directory."},"name":"run_shell_command","result":{"output":"Output: (empty)\nProcess Group PGID: 26712","status":"success"},"type":"tool_use"}]} +{"v":1,"agent":"gemini-cli","cli_version":"0.5.1","type":"assistant","ts":"2026-03-18T21:08:23.669Z","id":"8253d864-65d0-4b66-9d63-2948d8132b98","input_tokens":16867,"output_tokens":41,"content":[{"thinking":"Waiting on Testing Guidance\n\nI've taken the initial step by removing the `test.go` file from the root, as directed. My next move hinges on the user's input. I'm essentially on hold until I receive clarity about the specific testing requirements, which will then shape my subsequent actions.","type":"thinking"},{"text":"I have removed the `test.go` file. Please let me know if you'd like a unit, integration, or E2E test, and I can create it in the appropriate location.","type":"text"}]}