Issues

• pastis-mds function error

  hiclib/pastis#120 · Filter by author 304243504 opened on Aug 11, 2025
  1

• Diploid Genome

  hiclib/pastis#119 · Filter by author ziyi10 opened on Aug 7, 2025
  4

• pastis-mds model with HiC contact map input

  hiclib/pastis#109 · Filter by author beyzoskaya opened on Dec 3, 2024
  1

• How to convert .hic or cool format to .npy file?

  hiclib/pastis#107 · Filter by author hanshanmengqi opened on Aug 17, 2023
  4

• Diploid genome structure

  hiclib/pastis#106 · Filter by author jinlizhang200706 opened on Jul 10, 2023
  2

• New pip package?

  hiclib/pastis#105 · Filter by author pierrepo opened on Jan 17, 2023
  4

• is this tool still available?

  hiclib/pastis#104 · Filter by author PengfeiInTuebingen opened on Jan 3, 2023
  2

• How to choose one chromosome for construction ?

  hiclib/pastis#103 · Filter by author liufuyan2016 opened on Oct 31, 2022
  2

• I don't know how to use the "Pastis-NB" model

  hiclib/pastis#102 · Filter by author shenlinyong opened on Jul 11, 2022

• Is this still available?

  hiclib/pastis#97 · Filter by author biofcallejas opened on Dec 8, 2021
  1

• Can pastis reconstruct 3D model for the whole genome?

  hiclib/pastis#92 · Filter by author hzjsxu opened on May 7, 2021

• mapping between the HiC contact map and the 3D model

  hiclib/pastis#76 · Filter by author jazberna1 opened on Nov 13, 2020

• Error using: pip3.7 install pastis

  hiclib/pastis#71 · Filter by author yliueagle opened on May 28, 2020
  1

• Errored out with exit

  hiclib/pastis#68 · Filter by author b2jia opened on Feb 18, 2020
  2

• Does Pastis have a parameter for specifying nucleus size?

  hiclib/pastis#50 · Filter by author danextreme opened on Oct 15, 2019
  3

• Question about the output of example data

  hiclib/pastis#48 · Filter by author QianzhaoJ opened on Sep 29, 2018

• Pastis execution validation

  hiclib/pastis#46 · Filter by author oluwatosin-oluwadare opened on Jul 23, 2018

• Travis-ci does not actually install the package

  hiclib/pastis#42 · Filter by author NelleV opened on Jul 4, 2018

• Install/running problem- ./MDS.sh: 1: ./MDS.sh: MDS_all: not found

  hiclib/pastis#40 · Filter by author hanfu-bios opened on Jul 4, 2018
  9

• Viewing the PDB file

  hiclib/pastis#35 · Filter by author aakashsur opened on May 11, 2018
  1

• for HiC-3DViewer

  hiclib/pastis#34 · Filter by author rysterzhu opened on May 8, 2018
  1

• Annotation of pdb

  hiclib/pastis#18 · Filter by author robinweide opened on Feb 27, 2016
  1

• Return meaningfull errors when there are dimension problems in pm2

  hiclib/pastis#1 · Filter by author NelleV opened on May 15, 2014