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github_url:https://github.com/Project-MONAI/MONAI

Data

Generic Interfaces

.. currentmodule:: monai.data

Dataset

.. autoclass:: Dataset
  :members:
  :special-members: __getitem__

IterableDataset

.. autoclass:: IterableDataset
  :members:
  :special-members: __next__

DatasetFunc

.. autoclass:: DatasetFunc
  :members:
  :special-members: __next__

ShuffleBuffer

.. autoclass:: ShuffleBuffer
  :members:
  :special-members: __next__

CSVIterableDataset

.. autoclass:: CSVIterableDataset
  :members:
  :special-members: __next__

PersistentDataset

.. autoclass:: PersistentDataset
  :members:
  :special-members: __getitem__

GDSDataset

.. autoclass:: GDSDataset
  :members:
  :special-members: __getitem__

CacheNTransDataset

.. autoclass:: CacheNTransDataset
  :members:
  :special-members: __getitem__

LMDBDataset

.. autoclass:: LMDBDataset
  :members:
  :special-members: __getitem__

CacheDataset

.. autoclass:: CacheDataset
  :members:
  :special-members: __getitem__

SmartCacheDataset

.. autoclass:: SmartCacheDataset
  :members:
  :special-members: __getitem__

ZipDataset

.. autoclass:: ZipDataset
  :members:
  :special-members: __getitem__

ArrayDataset

.. autoclass:: ArrayDataset
  :members:
  :special-members: __getitem__

ImageDataset

.. autoclass:: ImageDataset
  :members:
  :special-members: __getitem__

NPZDictItemDataset

.. autoclass:: NPZDictItemDataset
  :members:
  :special-members: __getitem__

CSVDataset

.. autoclass:: CSVDataset
  :members:
  :special-members: __getitem__

Patch-based dataset

GridPatchDataset

.. autoclass:: GridPatchDataset
  :members:

PatchDataset

.. autoclass:: PatchDataset
  :members:
PatchIter
.. autoclass:: PatchIter
    :members:
    :special-members: __call__
PatchIterd
.. autoclass:: PatchIterd
    :members:
    :special-members: __call__

Image reader

ImageReader

.. autoclass:: ImageReader
  :members:

ITKReader

.. autoclass:: ITKReader
  :members:

NibabelReader

.. autoclass:: NibabelReader
  :members:

NumpyReader

.. autoclass:: NumpyReader
  :members:

PILReader

.. autoclass:: PILReader
  :members:

PydicomReader

.. autoclass:: PydicomReader
  :members:

NvImgCodecPydicomReader

GPU-accelerated DICOM reader built on :py:class:`PydicomReader` and the nvImageCodec pydicom decoder plugin. The to_gpu init argument is accepted for API compatibility but is always ignored so that GPU decompression is not bypassed by GPU direct loading. The optional dependency nvimgcodec needs to be installed for this feature (pip install 'monai[nvimgcodec]').

.. autoclass:: NvImgCodecPydicomReader
  :members:

NrrdReader

.. autoclass:: NrrdReader
  :members:

Image writer

resolve_writer

.. autofunction:: resolve_writer

register_writer

.. autofunction:: register_writer

ImageWriter

.. autoclass:: ImageWriter
  :members:

ITKWriter

.. autoclass:: ITKWriter
  :members:

NibabelWriter

.. autoclass:: NibabelWriter
  :members:

PILWriter

.. autoclass:: PILWriter
  :members:

Synthetic

.. automodule:: monai.data.synthetic
  :members:

Ouput folder layout

.. automodule:: monai.data.folder_layout
  :members:

Utilities

.. automodule:: monai.data.utils
  :members:

Partition Dataset

.. autofunction:: monai.data.partition_dataset

Partition Dataset based on classes

.. autofunction:: monai.data.partition_dataset_classes

DistributedSampler

.. autoclass:: monai.data.DistributedSampler

DistributedWeightedRandomSampler

.. autoclass:: monai.data.DistributedWeightedRandomSampler

DatasetSummary

.. autoclass:: monai.data.DatasetSummary

Decathlon Datalist

.. autofunction:: monai.data.load_decathlon_datalist

.. autofunction:: monai.data.load_decathlon_properties

.. autofunction:: monai.data.check_missing_files

.. autofunction:: monai.data.create_cross_validation_datalist

DataLoader

.. autoclass:: monai.data.DataLoader

ThreadBuffer

.. autoclass:: monai.data.ThreadBuffer

ThreadDataLoader

.. autoclass:: monai.data.ThreadDataLoader

TestTimeAugmentation

.. autoclass:: monai.data.TestTimeAugmentation

N-Dim Fourier Transform

.. automodule:: monai.data.fft_utils

.. autofunction:: monai.data.fft_utils.fftn_centered

.. autofunction:: monai.data.fft_utils.ifftn_centered

ITK Torch Bridge

.. automodule:: monai.data.itk_torch_bridge
  :members:

Meta Object

.. automodule:: monai.data.meta_obj
  :members:

MetaTensor

.. autoclass:: monai.data.MetaTensor
  :members:
  :show-inheritance:
  :inherited-members: MetaObj

Whole slide image reader

BaseWSIReader

.. autoclass:: monai.data.BaseWSIReader
  :members:

WSIReader

.. autoclass:: monai.data.WSIReader
  :members:

CuCIMWSIReader

.. autoclass:: monai.data.CuCIMWSIReader
  :members:

OpenSlideWSIReader

.. autoclass:: monai.data.OpenSlideWSIReader
  :members:

TiffFileWSIReader

.. autoclass:: monai.data.TiffFileWSIReader
  :members:

Whole slide image datasets

PatchWSIDataset

.. autoclass:: monai.data.PatchWSIDataset
    :members:

MaskedPatchWSIDataset

.. autoclass:: monai.data.MaskedPatchWSIDataset
    :members:

SlidingPatchWSIDataset

.. autoclass:: monai.data.SlidingPatchWSIDataset
    :members:

Bounding box

.. automodule:: monai.data.box_utils
    :members:

Video datasets

VideoDataset

.. autoclass:: monai.data.video_dataset.VideoDataset

VideoFileDataset

.. autoclass:: monai.data.video_dataset.VideoFileDataset

CameraDataset

.. autoclass:: monai.data.video_dataset.CameraDataset