Issues

• Dependency Dashboard

  seqeralabs/RustQC#174 · Filter by author seqeralabs-renovate opened on Sep 30, 2026

• Feature request: run a single tool from the command line

  seqeralabs/RustQC#173 · Filter by author adam-cornwell opened on Sep 24, 2026

• Tracking: protein (proteomics) QC subcommand PR series (#158, #159) and raw read QC (#160)

  seqeralabs/RustQC#163 · Filter by author BenjaminDEMAILLE opened on Aug 29, 2026

• Tracking: DNA QC subcommand PR series (#152, #153, #154, #155, #156)

  seqeralabs/RustQC#157 · Filter by author BenjaminDEMAILLE opened on Aug 28, 2026

• CRAM 3.1 seems unsupported

  seqeralabs/RustQC#151 · Filter by author lucacozzuto opened on Aug 27, 2026
  3

• Tracking: performance PR series (#137, #138, #139, #140) and reproducibility fix (#142)

  seqeralabs/RustQC#143 · Filter by author BenjaminDEMAILLE opened on Aug 14, 2026
  1

• Three outputs are not reproducible run-to-run (HashMap iteration order reaching output)

  seqeralabs/RustQC#141 · Filter by author BenjaminDEMAILLE opened on Aug 14, 2026

• Cargo.lock pins hts-sys 2.2.0 (bindgen 0.69), which fails to build against current LLVM

  seqeralabs/RustQC#129 · Filter by author BenjaminDEMAILLE opened on Aug 11, 2026
  2

• Feature request: support Qualimap bamqc mode (genomic BAM QC) in addition to rnaseq mode

  seqeralabs/RustQC#128 · Filter by author seqinfomics opened on Jul 28, 2026

• Feature request: implement RSeQC's geneBody_coverage.py and read_GC.py equivalents

  seqeralabs/RustQC#127 · Filter by author seqinfomics opened on Jul 28, 2026

• Malformed GTF (0 genes extracted) is misdiagnosed as a chromosome name mismatch

  seqeralabs/RustQC#126 · Filter by author seqinfomics opened on Jul 28, 2026

• samtools flagstat: reads with both SECONDARY and SUPPLEMENTARY flags are double-counted in the supplementary total

  seqeralabs/RustQC#125 · Filter by author seqinfomics opened on Jul 28, 2026

• Feature request: Generate coverage tracks

  seqeralabs/RustQC#112 · Filter by author ewels opened on Jun 16, 2026

• Feature request: RSeQC split_bam.py - BED-file approach to rRNA quantification

  enhancement
  seqeralabs/RustQC#111 · Filter by author rhassaine opened on Jun 12, 2026

• refactor: bundle process_chromosome_batch() parameters into config structs

  seqeralabs/RustQC#85 · Filter by author edmundmiller opened on Apr 8, 2026

• RustQC for nf-core/sarek: Single-Pass CRAM QC

  seqeralabs/RustQC#18 · Filter by author ewels opened on Feb 16, 2026