Merged
Conversation
Drop clustering-specific logic and align plot labels/styles with the main figure conventions so the static panel output is easier to interpret and maintain.
Reorganize the figure into distribution-focused middle rows, add a projection-target CCF panel, and unify spatial plotting with configurable edge coloring while keeping spatial axes visually consistent.
Add a normalized waveform overlay subplot for spinal cord, cortex, and cerebellum targets and update the panel layout while keeping downstream distribution and CCF panels aligned.
…oving code readability
…l script and clean up Dockerfile
…an_add_pca1_of_waveform
…adding to font manager
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
1 participant
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
Summary
fig_spike_pcainto a multi-row composite layout with waveform overlays, distribution views (violin/histogram/CDF), and three CCF-space panels.Notes
ipfx_taufrom seconds to milliseconds for display.src/LCNE_patchseq_analysis/figures/.