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feat: Add gbif data#2147

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cauriol wants to merge 4 commits intodevelopfrom
add_gbif
Open

feat: Add gbif data#2147
cauriol wants to merge 4 commits intodevelopfrom
add_gbif

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@cauriol
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@cauriol cauriol commented Apr 14, 2026

Adding Federate GBIF (Global Biodiversity Information Facility) data

@cauriol cauriol self-assigned this Apr 14, 2026
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eodag-bot commented Apr 14, 2026 •
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Code Coverage (Ubuntu)

Details 
Filename                                     Stmts    Miss  Cover    Missing
-----------------------------------------  -------  ------  -------  -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
__init__.py                                      8       0  100.00%
cli.py                                         251      11  95.62%   104-115, 377, 644
config.py                                      306      24  92.16%   70-72, 75, 78, 81, 85, 89, 93-95, 587-589, 711-713, 732, 740, 770-775, 777
crunch.py                                        2       0  100.00%
api/__init__.py                                  0       0  100.00%
api/collection.py                              151       8  94.70%   177, 213, 216, 323, 362, 365, 383, 386
api/core.py                                    778      57  92.67%   266, 552, 600, 643, 683, 703, 744-749, 774, 858-877, 891, 897, 1050, 1055, 1154, 1193-1194, 1290-1291, 1317, 1348-1349, 1375, 1388, 1449-1450, 1481-1482, 1556-1561, 1573-1576, 1688, 1921, 2078, 2189, 2277-2278
api/provider.py                                382      40  89.53%   186, 190-191, 316-337, 405, 521, 525-526, 531-534, 545, 621-631, 821-822, 870, 877, 891, 914-917, 951-958, 962-963
api/search_result.py                           138      12  91.30%   111, 123, 133, 154, 208, 266, 278, 413, 468-471
api/product/__init__.py                          7       0  100.00%
api/product/_assets.py                          54       4  92.59%   97, 191, 202-206
api/product/_product.py                        304      24  92.11%   200, 344, 370-373, 410, 421-422, 531, 560, 567, 606, 718, 761-764, 773-776, 830, 896, 908, 975
api/product/metadata_mapping.py                806      60  92.56%   125-127, 221-226, 250, 308-309, 355-356, 397, 418, 470-471, 508, 529-532, 555, 567-568, 609, 632, 657-660, 662-667, 732-737, 746, 752, 768, 776, 1010, 1163, 1185, 1194-1198, 1215-1220, 1353, 1376, 1385, 1407, 1412, 1464, 1536, 1557, 1583, 1597, 1622, 1668, 1737, 1812
api/product/drivers/__init__.py                 11       0  100.00%
api/product/drivers/base.py                     32       0  100.00%
api/product/drivers/generic.py                  11       0  100.00%
api/product/drivers/sentinel1.py                33       0  100.00%
api/product/drivers/sentinel2.py                33       0  100.00%
plugins/__init__.py                              0       0  100.00%
plugins/base.py                                 25       2  92.00%   48, 55
plugins/manager.py                             173      16  90.75%   102-107, 179, 201, 219-220, 232, 271-272, 372-375, 387-388
plugins/apis/__init__.py                         0       0  100.00%
plugins/apis/base.py                             4       0  100.00%
plugins/apis/ecmwf.py                           95       8  91.58%   163-165, 213-214, 240-242
plugins/apis/usgs.py                           182      25  86.26%   157, 263, 297, 339-341, 346, 374-375, 380, 410-417, 428-433, 455-461
plugins/authentication/__init__.py               6       1  83.33%   31
plugins/authentication/aws_auth.py             124      35  71.77%   52-54, 69-70, 142-149, 177-203, 226, 258-262, 279, 303, 319-320
plugins/authentication/base.py                  22       4  81.82%   45, 58, 81, 95
plugins/authentication/eoiam.py                 99       2  97.98%   171, 194
plugins/authentication/generic.py               16       3  81.25%   50, 55, 65
plugins/authentication/header.py                19       0  100.00%
plugins/authentication/keycloak.py              46       4  91.30%   154, 177-182
plugins/authentication/openid_connect.py       235      19  91.91%   98-99, 107-125, 172, 180, 194, 214, 353-356, 382, 423
plugins/authentication/qsauth.py                34       1  97.06%   91
plugins/authentication/sas_auth.py              57       3  94.74%   68, 89, 135
plugins/authentication/token.py                141       9  93.62%   192, 229, 309-310, 358-362
plugins/authentication/token_exchange.py        36      14  61.11%   75, 93-121
plugins/crunch/__init__.py                       6       0  100.00%
plugins/crunch/base.py                          12       0  100.00%
plugins/crunch/filter_date.py                   59       0  100.00%
plugins/crunch/filter_latest_intersect.py       54       6  88.89%   92-93, 100-101, 103-107
plugins/crunch/filter_latest_tpl_name.py        35       0  100.00%
plugins/crunch/filter_overlap.py                66      10  84.85%   118-121, 137-163
plugins/crunch/filter_property.py               30       0  100.00%
plugins/download/__init__.py                     4       0  100.00%
plugins/download/aws.py                        402      76  81.09%   271, 305, 354-357, 387-388, 396-400, 480-483, 523-525, 529, 560-561, 567-571, 602, 667-675, 739-834, 846-851, 889, 915, 960-962, 1014
plugins/download/base.py                       288      24  91.67%   135, 165, 371-372, 416, 450, 527-531, 561, 596-597, 622-631, 690, 711, 733, 741
plugins/download/http.py                       574      75  86.93%   233, 275-278, 340-343, 346, 353-358, 389-391, 408, 423, 483, 518, 532, 546, 556-560, 576-581, 592, 611, 648-651, 672, 682, 689, 745, 854, 886, 916-925, 961, 1006-1011, 1020, 1035-1037, 1041, 1044, 1059-1060, 1070, 1145, 1197, 1239-1240, 1252, 1262, 1318-1319, 1349, 1369, 1397, 1477-1478
plugins/search/__init__.py                      25       0  100.00%
plugins/search/base.py                         197      18  90.86%   109, 113, 137-143, 218-221, 296, 317, 443, 493, 526-529, 538
plugins/search/build_search_result.py          520      91  82.50%   260-261, 297, 301, 321, 380, 550-561, 571-573, 659-665, 711, 735, 737, 804, 812-816, 837, 847, 873, 918, 943, 971, 989-1004, 1054, 1079, 1082, 1086, 1095, 1101, 1139-1160, 1201, 1228-1229, 1238-1247, 1311, 1326, 1332, 1351-1360, 1481-1482, 1526, 1535-1537, 1594, 1642-1652
plugins/search/cop_ghsl.py                     407      85  79.12%   73-74, 109-110, 174, 176, 218, 249-252, 297, 313, 316, 350, 354-359, 374, 396, 417, 451, 467, 502, 517, 531-532, 546-548, 555, 559-561, 564-567, 585-645, 656-671
plugins/search/cop_marine.py                   273      59  78.39%   57, 65-67, 77-78, 83, 88-89, 105, 107, 110, 176-177, 220, 238, 244, 248, 252, 263, 274-275, 283, 315-318, 324, 334, 347, 351, 355, 359, 363-367, 373-376, 379-396, 413-416, 469-473, 478, 490, 504-505
plugins/search/creodias_s3.py                   29       1  96.55%   59
plugins/search/csw.py                          112      87  22.32%   99-100, 104-105, 113-170, 176-189, 197-229, 247-288
plugins/search/qssearch.py                     839      95  88.68%   380, 425-426, 543-544, 567-568, 580-584, 815-821, 879, 945, 975, 982, 1053, 1074, 1077-1078, 1096, 1105-1106, 1133, 1205, 1214, 1219-1236, 1245, 1260, 1269, 1282, 1304, 1400, 1423, 1496-1497, 1503, 1593, 1700-1704, 1775, 1778, 1782-1783, 1804-1807, 1819, 1841-1853, 1861, 1896-1898, 1921-1927, 1934, 1988, 2011, 2016-2017, 2032, 2038, 2048, 2138, 2142, 2153, 2177, 2190, 2198-2208, 2246-2250
plugins/search/stac_list_assets.py              25      10  60.00%   44-51, 75-85
plugins/search/static_stac_search.py            84      18  78.57%   99-127, 166-169, 182, 224
resources/__init__.py                            0       0  100.00%
resources/shp/__init__.py                        0       0  100.00%
types/__init__.py                              167      43  74.25%   58, 62, 71-75, 86-98, 126-128, 135-140, 216, 219, 257, 267-283, 288, 290, 312, 317, 325, 335
types/bbox.py                                   39      19  51.28%   46-61, 72-74, 85-87, 99-101, 113-115, 123
types/download_args.py                          10       0  100.00%
types/queryables.py                            112       0  100.00%
types/search_args.py                            70      18  74.29%   60-64, 71-88, 103
types/stac_extensions.py                       114       1  99.12%   282
types/stac_metadata.py                         120      16  86.67%   95, 116-117, 150, 180-194, 203-210
utils/__init__.py                              572      39  93.18%   60, 197, 228-229, 238-264, 267, 282, 362-366, 441-445, 525, 565-566, 595, 973-976, 1027, 1046-1047, 1076, 1094-1095, 1207, 1295, 1459, 1697
utils/cache.py                                  22       0  100.00%
utils/dates.py                                 182       4  97.80%   172, 516, 523-524
utils/deserialize.py                            73      10  86.30%   53, 55, 103, 108-109, 145, 159, 181-182, 188
utils/env.py                                     3       0  100.00%
utils/exceptions.py                             47       0  100.00%
utils/free_text_search.py                       65       2  96.92%   83, 91
utils/import_system.py                          28      19  32.14%   64-78, 89-99
utils/logging.py                                31       1  96.77%   41
utils/notebook.py                               44      23  47.73%   25-29, 36-41, 58-62, 72-78, 83-87
utils/repr.py                                   38       0  100.00%
utils/requests.py                               55      29  47.27%   51-52, 64, 85-96, 107-124, 128
utils/s3.py                                    240      12  95.00%   200-203, 245, 263, 489, 537-538, 585, 660, 686
utils/stac_reader.py                           113      44  61.06%   63-85, 95-97, 101, 138, 154-159, 206-216, 226-256
utils/streamresponse.py                         82       7  91.46%   24-26, 63, 124, 133, 145
TOTAL                                        10889    1328  87.80%

Diff against develop

Filename      Stmts    Miss  Cover
----------  -------  ------  --------
TOTAL             0       0  +100.00%

Results for commit: 02d6664

Minimum allowed coverage is 70%

♻️ This comment has been updated with latest results

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eodag-bot commented Apr 14, 2026 •
edited
Loading

badge

Code Coverage (Windows)

Details 
Filename                                     Stmts    Miss  Cover    Missing
-----------------------------------------  -------  ------  -------  -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
__init__.py                                      8       0  100.00%
cli.py                                         251      11  95.62%   104-115, 377, 644
config.py                                      306      24  92.16%   70-72, 75, 78, 81, 85, 89, 93-95, 587-589, 711-713, 732, 740, 770-775, 777
crunch.py                                        2       0  100.00%
api/__init__.py                                  0       0  100.00%
api/collection.py                              151       8  94.70%   177, 213, 216, 323, 362, 365, 383, 386
api/core.py                                    778      57  92.67%   266, 552, 600, 643, 683, 703, 744-749, 774, 858-877, 891, 897, 1050, 1055, 1154, 1193-1194, 1290-1291, 1317, 1348-1349, 1375, 1388, 1449-1450, 1481-1482, 1556-1561, 1573-1576, 1688, 1921, 2078, 2189, 2277-2278
api/provider.py                                382      40  89.53%   186, 190-191, 316-337, 405, 521, 525-526, 531-534, 545, 621-631, 821-822, 870, 877, 891, 914-917, 951-958, 962-963
api/search_result.py                           138      12  91.30%   111, 123, 133, 154, 208, 266, 278, 413, 468-471
api/product/__init__.py                          7       0  100.00%
api/product/_assets.py                          54       4  92.59%   97, 191, 202-206
api/product/_product.py                        304      24  92.11%   200, 344, 370-373, 410, 421-422, 531, 560, 567, 606, 718, 761-764, 773-776, 830, 896, 908, 975
api/product/metadata_mapping.py                806      60  92.56%   125-127, 221-226, 250, 308-309, 355-356, 397, 418, 470-471, 508, 529-532, 555, 567-568, 609, 632, 657-660, 662-667, 732-737, 746, 752, 768, 776, 1010, 1163, 1185, 1194-1198, 1215-1220, 1353, 1376, 1385, 1407, 1412, 1464, 1536, 1557, 1583, 1597, 1622, 1668, 1737, 1812
api/product/drivers/__init__.py                 11       0  100.00%
api/product/drivers/base.py                     32       0  100.00%
api/product/drivers/generic.py                  11       0  100.00%
api/product/drivers/sentinel1.py                33       0  100.00%
api/product/drivers/sentinel2.py                33       0  100.00%
plugins/__init__.py                              0       0  100.00%
plugins/base.py                                 25       2  92.00%   48, 55
plugins/manager.py                             173      16  90.75%   102-107, 179, 201, 219-220, 232, 271-272, 372-375, 387-388
plugins/apis/__init__.py                         0       0  100.00%
plugins/apis/base.py                             4       0  100.00%
plugins/apis/ecmwf.py                           95       8  91.58%   163-165, 213-214, 240-242
plugins/apis/usgs.py                           182      25  86.26%   157, 263, 297, 339-341, 346, 374-375, 380, 410-417, 428-433, 455-461
plugins/authentication/__init__.py               6       1  83.33%   31
plugins/authentication/aws_auth.py             124      35  71.77%   52-54, 69-70, 142-149, 177-203, 226, 258-262, 279, 303, 319-320
plugins/authentication/base.py                  22       4  81.82%   45, 58, 81, 95
plugins/authentication/eoiam.py                 99       2  97.98%   171, 194
plugins/authentication/generic.py               16       3  81.25%   50, 55, 65
plugins/authentication/header.py                19       0  100.00%
plugins/authentication/keycloak.py              46       4  91.30%   154, 177-182
plugins/authentication/openid_connect.py       235      19  91.91%   98-99, 107-125, 172, 180, 194, 214, 353-356, 382, 423
plugins/authentication/qsauth.py                34       1  97.06%   91
plugins/authentication/sas_auth.py              57       3  94.74%   68, 89, 135
plugins/authentication/token.py                141       9  93.62%   192, 229, 309-310, 358-362
plugins/authentication/token_exchange.py        36      14  61.11%   75, 93-121
plugins/crunch/__init__.py                       6       0  100.00%
plugins/crunch/base.py                          12       0  100.00%
plugins/crunch/filter_date.py                   59       0  100.00%
plugins/crunch/filter_latest_intersect.py       54       6  88.89%   92-93, 100-101, 103-107
plugins/crunch/filter_latest_tpl_name.py        35       0  100.00%
plugins/crunch/filter_overlap.py                66      10  84.85%   118-121, 137-163
plugins/crunch/filter_property.py               30       0  100.00%
plugins/download/__init__.py                     4       0  100.00%
plugins/download/aws.py                        402      76  81.09%   271, 305, 354-357, 387-388, 396-400, 480-483, 523-525, 529, 560-561, 567-571, 602, 667-675, 739-834, 846-851, 889, 915, 960-962, 1014
plugins/download/base.py                       288      26  90.97%   135, 165, 232-234, 371-372, 416, 450, 527-531, 561, 596-597, 622-631, 690, 711, 733, 741
plugins/download/http.py                       574      75  86.93%   233, 275-278, 340-343, 346, 353-358, 389-391, 408, 423, 483, 518, 532, 546, 556-560, 576-581, 592, 611, 648-651, 672, 682, 689, 745, 854, 886, 916-925, 961, 1006-1011, 1020, 1035-1037, 1041, 1044, 1059-1060, 1070, 1145, 1197, 1239-1240, 1252, 1262, 1318-1319, 1349, 1369, 1397, 1477-1478
plugins/search/__init__.py                      25       0  100.00%
plugins/search/base.py                         197      18  90.86%   109, 113, 137-143, 218-221, 296, 317, 443, 493, 526-529, 538
plugins/search/build_search_result.py          520      91  82.50%   260-261, 297, 301, 321, 380, 550-561, 571-573, 659-665, 711, 735, 737, 804, 812-816, 837, 847, 873, 918, 943, 971, 989-1004, 1054, 1079, 1082, 1086, 1095, 1101, 1139-1160, 1201, 1228-1229, 1238-1247, 1311, 1326, 1332, 1351-1360, 1481-1482, 1526, 1535-1537, 1594, 1642-1652
plugins/search/cop_ghsl.py                     407      85  79.12%   73-74, 109-110, 174, 176, 218, 249-252, 297, 313, 316, 350, 354-359, 374, 396, 417, 451, 467, 502, 517, 531-532, 546-548, 555, 559-561, 564-567, 585-645, 656-671
plugins/search/cop_marine.py                   273      59  78.39%   57, 65-67, 77-78, 83, 88-89, 105, 107, 110, 176-177, 220, 238, 244, 248, 252, 263, 274-275, 283, 315-318, 324, 334, 347, 351, 355, 359, 363-367, 373-376, 379-396, 413-416, 469-473, 478, 490, 504-505
plugins/search/creodias_s3.py                   29       1  96.55%   59
plugins/search/csw.py                          112      87  22.32%   99-100, 104-105, 113-170, 176-189, 197-229, 247-288
plugins/search/qssearch.py                     839      95  88.68%   380, 425-426, 543-544, 567-568, 580-584, 815-821, 879, 945, 975, 982, 1053, 1074, 1077-1078, 1096, 1105-1106, 1133, 1205, 1214, 1219-1236, 1245, 1260, 1269, 1282, 1304, 1400, 1423, 1496-1497, 1503, 1593, 1700-1704, 1775, 1778, 1782-1783, 1804-1807, 1819, 1841-1853, 1861, 1896-1898, 1921-1927, 1934, 1988, 2011, 2016-2017, 2032, 2038, 2048, 2138, 2142, 2153, 2177, 2190, 2198-2208, 2246-2250
plugins/search/stac_list_assets.py              25      10  60.00%   44-51, 75-85
plugins/search/static_stac_search.py            84      18  78.57%   99-127, 166-169, 182, 224
resources/__init__.py                            0       0  100.00%
resources/shp/__init__.py                        0       0  100.00%
types/__init__.py                              167      43  74.25%   58, 62, 71-75, 86-98, 126-128, 135-140, 216, 219, 257, 267-283, 288, 290, 312, 317, 325, 335
types/bbox.py                                   39      19  51.28%   46-61, 72-74, 85-87, 99-101, 113-115, 123
types/download_args.py                          10       0  100.00%
types/queryables.py                            112       0  100.00%
types/search_args.py                            70      18  74.29%   60-64, 71-88, 103
types/stac_extensions.py                       114       1  99.12%   282
types/stac_metadata.py                         120      16  86.67%   95, 116-117, 150, 180-194, 203-210
utils/__init__.py                              572      39  93.18%   60, 197, 228-229, 238-264, 267, 282, 362-366, 441-445, 525, 565-566, 595, 973-976, 1027, 1046-1047, 1076, 1094-1095, 1207, 1295, 1459, 1697
utils/cache.py                                  22       0  100.00%
utils/dates.py                                 182       4  97.80%   172, 516, 523-524
utils/deserialize.py                            73      10  86.30%   53, 55, 103, 108-109, 145, 159, 181-182, 188
utils/env.py                                     3       0  100.00%
utils/exceptions.py                             47       0  100.00%
utils/free_text_search.py                       65       2  96.92%   83, 91
utils/import_system.py                          28      19  32.14%   64-78, 89-99
utils/logging.py                                31       1  96.77%   41
utils/notebook.py                               44      23  47.73%   25-29, 36-41, 58-62, 72-78, 83-87
utils/repr.py                                   38       0  100.00%
utils/requests.py                               55      29  47.27%   51-52, 64, 85-96, 107-124, 128
utils/s3.py                                    240      12  95.00%   200-203, 245, 263, 489, 537-538, 585, 660, 686
utils/stac_reader.py                           113      44  61.06%   63-85, 95-97, 101, 138, 154-159, 206-216, 226-256
utils/streamresponse.py                         82       7  91.46%   24-26, 63, 124, 133, 145
TOTAL                                        10889    1330  87.79%

Diff against develop

Filename      Stmts    Miss  Cover
----------  -------  ------  --------
TOTAL             0       0  +100.00%

Results for commit: 02d6664

Minimum allowed coverage is 70%

♻️ This comment has been updated with latest results

@cauriol cauriol changed the title Add gbif feat: Add gbif data Apr 14, 2026
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github-actions Bot commented Apr 14, 2026 •
edited
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Test Results

    4 files  ±0      4 suites  ±0   3m 45s ⏱️ +8s
  750 tests ±0    750 ✅ ±0  0 💤 ±0  0 ❌ ±0 
3 042 runs  ±0  3 040 ✅ ±0  2 💤 ±0  0 ❌ ±0 

Results for commit 02d6664. ± Comparison against base commit 56f1292.

♻️ This comment has been updated with latest results.

@cauriol cauriol marked this pull request as ready for review April 14, 2026 08:37
@cauriol cauriol requested a review from jlahovnik April 14, 2026 08:37
jlahovnik
jlahovnik requested changes Apr 14, 2026
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Comment thread eodag/resources/providers.yml Outdated
NAIP:
_collection: naip
GBIF_OCCURRENCE:
_collection: EO.GBIF.DAT.OCCURRENCE
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the collection is called gbif on planetary_computer

@cauriol cauriol requested a review from jlahovnik April 14, 2026 12:25
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