Snakemake for sprite-pipeline

For detailed documentation of all the steps performed within the Snakemake please refer to: https://github.com/GuttmanLab/sprite-pipeline/wiki

Name		Name	Last commit message	Last commit date
Latest commit History 30 Commits
envs		envs
images		images
scripts		scripts
LICENSE.md		LICENSE.md
README.md		README.md
Snakefile		Snakefile
cluster.yaml		cluster.yaml
config.yaml		config.yaml
dpm96.fasta		dpm96.fasta
example_config.txt		example_config.txt
example_samples.json		example_samples.json
fastq2json.py		fastq2json.py
hg38_blacklist_rmsk.milliDivLessThan140.bed.gz		hg38_blacklist_rmsk.milliDivLessThan140.bed.gz
mm10_blacklist_rmsk.milliDivLessThan140.bed.gz		mm10_blacklist_rmsk.milliDivLessThan140.bed.gz
run_pipeline.sh		run_pipeline.sh
run_pipeline_local.sh		run_pipeline_local.sh

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