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collect general bioinfor scripts presented as funcitons which can be treated as modules,and you can join your pipeline with these modules freely

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Linux/sed
Linux/sed
 
 
01_get_idr_v3.py
01_get_idr_v3.py
 
 
01_get_idrs.py
01_get_idrs.py
 
 
01_get_idrs_v2.py
01_get_idrs_v2.py
 
 
01_parse_protein_fasta_sequence.py
01_parse_protein_fasta_sequence.py
 
 
02_make_dataset.py
02_make_dataset.py
 
 
02_make_dataset_v2.py
02_make_dataset_v2.py
 
 
02_match_regular_expression_OR_pattern_in_fasta_sequence.py
02_match_regular_expression_OR_pattern_in_fasta_sequence.py
 
 
03_bootstrap_to_get_confidence_interval.py
03_bootstrap_to_get_confidence_interval.py
 
 
04_random_sequence_generator.py
04_random_sequence_generator.py
 
 
05_Largest_Common_Prefix.py
05_Largest_Common_Prefix.py
 
 
06_download_fq_and_qc.py
06_download_fq_and_qc.py
 
 
07_add_to_environment_var.sh
07_add_to_environment_var.sh
 
 
08_calc_shannon_entropy.py
08_calc_shannon_entropy.py
 
 
09_signal_Discretization.py
09_signal_Discretization.py
 
 
10_Boundary_filling_OR_sequence_interpolation.py
10_Boundary_filling_OR_sequence_interpolation.py
 
 
11_Categorical_HMM.py
11_Categorical_HMM.py
 
 
12_get_Linux_file_prefix.sh
12_get_Linux_file_prefix.sh
 
 
13_sort_in_numerical_way_in_shell_OR_Python_R
13_sort_in_numerical_way_in_shell_OR_Python_R
 
 
14_Argparse_Python_commandline_tool.py
14_Argparse_Python_commandline_tool.py
 
 
15_Convert_csv_to_fasta.py
15_Convert_csv_to_fasta.py
 
 
16_Extract_IDR_for_protein_fasta.py
16_Extract_IDR_for_protein_fasta.py
 
 
17_Make_Feature_dataset_with_OR_without_label.py
17_Make_Feature_dataset_with_OR_without_label.py
 
 
18_Calculate_aa_Sequence_Feature_from_localCIDER.py
18_Calculate_aa_Sequence_Feature_from_localCIDER.py
 
 
19_Protein_seq_to_charge_numeric.py
19_Protein_seq_to_charge_numeric.py
 
 
20_Max_subarray_with_indices.py
20_Max_subarray_with_indices.py
 
 
21_Min_Max_subarray_with_indices.py
21_Min_Max_subarray_with_indices.py
 
 
22_Min_Max_Protein_Charge_subarray_with_indices.py
22_Min_Max_Protein_Charge_subarray_with_indices.py
 
 
23_calc_Gini_index.py
23_calc_Gini_index.py
 
 
24_Merge_Certain_Colseq_to_fasta.py
24_Merge_Certain_Colseq_to_fasta.py
 
 
25_Expand_Certain_Colseq_to_MultiRows.py
25_Expand_Certain_Colseq_to_MultiRows.py
 
 
26_get_Python_file_prefix.py
26_get_Python_file_prefix.py
 
 
27_calc_Protein_seq_distance.py
27_calc_Protein_seq_distance.py
 
 
28_Reload_modules_safely.py
28_Reload_modules_safely.py
 
 
29_Pymol_label_and_video.py
29_Pymol_label_and_video.py
 
 
30_Plot_Corr_heatmap_From_Matrix.py
30_Plot_Corr_heatmap_From_Matrix.py
 
 
31_MP_PCA.py
31_MP_PCA.py
 
 
32_Create_project_structure.py
32_Create_project_structure.py
 
 
33_Time_Series_decompose.py
33_Time_Series_decompose.py
 
 
34_Distance_Metrics.py
34_Distance_Metrics.py
 
 
35_Charge_Block.py
35_Charge_Block.py
 
 
36_Continuous_Reduced_character_pattern.py
36_Continuous_Reduced_character_pattern.py
 
 
37_get_IDR_Region.py
37_get_IDR_Region.py
 
 
38_Library_Doc_interface.py
38_Library_Doc_interface.py
 
 
39_Protein_Sequence_feature.py
39_Protein_Sequence_feature.py
 
 
40_get_UniProt_protein_fasta.py
40_get_UniProt_protein_fasta.py
 
 
41_Get_Protein_Annotation.py
41_Get_Protein_Annotation.py
 
 
42_Get_Region_Intersection.py
42_Get_Region_Intersection.py
 
 
43_Transition_Counts.py
43_Transition_Counts.py
 
 
44_Reduce_Pattern.py
44_Reduce_Pattern.py
 
 
45_get_Kmer_counts.py
45_get_Kmer_counts.py
 
 
46_get_aa_freq.py
46_get_aa_freq.py
 
 
47_Recursive_flatten_dict_to_features.py
47_Recursive_flatten_dict_to_features.py
 
 
48_get_Jaspar_motif_data.py
48_get_Jaspar_motif_data.py
 
 
49_Pandas_Df2Dict.py
49_Pandas_Df2Dict.py
 
 
50_Cal_Protein_Res_dist.py
50_Cal_Protein_Res_dist.py
 
 
51_Flatten_Multi_Dim_array.py
51_Flatten_Multi_Dim_array.py
 
 
52_Plot_Local_Confid.py
52_Plot_Local_Confid.py
 
 
53_Extract_Sub_Matrix.py
53_Extract_Sub_Matrix.py
 
 
54_AlphaFold3_Confidence_Metrics_plot.py
54_AlphaFold3_Confidence_Metrics_plot.py
 
 
55_AlphaFold3_Color_pLDDT.py
55_AlphaFold3_Color_pLDDT.py
 
 
56_Structure_Contact_Map_Comparison.py
56_Structure_Contact_Map_Comparison.py
 
 
57_Remote_Add_your_project_into_GithubRepo.py
57_Remote_Add_your_project_into_GithubRepo.py
 
 
58_Library_Inspector.py
58_Library_Inspector.py
 
 
59_Library_Navigator.py
59_Library_Navigator.py
 
 
60_Function_Inspector.py
60_Function_Inspector.py
 
 
61_Publish_your_package_release_to_Github.py
61_Publish_your_package_release_to_Github.py
 
 
62_Get_PDB_mmCIF_Residue_Name.py
62_Get_PDB_mmCIF_Residue_Name.py
 
 
63_Parse_bed_to_track_data.py
63_Parse_bed_to_track_data.py
 
 
64_Structure_Contact_Map_Vis.py
64_Structure_Contact_Map_Vis.py
 
 
README.md
README.md
 
 
color_contrast.md
color_contrast.md
 
 
dc_batch.py
dc_batch.py
 
 
dc_batch_v2.py
dc_batch_v2.py
 
 

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bioinfor_script_modules

collect general bioinfor scripts presented as funcitons which can be treated as modules,and you can join your pipeline with these modules freely

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collect general bioinfor scripts presented as funcitons which can be treated as modules,and you can join your pipeline with these modules freely

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