Issues

• Archive repo?

  NationalGenomicsInfrastructure/piper#89 · Filter by author maxulysse opened on May 27, 2026
  4

• Ordering error in setup file creation

  bug
  NationalGenomicsInfrastructure/piper#64 · Filter by author johandahlberg opened on May 13, 2015

• Not enough memory, better way to determine Xmx value

  enhancementhelp wanted
  NationalGenomicsInfrastructure/piper#63 · Filter by author biocyberman opened on Mar 14, 2015
  5

• Generate snpEff html

  NationalGenomicsInfrastructure/piper#61 · Filter by author parlundin opened on Mar 12, 2015

• SnpEff ends up in wrong place in dependency graph for exome runs

  bug
  NationalGenomicsInfrastructure/piper#60 · Filter by author johandahlberg opened on Mar 10, 2015

• Maybe a bug: Qualimap step does not detect failure

  bug
  NationalGenomicsInfrastructure/piper#58 · Filter by author biocyberman opened on Feb 26, 2015
  1

• Incorrect paths for index and reference files when running RNAcounts workflow

  bug
  NationalGenomicsInfrastructure/piper#57 · Filter by author jessieno opened on Feb 24, 2015

• Coverage not correct

  bug
  NationalGenomicsInfrastructure/piper#49 · Filter by author parlundin opened on Feb 6, 2015
  3

• Some questions before adoption of piper

  question
  NationalGenomicsInfrastructure/piper#45 · Filter by author biocyberman opened on Dec 31, 2014
  3

• Just one sample in delivery folder when running multiple samples

  bug
  NationalGenomicsInfrastructure/piper#40 · Filter by author parlundin opened on Nov 17, 2014
  3

• .done file generated but its not done

  bug
  NationalGenomicsInfrastructure/piper#38 · Filter by author parlundin opened on Nov 14, 2014
  4

• Haloplex script needs update to new way of fetching resources

  enhancement
  NationalGenomicsInfrastructure/piper#32 · Filter by author johandahlberg opened on Sep 5, 2014

• FastQC added into Piper

  enhancement
  NationalGenomicsInfrastructure/piper#29 · Filter by author johandahlberg opened on Aug 19, 2014
  2

• Fall back to copying instead of hard linking

  enhancement
  NationalGenomicsInfrastructure/piper#24 · Filter by author johandahlberg opened on Aug 11, 2014