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Improve benchmark result normalization and generic reporting - #1

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nej1gotnochill wants to merge 32 commits into

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feat/openswath-normalization-and-cleanup

Commits on Aug 26, 2026
- Add OpenSwath DIA benchmark prototype
  nej1gotnochill
  committed
  a012f3a
- Add OpenSwath benchmark to CI workflow
  nej1gotnochill
  committed
  1c989cb
Commits on Aug 27, 2026
- Add v2 schema support with backward compatibility
  nej1gotnochill
  committed
  5a75f90
Commits on Aug 28, 2026
- Refactor renderer to be benchmark-agnostic using v2 schema fields
  nej1gotnochill
  committed
  2ce846e
Commits on Aug 29, 2026
- Fix comparison table regression: include stage/build metrics
  nej1gotnochill
  committed
  8257a8e
Commits on Sep 1, 2026
- Add minimal benchmark definition files
  nej1gotnochill
  committed
  aeec86d
Commits on Sep 3, 2026
- Improve benchmark result normalization and generic reporting
  nej1gotnochill
  committed
  e152150
Commits on Sep 4, 2026
- Harden OpenSwath normalization and CI artifact sizing
  nej1gotnochill
  committed
  7f75a31
Commits on Sep 6, 2026
- Add ProSE + PeptDeep entrapment benchmark runner (fixture-driven)
  nej1gotnochill
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  1396b56
Commits on Sep 13, 2026
- Add entrapment dataset generation and fix ProSE runner CLI/verdict handling
  nej1gotnochill
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  c6fb3d9
- Add ONNX CI job for ProSE PeptDeep benchmark
  nej1gotnochill
  committed
  2ff3ced
- Fix ONNX Runtime CMake discovery in CI
  nej1gotnochill
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  f90be97
- Fix XercesC dependency in CI
  nej1gotnochill
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  52e31ac
- Fix OpenMS runtime libraries in ONNX benchmark artifact
  nej1gotnochill
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  7905ece
- Fix OpenMS shared data path in ONNX benchmark
  nej1gotnochill
  committed
  e2dd254
Commits on Sep 14, 2026
- Add PXD028735 Phase-2 input preparation (HYE target + SoCe entrapment)
  nej1gotnochill
  committed
  3823b7c
Commits on Sep 16, 2026
- Add PXD028735 ProSE benchmark CI job
  nej1gotnochill
  committed
  849fbbe
Commits on Sep 17, 2026
- Add ProteoBench external comparison tool
  nej1gotnochill
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  ee6ea00
Commits on Sep 18, 2026
- Update README to document current benchmarking workflows
  nej1gotnochill
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  6fe9480
- Remove private project-documentation link from Resources
  nej1gotnochill
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  827e99c
Commits on Sep 19, 2026
- Add OpenSwath results to benchmark reporting
  nej1gotnochill
  committed
  fd32b9b
Commits on Sep 20, 2026
- Add real OpenSwath comparison baseline
  nej1gotnochill
  committed
  a34fdbe
- Add post-vcpkg build compatibility to benchmark workflow
  nej1gotnochill
  committed
  7850ce2
- Fix vcpkg runtime libraries in benchmark artifacts
  nej1gotnochill
  committed
  a22af79
Commits on Sep 22, 2026
Commits on Sep 23, 2026
- Automate normalize metadata in CI and SHA-ancestor baseline selection
  nej1gotnochill
  committed
  8f291ce
Commits on Sep 25, 2026
- Merge remote-tracking branch 'origin/main' into feat/openswath-normalization-and-cleanup
  nej1gotnochill
  committed
  3e63055
Commits on Sep 26, 2026
- Render CI report against stored benchmark history
  aliviahossain
  committed
  6fe837c

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Commits on Sep 26, 2026