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Bioc resub#85

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sgosline wants to merge 17 commits intomainfrom
bioc-resub
Open

Bioc resub#85
sgosline wants to merge 17 commits intomainfrom
bioc-resub

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Added the required feature requested by #82.

sgosline and others added 17 commits March 10, 2026 14:34
…_diff_ex.R` such differential expression results and SPE gene list are in the same order for merging. Also clarified comment in code explaining why we don't sort.
…og transformation only happens for non count based data
…nt analysis after fixes to calc_spatial_diff_ex.R
Imputation value writing was handled row by row in the proteomics data, which was incompatible with how Sample Minimum imputation data is calculated. Fixed imputed value assignment method for SampMin to fix that problem.
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@ymahlich ymahlich left a comment

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I added comments / have questions regarding two files. Nothing major just clarification.
Everything else looks good as far as I can tell.

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I am unclear on the ##herr er hry yhr comment in line 5 but otherwise this looks good

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hah probably a typo

Comment thread R/zzz.R
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3 participants