Issues

• Middle base difference

  RagnarGrootKoerkamp/sassy#80 · Filter by author kokyriakidis opened on Aug 12, 2026
  1

• Optimize Iupac::encode_ref on NEON (~20% of IUPAC search time)

  RagnarGrootKoerkamp/sassy#71 · Filter by author nh13 opened on Jul 11, 2026
  1

• Thoughts on direct BAM support?

  RagnarGrootKoerkamp/sassy#62 · Filter by author zeqianli opened on Jun 5, 2026
  2

• Alignments without any indels

  RagnarGrootKoerkamp/sassy#58 · Filter by author vkkodali opened on Apr 20, 2026
  4

• crispr subcommand: use multi-pattern search (v2/search_encoded_patterns) for multi-guide inputs

  RagnarGrootKoerkamp/sassy#52 · Filter by author nh13 opened on Mar 24, 2026
  2

• Benchmark vs bwa aln

  RagnarGrootKoerkamp/sassy#32 · Filter by author RagnarGrootKoerkamp opened on Aug 22, 2025
  4

• Static banding for tracing long queries

  RagnarGrootKoerkamp/sassy#23 · Filter by author RagnarGrootKoerkamp opened on May 5, 2025

• Compare different SIMD tiling methods

  RagnarGrootKoerkamp/sassy#22 · Filter by author RagnarGrootKoerkamp opened on May 5, 2025

• More efficient handling of long queries

  RagnarGrootKoerkamp/sassy#18 · Filter by author RagnarGrootKoerkamp opened on May 2, 2025

• Support binseq format

  RagnarGrootKoerkamp/sassy#17 · Filter by author RagnarGrootKoerkamp opened on May 2, 2025

• Faster threshold check

  RagnarGrootKoerkamp/sassy#11 · Filter by author RagnarGrootKoerkamp opened on Apr 29, 2025

• Comparison with other tools

  RagnarGrootKoerkamp/sassy#3 · Filter by author RagnarGrootKoerkamp opened on Apr 29, 2025
  1