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@ViennaRNA

ViennaRNA

Software and Documents from the Theoretical Biochemistry Institute, University of Vienna

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  1. ViennaRNA ViennaRNA Public

    The ViennaRNA Package

    C 379 88

  2. forna forna Public

    Create force-directed graphs of RNA secondary structures.

    JavaScript 110 34

  3. forgi forgi Public

    An RNA manipulation library.

    Python 56 33

  4. RNAcode RNAcode Public

    RNAcode - Detecting protein coding genes in multiple sequence alignment

    C 25 7

  5. fornac fornac Public

    A container for the forna visualization software.

    JavaScript 21 14

  6. RNAsketch RNAsketch Public

    Python wrapper to design RNA molecules using RNAblueprint, RNARedPrint and for energy evaluations ViennaRNA, Hotknots, pKiss and Nupack.

    Python 21 3

Repositories

Showing 10 of 42 repositories
  • ViennaRNA Public

    The ViennaRNA Package

    ViennaRNA/ViennaRNA’s past year of commit activity
    C 379 88 44 5 Updated Dec 29, 2025
  • ViennaRNA-Tutorial Public

    Tutorial for ViennaRNA/RNAlib usage

    ViennaRNA/ViennaRNA-Tutorial’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Dec 10, 2025
  • VEEnext Public

    Nextstrain community build 'Molecular epidemiology of Venezuelan equine encephalitis complex viruses'

    ViennaRNA/VEEnext’s past year of commit activity
    1 1 0 0 Updated Nov 10, 2025
  • CHIKV Public

    Nextstrain community build 'Molecular epidemiology of Chikungunya virus'

    ViennaRNA/CHIKV’s past year of commit activity
    3 1 0 0 Updated Nov 10, 2025
  • crosslinking Public
    ViennaRNA/crosslinking’s past year of commit activity
    Jupyter Notebook 1 0 0 0 Updated Oct 22, 2025
  • ViennaRNA/LinuxCommandLineTutorial’s past year of commit activity
    TeX 0 0 0 0 Updated Oct 2, 2025
  • sd-workshop-dubice2025 Public

    Sustainable Software Development - Workshop

    ViennaRNA/sd-workshop-dubice2025’s past year of commit activity
    C 1 MIT 0 0 0 Updated Sep 29, 2025
  • drtransformer Public Forked from bad-ants-fleet/drtransformer

    Heuristic cotranscriptional folding using the nearest neighbor energy model.

    ViennaRNA/drtransformer’s past year of commit activity
    Python 5 MIT 5 1 0 Updated Jun 3, 2025
  • VIECPLX Public
    ViennaRNA/VIECPLX’s past year of commit activity
    C++ 1 0 0 0 Updated Mar 6, 2025
  • negseeddesign Public
    ViennaRNA/negseeddesign’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Oct 28, 2024