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Problems in importing the api after PyPI installation #133
Description
Hello epiScanpy team,
First of all thanks for the great library!
I've just downloaded locally episcanpy with PyPI
pip install episcanpy
and I tried to import in a jupyter notebook
import episcanpy.api as epiBut I get the error:
ImportError Traceback (most recent call last)
Untitled-1.ipynb Cell 4 in <cell line: 5>()
[3] import numpy as np
[4] import pandas as pd
----> [5] import episcanpy.api as epi
File ~/my/path/to/python3.8/episcanpy/api/__init__.py:11, in <module>
9 from . import tl
10 from . import ct
---> 11 from . import pl
13 from typing import Any, Union, Optional, Iterable, TextIO
14 from typing import Tuple, List, ContextManager
File ~/my/path/to/python3.8/episcanpy/api/pl.py:20, in <module>
18 from ..preprocessing._quality_control import cal_var, variability_features
19 from ..preprocessing._tss_enrichment import tss_enrichment_plot as tss_enrichment
---> 20 from ..preprocessing._tss_enrichment import tss_enrichment_score_plot as tss_enrichment_socre
ImportError: cannot import name 'tss_enrichment_score_plot' from 'episcanpy.preprocessing._tss_enrichment' (/home/my/path/to/python3.8/episcanpy/preprocessing/_tss_enrichment.py)and as you can see in line 20 of the file pl.py there is a typo "tss_enrichment_SOCRE" instead of "tss_enrichment_score" I guess.
I thought this would fix the ImportError, but there is more apparently.
Then tried the fix suggested in #130 and this apparently solves the ImportError.
But it looks like the user made a pull request that was also merged, so I am wondering why the fix was not part of the library download from PyPI.
Thanks for your help!
Vittorio
Activity
DaneseAnna commentedon Dec 9, 2022
Thank you for reporting this issue. The api import is no longer maintained.
If you import episcanpy as :
import episcanpy as epiyou should be fine.For a more recent and complete tutorial, please check the following link : https://drive.google.com/drive/folders/1lEOSfLKyxGznjB5-UF5-0KLwvx7tU5Ot?usp=sharing
(the website isn't up to date)
Best,
Anna
zvittorio commentedon Dec 9, 2022
Thanks a lot!
I will refer to the more recent tutorial then.
Best,
Vittorio