Merged
Conversation
Contributor
There was a problem hiding this comment.
Pull request overview
This PR updates BEDbase to version 0.12.2, introducing a reference genome validator feature and redesigning the home page. The changes include new backend endpoints for genome analysis, frontend components for displaying validation results, and a modernized home page with improved visual presentation and motion animations.
Changes:
- Added bed classifier and reference genome validator with new API endpoint
/bed/analyze-genome - Redesigned home page with improved layout, motion animations, and statistics display
- Updated dependencies including
@databio/gtars(0.5.3),bbconf(0.14.2), and addedbedboss(0.8.5)
Reviewed changes
Copilot reviewed 13 out of 16 changed files in this pull request and generated 5 comments.
Show a summary per file
| File | Description |
|---|---|
| bedhost/_version.py | Version bumped to 0.12.2 |
| bedhost/main.py | Initialized ReferenceValidator for genome analysis |
| bedhost/routers/bed_api.py | Added new /analyze-genome endpoint for genome validation |
| bedhost/data_models.py | Added ChromLengthUploadModel for genome data upload |
| ui/src/queries/useAnalyzeGenome.ts | New React Query hook for genome analysis |
| ui/src/pages/bed-analytics.tsx | Integrated genome analyzer with UI controls |
| ui/src/pages/home.tsx | Complete redesign with animations and improved layout |
| ui/src/contexts/mosaic-coordinator-context.tsx | Removed unused parameter from SQL query |
| ui/src/const.ts | Updated UMAP data source URL |
| ui/src/components/bed-analytics-components/chromosome-stats-panel.tsx | Added chromosome sorting and commented out chart |
| ui/package.json | Updated gtars dependency to 0.5.3 |
| requirements/requirements-all.txt | Updated bbconf and added bedboss dependencies |
| test.Dockerfile | Fixed config file path consistency |
| ui/public/* | Added and updated SVG icons |
💡 Add Copilot custom instructions for smarter, more guided reviews. Learn how to get started.
ui/src/components/bed-analytics-components/chromosome-stats-panel.tsx
Outdated
Show resolved
Hide resolved
Deploying bedhost-ui with
|
| Latest commit: |
635f24e
|
| Status: | ✅ Deploy successful! |
| Preview URL: | https://b003ec27.bedhost.pages.dev |
| Branch Preview URL: | https://bed-analyze.bedhost.pages.dev |
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
1 participant
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
Changes:
TODO:
__version__.pyfile