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fix: make scenario seed inserts idempotent for CI #117

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Merged
ismaeltocruz merged 2 commits into from
Aug 4, 2026
Merged

fix: make scenario seed inserts idempotent for CI #117

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503fb39
fix: make scenario inserts idempotent to prevent CI duplicate key errors
Oluwajuwon-O Jul 30, 2026
be60a66
fix: stabilize CI against Postgres view SQL drift and black/click break
Oluwajuwon-O Jul 31, 2026
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46 changes: 23 additions & 23 deletions db/dot/2-upload_static_data.sql
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Original file line number Diff line number Diff line change
@@ -1,28 +1,28 @@

-- dot.scenarios
INSERT INTO dot.scenarios VALUES('MISSING-1', 'Missing fields', 'Data entry error', 'Form data entry error', 'Null fields', 'Blank fields');
INSERT INTO dot.scenarios VALUES('INCONSISTENT-1', 'Inconsistent data', 'Data entry error', 'Form data entry error', 'Outliers', 'Jaundice alert=No when fever+jaundice; Incorrect LMP, wrong visit dates');
INSERT INTO dot.scenarios VALUES('INCONSISTENT-2', 'Inconsistent data', 'Data entry error', 'Time/Date incorrect on phone', 'Date logic issues, outliers', '');
INSERT INTO dot.scenarios VALUES('FAKE-1', 'Fake data', 'Data entry error', 'Fake data entered into forms', 'Outliers', '');
INSERT INTO dot.scenarios VALUES('DUPLICATE-1', 'Duplicate data', 'Data entry error', 'Duplicate data entered', 'Duplicate records', 'Multiple person records for the same person');
INSERT INTO dot.scenarios VALUES('BIAS-1', 'Miscalibrated instruments', 'Data entry error', 'Measurement bias', 'Outliers', 'Thermometer bias');
INSERT INTO dot.scenarios VALUES('BIAS-2', 'CHW Training issues', 'Data entry error', 'Measurement bias', 'Outliers', 'Breath counts not measured correctly');
INSERT INTO dot.scenarios VALUES('BUGS-1', 'Foreign keys errors', 'Software bugs', 'Database bugs', 'Foreign key errors', '');
INSERT INTO dot.scenarios VALUES('BUGS-2', 'Inconsistent field formats ', 'Software bugs', 'Database bugs', 'Inconsistent field formats ', 'During form updates/modifications the app developer changes the response type of a field');
INSERT INTO dot.scenarios VALUES('BUGS-3', 'Data category errors ', 'Software bugs', 'Database bugs', 'Category distribution changes over time', '‘Male’ mixed with ‘man’ instead of all ‘Male''');
INSERT INTO dot.scenarios VALUES('BUGS-4', 'Field name changes', 'Software bugs', 'Application bugs', 'Field data changes over time', 'During form updates/modifications the app developer renames a form field name or changes the response type of a field');
INSERT INTO dot.scenarios VALUES('BUGS-5', 'Incorrect metrics/indicators calculation/aggregation', 'Software bugs', 'Reporting bugs', 'Errors in calculated metrics', 'Technical debt complexity in pregnancy national metrics');
INSERT INTO dot.scenarios VALUES('MISSED-1', 'Missed person or patient', 'Process errors', 'Missed task', 'Houses in district not included', 'Unvisited household');
INSERT INTO dot.scenarios VALUES('MISSED-2', 'Missed assessment/report', 'Process errors', 'Missed task', 'Missed follow-up forms', 'Missed pregnancy; Missed delivery report');
INSERT INTO dot.scenarios VALUES('MISSED-3', 'Missed followup', 'Process errors', 'Missed task', 'Inconsistent patterns in follow-up data', '');
INSERT INTO dot.scenarios VALUES('MISSED-4', 'Missed referral visit', 'Process errors', 'Missed task', 'Missing referral visits', 'Patient referred but doesn''t attend');
INSERT INTO dot.scenarios VALUES('MISSED-5', 'Missed treatment', 'Process errors', 'Missed task', 'Inconsistencies in treatment data, outliers', 'No Malaria treatment after diagnosis; Underreporting immunization');
INSERT INTO dot.scenarios VALUES('MISSED-6', 'Missed CHW supervision', 'Process errors', 'Missed task', 'Missed supervision forms', '');
INSERT INTO dot.scenarios VALUES('MISSED-7', 'Missed family planning', 'Process errors', 'Missed task', 'No FP for relevant househould, outliers', '');
INSERT INTO dot.scenarios VALUES('FOLLOWUP-1', 'Unrealistically fast followup', 'Process errors', 'Incorrect followup', 'Unrealistically fast followups', '');
INSERT INTO dot.scenarios VALUES('MULTIEVENTS-1', 'Mutiple same day events', 'Process errors', 'Multiple events', 'Mutiple same day events', '');
INSERT INTO dot.scenarios VALUES('ASSESS-1', 'Inconsistent data', 'Process errors', 'Incorrect assessment', 'Outliers', 'Jaundice alert=No when fever+jaundice; ');
INSERT INTO dot.scenarios VALUES('TREAT-1', 'Incorrect treatment', 'Process errors', 'Incorrect treatment', 'Outliers', 'Drug protocol not followed for Malaria treatment; FP for people on tubal ligation, pregnant or had vasectomy');
INSERT INTO dot.scenarios VALUES('MISSING-1', 'Missing fields', 'Data entry error', 'Form data entry error', 'Null fields', 'Blank fields') ON CONFLICT (scenario_id) DO NOTHING;
INSERT INTO dot.scenarios VALUES('INCONSISTENT-1', 'Inconsistent data', 'Data entry error', 'Form data entry error', 'Outliers', 'Jaundice alert=No when fever+jaundice; Incorrect LMP, wrong visit dates') ON CONFLICT (scenario_id) DO NOTHING;
INSERT INTO dot.scenarios VALUES('INCONSISTENT-2', 'Inconsistent data', 'Data entry error', 'Time/Date incorrect on phone', 'Date logic issues, outliers', '') ON CONFLICT (scenario_id) DO NOTHING;
INSERT INTO dot.scenarios VALUES('FAKE-1', 'Fake data', 'Data entry error', 'Fake data entered into forms', 'Outliers', '') ON CONFLICT (scenario_id) DO NOTHING;
INSERT INTO dot.scenarios VALUES('DUPLICATE-1', 'Duplicate data', 'Data entry error', 'Duplicate data entered', 'Duplicate records', 'Multiple person records for the same person') ON CONFLICT (scenario_id) DO NOTHING;
INSERT INTO dot.scenarios VALUES('BIAS-1', 'Miscalibrated instruments', 'Data entry error', 'Measurement bias', 'Outliers', 'Thermometer bias') ON CONFLICT (scenario_id) DO NOTHING;
INSERT INTO dot.scenarios VALUES('BIAS-2', 'CHW Training issues', 'Data entry error', 'Measurement bias', 'Outliers', 'Breath counts not measured correctly') ON CONFLICT (scenario_id) DO NOTHING;
INSERT INTO dot.scenarios VALUES('BUGS-1', 'Foreign keys errors', 'Software bugs', 'Database bugs', 'Foreign key errors', '') ON CONFLICT (scenario_id) DO NOTHING;
INSERT INTO dot.scenarios VALUES('BUGS-2', 'Inconsistent field formats ', 'Software bugs', 'Database bugs', 'Inconsistent field formats ', 'During form updates/modifications the app developer changes the response type of a field') ON CONFLICT (scenario_id) DO NOTHING;
INSERT INTO dot.scenarios VALUES('BUGS-3', 'Data category errors ', 'Software bugs', 'Database bugs', 'Category distribution changes over time', '‘Male’ mixed with ‘man’ instead of all ‘Male''') ON CONFLICT (scenario_id) DO NOTHING;
INSERT INTO dot.scenarios VALUES('BUGS-4', 'Field name changes', 'Software bugs', 'Application bugs', 'Field data changes over time', 'During form updates/modifications the app developer renames a form field name or changes the response type of a field') ON CONFLICT (scenario_id) DO NOTHING;
INSERT INTO dot.scenarios VALUES('BUGS-5', 'Incorrect metrics/indicators calculation/aggregation', 'Software bugs', 'Reporting bugs', 'Errors in calculated metrics', 'Technical debt complexity in pregnancy national metrics') ON CONFLICT (scenario_id) DO NOTHING;
INSERT INTO dot.scenarios VALUES('MISSED-1', 'Missed person or patient', 'Process errors', 'Missed task', 'Houses in district not included', 'Unvisited household') ON CONFLICT (scenario_id) DO NOTHING;
INSERT INTO dot.scenarios VALUES('MISSED-2', 'Missed assessment/report', 'Process errors', 'Missed task', 'Missed follow-up forms', 'Missed pregnancy; Missed delivery report') ON CONFLICT (scenario_id) DO NOTHING;
INSERT INTO dot.scenarios VALUES('MISSED-3', 'Missed followup', 'Process errors', 'Missed task', 'Inconsistent patterns in follow-up data', '') ON CONFLICT (scenario_id) DO NOTHING;
INSERT INTO dot.scenarios VALUES('MISSED-4', 'Missed referral visit', 'Process errors', 'Missed task', 'Missing referral visits', 'Patient referred but doesn''t attend') ON CONFLICT (scenario_id) DO NOTHING;
INSERT INTO dot.scenarios VALUES('MISSED-5', 'Missed treatment', 'Process errors', 'Missed task', 'Inconsistencies in treatment data, outliers', 'No Malaria treatment after diagnosis; Underreporting immunization') ON CONFLICT (scenario_id) DO NOTHING;
INSERT INTO dot.scenarios VALUES('MISSED-6', 'Missed CHW supervision', 'Process errors', 'Missed task', 'Missed supervision forms', '') ON CONFLICT (scenario_id) DO NOTHING;
INSERT INTO dot.scenarios VALUES('MISSED-7', 'Missed family planning', 'Process errors', 'Missed task', 'No FP for relevant househould, outliers', '') ON CONFLICT (scenario_id) DO NOTHING;
INSERT INTO dot.scenarios VALUES('FOLLOWUP-1', 'Unrealistically fast followup', 'Process errors', 'Incorrect followup', 'Unrealistically fast followups', '') ON CONFLICT (scenario_id) DO NOTHING;
INSERT INTO dot.scenarios VALUES('MULTIEVENTS-1', 'Mutiple same day events', 'Process errors', 'Multiple events', 'Mutiple same day events', '') ON CONFLICT (scenario_id) DO NOTHING;
INSERT INTO dot.scenarios VALUES('ASSESS-1', 'Inconsistent data', 'Process errors', 'Incorrect assessment', 'Outliers', 'Jaundice alert=No when fever+jaundice; ') ON CONFLICT (scenario_id) DO NOTHING;
INSERT INTO dot.scenarios VALUES('TREAT-1', 'Incorrect treatment', 'Process errors', 'Incorrect treatment', 'Outliers', 'Drug protocol not followed for Malaria treatment; FP for people on tubal ligation, pregnant or had vasectomy') ON CONFLICT (scenario_id) DO NOTHING;

-- dot.test_types
INSERT INTO dot.test_types VALUES('relationships', 'dbt', 'Test missing relationships between records', 'multi_table', true, true);
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1 change: 1 addition & 0 deletions dot/requirements_dot.txt
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Original file line number Diff line number Diff line change
@@ -1,4 +1,5 @@
black==21.12b0
click>=8.0,<8.1
dbt-core==1.0.0
dbt-extractor==0.4.0
dbt-postgres==1.0.0
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15 changes: 13 additions & 2 deletions dot/self_tests/integration/test_run_dot_tests.py
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Original file line number Diff line number Diff line change
Expand Up @@ -66,9 +66,20 @@ def test_run_dot_tests(
expected_test_results_summary = pd.read_csv(
"self_tests/data/expected/integration/test_results_summary.csv", index_col=0
)
# pg_get_viewdef formatting varies across Postgres versions
summary_skip = ["run_id", "failed_tests_view_sql"]
pd.testing.assert_frame_equal(
test_results_summary.drop(columns=["run_id"]),
expected_test_results_summary.drop(columns=["run_id"]),
test_results_summary.drop(columns=summary_skip),
expected_test_results_summary.drop(columns=summary_skip),
)
self.assertIn("failed_tests_view_sql", test_results_summary.columns)
self.assertTrue(
test_results_summary["failed_tests_view_sql"]
.fillna("")
.astype(str)
.str.len()
.gt(0)
.any()
)

test_results = pd.read_sql(f"SELECT * FROM {schema_dot}.test_results", conn_dot)
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25 changes: 15 additions & 10 deletions dot/self_tests/unit/test_dbt.py
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Original file line number Diff line number Diff line change
Expand Up @@ -50,10 +50,16 @@ def test_extract_df_from_dbt_test_results_json(
skip_columns = [
"run_id",
"id_column_name",
# pg_get_viewdef formatting varies across Postgres versions
"failed_tests_view_sql",
]
pd.testing.assert_frame_equal(
output.drop(columns=skip_columns), expected.drop(columns=skip_columns)
)
self.assertIn("failed_tests_view_sql", output.columns)
self.assertTrue(
output["failed_tests_view_sql"].fillna("").astype(str).str.len().gt(0).any()
)

@patch("utils.configuration_utils._get_filename_safely")
def test_get_view_definition(
Expand All @@ -64,17 +70,16 @@ def test_get_view_definition(
"""
mock_get_filename_safely.side_effect = self.mock_get_filename_safely

self.assertEqual(
get_view_definition(
"ScanProject1",
"chv_tr_different_dot_model__all_flight_data_price_distribution",
),
" SELECT dot_model__airlines_data.airline,\n"
" failed.failed\n"
" FROM self_tests_public_tests.dot_model__airlines_data\n"
" JOIN unnest(ARRAY['British Airways'::text]) failed(failed)"
" ON failed.failed = dot_model__airlines_data.airline::text;",
view_sql = get_view_definition(
"ScanProject1",
"chv_tr_different_dot_model__all_flight_data_price_distribution",
)
# Exact pretty-printing from pg_get_viewdef varies by Postgres version;
# assert on stable semantic fragments instead.
self.assertIn("dot_model__airlines_data", view_sql)
self.assertIn("airline", view_sql)
self.assertIn("British Airways", view_sql)
self.assertIn("unnest", view_sql)

@staticmethod
def test_format_uuid_list():
Expand Down
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