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gvarnavi wants to merge 142 commits into from
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v.1.0.8 release #160

gvarnavi wants to merge 142 commits into from

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@gvarnavi gvarnavi commented Jan 23, 2026

Should autofix gracefully

cophus and others added 30 commits June 13, 2025 09:04
@cophus
DriftCorrection updates 01
1f5e206
@cophus
Merge remote-tracking branch 'origin/dev' into dev
10e01e1
@cophus
Adding fourier resampling to Dataset class
991c59f
@cophus
updating naming
bd09789
@cophus
Update bin method, add transpose and astype methods
cb42626
@cophus
Merge branch 'dev' into drift
123781b
@cophus
Adding origin shifting to fourier_resample
eb52625
@cophus
Adding tests, fixing bin and fourier_resample to pass
4058b79
@cophus
update bin to use sum or mean
be96a78
@cophus
modify edge blending, add inset axes
9f1ab34
@cophus
modifying tight_layout call
a240323
@cophus
Fixing masking bug
ba69b85
@cophus
Merge remote-tracking branch 'origin/dev' into drift
b8c1dcc 
and fixes
@cophus
adding imports to dataset.py
5aa4d29
@cophus
Merge remote-tracking branch 'cophus/drift' into drift
28f3559
@cophus
Updating dataset methods to pass tests
8e3ef37
@cophus
fixing show_2d to return proper axes handle
1eff2ed
@gvarnavi
Merge pull request #128 from electronmicroscopy/main
980b736 
Sync main to dev
@arthurmccray
re-adding object_models accumulate constraints to fix logging
1f5101c
@arthurmccray
fixing bug in object tv constraints
b91c911
@smribet
bugfix
d670029
@gvarnavi
removing torchsummary
dc094ad
@quantem-bot
Merge pull request #129 from electronmicroscopy/torchsummary-patch
9f47118 
removing torchsummary
@arthurmccray
adding dense NN and cnn_dense NN
ce62471
@arthurmccray
fixing a dtype and adding comment about memory management in preproce…
8040e45 
…ssing loop
@arthurmccray
refactoring and adding docstrings to core ml code
267775d
@smribet
offset fix
f1f8529
@gvarnavi
allow optimizing with fixed parameters
f665609
@gvarnavi
unify API with fit and grid_search
63459d3
@cophus
Merge remote-tracking branch 'origin/dev' into drift
f0e0235
arthurmccray and others added 29 commits January 19, 2026 16:46
@arthurmccray
updating config str handling
849a96e
@arthurmccray
refactoring "block" to "layer" for DenseNN
5d9a785
@cedriclim1
Merge pull request #131 from electronmicroscopy/ml
7813b54 
updating core/ml models
@gvarnavi
add radial averaging on different bins
8b1c8bd
@gvarnavi
Merge remote-tracking branch 'origin/dev' into diffractive_imaging
c967d41
@gvarnavi
Merge pull request #152 from electronmicroscopy/chore/update-lockfile…
5be78df 
…-20260119

chore: Update dependencies
@gvarnavi
Merge remote-tracking branch 'origin/dev' into diffractive_imaging
ce3ec69
@arthurmccray
fixing "gpu" bug in config and adding pytest
fdca2dc
@arthurmccray
adding flag to prevent pytest warnings for test_autoserialize
c8743cf
@arthurmccray
adding mps fallback for selecting device of "gpu"
8f6a6b4
@gvarnavi
minor typing changes, before removing streaming parallax
5be5642
@gvarnavi
remove streaming parallax
c829286
@gvarnavi
test mps-cuda bug
1d17127
@gvarnavi
Merge pull request #153 from electronmicroscopy/hotfix-config
f96f2c6 
Hotfix config
@bobleesj
Refactor: move show_2d import to module level
eafb601
@gvarnavi
adding pytest-cov to test deps
c1f1451
@gvarnavi
reverting rotation bug
2fd0201
@bobleesj
dataset3d show - support min, max, step, negative step
faa9680
@bobleesj
consistent suptitle spacing for show() in dataset3d
540e373
@bobleesj
simply padding logic for grid
33597e5
@smribet
Merge pull request #154 from electronmicroscopy/diffractive_imaging
a3f463e 
Removing streaming parallax implementation before release
@bobleesj
add tests - show function in dataset3d
fc1c30f
@arthurmccray
Merge pull request #150 from bobleesj/show3d
2686710 
`Dataset3d` support `show()` for image grid with sensible defaults.
@gvarnavi
adding workflow to regenerate lock on PR into main
8ba1e92
@gvarnavi
no need for widget
f7a79fd
@gvarnavi
perhaps --no-workspace was wrong
748c8ff
@quantem-bot
Merge pull request #156 from electronmicroscopy/actions-fix
a8455db 
adding workflow to regenerate lock on PR into main
@gvarnavi
remove macos-15-intel
464cf10
@quantem-bot
Merge pull request #159 from electronmicroscopy/actions-fix
07ca2df 
remove macos-15-intel
@gvarnavi gvarnavi closed this Jan 23, 2026
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8 participants

@gvarnavi @cophus @arthurmccray @smribet @quantem-bot @bobleesj @cedriclim1