v2.3.0 release (develop -> master) by bio-boris · Pull Request #129 · kbase/catalog

bio-boris · 2022-10-08T00:02:25Z

Add GHCR.io
Temporarily Add Logging

Draft: Add logs to help with debugging

Remove logging

Convert requirements.txt to Pipfile

codecov · 2025-03-04T01:29:28Z

Codecov Report

Attention: Patch coverage is 96.90722% with 6 lines in your changes missing coverage. Please review.

Please upload report for BASE (master@6873c95). Learn more about missing BASE report.

Files with missing lines	Patch %	Lines
lib/biokbase/catalog/db.py	96.85%	6 Missing ⚠️

Additional details and impacted files

@@            Coverage Diff            @@
##             master     #129   +/-   ##
=========================================
  Coverage          ?   81.02%           
=========================================
  Files             ?        8           
  Lines             ?     2846           
  Branches          ?        0           
=========================================
  Hits              ?     2306           
  Misses            ?      540           
  Partials          ?        0

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Add retryWrites & update release notes

fix typo in README.md

.github/workflows/pr_build.yml

.github/codeql.yml

Uncomment the trivy-scan in the pr_build.yml file

MrCreosote

LGTM. @bio-boris do you want to review further?

bio-boris · 2025-03-12T00:57:10Z

Looks fine to me

bio-boris and others added 30 commits October 7, 2022 15:38

Update controller.py

233708b

Create pr_build.yml

7661ea9

Create release-main.yml

cd61d0c

Create manual-build.yml

c701a39

Update db.py

f7df4ac

Merge pull request #126 from kbase/add_logs

83d5d04

Draft: Add logs to help with debugging

Update controller.py

7d47f2f

Update db.py

21139c6

Merge pull request #130 from kbase/remove-logging

4b7def5

Remove logging

Update pr_build.yml

7642a0c

Update controller.py

75769b3

Update controller.py

2054b0d

Merge conflict

923f87a

add GHA test.yml, codeql, and dependabot.yml (#136)

dd630ce

mongo7 upgrade

6ec3d63

upgrade pymongo to 4.7.2

26b7d9e

update python to 3.9.19

c5f1294

update Makefile and run_tests.sh scripts

1e57094

update submodules

47ff558

fix gradle not found

4e1f8bf

start nms service with docker-compose

4e0c2dc

update nms submodule to the latest

8095c7f

install docker-compose in GHA

6f22c74

switch catalog mongo7 port to 27018

dff0b20

fix mongo port

76bff46

fix mongo port mapping

0b7cd2a

set admin_users

66f2485

check admin users

85c65af

shut down NMS service properly

9fda21f

fix nms curl

91c72f7

Xiangs18 added 3 commits March 3, 2025 15:23

add missing lib pyyaml

71ba35e

move semantic_version to packages

0c8e6c0

Merge pull request #145 from kbase/dev-pipenv

57622f0

Convert requirements.txt to Pipfile

Xiangs18 added 11 commits March 4, 2025 15:43

fix mongo_authMechanism name

ef31a9c

add retrywrites param

b9d056a

move release notes from README.md to RELEASE_NOTES.md

9b1d4b9

removed mongodb-retrywrites from test.cfg.example

0f576bf

add tests for retryWrites

fa3fbf5

fix format

3111c53

add print meesage to verify retryWrites setting

91b5c74

remove print

63f2287

Merge pull request #146 from kbase/dev-add_retryWrites

563a733

Add retryWrites & update release notes

fix typo in README.md

d6f3ded

Merge pull request #147 from kbase/dev-fix_typo

8282bc4

fix typo in README.md

Xiangs18 changed the title ~~Develop->Main~~ v2.3.0 release (develop -> master) Mar 8, 2025

Xiangs18 requested review from MrCreosote and Xiangs18 March 8, 2025 00:46

Xiangs18 previously approved these changes Mar 8, 2025

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MrCreosote reviewed Mar 8, 2025

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Xiangs18 added 2 commits March 11, 2025 11:56

uncomment trivy-scan

8b5f518

Merge pull request #152 from kbase/dev-pr_build

538b42f

Uncomment the trivy-scan in the pr_build.yml file

Xiangs18 dismissed their stale review via 538b42f March 11, 2025 19:17

Xiangs18 requested review from MrCreosote and Xiangs18 March 11, 2025 19:23

MrCreosote reviewed Mar 11, 2025

View reviewed changes

MrCreosote approved these changes Mar 12, 2025

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Xiangs18 approved these changes Mar 12, 2025

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Xiangs18 merged commit bfd28df into master Mar 12, 2025
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v2.3.0 release (develop -> master)#129

v2.3.0 release (develop -> master)#129
Xiangs18 merged 115 commits intomasterfrom
develop

bio-boris commented Oct 8, 2022

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codecov bot commented Mar 4, 2025 •

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bio-boris commented Oct 8, 2022

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bio-boris commented Mar 12, 2025

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codecov bot commented Mar 4, 2025 •

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