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    16 repositories

    • Tora-PPI

      Public
      Python
      •1•0•0•0•Updated Jun 23, 2026Jun 23, 2026

    • ARISE

      Public
      Jupyter Notebook
      •1•0•0•0•Updated Jun 17, 2026Jun 17, 2026

    • BRIDGE

      Public
      Bridging Sequence–Structure Motifs and Genetic Variants for Genome-wide Dynamic RNA–Protein Interaction Profiling
      Jupyter Notebook
      •
      MIT License
      •3•0•0•0•Updated May 15, 2026May 15, 2026

    • NoMoCLIP

      Public
      Interpretable Modeling of RNA–Protein Interactions from eCLIP‑Seq Profiles for Motif‑Free RBPs
      Python
      •
      MIT License
      •1•0•0•0•Updated Apr 22, 2026Apr 22, 2026

    • CARINA

      Public
      Python
      •
      Apache License 2.0
      •1•0•0•0•Updated Apr 13, 2026Apr 13, 2026

    • ProPaST

      Public
      Jupyter Notebook
      •2•0•0•0•Updated Jan 29, 2026Jan 29, 2026

    • GARDEN

      Public
      Robust characterization and interpretation of rare pathogenic cell populations from spatial omics using GARDEN
      Jupyter Notebook
      •
      MIT License
      •1•0•0•0•Updated Jan 21, 2026Jan 21, 2026

    • scMDCF

      Public
      Unified Cross-modality Integration and Inference of Single-Cell Multiomics Data with Deep Contrastive Learning
      Jupyter Notebook
      •
      MIT License
      •1•0•0•0•Updated Oct 28, 2025Oct 28, 2025

    • scAGDE

      Public
      scAGDE is a novel single-cell chromatin accessibility model-based deep graph representation learning method that simultaneously learns feature representation an…
      Jupyter Notebook
      •
      MIT License
      •3•0•0•0•Updated Jan 22, 2025Jan 22, 2025

    • RNA-and-ATAC-data-upstream

      Public
      Shell
      •1•0•0•0•Updated Jul 25, 2024Jul 25, 2024

    • 3UTRBERT

      Public
      Python
      •
      MIT License
      •1•0•0•0•Updated Jun 22, 2024Jun 22, 2024

    • HDRNet

      Public
      Python
      •
      MIT License
      •3•0•0•0•Updated Jan 18, 2024Jan 18, 2024

    • scDEFR

      Public
      Python
      •
      MIT License
      •2•0•0•0•Updated Oct 25, 2022Oct 25, 2022

    • scBGEDA

      Public
      Python
      •1•0•0•0•Updated Jun 3, 2022Jun 3, 2022

    • scRNA-seq1

      Public
      0•0•0•0•Updated Feb 14, 2022Feb 14, 2022

    • iCircRBP-DHN

      Public
      Python
      •2•0•0•0•Updated Mar 22, 2021Mar 22, 2021
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