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@rnajena

RNA Bioinformatics and High-Throughput Analysis Jena

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  1. bertax bertax Public

    Taxonomic classification of DNA sequences

    Python 57 10

  2. poseidon poseidon Public

    PoSeiDon: positive selection detection and recombination analysis pipeline

    C 39 8

  3. vidhop vidhop Public

    VIDHOP is a virus host predicting tool. Its able to predict influenza A virus, rabies lyssavirus and rotavirus A.

    Python 22 9

  4. EpiDope EpiDope Public

    Prediction of B-cell epitopes from amino acid sequences using deep neural networks.

    Python 18 7

  5. viralclust viralclust Public

    Small pipeline to cluster viral genomes based on their k-mer content. WiP

    Nextflow 17 5

  6. read5 read5 Public

    Wrapper to read fast5, slow5, blow5 and pod5 files.

    Python 13 1

Repositories

Showing 10 of 28 repositories
  • sugar Public

    S*R -- A Python framework for bioinformatics

    rnajena/sugar’s past year of commit activity
    Python 6 MIT 1 0 0 Updated Jan 31, 2026
  • SweetSynteny Public
    rnajena/SweetSynteny’s past year of commit activity
    Python 2 MIT 1 0 0 Updated Jan 15, 2026
  • dynamont Public
    rnajena/dynamont’s past year of commit activity
    C++ 5 GPL-3.0 1 0 1 Updated Jan 12, 2026
  • diffMONT Public

    diffMONT is a python-based tool for predicting methylation-specific PCR (MSP) primers, based on Nanopore sequencing data. Given mutliple bedmethyl files, diffMONT detects methylation specific PCR primer regions, which can distinguish between two groups of samples (originally cancer patients vs. healthy controls).

    rnajena/diffMONT’s past year of commit activity
    Python 3 MIT 0 0 0 Updated Nov 18, 2025
  • viralclust Public

    Small pipeline to cluster viral genomes based on their k-mer content. WiP

    rnajena/viralclust’s past year of commit activity
    Nextflow 17 GPL-3.0 5 7 0 Updated Nov 17, 2025
  • DnaFeaturesViewerLite Public Forked from Edinburgh-Genome-Foundry/DnaFeaturesViewer

    👁️ Python library to plot DNA sequence features (e.g. from Genbank files) -- lite version

    rnajena/DnaFeaturesViewerLite’s past year of commit activity
    Python 1 MIT 106 0 0 Updated Nov 12, 2025
  • AssayBLAST Public
    rnajena/AssayBLAST’s past year of commit activity
    Python 4 MIT 0 1 0 Updated Oct 24, 2025
  • RNAswarm Public

    RNAswarm is a nextflow pipeline for differential RNA-RNA interaction analysis using RNA cross-linking methodologies

    rnajena/RNAswarm’s past year of commit activity
    Python 3 MIT 1 2 0 Updated Oct 16, 2025
  • poseidon Public

    PoSeiDon: positive selection detection and recombination analysis pipeline

    rnajena/poseidon’s past year of commit activity
    C 39 MIT 8 8 (1 issue needs help) 0 Updated Sep 22, 2025
  • bayhunter Public

    BayHunter: A Bayesian approach to inferring the differential expression of small RNAs from read counts

    rnajena/bayhunter’s past year of commit activity
    0 0 0 0 Updated Sep 10, 2025
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