Skip to content
@theislab

Theis Lab

Theis Lab at Institute of Computational Biology, Helmholtz Munich

Pinned Loading

  1. single-cell-best-practices single-cell-best-practices Public

    https://www.sc-best-practices.org

    Jupyter Notebook 1.3k 278

  2. scvelo scvelo Public

    RNA Velocity generalized through dynamical modeling

    Python 511 114

  3. scarches scarches Public

    Reference mapping for single-cell genomics

    Jupyter Notebook 411 72

  4. scib scib Public

    Benchmarking analysis of data integration tools

    Python 431 77

  5. ehrapy ehrapy Public

    Electronic Health Record Analysis with Python.

    Python 361 53

  6. moscot moscot Public

    Multi-omic single-cell optimal transport tools

    Python 216 16

Repositories

Showing 10 of 273 repositories
  • sckitflow Public
    theislab/sckitflow's past year of commit activity
    Python 7 BSD-3-Clause 0 25 (2 issues need help) 7 Updated Sep 21, 2026
  • gh-dashboard Public

    A dashboard of everything in the theislab GitHub repository

    theislab/gh-dashboard's past year of commit activity
    HTML 8 0 1 0 Updated Sep 21, 2026
  • DRVI Public

    Unsupervised Deep Disentangled Representation of Single-Cell Omics

    theislab/DRVI's past year of commit activity
    Python 82 BSD-3-Clause 6 5 1 Updated Sep 21, 2026
  • destiny Public

    R package for single cell and other data analysis using diffusion maps

    theislab/destiny's past year of commit activity
    R 113 GPL-3.0 12 31 0 Updated Sep 20, 2026
  • geome Public
    theislab/geome's past year of commit activity
    Python 17 MIT 4 7 1 Updated Sep 20, 2026
  • ehrdata Public

    A datastructure for EHR data

    theislab/ehrdata's past year of commit activity
    Python 15 Apache-2.0 7 7 4 Updated Sep 18, 2026
  • cellink Public

    Scalable framework for integrating single-cell omics with genetic data using AnnData.

    theislab/cellink's past year of commit activity
    Python 21 Apache-2.0 5 5 0 Updated Sep 17, 2026
  • ehrapy Public

    Electronic Health Record Analysis with Python.

    theislab/ehrapy's past year of commit activity
    Python 361 Apache-2.0 53 17 6 Updated Sep 16, 2026
  • anndata2ri Public

    Convert between AnnData and SingleCellExperiment

    theislab/anndata2ri's past year of commit activity
    Python 153 GPL-3.0 19 11 0 Updated Sep 15, 2026
  • scanpydoc Public

    Collection of Sphinx extensions similar to (but more flexible than) numpydoc

    theislab/scanpydoc's past year of commit activity
    Python 12 GPL-3.0 5 4 0 Updated Sep 15, 2026
View all repositories

Most used topics

Loading…