Bump the all-julia-packages group across 3 directories with 1 update

[dependabot]

Updates the requirements on and HypothesisTests to permit the latest version.
Updates HypothesisTests to 0.12.0

Release notes

Sourced from HypothesisTests's releases.

v0.12.0

HypothesisTests v0.12.0

Diff since v0.11.8

Breaking changes in 0.12.0 (rank tests)

• One-sided confint flips its endpoint (#368): tail = :left now gives (-Inf, hi), matching the rest of the package and R. Values unchanged; callers need the other tail or index.
• The reported point estimate is now the Hodges-Lehmann estimate (#363), not the sample median (or difference of medians); Mann-Whitney's label reads Location shift.
• Signed rank intervals change value (#361, #362): the approximate type gets a real normal-approximation interval instead of the exact one, zeros are dropped as they already were from the p-value, and level selection is conservative like R's, so intervals never narrow.
• Exact signed rank two-sided p-values are capped at 1; they could reach 1.25.
• Refused computations throw ComputationTooLarge instead of hanging (tied enumerations, oversized interval/estimate sets).
• StatsFuns 2.2.1+ required; older versions gave invalid exact p-values from n = 72.
• The rank-test structs lose their type parameters (all fields Float64), and the six-argument positional Mann-Whitney constructor is gone.

New features:

• Mann-Whitney confint and hodgeslehmann, a method keyword, more element types and AbstractVector inputs, unattainable-level warnings, a specification appendix in the docs.

Merged pull requests:

• Bump codecov/codecov-action from 6 to 7 (#358) (@​dependabot[bot])
• Bump actions/checkout from 6 to 7 (#360) (@​dependabot[bot])
• Mann-Whitney confidence intervals, Hodges-Lehmann estimates, and a method keyword (#367) (@​yoninazarathy)
• Clip the exact signed rank two-sided p-value at 1 (#377) (@​yoninazarathy)
• Fix two Int64 overflows behind the rank test variances (#378) (@​yoninazarathy)
• Accept any AbstractVector in the signed rank constructors (#379) (@​yoninazarathy)
• Report both observation counts, and name the signed rank statistic in show (#380) (@​yoninazarathy)
• State the nulls the rank tests control, and label the variances as variances (#381) (@​yoninazarathy)
• Flip the one-sided rank intervals to the package's own convention (#382) (@​yoninazarathy)
• Report the Hodges-Lehmann estimate all four rank tests are built around (#383) (@​yoninazarathy)
• Warn when a requested confidence level is out of reach for the sample (#384) (@​yoninazarathy)
• Pin the rank test routes the suite could not tell apart, against R (#385) (@​yoninazarathy)
• Give the signed rank tests intervals that match the test, dropping zeros (#386) (@​yoninazarathy)
• Update HypothesisTests version to 0.12 (#387) (@​andreasnoack)
• Re-measure the exact interval bound against the bisection that replaced the scan (#388) (@​yoninazarathy)
• Add an appendix of mathematical specifications (#389) (@​yoninazarathy)

Closed issues:

• calculate_ci uses the exact null distribution for Approximate* tests, and selects the wrong order statistic from n = 73 (#361)
• Zero differences are dropped for the signed-rank statistic but retained for its confidence interval (#362)
• Wilcoxon rank tests report a point estimate that is not the one their confidence interval is built around (#363)
• Allow choosing between the exact and approximate methods for the Wilcoxon rank tests (#364)
• SignedRankTest rejects Float32, Float16, BigFloat and Rational input (#365)
• One-sided confint uses opposite conventions for the rank tests and everything else (#368)

Commits

• c589e96 Merge pull request #389 from yoninazarathy/yn/spec-appendix
• f45b5cf Say the median field is carried, not reported
• 6d6dec9 Add an appendix of mathematical specifications
• b807fea Merge pull request #388 from yoninazarathy/yn/recalibrate-exact-ci-bound
• cfca218 Re-measure the exact interval bound against the bisection that replaced the scan
• e287ec5 Merge pull request #386 from yoninazarathy/yn/signedrank-interval-routing
• 434d482 Give the signed rank tests intervals that match the test, dropping zeros
• cd1e99a Merge pull request #387 from JuliaStats/andreasnoack-patch-2
• bb66da7 Update HypothesisTests version to 0.12
• 96ec50b Bump version from 0.11.8 to 0.12.0
• Additional commits viewable in compare view

Updates HypothesisTests to 0.12.0

Release notes

Sourced from HypothesisTests's releases.

v0.12.0

HypothesisTests v0.12.0

Diff since v0.11.8

Breaking changes in 0.12.0 (rank tests)

• One-sided confint flips its endpoint (#368): tail = :left now gives (-Inf, hi), matching the rest of the package and R. Values unchanged; callers need the other tail or index.
• The reported point estimate is now the Hodges-Lehmann estimate (#363), not the sample median (or difference of medians); Mann-Whitney's label reads Location shift.
• Signed rank intervals change value (#361, #362): the approximate type gets a real normal-approximation interval instead of the exact one, zeros are dropped as they already were from the p-value, and level selection is conservative like R's, so intervals never narrow.
• Exact signed rank two-sided p-values are capped at 1; they could reach 1.25.
• Refused computations throw ComputationTooLarge instead of hanging (tied enumerations, oversized interval/estimate sets).
• StatsFuns 2.2.1+ required; older versions gave invalid exact p-values from n = 72.
• The rank-test structs lose their type parameters (all fields Float64), and the six-argument positional Mann-Whitney constructor is gone.

New features:

• Mann-Whitney confint and hodgeslehmann, a method keyword, more element types and AbstractVector inputs, unattainable-level warnings, a specification appendix in the docs.

Merged pull requests:

• Bump codecov/codecov-action from 6 to 7 (#358) (@​dependabot[bot])
• Bump actions/checkout from 6 to 7 (#360) (@​dependabot[bot])
• Mann-Whitney confidence intervals, Hodges-Lehmann estimates, and a method keyword (#367) (@​yoninazarathy)
• Clip the exact signed rank two-sided p-value at 1 (#377) (@​yoninazarathy)
• Fix two Int64 overflows behind the rank test variances (#378) (@​yoninazarathy)
• Accept any AbstractVector in the signed rank constructors (#379) (@​yoninazarathy)
• Report both observation counts, and name the signed rank statistic in show (#380) (@​yoninazarathy)
• State the nulls the rank tests control, and label the variances as variances (#381) (@​yoninazarathy)
• Flip the one-sided rank intervals to the package's own convention (#382) (@​yoninazarathy)
• Report the Hodges-Lehmann estimate all four rank tests are built around (#383) (@​yoninazarathy)
• Warn when a requested confidence level is out of reach for the sample (#384) (@​yoninazarathy)
• Pin the rank test routes the suite could not tell apart, against R (#385) (@​yoninazarathy)
• Give the signed rank tests intervals that match the test, dropping zeros (#386) (@​yoninazarathy)
• Update HypothesisTests version to 0.12 (#387) (@​andreasnoack)
• Re-measure the exact interval bound against the bisection that replaced the scan (#388) (@​yoninazarathy)
• Add an appendix of mathematical specifications (#389) (@​yoninazarathy)

Closed issues:

• calculate_ci uses the exact null distribution for Approximate* tests, and selects the wrong order statistic from n = 73 (#361)
• Zero differences are dropped for the signed-rank statistic but retained for its confidence interval (#362)
• Wilcoxon rank tests report a point estimate that is not the one their confidence interval is built around (#363)
• Allow choosing between the exact and approximate methods for the Wilcoxon rank tests (#364)
• SignedRankTest rejects Float32, Float16, BigFloat and Rational input (#365)
• One-sided confint uses opposite conventions for the rank tests and everything else (#368)

Commits

• c589e96 Merge pull request #389 from yoninazarathy/yn/spec-appendix
• f45b5cf Say the median field is carried, not reported
• 6d6dec9 Add an appendix of mathematical specifications
• b807fea Merge pull request #388 from yoninazarathy/yn/recalibrate-exact-ci-bound
• cfca218 Re-measure the exact interval bound against the bisection that replaced the scan
• e287ec5 Merge pull request #386 from yoninazarathy/yn/signedrank-interval-routing
• 434d482 Give the signed rank tests intervals that match the test, dropping zeros
• cd1e99a Merge pull request #387 from JuliaStats/andreasnoack-patch-2
• bb66da7 Update HypothesisTests version to 0.12
• 96ec50b Bump version from 0.11.8 to 0.12.0
• Additional commits viewable in compare view

Updates HypothesisTests to 0.12.0

Release notes

Sourced from HypothesisTests's releases.

v0.12.0

HypothesisTests v0.12.0

Diff since v0.11.8

Breaking changes in 0.12.0 (rank tests)

• One-sided confint flips its endpoint (#368): tail = :left now gives (-Inf, hi), matching the rest of the package and R. Values unchanged; callers need the other tail or index.
• The reported point estimate is now the Hodges-Lehmann estimate (#363), not the sample median (or difference of medians); Mann-Whitney's label reads Location shift.
• Signed rank intervals change value (#361, #362): the approximate type gets a real normal-approximation interval instead of the exact one, zeros are dropped as they already were from the p-value, and level selection is conservative like R's, so intervals never narrow.
• Exact signed rank two-sided p-values are capped at 1; they could reach 1.25.
• Refused computations throw ComputationTooLarge instead of hanging (tied enumerations, oversized interval/estimate sets).
• StatsFuns 2.2.1+ required; older versions gave invalid exact p-values from n = 72.
• The rank-test structs lose their type parameters (all fields Float64), and the six-argument positional Mann-Whitney constructor is gone.

New features:

• Mann-Whitney confint and hodgeslehmann, a method keyword, more element types and AbstractVector inputs, unattainable-level warnings, a specification appendix in the docs.

Merged pull requests:

• Bump codecov/codecov-action from 6 to 7 (#358) (@​dependabot[bot])
• Bump actions/checkout from 6 to 7 (#360) (@​dependabot[bot])
• Mann-Whitney confidence intervals, Hodges-Lehmann estimates, and a method keyword (#367) (@​yoninazarathy)
• Clip the exact signed rank two-sided p-value at 1 (#377) (@​yoninazarathy)
• Fix two Int64 overflows behind the rank test variances (#378) (@​yoninazarathy)
• Accept any AbstractVector in the signed rank constructors (#379) (@​yoninazarathy)
• Report both observation counts, and name the signed rank statistic in show (#380) (@​yoninazarathy)
• State the nulls the rank tests control, and label the variances as variances (#381) (@​yoninazarathy)
• Flip the one-sided rank intervals to the package's own convention (#382) (@​yoninazarathy)
• Report the Hodges-Lehmann estimate all four rank tests are built around (#383) (@​yoninazarathy)
• Warn when a requested confidence level is out of reach for the sample (#384) (@​yoninazarathy)
• Pin the rank test routes the suite could not tell apart, against R (#385) (@​yoninazarathy)
• Give the signed rank tests intervals that match the test, dropping zeros (#386) (@​yoninazarathy)
• Update HypothesisTests version to 0.12 (#387) (@​andreasnoack)
• Re-measure the exact interval bound against the bisection that replaced the scan (#388) (@​yoninazarathy)
• Add an appendix of mathematical specifications (#389) (@​yoninazarathy)

Closed issues:

• calculate_ci uses the exact null distribution for Approximate* tests, and selects the wrong order statistic from n = 73 (#361)
• Zero differences are dropped for the signed-rank statistic but retained for its confidence interval (#362)
• Wilcoxon rank tests report a point estimate that is not the one their confidence interval is built around (#363)
• Allow choosing between the exact and approximate methods for the Wilcoxon rank tests (#364)
• SignedRankTest rejects Float32, Float16, BigFloat and Rational input (#365)
• One-sided confint uses opposite conventions for the rank tests and everything else (#368)

Commits

• c589e96 Merge pull request #389 from yoninazarathy/yn/spec-appendix
• f45b5cf Say the median field is carried, not reported
• 6d6dec9 Add an appendix of mathematical specifications
• b807fea Merge pull request #388 from yoninazarathy/yn/recalibrate-exact-ci-bound
• cfca218 Re-measure the exact interval bound against the bisection that replaced the scan
• e287ec5 Merge pull request #386 from yoninazarathy/yn/signedrank-interval-routing
• 434d482 Give the signed rank tests intervals that match the test, dropping zeros
• cd1e99a Merge pull request #387 from JuliaStats/andreasnoack-patch-2
• bb66da7 Update HypothesisTests version to 0.12
• 96ec50b Bump version from 0.11.8 to 0.12.0
• Additional commits viewable in compare view

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