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Pull requests: malariagen/malariagen-data-python

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Pull requests list

Fix #766: handle missing terms-of-use columns gracefully
#1095 opened Mar 10, 2026 by bleedblack1 Loading…
1
docs: add high level API overview diagram
#1090 opened Mar 9, 2026 by Svamsi22 Loading…
1
feat: Add FASTQ-based species group detection utility (#881)
#1089 opened Mar 9, 2026 by Gopisokk Loading…
1
feat: Add user warning for empty sample metadata query (fixes #1083)
#1088 opened Mar 9, 2026 by Gopisokk Loading…
1
Adding limited support for Adar
#1086 opened Mar 9, 2026 by jonbrenas Loading…
fix: warn when sample_metadata() returns empty result due to case-sensitivity
#1084 opened Mar 9, 2026 by sallykinyua Loading…
1
1
fix: use is not None for region boundary checks in _subset_genome_sequence_region
#1082 opened Mar 9, 2026 by Carbon14-48 Loading…
docs: fix distance_sort parameter description in tree_params.py
#1081 opened Mar 9, 2026 by Carbon14-48 Loading…
Fixed lookup sample errors
#1079 opened Mar 8, 2026 by arnvptl Loading…
feat: add public sample_count_het() and cohort_heterozygosity() methods (#775)
#1077 opened Mar 8, 2026 by Tanisha127 Loading…
1
feat: allow snp_allele_frequencies to accept genomic regions
#1076 opened Mar 7, 2026 by joshitha1808 Loading…
1
Added missing docstrings for genome_features functions
#1074 opened Mar 7, 2026 by jemmziray-tech Loading…
1
1
Add VCF export support for SNP call datasets
#1071 opened Mar 7, 2026 by adilraza99 Loading…
1
2
Add caching to general_metadata to avoid repeated metadata parsing
#1069 opened Mar 7, 2026 by vshnvii Loading…
Enhance docstring for frequency plot function added doc string #826
#1068 opened Mar 7, 2026 by sallykinyua Loading…
1
3
Add LD-pruned biallelic SNP access method
#1067 opened Mar 7, 2026 by adilraza99 Loading…
1
3
Handle empty SNP/AA results in allele frequency tests
#1066 opened Mar 6, 2026 by adilraza99 Loading…
1
Optimize quarter column computation using vectorized NumPy operations
#1065 opened Mar 6, 2026 by vshnvii Loading…
1
Added LD pruning support and PLINK export for ADMIXTURE analysis
#1063 opened Mar 6, 2026 by rehanxt5 Loading…
1
16
Add VcfConverter module to export biallelic SNPs to Variant Call Format
#1061 opened Mar 6, 2026 by shauryam2807 Loading…
1
10
feat: add VCF export functionality resolves #1054
#1060 opened Mar 6, 2026 by Tanisha127 Loading…
1 task
4
feat: add LD pruning and admixture data preparation
#1059 opened Mar 6, 2026 by 31puneet Loading…
1
2
Add example notebook demonstrating genomic data exploration using mal…
#1058 opened Mar 6, 2026 by priyarai121 Loading…
2
fix: decode URL-escaped local filesystem paths in _init_filesystem
#1057 opened Mar 6, 2026 by Sharon-codes Loading…
1
2
Add cohort_geometries() to access cohort GeoJSON metadata
#1053 opened Mar 5, 2026 by adilraza99 Loading…
2
ProTip! What’s not been updated in a month: updated:<2026-02-10.